<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:11:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257883" ref_strand="+" ref_description="SGN-E257883 [cLEG-39-B16]">
      <seq>aggtcactttttctgaagagttaggcatgcagacctcagcaaggtagccaaggtttcagttcacttatgtaggttacaagtatttgatcctaatcctcgccctcttcatttttccccttcacgtaatagatatcctaaaggctatgggattttaggagatgttgtacacagccacatcttccagacagtggccttgcttgctatggagccgcctgtcacccttgatggtgaagatgttcgttatgagaaagttaaggttttgaaatcaattcgaaagttggaatcatctgatgtaattcttgggcatagtgaagctgattccggaagtaacttcaaagatatggaaaaccttatgcccacatattttggtgctgctttacacatcgataacgcacggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="6507" stop="7593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6807" g_stop="7056" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7057" i_stop="7141" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7142" g_stop="7293" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="402" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E257883" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6807" e_stop="7056"/>
          <exon e_start="7142" e_stop="7293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCACTTTTTCTGAAGAGTTAGGCATGCAGACCTCAGCAAGGTAGCCAAGGTTTCAGTTCACTTATGTAGGTTACAAGTATTTGATCCTAATCCTCGCCCTCTTCATTTTTCCCCTTCACGTAATAGATATCCTAAAGGCTATGGGATTTTAGGAGATGTTGTACACAGCCACATCTTCCAGACAGTGGCCTTGCTTGCTATGGAGCCGCCTGTCACCCTTGATGGTGAAGATGTTCGTTATGAGAAAGTATGTAACCTCTATTCCCTATATGTTACAAAATATTTTCAATATTTTTTGTTGAAATTGGTCATATAAATCATTTACTACTCAGGTTAAGGTTTTGAAATCAATTCGAAAGTTGGAATCATCTGATGTAATTCTTGGGCATAGTGAAGCTGATTCCGGAAGTAACTTCAAGGATATGGAAAACCTTATGCCCACATATTTTGGTGCTGCTTTACACATCGATAACGCACGGTGGGA</genome_strand>
        <mrna_strand>AGGTCACTTTTTCTGAAGAGTTAGGCATGCAGACCTCAGCAAGGTAGCCAAGGTTTCAGTTCACTTATGTAGGTTACAAGTATTTGATCCTAATCCTCGCCCTCTTCATTTTTCCCCTTCACGTAATAGATATCCTAAAGGCTATGGGATTTTAGGAGATGTTGTACACAGCCACATCTTCCAGACAGTGGCCTTGCTTGCTATGGAGCCGCCTGTCACCCTTGATGGTGAAGATGTTCGTTATGAGAAA.....................................................................................GTTAAGGTTTTGAAATCAATTCGAAAGTTGGAATCATCTGATGTAATTCTTGGGCATAGTGAAGCTGATTCCGGAAGTAACTTCAAAGATATGGAAAACCTTATGCCCACATATTTTGGTGCTGCTTTACACATCGATAACGCACGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349820" ref_strand="+" ref_description="SGN-E349820 [cTOS-3-M13]">
      <seq>gagggcataagcaagatcttgtcactaatgagctgattctgcgtgatgtgcctgatgaggccatactcatcagaatcaataacaaaattccaggattaggcatgaacttggaggcttcggaattgaacttgctttataaagacaagtacaatgttgatgtaactgattcgtatgaacaacttcttcatgatgtaatagatggagacaaccatctatttatgagaagcgatgaggttgaagctgcatggaacattttatctccagttttaagtgagttagacaataataatgcgacaattgagcattacgagtttggtagcaagggtccagataaagccggtaatctctgggctaaacatggagtcaagtggttggatgattagtgaatttcacagttatacatcatacaaacactgaaattcctaaagaaggaattattagaaatccactctccatacttatcttagtgatcattgattgagatggaatcattgtgagaaaatttgcacacctgttacacactacagaaaaagttaagactttagattaatgagattgatggcactagcttttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="7370" stop="8650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7670" g_stop="7814" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7815" i_stop="7918" i_length="104">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7919" g_stop="8351" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="578" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E349820" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7670" e_stop="7814"/>
          <exon e_start="7919" e_stop="8351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCATAAGCAAGATCTTGTCACTAATGAGCTGATTCTGCGTGATGTGCCTGATGAGGCCATACTCATCAGAATCAATAACAAAATTCCAGGATTAGGCATGAACTTGGAGGCTTCGGAATTGAACTTGCTTTATAAAGACAAGTAATGTTTTCTATTTTCTTGTGTTAGTAATTTTGTGAATTTAGTGTTGTGCTAGGATCTCCATTTCCATATTTTCTTATTGTTTTCTCTTGTTGATGTACTAGGTACAATGTTGATGTAACTGATTCGTATGAACAACTTCTTCATGATGTAATAGATGGAGACAACCATCTATTTATGAGAAGCGATGAGGTTGAAGCTGCATGGAACATTTTATCTCCAGTTTTAAGTGAGTTAGACAATAATAATGCGACAATTGAGCATTACGAGTTTGGTAGCAAGGGTCCAGATAAAGCCGGTAATCTCTGGGCTAAACATGGAGTCAAGTGGTTGGATGATTAGTGAATTTCACAGTTATACATCATACAAACACTGAAATTCCTAAAGAAGGAATTATTAGAAATCCACTCTCCATACTTATCTTAGTGATCATTGATTGAGATGGAATCATTGTGAGAAAATTTGCACACCTGTTACACACTACAGAAAAAGTTAAGACTTTAGATTAATGAGATTGATGGCACTAGCTTTTGAAAG</genome_strand>
        <mrna_strand>GAGGGCATAAGCAAGATCTTGTCACTAATGAGCTGATTCTGCGTGATGTGCCTGATGAGGCCATACTCATCAGAATCAATAACAAAATTCCAGGATTAGGCATGAACTTGGAGGCTTCGGAATTGAACTTGCTTTATAAAGACAA........................................................................................................GTACAATGTTGATGTAACTGATTCGTATGAACAACTTCTTCATGATGTAATAGATGGAGACAACCATCTATTTATGAGAAGCGATGAGGTTGAAGCTGCATGGAACATTTTATCTCCAGTTTTAAGTGAGTTAGACAATAATAATGCGACAATTGAGCATTACGAGTTTGGTAGCAAGGGTCCAGATAAAGCCGGTAATCTCTGGGCTAAACATGGAGTCAAGTGGTTGGATGATTAGTGAATTTCACAGTTATACATCATACAAACACTGAAATTCCTAAAGAAGGAATTATTAGAAATCCACTCTCCATACTTATCTTAGTGATCATTGATTGAGATGGAATCATTGTGAGAAAATTTGCACACCTGTTACACACTACAGAAAAAGTTAAGACTTTAGATTAATGAGATTGATGGCACTAGCTTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262204" ref_strand="+" ref_description="SGN-E262204 [cLEG-58-N22]">
      <seq>aggaatgcaattcaggtcatatattctcaaggaggaagaaaattttgggtccacaacaccggaccattaggatgcctgcctcaaaaacttactctggttcagaaagtttcttctgatctcgatccgcatggctgtctggcaaattacaactccgctgctaaactgtttaatgaagggcttcgacatttgttgcaagagttgagatctgaaatgaaggatgctactatggtgtatgtagacatatatgctatcaaatatgatcttatagccaactccagcagttatggcttctcaaatccgttaatggcttgctgtggctatggaggtcctccgtacaactaccgtaaaggagtgacatgcggtcagcatgattatcaggtttgcagtgaagggtctgagttcataangttgggatggagttcattataccgaggcagctaatagagttatagcttctaagatactgtcaatggactactccactccacgaattggcttcgatttcttttgccattgattgtcatttgctagaataaagtgcaagcatgaattgatatatgttgcttcagagtattatgaaaaatatttaatttggaaaaatagaaaaaatgattggttataagaaagaggccaggtaaactttttgctctttagttttgaagtcacgatcccccttttcagtccagttttccctgttattttaggcatctataatgtattaattaatgttgtaagcaagtcttatgatattaattattaaacccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="15575" stop="13770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15529" g_stop="15515" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15514" i_stop="15265" i_length="250">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15264" g_stop="14994" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="286" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14993" i_stop="14550" i_length="444">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14549" g_stop="14068" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="771" r_length="485" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E262204" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15529" e_stop="15515"/>
          <exon e_start="15264" e_stop="14994"/>
          <exon e_start="14549" e_stop="14068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATGCAATTCAGGTAATTTCTTTAATCACTAATTGCTCACTTTTCCTTGCTTCCCTGCCGAAAAGAAAAGAGTAAATTAGGTGCAAGAATAGCAGTAGCTCGCTATGTTAAAAAACATGGGAAGGATAAAGTTAGTTAAGAAAGGTGGCATCACAAGGTTTTTTTAAACATCATCACAAGGGCAAAGATTTGCTGAAAGTTAGCTTACTTAATTTTAGGTAGTTCTACAGTCTGTTCATTCCATTAAACTTTCCAAATGTAGGTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATGGTAAGCATAAAATCTGTTCTCGTTTGCTTAATTCCTAGTTCTTGGGTTGTCGATACTCAAAATGAATCTACTAAAGTTGGTACTGAAAGGCTGATATTATTAGTGGAAAAATGGAGGAGATAACATTCCTTGCTCTTGTAAATTTAAATTAAAAAACAAGAAAATGAAGAATTTGACGTCTCGTGACTGAATTCTAAAGGTCTTAGAACTTCATGTTGCAAGGATGATGGCAAGTAGATATAGAATATTCACTTATCTTATACACTAGTGACATTTACTAAGATATCCACTTCTGTGGAAACTTCCGAAGTACTATATTTCTTCTTTTCATACCATCATGTAGAGAGATTCAACGTAGTATATACTCTAGAGCTTCAGCCTGTTTGAAGATAATTGGCAGCTTACTCATACTACTGTTCATATATGATGATTCTACATTTGCAGGCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAA-GTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCAAGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAATTTGGAAAAATAGAAAAAATGATTGGTTATAAGAAAGAGGCCAGGTAAACTTTTTGCTC-TTAGTTTTGAAGTCACGAT-CCCCTTTTCAGTCCAGTTTTCCCTGTTATTTTAGGCATCTATAATGTATTAATTAATGTTGTAAGCAAGTCTTATGATATTAATTATTAAACCCATTAAGT</genome_strand>
        <mrna_strand>AGGAATGCAATTCAG..........................................................................................................................................................................................................................................................GTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAANGTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCAAGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAATTTGGAAAAATAGAAAAAATGATTGGTTATAAGAAAGAGGCCAGGTAAACTTTTTGCTCTTTAGTTTTGAAGTCACGATCCCCCTTTTCAGTCCAGTTTTCCCTGTTATTTTAGGCATCTATAATGTATTAATTAATGTTGTAAGCAAGTCTTATGATATTAATTATTAAACCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257724" ref_strand="+" ref_description="SGN-E257724 [cLEG-39-J15]">
      <seq>catatattctcaaggaggaagaaaattttgggtccacaacaccggaccattaggatgcctgcctcaaaaacttactctggttcagaaagtttcttctgatctcgatccgcatggctgtctggcaaattacaactccgctgctaaactgtttaatgaagggcttcgacatttgttgcaagagttgagatctgaaatgaaggatgctactatggtgtatgtagacatatatgctatcaaatatgatcttatagccaactccagcagttatggcttctcaaatccgttaatggcttgctgtggctatggaggtcctccgtacaactaccgtaaaggagtgacatgcggtcagcatgattatcaggtttgcagtgaagggtctgagttcataagttgggatggagttcattataccgaggcagctaatagagttatagcttctaagatactgtcaatggactactccactccacgaattggcttcgatttcttttgccattgattgtcatttgctagaataaagtgcacgcatgaattgatatatgttgcttcagagtattatgaaaaatatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="15562" stop="13947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15262" g_stop="14994" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14993" i_stop="14550" i_length="444">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14549" g_stop="14247" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="572" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E257724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15262" e_stop="14994"/>
          <exon e_start="14549" e_stop="14247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATGGTAAGCATAAAATCTGTTCTCGTTTGCTTAATTCCTAGTTCTTGGGTTGTCGATACTCAAAATGAATCTACTAAAGTTGGTACTGAAAGGCTGATATTATTAGTGGAAAAATGGAGGAGATAACATTCCTTGCTCTTGTAAATTTAAATTAAAAAACAAGAAAATGAAGAATTTGACGTCTCGTGACTGAATTCTAAAGGTCTTAGAACTTCATGTTGCAAGGATGATGGCAAGTAGATATAGAATATTCACTTATCTTATACACTAGTGACATTTACTAAGATATCCACTTCTGTGGAAACTTCCGAAGTACTATATTTCTTCTTTTCATACCATCATGTAGAGAGATTCAACGTAGTATATACTCTAGAGCTTCAGCCTGTTTGAAGATAATTGGCAGCTTACTCATACTACTGTTCATATATGATGATTCTACATTTGCAGGCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCAAGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAA</genome_strand>
        <mrna_strand>CATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCACGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257853" ref_strand="+" ref_description="SGN-E257853 [cLEG-39-D5]">
      <seq>catatattctcaaggaggaagaaaattttgggtccacaacaccggaccattaggatgcctgcctcaaaaacttactctggttcagaaagtttcttctgatctcgatccgcatggctgtctggcaaattacaactccgctgctaaactgtttaatgaagggcttcgacatttgttgcaagagttgagatctgaaatgaaggatgctactatggtgtatgtagacatatatgctatcaaatatgatcttatagccaactccagcagttatggcttctcaaatccgttaatggcttgctgtggctatggaggtcctccgtacaactaccgtaaaggagtgacatgcggtcagcatgattatcaggtttgcagtgaagggtctgagttcataagttgggatggagttcattatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="15562" stop="14108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15262" g_stop="14994" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14993" i_stop="14550" i_length="444">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14549" g_stop="14408" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="411" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E257853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15262" e_stop="14994"/>
          <exon e_start="14549" e_stop="14408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATGGTAAGCATAAAATCTGTTCTCGTTTGCTTAATTCCTAGTTCTTGGGTTGTCGATACTCAAAATGAATCTACTAAAGTTGGTACTGAAAGGCTGATATTATTAGTGGAAAAATGGAGGAGATAACATTCCTTGCTCTTGTAAATTTAAATTAAAAAACAAGAAAATGAAGAATTTGACGTCTCGTGACTGAATTCTAAAGGTCTTAGAACTTCATGTTGCAAGGATGATGGCAAGTAGATATAGAATATTCACTTATCTTATACACTAGTGACATTTACTAAGATATCCACTTCTGTGGAAACTTCCGAAGTACTATATTTCTTCTTTTCATACCATCATGTAGAGAGATTCAACGTAGTATATACTCTAGAGCTTCAGCCTGTTTGAAGATAATTGGCAGCTTACTCATACTACTGTTCATATATGATGATTCTACATTTGCAGGCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATAC</genome_strand>
        <mrna_strand>CATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723693" ref_strand="+" ref_description="SGN-E723693 [FC21BE08]">
      <seq>atttttttcaattattttaataatattccaaaattttactcatcaataatgaagaatcccaatcagtagtcttctaccattataatcaccttttgatcagataagaccacttgcttcagtcctttattcttttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcaaacactgcaagctggtttaagcggtggtgactcgaagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcaaaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25483" stop="31140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25783" g_stop="25939" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="445" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="550" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="598" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30840" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="715" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E723693" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25783" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTAATTATTTTAATAATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGT</genome_strand>
        <mrna_strand>ATTTTTTTCAATTATTTTAATAATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAAACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGAAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAA............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699520" ref_strand="+" ref_description="SGN-E699520 [FA10BE09]">
      <seq>catattccaaaattttactcatcaataatgaagaatcccaatcagtagtcttctaccattataatcaccttttgatcagataagaccacttgcttcagtcctttattcttttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctcctgatgatgcaggccggtttgtatgcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25505" stop="31118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25804" g_stop="25939" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="424" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="529" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="577" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30818" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="673" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E699520" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25804" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCT-CTGATGATGCAGGCCGGTTTGTATGCAATTA</genome_strand>
        <mrna_strand>CATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCCTGATGATGCAGGCCGGTTTGTATGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724219" ref_strand="+" ref_description="SGN-E724219 [FC23BG09]">
      <seq>aatcccaatcagtagtcttctaccattataatcaccttttgatcagataagaccacttgcttcagtcctttattcttttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaaaaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcaaacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccataaagaatcaggctgtcaatgaagctactttccgttgtccaaatgaaatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25537" stop="31098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25837" g_stop="25939" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="391" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="496" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="544" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30798" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="619" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E724219" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25837" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCA</genome_strand>
        <mrna_strand>AATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAAAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAAACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAAAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAAATGAAATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347388" ref_strand="+" ref_description="SGN-E347388 [cTOF-33-N12]">
      <seq>tcctttattcttttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaacctagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25602" stop="31251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25902" g_stop="25939" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="326" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="431" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="479" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30951" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="706" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E347388" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25902" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCC</genome_strand>
        <mrna_strand>TCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACC-TAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299737" ref_strand="+" ref_description="SGN-E299737 [cLEW-1-F24]">
      <seq>ttttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25612" stop="31126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25912" g_stop="25939" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="316" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="421" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="469" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30826" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="572" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E299737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25912" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACT</genome_strand>
        <mrna_strand>TTTTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305312" ref_strand="+" ref_description="SGN-E305312 [cLEX-15-J7]">
      <seq>ttttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25612" stop="29358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25912" g_stop="25939" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="316" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="421" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29058" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="464" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E305312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25912" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAAC</genome_strand>
        <mrna_strand>TTTTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307451" ref_strand="+" ref_description="SGN-E307451 [cLEY-12-N11]">
      <seq>ttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25614" stop="31138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25914" g_stop="25939" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="314" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="419" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="467" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30838" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="582" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E307451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25914" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGC</genome_strand>
        <mrna_strand>TTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334503" ref_strand="+" ref_description="SGN-E334503 [cTOD-23-H15]">
      <seq>ttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccttagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaacaaggtattggcaaagatgggatatgaagtaatgacctctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25614" stop="31093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25914" g_stop="25939" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="314" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="419" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="467" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30793" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="537" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E334503" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25914" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATG</genome_strand>
        <mrna_strand>TTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCTTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGAACAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343310" ref_strand="+" ref_description="SGN-E343310 [cTOF-17-F2]">
      <seq>tctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcangccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25619" stop="31173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25919" g_stop="25939" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="309" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="414" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="462" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30873" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="612" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E343310" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25919" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTT</genome_strand>
        <mrna_strand>TCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCANGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296823" ref_strand="+" ref_description="SGN-E296823 [cLET-26-J5]">
      <seq>ctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25620" stop="27102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25920" g_stop="25939" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="308" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E296823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25920" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG</genome_strand>
        <mrna_strand>CTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713923" ref_strand="+" ref_description="SGN-E713923 [FB10AB08]">
      <seq>ctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25622" stop="31402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25922" g_stop="25939" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="306" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="411" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="459" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="31097" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="833" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="836" polyA_stop="852"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E713923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25922" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGT</genome_strand>
        <mrna_strand>CTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711406" ref_strand="+" ref_description="SGN-E711406 [FB01DF12]">
      <seq>tttcagtttcgtccgtttaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaaaaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccctgggtggtttatctcgttgatttggagatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26203" stop="31456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26502" g_stop="26795" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="399" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="447" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="31156" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="880" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E711406" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26502" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTT</genome_strand>
        <mrna_strand>TTTCAGTTTCGTCCGTTTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAAAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCCTGGGTGGTTTATCTCGTTGATTTGGAGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286120" ref_strand="+" ref_description="SGN-E286120 [cLES-13-J7]">
      <seq>tttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26203" stop="29122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26502" g_stop="26795" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28822" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="314" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E286120" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26502" e_stop="26795"/>
          <exon e_start="28803" e_stop="28822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAG</genome_strand>
        <mrna_strand>TTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347324" ref_strand="+" ref_description="SGN-E347324 [cTOF-33-B3]">
      <seq>tctctttcagctttcaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26204" stop="31143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26504" g_stop="26795" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="396" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="444" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="30843" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="564" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E347324" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26504" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTT</genome_strand>
        <mrna_strand>TCTCTTTCAGCTTTC-AGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708168" ref_strand="+" ref_description="SGN-E708168 [FA35AB06]">
      <seq>ctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26203" stop="31462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="304" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="409" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="457" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="31162" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="896" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E708168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCC</genome_strand>
        <mrna_strand>TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701278" ref_strand="+" ref_description="SGN-E701278 [FA15CB04]">
      <seq>tttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaagttgatctggatataaatgtaatgctttaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26203" stop="31362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="301" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="406" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="454" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="31062" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="793" r_length="339" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="794" polyA_stop="807"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E701278" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACA</genome_strand>
        <mrna_strand>TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAAGTTGATCTGGATATAAATGTAATGCTTTAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336453" ref_strand="+" ref_description="SGN-E336453 [cTOE-4-K18]">
      <seq>tttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaataaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26208" stop="29196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28896" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="381" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E336453" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGAT</genome_strand>
        <mrna_strand>TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAAT-AAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714555" ref_strand="+" ref_description="SGN-E714555 [FB11DB04]">
      <seq>cgtctgtctaggggatacatgggagtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatatagaatcatgctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcacaaagtacctattgtccctgcagatggggcaatttcacgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactactcctcgacttctgtgtctggaagtgaatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctatttgcgagcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26211" stop="31476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26511" g_stop="26618" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26619" i_stop="26686" i_length="68">
            <donor d_prob="0.268" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26687" g_stop="26795" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="218" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="323" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="371" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="31179" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="827" r_length="456" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E714555" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26511" e_stop="26618"/>
          <exon e_start="26687" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTGTCTAGGGGATACATGGG-GTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTT</genome_strand>
        <mrna_strand>CGTCTGTCTAGGGGATACATGGGAGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATT....................................................................CATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATATAGAATCATGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAC............................................................................................................AAAGTACCTATTGTCCCTGCAGATGGGGCAATTTCACGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTACTCCTCGACTTCTGTGTCTGGAAGTGAATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308665" ref_strand="+" ref_description="SGN-E308665 [cLEZ-13-A21]">
      <seq>ggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26223" stop="29143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26523" g_stop="26795" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28843" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="314" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E308665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26523" e_stop="26795"/>
          <exon e_start="28803" e_stop="28843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCAT</genome_strand>
        <mrna_strand>GGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318521" ref_strand="+" ref_description="SGN-E318521 [cTOB-10-I6]">
      <seq>acatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcatacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatacagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcaaaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggccaagatgggatatgaagtaatgacctctgatgatgcaagccgggttgtatgcaattatgtatactaccattccttgcgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26227" stop="31145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26527" g_stop="26795" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="374" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="422" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="30845" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="544" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E318521" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26527" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGC</genome_strand>
        <mrna_strand>ACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCATACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATACAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAA............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCCAAGATGGGATATGAAGTAATGACCTCTGATGATGCAAGCCGGGTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688122" ref_strand="+" ref_description="SGN-E688122 [T3_tus_85_M01]">
      <seq>tggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcatacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcanatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26230" stop="31402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26530" g_stop="26795" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="371" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="419" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="31108" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="804" r_length="385" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E688122" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26530" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATC</genome_strand>
        <mrna_strand>TGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCATACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCANATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336936" ref_strand="+" ref_description="SGN-E336936 [cTOE-5-I21]">
      <seq>ggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctctttcggtggaggaaatgaccaaagtattggcaaagatgggatatgaagtaatgacctctgatgatgcaagccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcattatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagaccaggagacgccaaatgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26231" stop="31221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26531" g_stop="26795" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="370" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="418" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="30917" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="612" r_length="194" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E336936" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26531" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAAT</genome_strand>
        <mrna_strand>GGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTTCGGTGGAGGAAATGACCAAAGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAAGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATTATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACCAGGAGACGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338616" ref_strand="+" ref_description="SGN-E338616 [cTOE-15-O8]">
      <seq>agggtctgaagggccttcacctgtgatcgtaccatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatacctgcaggccagggagccctagttcccttatatcagaccacctgcaagctggtttaagcggtggtgacctcggagtcatctaattccaagagagttatttgggtccacctttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaaccgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccctgcgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26232" stop="31144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26531" g_stop="26795" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="376" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="425" r_length="49" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="30844" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="546" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E338616" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26531" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="30844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTCTGAAGGGCCTTCACCTGTGATCGTA-CATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATA-CTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGA-CA-CTGCAAGCTGGTTTAAGCGGTGGTGA-CTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACA-CTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAA-CGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTG</genome_strand>
        <mrna_strand>AGGGTCTGAAGGGCCTTCACCTGTGATCGTACCATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACCTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACCACCTGCAAGCTGGTTTAAGCGGTGGTGACCTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACCTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACCGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCCTGCGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337997" ref_strand="+" ref_description="SGN-E337997 [cTOE-14-A18]">
      <seq>gggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcaggattcttgatactgcaagccaaggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26232" stop="29203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26532" g_stop="26795" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28903" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="365" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E337997" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26532" e_stop="26795"/>
          <exon e_start="28803" e_stop="28903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACC</genome_strand>
        <mrna_strand>GGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGGATTCTTGATACTGCAAGCCAAGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712108" ref_strand="+" ref_description="SGN-E712108 [FB03DF10]">
      <seq>catgaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26276" stop="31387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26576" g_stop="26795" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="325" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="373" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="31088" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="738" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E712108" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26576" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGC</genome_strand>
        <mrna_strand>CATGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734519" ref_strand="+" ref_description="SGN-E734519 [LB12DE08]">
      <seq>cagtcactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctatttgcgagcaaacttacagctttctgtatctcctaatggatatgataggaacttgtcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26430" stop="31524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26730" g_stop="26795" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="171" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="219" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="31224" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="720" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E734519" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26730" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTT</genome_strand>
        <mrna_strand>CAGTCACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734833" ref_strand="+" ref_description="SGN-E734833 [LB13CH04]">
      <seq>agacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctatttgcgagcaaacttacagctttctgtatctcctaatggatatgataggaacttgtccttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="26431" stop="31527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26731" g_stop="26795" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="170" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="218" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30724" g_stop="31231" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="726" r_length="508" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E734833" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26731" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTA</genome_strand>
        <mrna_strand>AGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309365" ref_strand="+" ref_description="SGN-E309365 [cLEY-22-E8]">
      <seq>tgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcattatggtgtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="28556" stop="31402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28856" g_stop="28907" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="100" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30724" g_stop="31103" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="481" r_length="381" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31104" i_stop="31283" i_length="180">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31284" g_stop="31291" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="489" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E309365" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28856" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31103"/>
          <exon e_start="31284" e_stop="31291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCA-TATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTATGTTCTTGCATTAGTGTCTTTCTGTTCTTTTGGCTGATCAAATATTGGGCAGAAAATTAC</genome_strand>
        <mrna_strand>TGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATTATGGTGTGTAAAA....................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714147" ref_strand="+" ref_description="SGN-E714147 [FB10CF03]">
      <seq>atgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctannaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="28708" stop="31464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28890" g_stop="28907" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="66" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30724" g_stop="31163" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="506" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="529"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E714147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28890" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCT</genome_strand>
        <mrna_strand>ATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712992" ref_strand="+" ref_description="SGN-E712992 [FB06BF10]">
      <seq>caatctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctatttgcgagcaaacttacagctttctgtatctcctaatggatatgatacgaacttgtccttcaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="28705" stop="31531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28899" g_stop="28907" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="57" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30724" g_stop="31232" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="566" r_length="509" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31233" i_stop="31283" i_length="51">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31284" g_stop="31292" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="575" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E712992" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28899" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31232"/>
          <exon e_start="31284" e_stop="31292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTATGTTCTTGCATTAGTGTCTTTCTGTTCTTTTGGCTGATCAAATATTGGGCAGAAAATTACA</genome_strand>
        <mrna_strand>CAATCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATACGAACTTGTCCTTCAATTTAA...................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315246" ref_strand="+" ref_description="SGN-E315246 [cTOA-24-M17]">
      <seq>tggaaatagacacagagcactgagctgaggaagtaacttgtaaacacaaagtcataagctttttggaagctcaagattgttggttcactgtccatgcttatacatgctaaaccttgagttaaatgcttaatattccagcctcaatggttctctttccttttctggtcatattcttcataatcctttaaatgcaccaggaccggatggaaagatatggacctatgttgcgagggttgattcttcattttatgatatacagttcgaatccaatttcttctctcaagtattccgagctcatgaactttttaaagatttttattcatttatttttactgaaaaatattctagtttccagggattatgacattgtgaactgttaccaagaccaataaccgtggcttctaaattatttcacttttgctttgcttcatactatctcagtcacttttgtgacttccttgaggagggaggagctgatgaataacgaagtggtgtagtgcttgttggaaaatatttcctatcttgaatagttggagttgccatccaagctaaacactaatttctccatcttatatatacatgattttccttgatatgttttcatttccatacctttatttgattcagggatccctgcataatcagttctttcaattttccctatctacctaagaacggacggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="29262" stop="30548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29562" g_stop="30248" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E315246" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29562" e_stop="30248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTG</genome_strand>
        <mrna_strand>TGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAA-ATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217042" ref_strand="+" ref_description="SGN-E217042 [cLEL-1-M18](-)">
      <seq>aggtattggcaaagatgggatatgaagtaatgccctctgatgatgcaggccggtttgtatgcaattatgtatactcccatcccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctacccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttcccttgttatttatgctgtgtatgcggaagaaggttgatctgcatataaatgtaatgctttactccccagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="30452" stop="31412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30752" g_stop="31112" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E217042" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30752" e_stop="31112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCC</genome_strand>
        <mrna_strand>AGGTATTGGCAAAGATGGGATATGAAGTAATGCCCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTCCCATCCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTACCCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTCCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGCATATAAATGTAATGCTTTACTCCCCAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222527" ref_strand="+" ref_description="SGN-E222527 [cLEL-16-G14](-)">
      <seq>taatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctatttgcgagcaaacttacagctttctgtatctcctaatggatatgataggaacttgtccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="30479" stop="31527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30779" g_stop="31232" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31233" i_stop="31283" i_length="51">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31284" g_stop="31292" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="463" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E222527" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30779" e_stop="31232"/>
          <exon e_start="31284" e_stop="31292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTATGTTCTTGCATTAGTGTCTTTCTGTTCTTTTGGCTGATCAAATATTGGGCAGAAAATTACA</genome_strand>
        <mrna_strand>TAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTAAAAAAAA...................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222796" ref_strand="+" ref_description="SGN-E222796 [cLEL-16-I18](-)">
      <seq>gtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctatttgcgagcaaacttacagctttctgtatctcctaatggatatgataggaacttgtccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="30557" stop="31527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30857" g_stop="31232" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31233" i_stop="31283" i_length="51">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31284" g_stop="31292" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="385" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E222796" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30857" e_stop="31232"/>
          <exon e_start="31284" e_stop="31292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTATGTTCTTGCATTAGTGTCTTTCTGTTCTTTTGGCTGATCAAATATTGGGCAGAAAATTACA</genome_strand>
        <mrna_strand>GTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTAAAAAAAA...................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376569" ref_strand="+" ref_description="SGN-E376569 [TUS-18-A16](-)">
      <seq>ttcccgggcatgtgtatccaacattacagtggaagattcaactattaagtattcaagacaatggtgttaggatcaagacagggcaaggaggatttgggacagtatccaacattaatttcaacaacattagaatggaaagtgttcgaaatccgataattttagatcaatattactgcagcacaaagagctgtgcaaatcagacttcagcagtgtacatatctgatgtgatttattcaaacataaagggtacttatgatgtgagaagtccaccaatgcatttggcttgtagtaacagtgtcccttgcacaaatttgacttttttggatgtggagttatatcctgctcaaggacaaaaaatcttggaaccattttgttggaatgcttatggtgctctaattactcttacaattccaccagttttttgcttgttggaaggcacacctcagtcattaccaagtaatgatcttgatcaatgctgatacatgatttgctaagaaatacaaacttgtaaaagatggagtacttaatagtatgtattaaagttttagctcttctagtcttgttccagagaggactaaaacttaactgtaagcatgtatccattttgttaatgatataaaagtagtaataatttaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="33434" stop="32197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33134" g_stop="32488" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E376569" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33134" e_stop="32488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCGGGCATGTGTATCCAACATTACAGTGGAAGATTCAACTATTAAGTATTC-AGACAATGGTGTTAGGATCAAGACATGGCAAGGAGGATTTGGGACAGTATCCAACATTAATTTCAACAACATTAGAATGGAAAGTGTTCGAAATCCGATAATTTTAGATCAATATTACTGCAGCACAAAGAGCTGTGCAAATCAGACTTCAGCAGTGTACATATCTGATGTGATTTATTCAAACATAAAGGGTACTTATGATGTGAGAAGTCCACCAATGCATTTGGCTTGTAGTAACAGTGTCCCTTGCACAAATTTGACTTTTTTGGATGTGGAGTTATATCCTGCTCAAGGACAAAAAATCTTGGAACCATTTTGTTGGAATGCTTATGGTGCTCTAATTACTCTTACAATTCCACCAGTTTTTTGCTTGTTGGAAGGCACACCTCAGTCATTACCAAGTAATGATCTTGATCAATGCTGATACATGATTTGCTAAGAAATACAAACTTGTAAAAGATGGAGTACTTAATAGTATGTATTAAAGTTTTAGCTCTTCTAGTCTTGTTCCAGAGAGGACTAAAACTTAACTGTAAGCATGTATCCATTTTGTTAATGATATAAAAGTAGT-ATATTTTAAATCAGTTTTAGAA</genome_strand>
        <mrna_strand>TTCCCGGGCATGTGTATCCAACATTACAGTGGAAGATTCAACTATTAAGTATTCAAGACAATGGTGTTAGGATCAAGACAGGGCAAGGAGGATTTGGGACAGTATCCAACATTAATTTCAACAACATTAGAATGGAAAGTGTTCGAAATCCGATAATTTTAGATCAATATTACTGCAGCACAAAGAGCTGTGCAAATCAGACTTCAGCAGTGTACATATCTGATGTGATTTATTCAAACATAAAGGGTACTTATGATGTGAGAAGTCCACCAATGCATTTGGCTTGTAGTAACAGTGTCCCTTGCACAAATTTGACTTTTTTGGATGTGGAGTTATATCCTGCTCAAGGACAAAAAATCTTGGAACCATTTTGTTGGAATGCTTATGGTGCTCTAATTACTCTTACAATTCCACCAGTTTTTTGCTTGTTGGAAGGCACACCTCAGTCATTACCAAGTAATGATCTTGATCAATGCTGATACATGATTTGCTAAGAAATACAAACTTGTAAAAGATGGAGTACTTAATAGTATGTATTAAAGTTTTAGCTCTTCTAGTCTTGTTCCAGAGAGGACTAAAACTTAACTGTAAGCATGTATCCATTTTGTTAATGATATAAAAGTAGTAATAATTTAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376570" ref_strand="+" ref_description="SGN-E376570 [TUS-18-A16]">
      <seq>aaactacttgcatagtctttccaacttgtttacaagtgctggtttttagttggtgggacataaacaacttcatttttgttgtttttttgacttccaagaacgtgggtgccttgccttatatccttctaacttctgaaaaaacctactgataatgacaaaaataagcatgatctttttagtctagtgagaattgacattttagttttctatatatgattagtgaggggtctagtaaaaacaagtagccaaattgtgttacttcacttcccttaagttctataagtactctgttttagtttaaaaaagctatactatctggacacaaattatggaattcactatattttgcttcttggttttttctgttttcttgatttcctatgttttttcagttcatggtaggttttatgattaccccaaagtgtcgcgttttcgtgcattgtcacaaatatcaatgccacctttccctgcccctgcccctggccctggccctgcccctgctcctgaacctaagggtgatccaaatactgagaatgtgaagaattcatcaaatgattatgcggcaggcattttcaatgtgttgtcttatggggctgctggtgatggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="35445" stop="34236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35145" g_stop="34536" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E376570" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35145" e_stop="34536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACTTGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGGTCACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATAGGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTAGCTGGACACAAATTATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATGCAGCAGGCATTTTCAATGTGTTGTCTTATGGGGCTGTTGGTGATGGTGT</genome_strand>
        <mrna_strand>AAACTACTTGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGG-GACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATATGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTATCTGGACACAAATTATGGAATTCACTATATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAATACTGAGAATGTGAAGAATTCATCAAATGATTATGCGGCAGGCATTTTCAATGTGTTGTCTTATGGGGCTGCTGGTGATGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208429" ref_strand="+" ref_description="SGN-E208429 [cLEC-37-P7]">
      <seq>gaaactacttgcatagtctttccaacttgtttacaagtgctggtttttagttggtggtcacataaacaacttcatttttgttgtttttttgacttccaagaacgtgggtgccttgccttatatccttctaacttctgaaaaaacctactgataatgacaaaaataagcatgatctttttagtctagtgagaattgacattttagttttctatataggattagtgaggggtctagtaaaaacaagtagccaaattgtgttacttcacttcccttaagttctataagtactctgttttagtttaaaaaagctatactagctggacacaaattatggaattcactagattttgcttcttggttttttctgttttcttgatttcctatgttttttcagttcatggtaggttttatgattaccccaaagtgtcgcgttttcgtgcattgtcacaaatatcaatgccacctttccctgcccctgcccctggccctggccctgcccctgctcctgaacctaagggtgatccaaaaactgagaatgtgaagaattcatcaaatgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="35446" stop="34285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35146" g_stop="34585" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E208429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35146" e_stop="34585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTACTTGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGGTCACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATAGGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTAGCTGGACACAAATTATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATG</genome_strand>
        <mrna_strand>GAAACTACTTGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGGTCACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATAGGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTAGCTGGACACAAATTATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253749" ref_strand="-" ref_description="SGN-E253749 [cLEG-32-E16]">
      <seq>ccggtcattaattcccatgcgattattgcgataaggaattccaggataccgcagctgctcggaggcgtcatcttcaaggtgttcaacatcaaagagccaaggctctttggtacgactccttgcgcaatccccaattatttaacgatccggactcgttcggtaaaggagtctgcaatcactttgttcgaacggggtattgccagtatggggactcctgcaaatattatcatcccaagcaaaaccctcaaactgtgaaccaaacgggactccctccaggggaaaatagtagagagggtttccattcaagtagtcaaccttttggttcagcctcttttccaggtgatgtgttcagagaaaaggccggagcatcactgagcaatctgcctccctctctaaggcctccgcctgagggtggttatccacctctcccatttgttgagtggggataggtctgccacctcatttactactcttgtcagatatgctttagagtgggtggactgaagatgtagattgccctaaatataaatactatattgactatgaaacaaatagatgactacaagttcagttgagtgatttgcacttagaaacaggaaattaaaagttatgaaagccttaaaaatcgccggtttcaatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="40854" stop="37901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40562" g_stop="40436" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40435" i_stop="40362" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40361" g_stop="40297" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="191" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40296" i_stop="39558" i_length="739">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39557" g_stop="39473" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="276" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39472" i_stop="38714" i_length="759">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38713" g_stop="38651" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="339" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38650" i_stop="38510" i_length="141">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38509" g_stop="38208" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="642" r_length="303" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="657"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E253749" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253749" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40562" e_stop="40436"/>
          <exon e_start="40361" e_stop="40297"/>
          <exon e_start="39557" e_stop="39473"/>
          <exon e_start="38713" e_stop="38651"/>
          <exon e_start="38509" e_stop="38208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGGGTAAATACTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCAGTAAGTTTCTCCTTTTTCTTCTTCTTAGTAAATTAATTTCCAAGTGTTGATGAACGATTTTTCTGGGAGAACAGATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACGGTACTGCTCTTATCTTCGTATTTTAGTATGCAATATTTTGAGACACGGAGTCAGAAGTTGTATTACATTTTTGGGTTGTCCATTTTATTGCAACTGATGGAAGAAGAAACAAAAGTGATAGATGAGTCAGATTTTCGCATTTCATCAATCAATATTAGACTGGTTCGAGTTGGTTATATGAATCATCTGTATCTTTTATTCAGAAGATTCATCATCTTTTGAGTTCAATTGATGCATTTCATAATTACCATTCAAAAAAAAAAAAGAGAGACTGTTGCAATCTAAGATACTTTGAAGTAGAATTTGAGGTTTCTAGGCCTTTTACTTTAATTTATAAGGTTTTGTAAGGCCTATAGGCTATAATCTTCTCAGAATACGGCTAAGTTGTATGTCTCCAACTTGATGAGCATGGTATGAATTGTCGTAGGTGAATTTCATAATCTGCTAGCTTAGCTTAATTTGTTATTTTAGCAGATTCACATCATTATGGTTGAAAAAGTTTAGTAATATGCTGATAAGTGATAAACATTACTGATAGTACTTCTATTCACTAAGTTATGAACATAAGTGAATGTTGCTTTACTTCATCCACCTGAAGTATTGCCCAAGACAAACAAAATGTTGAAGGAGCAACAACAGTGGATTGGGGATGGTGAAGTCTAAACTCTAAATAAATACTATGTGTTTTACACCCTTTATTGGATAATGTTGTTGATCATATCTTTTACATGTATCAAAGGGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAGGTATCTTTCTCGCATGTTTTGAGTATATTCATATTCAAGATTTTACTGTCAACCAACTAATGTCTTAAATCTTGAACTATATTAACCACCACGATAACTATTTAAACTTACTGCCCTCAAAAAGTATTTTTGTTTCTTATATTAACAACCATGATAATTTCTGTTGTTTGCTGCTTCATGAAATGGTTGTCCTTGTCACTCATCCAAAAGATCTCCTGGTTTTTGTCAGATGTTATTAAAATCTCAAAGGTATATCTTAGGAAAGTAATCTAACTTTTGGGAAGTCAGAGCTTTAAGAAGAACTGGGGAATCAATCTTTTGAATTTCTTGGATTTGGCAATGTGCAGAATTAACTTGTGCAAGCGGTATCCTGTGCTATTTTTTTAAAAAAACATTGTTAATAGTATTGTGTACATTTTGCCAACGAACTTATCTTGTTATGCTACAAGTTCTTCATTCAAGATCTCGAAATTTATGTACCAACTCTTTTGAAGTTCTTTGTCCTGTAGTTTTAAGTTTTCATTCCTAGTAGTTATTCTAAAAGATTTGAGTGACCTGATTAGTTTTTTTAAGTTGTACAGTATTAATTCTTGAAATGGATATACACTTGAATTGGGAGTATACTTGATTGTCAATCATATCCTATGAATTTGAATAGCTGTGGAAGAACACAGTGAATGCAAACTATGAATTTGAATAGCTGTGGAGGAACACAGTGCATGCAAACTTTTGATTTCCTTTTGTTTATCCAATTCTCAGGGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAGGCAAGCATTGCTTTTGCATGTATTTTCTTCCTATTTTCACTTAAAATGTCAGGTGTTGTGTTTTTCCAATTCCCCAGTTAATCTGCTGATGCTCTTGGTAGTTTTTCTTCTAAATCTAGTTGTGATGTGTGGTTGTAGCAGGTGATGTGTTCAGAGAAAAGGCCGGAGCATCACTGAGCAATCTGCCTCCCTCTCTAAGGCCTCCGCCTGAGGGTGGTTATCCACCTCTCCCATTTGTTGAGTGGGGATAGGTCTGCCACCTCATTTACTACTCTTGTCAGATATGCTTTAGAGTGGGTGGACTGAAGATGTAGATTGCCCTAAATATAAATACTATATTGACTATGAAACAAATAGATGACTACAAGTTCAGTTGAGTGATTTGCACTTAGAAACAGGAAATTAAAAGTTATGAAAGATTTAAAAAT-GTTGGTTTCAATTTA</genome_strand>
        <mrna_strand>CCGGTCATTAATTCCCA-TGCGATTATTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCA..........................................................................ATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAG.............................................................................................................................................GTGATGTGTTCAGAGAAAAGGCCGGAGCATCACTGAGCAATCTGCCTCCCTCTCTAAGGCCTCCGCCTGAGGGTGGTTATCCACCTCTCCCATTTGTTGAGTGGGGATAGGTCTGCCACCTCATTTACTACTCTTGTCAGATATGCTTTAGAGTGGGTGGACTGAAGATGTAGATTGCCCTAAATATAAATACTATATTGACTATGAAACAAATAGATGACTACAAGTTCAGTTGAGTGATTTGCACTTAGAAACAGGAAATTAAAAGTTATGAAAGCCTTAAAAATCGCCGGTTTCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714535" ref_strand="+" ref_description="SGN-E714535 [FB11CH07]">
      <seq>ctactgcgattactgcgataaggaattccaggataccgcagctgctcggaggcgtcatcttcaaggtgttcaacatcaaagagccaaggctctttggtacgactccttgcgcaatccccaattatttaacgatccggactcgttcggtaaaggagtctgcaatcactttgttcgaacggggtattgccagtatggggactcctgcaaatattatcatcccaagcaaaaccctcaaactgtgaaccaaacgggactccctccaggggaaaatagtagagagggtttccattcaagtagtcaaccttttggttcagcctcttttccaggtgatgtgttcagagaaaaggccggagcatcactgagcaatctgcctccctctctaaggcctccgcctgagggtggttatccacctctcccatttgttgagtggggataggtctgccacctcatttactactcttgtcagatatgctttagagtgggtggactgaagatgtagattgccctaaatataaatactatattgactatgaaacaaatagatgactacaagttcagttgagtgatttgcacttagaaacaggaaattaaaagttatgaaagatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="40848" stop="37924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40548" g_stop="40436" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40435" i_stop="40362" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40361" g_stop="40297" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="178" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40296" i_stop="39558" i_length="739">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39557" g_stop="39473" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="263" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39472" i_stop="38714" i_length="759">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38713" g_stop="38651" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38650" i_stop="38510" i_length="141">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38509" g_stop="38218" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="618" r_length="292" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E714535" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40548" e_stop="40436"/>
          <exon e_start="40361" e_stop="40297"/>
          <exon e_start="39557" e_stop="39473"/>
          <exon e_start="38713" e_stop="38651"/>
          <exon e_start="38509" e_stop="38218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCAGTAAGTTTCTCCTTTTTCTTCTTCTTAGTAAATTAATTTCCAAGTGTTGATGAACGATTTTTCTGGGAGAACAGATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACGGTACTGCTCTTATCTTCGTATTTTAGTATGCAATATTTTGAGACACGGAGTCAGAAGTTGTATTACATTTTTGGGTTGTCCATTTTATTGCAACTGATGGAAGAAGAAACAAAAGTGATAGATGAGTCAGATTTTCGCATTTCATCAATCAATATTAGACTGGTTCGAGTTGGTTATATGAATCATCTGTATCTTTTATTCAGAAGATTCATCATCTTTTGAGTTCAATTGATGCATTTCATAATTACCATTCAAAAAAAAAAAAGAGAGACTGTTGCAATCTAAGATACTTTGAAGTAGAATTTGAGGTTTCTAGGCCTTTTACTTTAATTTATAAGGTTTTGTAAGGCCTATAGGCTATAATCTTCTCAGAATACGGCTAAGTTGTATGTCTCCAACTTGATGAGCATGGTATGAATTGTCGTAGGTGAATTTCATAATCTGCTAGCTTAGCTTAATTTGTTATTTTAGCAGATTCACATCATTATGGTTGAAAAAGTTTAGTAATATGCTGATAAGTGATAAACATTACTGATAGTACTTCTATTCACTAAGTTATGAACATAAGTGAATGTTGCTTTACTTCATCCACCTGAAGTATTGCCCAAGACAAACAAAATGTTGAAGGAGCAACAACAGTGGATTGGGGATGGTGAAGTCTAAACTCTAAATAAATACTATGTGTTTTACACCCTTTATTGGATAATGTTGTTGATCATATCTTTTACATGTATCAAAGGGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAGGTATCTTTCTCGCATGTTTTGAGTATATTCATATTCAAGATTTTACTGTCAACCAACTAATGTCTTAAATCTTGAACTATATTAACCACCACGATAACTATTTAAACTTACTGCCCTCAAAAAGTATTTTTGTTTCTTATATTAACAACCATGATAATTTCTGTTGTTTGCTGCTTCATGAAATGGTTGTCCTTGTCACTCATCCAAAAGATCTCCTGGTTTTTGTCAGATGTTATTAAAATCTCAAAGGTATATCTTAGGAAAGTAATCTAACTTTTGGGAAGTCAGAGCTTTAAGAAGAACTGGGGAATCAATCTTTTGAATTTCTTGGATTTGGCAATGTGCAGAATTAACTTGTGCAAGCGGTATCCTGTGCTATTTTTTTAAAAAAACATTGTTAATAGTATTGTGTACATTTTGCCAACGAACTTATCTTGTTATGCTACAAGTTCTTCATTCAAGATCTCGAAATTTATGTACCAACTCTTTTGAAGTTCTTTGTCCTGTAGTTTTAAGTTTTCATTCCTAGTAGTTATTCTAAAAGATTTGAGTGACCTGATTAGTTTTTTTAAGTTGTACAGTATTAATTCTTGAAATGGATATACACTTGAATTGGGAGTATACTTGATTGTCAATCATATCCTATGAATTTGAATAGCTGTGGAAGAACACAGTGAATGCAAACTATGAATTTGAATAGCTGTGGAGGAACACAGTGCATGCAAACTTTTGATTTCCTTTTGTTTATCCAATTCTCAGGGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAGGCAAGCATTGCTTTTGCATGTATTTTCTTCCTATTTTCACTTAAAATGTCAGGTGTTGTGTTTTTCCAATTCCCCAGTTAATCTGCTGATGCTCTTGGTAGTTTTTCTTCTAAATCTAGTTGTGATGTGTGGTTGTAGCAGGTGATGTGTTCAGAGAAAAGGCCGGAGCATCACTGAGCAATCTGCCTCCCTCTCTAAGGCCTCCGCCTGAGGGTGGTTATCCACCTCTCCCATTTGTTGAGTGGGGATAGGTCTGCCACCTCATTTACTACTCTTGTCAGATATGCTTTAGAGTGGGTGGACTGAAGATGTAGATTGCCCTAAATATAAATACTATATTGACTATGAAACAAATAGATGACTACAAGTTCAGTTGAGTGATTTGCACTTAGAAACAGGAAATTAAAAGTTATGAAAGATTTAAAAATGTTGG</genome_strand>
        <mrna_strand>CTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCA..........................................................................ATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAG.............................................................................................................................................GTGATGTGTTCAGAGAAAAGGCCGGAGCATCACTGAGCAATCTGCCTCCCTCTCTAAGGCCTCCGCCTGAGGGTGGTTATCCACCTCTCCCATTTGTTGAGTGGGGATAGGTCTGCCACCTCATTTACTACTCTTGTCAGATATGCTTTAGAGTGGGTGGACTGAAGATGTAGATTGCCCTAAATATAAATACTATATTGACTATGAAACAAATAGATGACTACAAGTTCAGTTGAGTGATTTGCACTTAGAAACAGGAAATTAAAAGTTATGAAAGATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247813" ref_strand="+" ref_description="SGN-E247813 [cLEF-42-P24]">
      <seq>actactgcgattactgcgataaggaattcgaggataccgcagctgctcggaggcgtcatcttcaaggtgttcaacatcaaagagccaaggctctttggtacgactccttgcgcaatccccaattatttaacgatccggactcgttcggtaaaggagtctgcaatcactttgttcgaacggggtattgccagtatggggactcctgcaaatattatcatcccaagcaaaaccctcaaactgtgaaccaaacgggactccctccaggggaaaatagtagagagggtttccattcaagtagtcaaccttttggttcagcctcttttccaggtgatgtgttcagagaaaaggccggagcatcactgagcaatctgcctccctctctaaggcctccgcctgagggtggttatccacctctcccatttgttgagtggggataggtctgccacctcatttactactcttgtcagatatgctttagagtgggtggactgaagatgtagattgccctaaatataaatactatattgactatgaaacaaatagatgactacaagttcagttgagtgatttgcacttagaaacaggaaattaaaagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="40849" stop="37937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40549" g_stop="40436" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40435" i_stop="40362" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40361" g_stop="40297" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="179" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40296" i_stop="39558" i_length="739">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39557" g_stop="39473" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="264" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39472" i_stop="38714" i_length="759">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38713" g_stop="38651" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="327" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38650" i_stop="38510" i_length="141">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38509" g_stop="38237" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="600" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E247813" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40549" e_stop="40436"/>
          <exon e_start="40361" e_stop="40297"/>
          <exon e_start="39557" e_stop="39473"/>
          <exon e_start="38713" e_stop="38651"/>
          <exon e_start="38509" e_stop="38237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCAGTAAGTTTCTCCTTTTTCTTCTTCTTAGTAAATTAATTTCCAAGTGTTGATGAACGATTTTTCTGGGAGAACAGATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACGGTACTGCTCTTATCTTCGTATTTTAGTATGCAATATTTTGAGACACGGAGTCAGAAGTTGTATTACATTTTTGGGTTGTCCATTTTATTGCAACTGATGGAAGAAGAAACAAAAGTGATAGATGAGTCAGATTTTCGCATTTCATCAATCAATATTAGACTGGTTCGAGTTGGTTATATGAATCATCTGTATCTTTTATTCAGAAGATTCATCATCTTTTGAGTTCAATTGATGCATTTCATAATTACCATTCAAAAAAAAAAAAGAGAGACTGTTGCAATCTAAGATACTTTGAAGTAGAATTTGAGGTTTCTAGGCCTTTTACTTTAATTTATAAGGTTTTGTAAGGCCTATAGGCTATAATCTTCTCAGAATACGGCTAAGTTGTATGTCTCCAACTTGATGAGCATGGTATGAATTGTCGTAGGTGAATTTCATAATCTGCTAGCTTAGCTTAATTTGTTATTTTAGCAGATTCACATCATTATGGTTGAAAAAGTTTAGTAATATGCTGATAAGTGATAAACATTACTGATAGTACTTCTATTCACTAAGTTATGAACATAAGTGAATGTTGCTTTACTTCATCCACCTGAAGTATTGCCCAAGACAAACAAAATGTTGAAGGAGCAACAACAGTGGATTGGGGATGGTGAAGTCTAAACTCTAAATAAATACTATGTGTTTTACACCCTTTATTGGATAATGTTGTTGATCATATCTTTTACATGTATCAAAGGGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAGGTATCTTTCTCGCATGTTTTGAGTATATTCATATTCAAGATTTTACTGTCAACCAACTAATGTCTTAAATCTTGAACTATATTAACCACCACGATAACTATTTAAACTTACTGCCCTCAAAAAGTATTTTTGTTTCTTATATTAACAACCATGATAATTTCTGTTGTTTGCTGCTTCATGAAATGGTTGTCCTTGTCACTCATCCAAAAGATCTCCTGGTTTTTGTCAGATGTTATTAAAATCTCAAAGGTATATCTTAGGAAAGTAATCTAACTTTTGGGAAGTCAGAGCTTTAAGAAGAACTGGGGAATCAATCTTTTGAATTTCTTGGATTTGGCAATGTGCAGAATTAACTTGTGCAAGCGGTATCCTGTGCTATTTTTTTAAAAAAACATTGTTAATAGTATTGTGTACATTTTGCCAACGAACTTATCTTGTTATGCTACAAGTTCTTCATTCAAGATCTCGAAATTTATGTACCAACTCTTTTGAAGTTCTTTGTCCTGTAGTTTTAAGTTTTCATTCCTAGTAGTTATTCTAAAAGATTTGAGTGACCTGATTAGTTTTTTTAAGTTGTACAGTATTAATTCTTGAAATGGATATACACTTGAATTGGGAGTATACTTGATTGTCAATCATATCCTATGAATTTGAATAGCTGTGGAAGAACACAGTGAATGCAAACTATGAATTTGAATAGCTGTGGAGGAACACAGTGCATGCAAACTTTTGATTTCCTTTTGTTTATCCAATTCTCAGGGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAGGCAAGCATTGCTTTTGCATGTATTTTCTTCCTATTTTCACTTAAAATGTCAGGTGTTGTGTTTTTCCAATTCCCCAGTTAATCTGCTGATGCTCTTGGTAGTTTTTCTTCTAAATCTAGTTGTGATGTGTGGTTGTAGCAGGTGATGTGTTCAGAGAAAAGGCCGGAGCATCACTGAGCAATCTGCCTCCCTCTCTAAGGCCTCCGCCTGAGGGTGGTTATCCACCTCTCCCATTTGTTGAGTGGGGATAGGTCTGCCACCTCATTTACTACTCTTGTCAGATATGCTTTAGAGTGGGTGGACTGAAGATGTAGATTGCCCTAAATATAAATACTATATTGACTATGAAACAAATAGATGACTACAAGTTCAGTTGAGTGATTTGCACTTAGAAACAGGAAATTAAAAGTTATG</genome_strand>
        <mrna_strand>ACTACTGCGATTACTGCGATAAGGAATTCGAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCA..........................................................................ATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAG.............................................................................................................................................GTGATGTGTTCAGAGAAAAGGCCGGAGCATCACTGAGCAATCTGCCTCCCTCTCTAAGGCCTCCGCCTGAGGGTGGTTATCCACCTCTCCCATTTGTTGAGTGGGGATAGGTCTGCCACCTCATTTACTACTCTTGTCAGATATGCTTTAGAGTGGGTGGACTGAAGATGTAGATTGCCCTAAATATAAATACTATATTGACTATGAAACAAATAGATGACTACAAGTTCAGTTGAGTGATTTGCACTTAGAAACAGGAAATTAAAAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354748" ref_strand="+" ref_description="SGN-E354748 [cTOS-19-A7]">
      <seq>tgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaacaatttgagtgaacgttattattatgggattgcaaattaatgatagggtgactgttgatatggctcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42219" stop="41028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41919" g_stop="41822" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41735" g_stop="41322" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="512" r_length="414" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E354748" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41919" e_stop="41822"/>
          <exon e_start="41735" e_stop="41322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAAGACTCTTG</genome_strand>
        <mrna_strand>TGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232504" ref_strand="+" ref_description="SGN-E232504 [cLEL-5-D5](-)">
      <seq>atgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaacaatttgagtgaacgttattattatgggattgcaaattaatgatagggtgactgttgatatggctcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42036" stop="41028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41824" g_stop="41822" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41735" g_stop="41330" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="409" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="425"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E232504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41824" e_stop="41822"/>
          <exon e_start="41735" e_stop="41330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAA</genome_strand>
        <mrna_strand>ATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232284" ref_strand="+" ref_description="SGN-E232284 [cLEL-5-D5](-)">
      <seq>gtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaacaatttgagtgaacgttattattatgggattgcaaattaatgatagggtgactgttgatatggctcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="41974" stop="41028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41674" g_stop="41330" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="361"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E232284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41674" e_stop="41330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAA</genome_strand>
        <mrna_strand>GTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204958" ref_strand="-" ref_description="SGN-E204958 [cLEC-16-C6]">
      <seq>tgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatctnaccatgtctctgttgtccctttgtataattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacttgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaacaatttgagtgaacgttattattatgggattgcaaattaatgatagggtgactgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42186" stop="41042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41886" g_stop="41822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41735" g_stop="41342" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="459" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E204958" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204958" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41886" e_stop="41822"/>
          <exon e_start="41735" e_stop="41342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGA</genome_strand>
        <mrna_strand>TGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTNACCATGTCTCTGTTGTCCCTTTGTATAATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACTTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355162" ref_strand="+" ref_description="SGN-E355162 [cTOS-18-G10]">
      <seq>tgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttggaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaacaatttgagtgaacgttattattatgggattgcaaaattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42574" stop="41056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42274" g_stop="42240" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="138" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41735" g_stop="41356" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="518" r_length="380" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E355162" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42274" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGAT</genome_strand>
        <mrna_strand>TGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGGAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAAATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306469" ref_strand="+" ref_description="SGN-E306469 [cLEX-13-K21]">
      <seq>aagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaacaatttgagtgaacgttattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42579" stop="41076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42279" g_stop="42240" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="143" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41735" g_stop="41366" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="513" r_length="370" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E306469" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42279" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCA</genome_strand>
        <mrna_strand>AAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711297" ref_strand="+" ref_description="SGN-E711297 [FB01CD12]">
      <seq>ctatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42622" stop="41097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="187" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41735" g_stop="41388" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="535" r_length="348" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E711297" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGA</genome_strand>
        <mrna_strand>CTATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288306" ref_strand="+" ref_description="SGN-E288306 [cLES-16-P21]">
      <seq>aaattttctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgagctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatgaacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttacagagcacgccagaaaacagggcccttgctttggggtatgagtttctgccttgtgatagaaataatttaagtgtaccctttgaagctgcgattcttctctgtatcaatttgtgccttctttcccttatcttaccatgtctctgttgtccctttggattattattattatatcatgccttgtaaaagcagatgtacggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttacgatatatcctatgcttgtaacattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42750" stop="41113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42450" g_stop="42415" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="120" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="223" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41735" g_stop="41413" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="546" r_length="323" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E288306" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42450" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGT</genome_strand>
        <mrna_strand>AAATTTTCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGAGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGAACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTACAGAGCACGCCAGAAAACAGGGCCCTTGCTTTGGGGTATGAGTTTCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGCGATTCTTCTCTGTATCAATTTGTGCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGGATTATTATTATTATATCATGCCTTGTAAAAGCAGATGTACGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTACGATATATCCTATGCTTGTAACATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303646" ref_strand="+" ref_description="SGN-E303646 [cLEY-6-E19](-)">
      <seq>ctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttacgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42562" stop="41135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42262" g_stop="42240" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="126" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41735" g_stop="41438" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="424" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="442"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E303646" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42262" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGAT</genome_strand>
        <mrna_strand>CTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394886" ref_strand="+" ref_description="SGN-E394886 [TUS-43-C19](-)">
      <seq>gtgatcccaatacaagaatgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgagcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatgtaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccttttgtattattattattatattttgtttggtaaaagcagatgtagggaattgatctttaacaaataccctgatgttcaacctgtgttcctttttaccctgttcagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42187" stop="41135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41887" g_stop="41822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41735" g_stop="41438" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="365" r_length="299" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="375"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E394886" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41887" e_stop="41822"/>
          <exon e_start="41735" e_stop="41438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCC-GATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGAT</genome_strand>
        <mrna_strand>GTGATCCCAATACAAGAATGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGAGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATGTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCTTTTGTATTATTATTATTATATTTTGTTTGGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCTGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303592" ref_strand="+" ref_description="SGN-E303592 [cLEY-6-E19]">
      <seq>tcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42561" stop="41139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42261" g_stop="42240" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="125" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41735" g_stop="41439" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="422" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E303592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42261" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGA</genome_strand>
        <mrna_strand>TCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259389" ref_strand="+" ref_description="SGN-E259389 [cLEG-43-B22]">
      <seq>caactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42766" stop="41140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42466" g_stop="42415" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="136" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="239" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41735" g_stop="41440" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="535" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E259389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42466" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCG</genome_strand>
        <mrna_strand>CAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370758" ref_strand="+" ref_description="SGN-E370758 [TUS-28-B12](-)">
      <seq>acactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44113" stop="41150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43813" g_stop="43752" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="113" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="209" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="396" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41735" g_stop="41450" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="682" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="695"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E370758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43813" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTA</genome_strand>
        <mrna_strand>ACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733184" ref_strand="+" ref_description="SGN-E733184 [LB04AG09]">
      <seq>cgttctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44078" stop="41162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43779" g_stop="43752" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="79" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="175" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="259" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="362" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41735" g_stop="41463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="635" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="647"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E733184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43779" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCT</genome_strand>
        <mrna_strand>CGTTCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366462" ref_strand="-" ref_description="SGN-E366462 [cLPT-13-C21]">
      <seq>taacttgcgctgtgctgctttggatgccttggttcacccattttttggcgagcttggtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcaaagatattactgaagttggttccagagcacgccagaaaccagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattatcattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgaaaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="42558" stop="41162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42258" g_stop="42240" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="122" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41735" g_stop="41463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="392" r_length="270" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="415"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E366462" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366462" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42258" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCT</genome_strand>
        <mrna_strand>TAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGGCGAGCTTGGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAAAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAACCAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTG---TATTATCATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210722" ref_strand="+" ref_description="SGN-E210722 [cLEC-68-N8]">
      <seq>tcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44379" stop="41258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="64" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="205" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="256" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="352" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="436" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="539" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41735" g_stop="41558" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="717" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E210722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCAT</genome_strand>
        <mrna_strand>GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238008" ref_strand="+" ref_description="SGN-E238008 [cLED-18-P9]">
      <seq>tgtgtcctagctgagctactttttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgcgatagaaataatttaagtgtaccctttgaagctgtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44081" stop="41300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43781" g_stop="43752" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="81" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="177" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="261" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="364" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41735" g_stop="41600" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="500" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E238008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43781" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTC</genome_strand>
        <mrna_strand>TGTGTCCTAGCTGAGCTACTTTTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGCGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213389" ref_strand="+" ref_description="SGN-E213389 [cLEC-71-E8]">
      <seq>cagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactngagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaatatttaagtgtaccctttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44379" stop="41307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="69" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="210" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="261" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="357" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="544" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41735" g_stop="41607" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="672" r_length="128" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E213389" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCT</genome_strand>
        <mrna_strand>GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTNGAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAAT-ATTTAAGTGTACCCTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308392" ref_strand="+" ref_description="SGN-E308392 [cLEY-25-E3]">
      <seq>tgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagngcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44124" stop="41316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43824" g_stop="43752" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="124" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="220" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="304" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="407" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41735" g_stop="41616" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="527" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E308392" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43824" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCC</genome_strand>
        <mrna_strand>TGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGNGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702494" ref_strand="+" ref_description="SGN-E702494 [FA18DE07]">
      <seq>agacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccctcccttgggttatgagttcctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45956" stop="41342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45656" g_stop="45463" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="269" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="326" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="467" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="518" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="614" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="698" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="801" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41735" g_stop="41642" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="895" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E702494" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45656" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTT</genome_strand>
        <mrna_strand>AGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCCTCCCTTGGGTTATGAGTTCCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311041" ref_strand="+" ref_description="SGN-E311041 [cLEZ-17-L7]">
      <seq>cttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggatttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactcttccaacttgcgctgtgctgctgtggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgctgagatataactgaagttggttccagagcacgccagaaaacagtgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="43969" stop="41369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43763" g_stop="43752" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="159" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="243" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="346" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41735" g_stop="41669" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="413" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E311041" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43763" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCC</genome_strand>
        <mrna_strand>CTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTTCCAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................GTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCTGAGATATAACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707364" ref_strand="+" ref_description="SGN-E707364 [FA32DB10]">
      <seq>cgtttctcaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaaaaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45922" stop="41371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45623" g_stop="45463" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="235" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="292" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="433" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="484" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="580" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="664" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="767" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41735" g_stop="41671" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="832" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E707364" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45623" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGC</genome_strand>
        <mrna_strand>CGTTTCTCAA-CACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAAAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211312" ref_strand="+" ref_description="SGN-E211312 [cLEC-70-J11]">
      <seq>cgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctccccttgttaaacttcaggctcatgagttgaagaatgtgcatgcagagatattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45794" stop="41404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45494" g_stop="45463" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="107" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="164" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="305" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="356" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="452" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="536" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="639" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41735" g_stop="41704" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="671" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E211312" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45494" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCT-CCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTG</genome_strand>
        <mrna_strand>CGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCCTTGTTAAACTTC-AGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264581" ref_strand="+" ref_description="SGN-E264581 [cLEG-67-H8]">
      <seq>catatcagattttcagggcattgtcttacatacaccgcactattggagtgttccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45408" stop="41541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="83" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="140" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="281" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="332" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="428" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="512" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41924" g_stop="41841" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="596" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E264581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTG</genome_strand>
        <mrna_strand>ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTTCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332711" ref_strand="+" ref_description="SGN-E332711 [cTOD-18-M13]">
      <seq>tgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatccaatacacgcttgcctaatggacgctttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45883" stop="41549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45583" g_stop="45463" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="196" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="253" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="394" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="445" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="541" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="625" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41924" g_stop="41849" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="700" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E332711" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45583" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTC</genome_strand>
        <mrna_strand>TGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGAT-CCAATACACGCTTGCCTAATGGACGCTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274033" ref_strand="+" ref_description="SGN-E274033 [cLEN-8-F5]">
      <seq>taaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgttgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44190" stop="41553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43890" g_stop="43752" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="190" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="286" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="370" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41924" g_stop="41853" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="442" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E274033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43890" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTT</genome_strand>
        <mrna_strand>TAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGTTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272477" ref_strand="+" ref_description="SGN-E272477 [cLEM-19-F14]">
      <seq>cgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45378" stop="41556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45078" g_stop="45031" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="105" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="246" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="297" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="393" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="477" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41924" g_stop="41856" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="546" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E272477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45078" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGC</genome_strand>
        <mrna_strand>CGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200303" ref_strand="+" ref_description="SGN-E200303 [cLEC-12-N4]">
      <seq>atcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="44379" stop="41558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="65" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="206" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="257" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="353" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="437" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41924" g_stop="41858" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="504" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E200303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGAC</genome_strand>
        <mrna_strand>GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321548" ref_strand="+" ref_description="SGN-E321548 [cTOB-25-E5]">
      <seq>acaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattanatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45897" stop="41583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45597" g_stop="45463" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="210" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="267" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="408" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="459" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="555" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="639" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41924" g_stop="41883" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="681" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E321548" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45597" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGAT</genome_strand>
        <mrna_strand>ACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTANATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706829" ref_strand="+" ref_description="SGN-E706829 [FA31AC01]">
      <seq>cacggttttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccccactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaccgttttacgcactccctacaagggaacaaattaaatgtatgaatcccaactataatgagttccaatttcctcacattaaagctcatccatggcaccagatatttcataagcgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45951" stop="42005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45652" g_stop="45463" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="263" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="320" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="461" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="512" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="609" r_length="97" r_score="0.927"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42323" g_stop="42305" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="628" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E706829" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45652" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACT-CCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGC</genome_strand>
        <mrna_strand>CACG-GTTTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCC-CCACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACGCACTCCCTACAAGGGAACAAATTAAATGTATGAATCCCAACTATAATGAGTTCCAATTTCCTCACATTAAAGCTCATCCATGGCACCAG...........................................................................................ATATTTCATAAGCGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204266" ref_strand="+" ref_description="SGN-E204266 [cLEC-13-F8]">
      <seq>acctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45850" stop="42006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45550" g_stop="45463" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="163" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="220" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="361" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="412" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="508" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42323" g_stop="42306" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="526" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E204266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45550" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATG</genome_strand>
        <mrna_strand>ACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309659" ref_strand="+" ref_description="SGN-E309659 [cLEY-26-L22]">
      <seq>aacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45914" stop="42119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45614" g_stop="45463" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="227" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="284" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="425" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="476" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42510" g_stop="42419" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="568" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E309659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45614" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCA</genome_strand>
        <mrna_strand>AACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697675" ref_strand="+" ref_description="SGN-E697675 [FA03DB04]">
      <seq>cgatactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcttatttggtgcatcagagtacactactgctataaatgtttggtcctgctggctgtgtcctagctgagctacttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46221" stop="43457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46095" g_stop="46092" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46091" i_stop="45920" i_length="172">
            <donor d_prob="0.686" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="64" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="337" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="412" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="469" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43892" g_stop="43757" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="606" r_length="137" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E697675" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46095" e_stop="46092"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGT-CTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTG</genome_strand>
        <mrna_strand>CGAT............................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCTTATTTGGTGCATCAGAGTACACTACTGCTATAAATGTTTGGTCCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249509" ref_strand="+" ref_description="SGN-E249509 [cLEF-56-F11]">
      <seq>gaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45781" stop="43468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45481" g_stop="45463" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="94" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="151" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43768" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="276" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E249509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45481" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGA</genome_strand>
        <mrna_strand>GAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698791" ref_strand="+" ref_description="SGN-E698791 [FA07CD10]">
      <seq>ccttcttgaccaccctaatgttgtgtctcccctacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45946" stop="43481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45646" g_stop="45463" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="259" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="316" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43781" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="428" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E698791" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45646" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCT</genome_strand>
        <mrna_strand>CCTTCTTGACCACCCTAATGTTGTGTCTCCCCTACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370759" ref_strand="+" ref_description="SGN-E370759 [TUS-28-B12]">
      <seq>agaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttttaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctattgatgtttggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46501" stop="43487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46338" g_stop="46321" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="111" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="171" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="444" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="519" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="576" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43892" g_stop="43787" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="682" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E370759" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46338" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTG</genome_strand>
        <mrna_strand>AGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTTTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATTGATGTTTGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361327" ref_strand="+" ref_description="SGN-E361327 [cLPP-15-N7]">
      <seq>ctacaataagctgaatcaaaggatgcccttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggtttaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45820" stop="43499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45520" g_stop="45463" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="133" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="190" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43799" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="284" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E361327" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45520" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAG</genome_strand>
        <mrna_strand>CTACAATAAGCTGAATCAAAGGATGCCCTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTTAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702598" ref_strand="+" ref_description="SGN-E702598 [FA19AF12]">
      <seq>ggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatattttctacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47968" stop="43501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47668" g_stop="47579" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="252" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="345" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="405" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="678" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="753" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="810" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43892" g_stop="43801" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="902" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E702598" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47668" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTAT</genome_strand>
        <mrna_strand>GGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTTCTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213022" ref_strand="+" ref_description="SGN-E213022 [cLEC-72-O22]">
      <seq>atggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacctactgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46734" stop="43501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46434" g_stop="46321" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="207" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="267" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="540" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="615" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="672" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43892" g_stop="43801" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="763" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E213022" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46434" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTAT</genome_strand>
        <mrna_strand>ATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTAC-CTACTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212944" ref_strand="+" ref_description="SGN-E212944 [cLEC-73-P18]">
      <seq>actgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctggtctaagtattatcgagcacctgagctcatatttggtgcaacagagtacactactgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="45880" stop="43502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45580" g_stop="45463" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="193" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="250" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43892" g_stop="43802" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="341" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E212944" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45580" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTA</genome_strand>
        <mrna_strand>ACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGGTCTAAGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710130" ref_strand="+" ref_description="SGN-E710130 [FA54BD01]">
      <seq>atcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47959" stop="43734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47659" g_stop="47579" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="243" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="336" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="396" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="669" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="744" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44078" g_stop="44034" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="789" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E710130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47659" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGT</genome_strand>
        <mrna_strand>ATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293201" ref_strand="+" ref_description="SGN-E293201 [cLET-12-A12]">
      <seq>gacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46644" stop="43734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46344" g_stop="46321" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="117" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="177" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="450" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="525" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44078" g_stop="44034" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="570" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E293201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46344" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGT</genome_strand>
        <mrna_strand>GACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299540" ref_strand="+" ref_description="SGN-E299540 [cLEW-20-A20]">
      <seq>atgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46468" stop="43735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46168" g_stop="46104" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="125" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="398" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="473" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44078" g_stop="44035" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="517" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E299540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46168" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAG</genome_strand>
        <mrna_strand>ATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317517" ref_strand="+" ref_description="SGN-E317517 [cTOB-17-O11]">
      <seq>aaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46498" stop="43745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46323" g_stop="46321" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="96" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="156" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="429" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="504" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44078" g_stop="44045" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="538" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E317517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46323" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCG</genome_strand>
        <mrna_strand>AAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316029" ref_strand="+" ref_description="SGN-E316029 [cTOA-23-E24]">
      <seq>ttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcanaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48006" stop="44729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47706" g_stop="47579" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="383" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45883" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="420" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45882" i_stop="45586" i_length="297">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45585" g_stop="45463" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="543" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="618" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E316029" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47706" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45883"/>
          <exon e_start="45585" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG</genome_strand>
        <mrna_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAG.........................................................................................................................................................................................................................................................................................................GATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCANAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213956" ref_strand="+" ref_description="SGN-E213956 [cLEC-80-A18]">
      <seq>tatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctnttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcaaaatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47960" stop="44731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47660" g_stop="47579" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="244" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="337" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="398" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="671" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="746" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E213956" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47660" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCT-TTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG</genome_strand>
        <mrna_strand>TATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTNTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAAAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321705" ref_strand="+" ref_description="SGN-E321705 [cTOB-25-I11]">
      <seq>tcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47958" stop="44744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47658" g_stop="47579" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="242" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="335" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="668" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45044" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="730" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E321705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47658" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACC</genome_strand>
        <mrna_strand>TCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275886" ref_strand="+" ref_description="SGN-E275886 [cLEN-12-G5]">
      <seq>tggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46739" stop="44765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46439" g_stop="46321" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="212" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="272" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="545" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45105" g_stop="45065" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="586" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E275886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46439" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGT</genome_strand>
        <mrna_strand>TGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704974" ref_strand="+" ref_description="SGN-E704974 [FA25DC01]">
      <seq>aggctctctcatcaatatcaggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaacccgttcccccgtgttatcaaacactacaataagctgaattcaaaggatgccgttgatacttgtgaagctttatacatattagattttcagggcattgtcttacatacaccgcactattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48026" stop="44766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47729" g_stop="47579" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="312" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="465" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="741" r_length="276" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45066" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="781" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E704974" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47729" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAA-CCGTT-CACCGTGTTATCAAACACTACAATAAGCTGAA-TCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAG</genome_strand>
        <mrna_strand>AGGCTCTCTC-ATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCCGTTCCCCCGTGTTATCAAACACTACAATAAGCTGAATTCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATTAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211575" ref_strand="+" ref_description="SGN-E211575 [cLEC-67-M5]">
      <seq>ttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtggagctttatacatatcagattttcagggcattgtcttacatacaccgcactattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48003" stop="44767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47703" g_stop="47579" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="287" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="440" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="713" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45067" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="752" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E211575" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47703" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGA</genome_strand>
        <mrna_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGGAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332622" ref_strand="+" ref_description="SGN-E332622 [cTOD-18-J17]">
      <seq>tttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48000" stop="44767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47700" g_stop="47579" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="284" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="377" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="437" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="710" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45067" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="749" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E332622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47700" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGA</genome_strand>
        <mrna_strand>TTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315758" ref_strand="+" ref_description="SGN-E315758 [cTOA-26-M18]">
      <seq>tccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47953" stop="44768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47653" g_stop="47579" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="237" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="330" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="390" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="663" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45068" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="701" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E315758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47653" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGG</genome_strand>
        <mrna_strand>TCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723525" ref_strand="+" ref_description="SGN-E723525 [FC20DB03]">
      <seq>cgattggcggccaatcggccgaattgaatcaatatcaggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48021" stop="44772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47719" g_stop="47579" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="167" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="329" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="422" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="482" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="755" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45072" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="789" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E723525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47719" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTA</genome_strand>
        <mrna_strand>AATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206675" ref_strand="+" ref_description="SGN-E206675 [cLEC-31-N18]">
      <seq>ggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46497" stop="44780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46197" g_stop="46104" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="154" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="427" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45105" g_stop="45080" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="453" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E206675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46197" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACA</genome_strand>
        <mrna_strand>GGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318152" ref_strand="+" ref_description="SGN-E318152 [cTOA-29-G23]">
      <seq>tctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47996" stop="45165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47696" g_stop="47579" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="280" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="373" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="433" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45465" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="704" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E318152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47696" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATC</genome_strand>
        <mrna_strand>TCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206544" ref_strand="+" ref_description="SGN-E206544 [cLEC-23-L4]">
      <seq>gcctgaggagatgaatgacattagaatcagggatgataaggaaatggaggcagcaattgttgacggtgatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgcctttttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46660" stop="45167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46360" g_stop="46321" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="133" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="193" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45467" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="462" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E206544" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46360" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATA</genome_strand>
        <mrna_strand>GCCTGAGGAGATGAATGACATTAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAGGCAGCAATTGTTGACGGTGATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTTTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347839" ref_strand="+" ref_description="SGN-E347839 [cTOF-26-L22]">
      <seq>ttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48003" stop="45177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47703" g_stop="47579" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="287" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="440" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45477" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="699" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E347839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47703" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGC</genome_strand>
        <mrna_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329008" ref_strand="+" ref_description="SGN-E329008 [cTOC-24-O11]">
      <seq>ttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtaccctgaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48003" stop="45179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47703" g_stop="47579" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="287" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="440" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45479" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="697" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E329008" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47703" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAA</genome_strand>
        <mrna_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCCTGAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200833" ref_strand="+" ref_description="SGN-E200833 [cLEC-5-C7]">
      <seq>gagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46639" stop="45186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46339" g_stop="46321" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="112" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="172" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45486" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="422" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E200833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46339" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATAC</genome_strand>
        <mrna_strand>GAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326503" ref_strand="+" ref_description="SGN-E326503 [cTOC-17-K7]">
      <seq>tctttctctctttgtatctctttttctctctcatggtgatggtatcattctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatccttttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactancataagctgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48002" stop="45204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47702" g_stop="47579" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="287" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="441" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45504" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="673" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E326503" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47702" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCA-TCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCC-TTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATC</genome_strand>
        <mrna_strand>TCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATTCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTANCATAAGCTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213535" ref_strand="+" ref_description="SGN-E213535 [cLEC-71-E12]">
      <seq>tcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47958" stop="45243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47658" g_stop="47579" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="242" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="335" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45543" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="588" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E213535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47658" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAA</genome_strand>
        <mrna_strand>TCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305528" ref_strand="+" ref_description="SGN-E305528 [cLEX-14-A9]">
      <seq>ttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48006" stop="45246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47706" g_stop="47579" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="383" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="443" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45546" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="633" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E305528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47706" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTG</genome_strand>
        <mrna_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302315" ref_strand="+" ref_description="SGN-E302315 [cLEW-19-J2]">
      <seq>ttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47999" stop="45246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47699" g_stop="47579" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="283" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="376" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="436" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45546" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="626" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E302315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47699" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTG</genome_strand>
        <mrna_strand>TTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313906" ref_strand="+" ref_description="SGN-E313906 [cTOA-17-L18]">
      <seq>tcatctgcgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcatggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47958" stop="45280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47658" g_stop="47579" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="242" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="335" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45580" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="551" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E313906" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47658" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAA</genome_strand>
        <mrna_strand>TCATCTGCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCATGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723619" ref_strand="+" ref_description="SGN-E723619 [FC21AC07]">
      <seq>catctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcaccaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcaaactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttctagataaaagatataagaaccgagaattgcaaacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47957" stop="45287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47657" g_stop="47579" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="241" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="334" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="394" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45587" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="543" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E723619" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47657" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAA</genome_strand>
        <mrna_strand>CATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCACCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAA........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCTAGATAAAAGATATAAGAACCGAGAATTGCAAACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366709" ref_strand="+" ref_description="SGN-E366709 [cLPT-17-E4]">
      <seq>tttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctataaaaaaggttcttcaagataaaagatataagaaccgagagttgcagacaatgcgccttcttgaccaccctaatgtgtgtctctcaaacactgcttcttttccacaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47982" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47682" g_stop="47579" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="266" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="359" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="419" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45590" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="564" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E366709" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47682" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGA</genome_strand>
        <mrna_strand>TTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATAAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAGTTGCAGACAATGCGCCTTCTTGACCACCCTAATG-TGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723931" ref_strand="+" ref_description="SGN-E723931 [FC22BH11]">
      <seq>cgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgaaagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactatgggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttaaagactggtgaaactgttgctattaaaaaggttcttcaggataaaagatataaaaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47928" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47628" g_stop="47579" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="212" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="305" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="365" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45590" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="511" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E723931" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47628" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGA</genome_strand>
        <mrna_strand>CGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAAAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATGGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAAAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAGGATAAAAGATATAAAAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320062" ref_strand="+" ref_description="SGN-E320062 [cTOB-21-O7]">
      <seq>tttctctctctcaatcaatatcaggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcacgcaaaatgcttagagactggtgaaactgttgctattacaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48031" stop="45301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47731" g_stop="47579" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="315" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="408" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45601" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="603" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E320062" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47731" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTT</genome_strand>
        <mrna_strand>TTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAC............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTACAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272320" ref_strand="+" ref_description="SGN-E272320 [cLEM-19-H4]">
      <seq>aggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactattaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgctgacggtgatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48009" stop="45309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47709" g_stop="47579" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="293" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="386" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="446" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45609" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="573" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E272320" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47709" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACT</genome_strand>
        <mrna_strand>AGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTATTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGCTGACGGTGATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270827" ref_strand="+" ref_description="SGN-E270827 [cLEM-6-C20]">
      <seq>agaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46501" stop="45315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46338" g_stop="46321" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="111" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="171" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45615" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="292" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E270827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46338" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCA</genome_strand>
        <mrna_strand>AGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207809" ref_strand="+" ref_description="SGN-E207809 [cLEC-32-J19]">
      <seq>tctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatttaagaaccgagaattgcagacaatgcgccttcttgaccaccctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47994" stop="45327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47694" g_stop="47579" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="278" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="371" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="431" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45627" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="540" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E207809" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47694" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATG</genome_strand>
        <mrna_strand>TCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATTTAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321727" ref_strand="+" ref_description="SGN-E321727 [cTOB-25-C4]">
      <seq>tctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgcccttcttgaccaccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47996" stop="45328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47696" g_stop="47579" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="280" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="373" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="433" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45628" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="542" r_length="109" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E321727" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47696" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCG-CCTTCTTGACCACCCTAAT</genome_strand>
        <mrna_strand>TCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCCTTCTTGACCACCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272166" ref_strand="+" ref_description="SGN-E272166 [cLEN-4-K9]">
      <seq>tctctcaatcaatatcacgttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggttatgggactgagacaggccacataatagtgacaactatcggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaagaaggttcttcaagataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48025" stop="45378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47725" g_stop="47579" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="309" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="402" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45678" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="520" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E272166" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47725" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAA</genome_strand>
        <mrna_strand>TCTCTCAATCAATATCACGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTTATGGGACTGAGACAGGCCACATAATAGTGACAACTATCGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAGAAGGTTCTTCAAGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208794" ref_strand="+" ref_description="SGN-E208794 [cLEC-51-D20]">
      <seq>ttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48003" stop="45378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47703" g_stop="47579" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="287" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="440" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45678" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="498" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E208794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47703" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAA</genome_strand>
        <mrna_strand>TTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394887" ref_strand="+" ref_description="SGN-E394887 [TUS-43-C19]">
      <seq>tgagaatcatggatgataatgaaatggaagcagcaattgttgacggtaatgggactgatacaggccacataatagtgacaactattggtggtagaaatggccaaccaaagcatactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgttggtggcattatgtctagaaaccggtgaatctgttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46501" stop="45564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46340" g_stop="46321" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="113" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="173" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45735" g_stop="45702" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="207" r_length="34" r_score="0.794"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E394887" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46340" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTA</genome_strand>
        <mrna_strand>TGAGAATCATGGATGATAAT............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGATACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAACCAAAGCAT........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTGGTG............................................................................................................................GCATTATGTCTAGAAACCGGTGAATCTGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341496" ref_strand="+" ref_description="SGN-E341496 [cTOE-23-D22]">
      <seq>tctcaatcaatatcaggttcttctttctctctttgtatctctgtttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48023" stop="45403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47723" g_stop="47579" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="307" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="400" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="460" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45703" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="493" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E341496" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47723" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCT</genome_strand>
        <mrna_strand>TCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTGTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364946" ref_strand="+" ref_description="SGN-E364946 [cLPP-17-O7]">
      <seq>tcaatccaatatcaggttcttctttctctttgcatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtatttcaggcaaaatgcttagagactggtgaaactgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48021" stop="45404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47721" g_stop="47579" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="304" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="397" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="457" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45704" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="489" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E364946" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47721" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAT-CAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGC</genome_strand>
        <mrna_strand>TCAATCCAATATCAGGTTCTTC-TT-TCTCTTTGCATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTATTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306093" ref_strand="+" ref_description="SGN-E306093 [cLEY-13-H13]">
      <seq>aggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48009" stop="45404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47709" g_stop="47579" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="293" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="386" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="446" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45704" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="478" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E306093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47709" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGC</genome_strand>
        <mrna_strand>AGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208989" ref_strand="+" ref_description="SGN-E208989 [cLEC-38-K8]">
      <seq>tttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48000" stop="45408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47700" g_stop="47579" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="284" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="377" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="437" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45708" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="465" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E208989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47700" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTG</genome_strand>
        <mrna_strand>TTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359815" ref_strand="+" ref_description="SGN-E359815 [cLPP-9-K19]">
      <seq>tcaatatcaggttcttctttctctttgcatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtatttcaggcaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48017" stop="45553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47717" g_stop="47579" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="299" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="392" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="452" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45727" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="461" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E359815" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47717" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGC</genome_strand>
        <mrna_strand>TCAATATCAGGTTCTTC-TT-TCTCTTTGCATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTATTTCAG............................................................................................................................GCAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397175" ref_strand="+" ref_description="SGN-E397175 [TUS-45-K9]">
      <seq>tgacatgagaatcaccgatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="46501" stop="45564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46345" g_stop="46321" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="118" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45919" g_stop="45864" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="174" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E397175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46345" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTT</genome_strand>
        <mrna_strand>TGACATGAGAATCACCGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331727" ref_strand="+" ref_description="SGN-E331727 [cTOD-7-H8]">
      <seq>ttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48006" stop="45572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47706" g_stop="47579" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="383" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45872" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="431" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E331727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47706" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGG</genome_strand>
        <mrna_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212776" ref_strand="+" ref_description="SGN-E212776 [cLEC-73-N6]">
      <seq>ctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48001" stop="45572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47701" g_stop="47579" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="285" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="378" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45872" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="426" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E212776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47701" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGG</genome_strand>
        <mrna_strand>CTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303047" ref_strand="+" ref_description="SGN-E303047 [cLEW-26-B23]">
      <seq>ttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48006" stop="45580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47706" g_stop="47579" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="290" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="383" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45880" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="423" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E303047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47706" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGAT</genome_strand>
        <mrna_strand>TTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360532" ref_strand="+" ref_description="SGN-E360532 [cLPP-8-J7]">
      <seq>cgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47951" stop="45585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47651" g_stop="47579" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="235" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="328" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45885" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="363" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E360532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47651" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACA</genome_strand>
        <mrna_strand>CGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320793" ref_strand="+" ref_description="SGN-E320793 [cTOB-27-E4]">
      <seq>tcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47958" stop="45589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47658" g_stop="47579" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="242" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="335" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45889" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="366" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E320793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47658" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTG</genome_strand>
        <mrna_strand>TCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363462" ref_strand="+" ref_description="SGN-E363462 [cLPP-4-O22]">
      <seq>tttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47982" stop="45806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47682" g_stop="47579" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="266" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46106" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="357" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E363462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47682" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGC</genome_strand>
        <mrna_strand>TTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204915" ref_strand="+" ref_description="SGN-E204915 [cLEC-14-N22]">
      <seq>tcaatcaatatcaggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48021" stop="45819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47721" g_stop="47579" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="305" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46119" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="383" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E204915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47721" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAAT</genome_strand>
        <mrna_strand>TCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362377" ref_strand="+" ref_description="SGN-E362377 [cLPP-10-P13]">
      <seq>tctttctctctctcaatcaatatcaggttcttctttctctttgcatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgatgagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48033" stop="45844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47733" g_stop="47579" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="315" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46144" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="368" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E362377" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47733" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAAT</genome_strand>
        <mrna_strand>TCTTTCTCTCTCTCAATCAATATCAGGTTCTTC-TT-TCTCTTTGCATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGATGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204880" ref_strand="+" ref_description="SGN-E204880 [cLEC-14-D8]">
      <seq>ctcaatcaatatcaggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttacgtgggcttagcacctacatcgggtttgagagaatccactggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgatacaggccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48022" stop="45848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47722" g_stop="47579" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="306" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46148" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="355" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E204880" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47722" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACA</genome_strand>
        <mrna_strand>CTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTACGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCACTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGATACAGGCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712007" ref_strand="+" ref_description="SGN-E712007 [FB03CE06]">
      <seq>cgctgagattaagcagactctagctggctgtcttgctcgagcattgccgggattggttgctgaccttaggctgcctgtaccgatatcaactttagagcaaggaatggttctcctcttaaatacaatgtcttttgtggatccactccctgcattccgaatgaagcaatggcaacttattgtacttctgtttcttgatgctctttctgtatgtaggatacccacactgactccatatatgacggggcgaaggacttcgtttccaaaggtgcttgatggtgctcagataagcgcagcggaatatgagatcatgaaagatctgatcattccactaggtcgagtgcctcagttctcaatgcaaagtggaggctagtttgacatgaaatagctgttgtggaccctctcctataaaccttcatggtagaaagaggaactgcacagagctgttgtttaatacaatttacagcaagtcctctaatcctgataggagttgattttgccacctttccaccagcaacatatcttcgtcctgtcattatatcctcttgttgaaacattgtttagtttggcaaggtttgatatcatgtttactgctgtgatccctctatcttggagactagtgatatggaaactgtgattccacttctttagtgtgtgaagatttggtcaatcatttttacctacttgtgcagtcatgtaaaaatcctcagatgtgttctgagaggtgtgaatataactttaaaatagaactattatttttctgtgttttaatccaagaactgtttgtctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="58641" stop="53827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58343" g_stop="58238" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58237" i_stop="57407" i_length="831">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57406" g_stop="57248" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="265" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55217" g_stop="55056" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="427" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55055" i_stop="54494" i_length="562">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54493" g_stop="54124" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="796" r_length="369" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E712007" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58343" e_stop="58238"/>
          <exon e_start="57406" e_stop="57248"/>
          <exon e_start="55217" e_stop="55056"/>
          <exon e_start="54493" e_stop="54124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATGGTATGATTACATTTTAAGATATTACCTTCCCCTTGTCAAAGCTCTTTTAGGATAACAGTGGAAGTTGTCAAGTCAATGACTTCTGAATGCTGTCAGGAGACATTAAGTGGTTGCCTTTTTTTGTGCAGCTAGAATCAATTTTAATTTCTTTTGTTTTTATGTTGTATTTGGAAGCAATTTTAGTCTCATGGTTTTGTTTTGGTTTAGGATTTCATTTCCCAGTAGGAGATAACTTTAAATATGCTATTAAATGTTGCCAGTACTGTGCATTGCATGAAGTTGCAAAATACAAGAGGCTTGTAAAGGATTGTCTAAACTACCCGAAAGTCCAAATTTAGGGTTCTCTCTTTTCACTCAGCCTCAAACAATCGACATTTTGTCATGGGGGTTGGGGAGGAAATCAATACAAGTACACCACCTATAATTTTGATGGAATGATTCTGCCAAGTGCTGTATAGTTGGCTGGGGGAGGTGATGGGATGACATTTTGTTTTCTATGACTCTGGAAGTTGCTCACGGTTTTCTACCATATGTCATTTTTCATTGTTTTTACTTATTCTTAAGTTAAGAGAAGAAATGAGTTTGTATGATATATTATCCTCATTGGCTCCATTATACTTTTAAGTGAGGTTTGTGTGCATTTCCAAAATCTAGAGGAGGTTCTTTGATGTGCTTAGAACCATCCACTGAGACTTTTCCATGGGTGTGTTGGCTTGTGATGGTGTAGTTAGGTAGACGAGGGTGTTTTTGGTTTAAGGATATCATTGCATGTCATGACTAATCAGTAATAATCATCTGTGAGGATGACTCTTCTTTGTTTGACATGTGCAGGTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAGGTAGAATTTTGTGATCATAAACTTCTATGTTCTCATGCAATTTTCTTTCCTCTATCTCACTCTTTAACATTTGTTCTCAGGAATCCCTTCCATCCCCTCCCCAGGTCTAGTTAGTCCTTTTAAATCTTCACTAAGATTTGCCACCTTCCAGAATTATATTGGACATAGATGCCTATATTTTGATGGCAGCATTTTTCACTAACTCGAGCTTGAATATTTGGTAAATGCAATTTATTAGGGCACTAGACCTATATATGTGATAGACATTACTTTTTCAGTTCTTGCTTCATGTTACTTAGAAAGGATCAACTGTTTTTTAGATGTTGACTATATTGTTTCCAAAAAAAAGAATTGAAACATGTTCCTTAGAGTGTGATTGTGTCCTAACTGTTCTTTGGAGTTTTTGTTTGTCCCATCTTCTGGAAAACTACAGTTCCAAAACATATTCCAATCATTTCCCCTGTTGCTTCTTCTGGGAGGCGATCATCTTTGTTTTTAAGCCTCGGGGCTCGGTCTAGTGATAAGAGTACAACGCGAGATGTGTGAGTTTCAACCTTGTAGTTCGATATTTAAGTGGAGAAGATTATATGGGCAGGCTCAGTTTCCGCCAAGTTTCAGACCATGTGCTGTTGAACTTATTTTGATGAAGTCCTCTTTTTTTGATAAATTGTTTTTTCCTTGTTTTACTTATTACTCTCAAGTTTGCTAGGCAACAGGGAGACTCACCTTGACCACCTTCTTTCTTGTTCTTTGGTATGCAATTTACTCCTCCTCTTAAATGAAACCATTATGGGAGATGGGATGTACTATTGAAATTCCAAGAAGATGCAGGAGATTTGATGCAAAAATGTAGAGCTTGGGTAGGATGAACTTTTAAATTCCATTACATGTGTTTATAGTCAAATATAACCGATTACTTATACTGGAAGAAAATGAAATGGTTATGTATTTTTAGTGGAAGGCATATAATAACAGCAGTTTCAAAATGGCCACCTGTAGGTAGGGAAAAGAAGATCTAATTACATGGTACACATGCTGTTTTGTACCCTCCTGCTTGCCAGAAAACATTACCAAGACTACGCTAATAACAGTATAGCTGGCAAACAGAAGTGTATTCCTTCCTTCGGGTAGCGAACAAAGTTGTTTGATGAGTCCGCATTGAAGTTGTATTGTTGTCAACGGTAAAATAGAAAGTTGTGAAGTTGTCTTGTGGCTGGCTTTTACTGAGAAGTTCAGTGTGTTATAGTTGTTCTAGCTTAGCTGTTCTTGTTCATCAAGCTGAAAACTGACAGATTATTAGGGAGGTGCGGTAATAACCTCCAATGTTCCGCTTATAGTTGAACTTGGTTTTGCGGAATTTTCATGAGGTATATGGCAGCTCTCGAGGCTCGGTTGAATGCTATAAGCTTAACGAGCAAGCTGTCCAATTTTTTTAACTCCACTTGAATATCACTTTACCAACCTTTCACAGATTTGCTAACAAGCATGCATGCAGTACTAGTAATTATATGTGAGCTAACATAGTTCGAAATGTTTTTGTTGAAAATCAAGAGAACCTGATTTCATTTGCTACCCTTCCACAGAATAACTAGTATGCAGGATAATAGTTGTACTCGAGCATACATGGTTGACAAATGTCTTTATGTGAAAATCGAGTGAATTAACAGTATAATGTGTTTAGATTCATTGAAGTAAAGTAAGAGAAGATTAGTGAGTATTTCAAAATATTCCCTTTGATACTGCTGGATATATTTTTATATAGTAGTGGATGGAGTGTTTGCCTACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTAACCTAAAATTCATCTATAATGGGGTTTTTCTAGTACATTAATGCACTAACGTATCTTCTTTCCATTTTCCCCTAGTTTTCCTGCATAAGACATTAATAGTTTTTTGACTCAAAGAAGCCAGGTGGACTGAGATCTCCTTTTGTTGACTTTGGCTAAACAGGTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAGGTTGTGAAAGTAGACTTGAAAGTGTGCACATACCGCAAAATTATATATGTTTGTTGCAACTTCTCTTCATATCTGCTTATGTTATAGAATTTGCTATGTTGTCAAGACACTGATGATTGATGATAAGTGAAAAATGTAAAGTAAGTATTTACTCCATTTCCCTCTGGCTTTTTTAAAAAAATTATGACAGCTATCGTCTATGTGGAGTAAATTAGTTTTTTTAACCATGGCAGTTTACTTTTTAACTTGTGATTTGTAGTATCCTATGAAGTCTTTATATGCACAAGATTTATTACTCTAACTTAAGAAATTGATGTCTGAATTTGTATTGGAAAATTCTAAATGCTTAAGTAGTCATCATAGAATTAGGTCATTGGTTTAGGATATAGTAGCAAATATGTTTTGCTTTGATTGGAAGTGTGGAGGTTACTAGTTTTGTTGTCATTTCATTGTATTGTCGTGAAAATAATTGATCAGAATACAACCCCTCTGCTTATTGCATGACTAGTTCAATTATTAGCTGCAAAATTTACAAGCTTTAATGAGTTCTTCTGTGTAACAGGAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTTAAATCCAAGAACTGTTTGTCTCCAAATATTC</genome_strand>
        <mrna_strand>CGCTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGAGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTT-AATCCAAGAACTGTTTGTCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703609" ref_strand="+" ref_description="SGN-E703609 [FA21DH08]">
      <seq>ttcggaacaatgtttaattccctcttcacatggatatcatcatcgtccttggcatttatatatgggcatgatgaaagcaataacgaggagtatttgtctatcaatggaagagaatatcctcgcaaaattgtgttatctgatggccggtcaactgagattaagcagactctagctggctgtcttgctcgagcattgccgggattggttgctgaccttaggctgcctgtaccgatatcaactttagagcaaggaatggttctcctcttaaatacaatgtcttttgtggatccactccctgcattccgaatgaagcaatggcaacttattgtacttctgtttcttgatgctctttctgtatgtaggatacccacactgactccatatatgacggggcgaaggacttcgtttccaaaggtgcttgatggtgctcagataagcgcagcggaatatgagatcatgaaagatctgatcattccactaggtcgagtgcctcagttctcaatgcaaagtggaggctagtttgacatgaaatagctgttgtggaccctctcctataaaccttcatggtagaaagaggaactgcacagagctgttgtttaatacaatttacagcaagtcctctaatcctgataggagttgattttgccacctttccaccagcaacatatcttcgtcctgtcattatatcctcttgttgaaacattgtttagtttggcaaggtttgatatcatgtttactgctgtgatccctctatcttggagactagtgatatggaaactgtgattccacttctttagtgtgtgaagatttggtcaatcatttttacctacttgtgcagtcatgtaaaaatcctcagatgtgttctgtgaggggtgaatataactttaaattaaactattatttttctgggtttaaatccaagaactgtttgtctccaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="58792" stop="53827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58492" g_stop="58238" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58237" i_stop="57407" i_length="831">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57406" g_stop="57248" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="414" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55217" g_stop="55056" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="576" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55055" i_stop="54494" i_length="562">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54493" g_stop="54130" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="938" r_length="362" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="941" polyA_stop="951"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E703609" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58492" e_stop="58238"/>
          <exon e_start="57406" e_stop="57248"/>
          <exon e_start="55217" e_stop="55056"/>
          <exon e_start="54493" e_stop="54130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGAACAATGTTTAATTCCCTCTTCACATGGATATCATCATCGTCCTTGGCATTTATATATGGGCATGATGAAAGCAATAACGAGGAGTATTTGTCTATCAATGGAAGAGAATATCCTCGCAAAATTGTGTTATCTGATGGCCGGTCAACTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATGGTATGATTACATTTTAAGATATTACCTTCCCCTTGTCAAAGCTCTTTTAGGATAACAGTGGAAGTTGTCAAGTCAATGACTTCTGAATGCTGTCAGGAGACATTAAGTGGTTGCCTTTTTTTGTGCAGCTAGAATCAATTTTAATTTCTTTTGTTTTTATGTTGTATTTGGAAGCAATTTTAGTCTCATGGTTTTGTTTTGGTTTAGGATTTCATTTCCCAGTAGGAGATAACTTTAAATATGCTATTAAATGTTGCCAGTACTGTGCATTGCATGAAGTTGCAAAATACAAGAGGCTTGTAAAGGATTGTCTAAACTACCCGAAAGTCCAAATTTAGGGTTCTCTCTTTTCACTCAGCCTCAAACAATCGACATTTTGTCATGGGGGTTGGGGAGGAAATCAATACAAGTACACCACCTATAATTTTGATGGAATGATTCTGCCAAGTGCTGTATAGTTGGCTGGGGGAGGTGATGGGATGACATTTTGTTTTCTATGACTCTGGAAGTTGCTCACGGTTTTCTACCATATGTCATTTTTCATTGTTTTTACTTATTCTTAAGTTAAGAGAAGAAATGAGTTTGTATGATATATTATCCTCATTGGCTCCATTATACTTTTAAGTGAGGTTTGTGTGCATTTCCAAAATCTAGAGGAGGTTCTTTGATGTGCTTAGAACCATCCACTGAGACTTTTCCATGGGTGTGTTGGCTTGTGATGGTGTAGTTAGGTAGACGAGGGTGTTTTTGGTTTAAGGATATCATTGCATGTCATGACTAATCAGTAATAATCATCTGTGAGGATGACTCTTCTTTGTTTGACATGTGCAGGTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAGGTAGAATTTTGTGATCATAAACTTCTATGTTCTCATGCAATTTTCTTTCCTCTATCTCACTCTTTAACATTTGTTCTCAGGAATCCCTTCCATCCCCTCCCCAGGTCTAGTTAGTCCTTTTAAATCTTCACTAAGATTTGCCACCTTCCAGAATTATATTGGACATAGATGCCTATATTTTGATGGCAGCATTTTTCACTAACTCGAGCTTGAATATTTGGTAAATGCAATTTATTAGGGCACTAGACCTATATATGTGATAGACATTACTTTTTCAGTTCTTGCTTCATGTTACTTAGAAAGGATCAACTGTTTTTTAGATGTTGACTATATTGTTTCCAAAAAAAAGAATTGAAACATGTTCCTTAGAGTGTGATTGTGTCCTAACTGTTCTTTGGAGTTTTTGTTTGTCCCATCTTCTGGAAAACTACAGTTCCAAAACATATTCCAATCATTTCCCCTGTTGCTTCTTCTGGGAGGCGATCATCTTTGTTTTTAAGCCTCGGGGCTCGGTCTAGTGATAAGAGTACAACGCGAGATGTGTGAGTTTCAACCTTGTAGTTCGATATTTAAGTGGAGAAGATTATATGGGCAGGCTCAGTTTCCGCCAAGTTTCAGACCATGTGCTGTTGAACTTATTTTGATGAAGTCCTCTTTTTTTGATAAATTGTTTTTTCCTTGTTTTACTTATTACTCTCAAGTTTGCTAGGCAACAGGGAGACTCACCTTGACCACCTTCTTTCTTGTTCTTTGGTATGCAATTTACTCCTCCTCTTAAATGAAACCATTATGGGAGATGGGATGTACTATTGAAATTCCAAGAAGATGCAGGAGATTTGATGCAAAAATGTAGAGCTTGGGTAGGATGAACTTTTAAATTCCATTACATGTGTTTATAGTCAAATATAACCGATTACTTATACTGGAAGAAAATGAAATGGTTATGTATTTTTAGTGGAAGGCATATAATAACAGCAGTTTCAAAATGGCCACCTGTAGGTAGGGAAAAGAAGATCTAATTACATGGTACACATGCTGTTTTGTACCCTCCTGCTTGCCAGAAAACATTACCAAGACTACGCTAATAACAGTATAGCTGGCAAACAGAAGTGTATTCCTTCCTTCGGGTAGCGAACAAAGTTGTTTGATGAGTCCGCATTGAAGTTGTATTGTTGTCAACGGTAAAATAGAAAGTTGTGAAGTTGTCTTGTGGCTGGCTTTTACTGAGAAGTTCAGTGTGTTATAGTTGTTCTAGCTTAGCTGTTCTTGTTCATCAAGCTGAAAACTGACAGATTATTAGGGAGGTGCGGTAATAACCTCCAATGTTCCGCTTATAGTTGAACTTGGTTTTGCGGAATTTTCATGAGGTATATGGCAGCTCTCGAGGCTCGGTTGAATGCTATAAGCTTAACGAGCAAGCTGTCCAATTTTTTTAACTCCACTTGAATATCACTTTACCAACCTTTCACAGATTTGCTAACAAGCATGCATGCAGTACTAGTAATTATATGTGAGCTAACATAGTTCGAAATGTTTTTGTTGAAAATCAAGAGAACCTGATTTCATTTGCTACCCTTCCACAGAATAACTAGTATGCAGGATAATAGTTGTACTCGAGCATACATGGTTGACAAATGTCTTTATGTGAAAATCGAGTGAATTAACAGTATAATGTGTTTAGATTCATTGAAGTAAAGTAAGAGAAGATTAGTGAGTATTTCAAAATATTCCCTTTGATACTGCTGGATATATTTTTATATAGTAGTGGATGGAGTGTTTGCCTACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTAACCTAAAATTCATCTATAATGGGGTTTTTCTAGTACATTAATGCACTAACGTATCTTCTTTCCATTTTCCCCTAGTTTTCCTGCATAAGACATTAATAGTTTTTTGACTCAAAGAAGCCAGGTGGACTGAGATCTCCTTTTGTTGACTTTGGCTAAACAGGTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAGGTTGTGAAAGTAGACTTGAAAGTGTGCACATACCGCAAAATTATATATGTTTGTTGCAACTTCTCTTCATATCTGCTTATGTTATAGAATTTGCTATGTTGTCAAGACACTGATGATTGATGATAAGTGAAAAATGTAAAGTAAGTATTTACTCCATTTCCCTCTGGCTTTTTTAAAAAAATTATGACAGCTATCGTCTATGTGGAGTAAATTAGTTTTTTTAACCATGGCAGTTTACTTTTTAACTTGTGATTTGTAGTATCCTATGAAGTCTTTATATGCACAAGATTTATTACTCTAACTTAAGAAATTGATGTCTGAATTTGTATTGGAAAATTCTAAATGCTTAAGTAGTCATCATAGAATTAGGTCATTGGTTTAGGATATAGTAGCAAATATGTTTTGCTTTGATTGGAAGTGTGGAGGTTACTAGTTTTGTTGTCATTTCATTGTATTGTCGTGAAAATAATTGATCAGAATACAACCCCTCTGCTTATTGCATGACTAGTTCAATTATTAGCTGCAAAATTTACAAGCTTTAATGAGTTCTTCTGTGTAACAGGAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTTAAATCCAAGAACTGTTTGTCTCCAA</genome_strand>
        <mrna_strand>TTCGGAACAATGTTTAATTCCCTCTTCACATGGATATCATCATCGTCCTTGGCATTTATATATGGGCATGATGAAAGCAATAACGAGGAGTATTTGTCTATCAATGGAAGAGAATATCCTCGCAAAATTGTGTTATCTGATGGCCGGTCAACTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGGGTGAATATAACTTTAAATTA-AACTATTATTTTTCTG-GGTTTAAATCCAAGAACTGTTTGTCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704553" ref_strand="+" ref_description="SGN-E704553 [FA24CE01]">
      <seq>caacttattgtacttctgtttcttgatgctctttctgtatgtaggatacccacactgactccatatatgacggggcgaaggacttcgtttccaaaggtgcttgatggtgctcagataagcgcagcggaatatgagatcatgaaagatctgatcattccactaggtcgagtgcctcagttctcaatgcaaagtggaggctagtttgacatgaaatagctgttgtggaccctctcctataaaccttcatggtagaaagaggaactgcacagagctgttgtttaatacaatttacagcaagtcctctaatcctgataggagttgattttgccacctttccaccagcaacatatcttcgtcctgtcattatatcctcttgttgaaacattgtttagtttggcaaggtttgatatcatgtttactgctgtgatccctctatcttggagactagtgatatggaaactgtgattccacttctttagtgtgtgaagatttggtcaatcatttttacctacttgtgcagtcatgtaaaaatcctcagatgtgttctgtgaggtgtgaatataactttaaaatagaactattatttttctgtgttttaaatccaagaactgtttgtctccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="57643" stop="53827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57343" g_stop="57248" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55217" g_stop="55056" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="258" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55055" i_stop="54494" i_length="562">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54493" g_stop="54130" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="622" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="633"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E704553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57343" e_stop="57248"/>
          <exon e_start="55217" e_stop="55056"/>
          <exon e_start="54493" e_stop="54130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAGGTAGAATTTTGTGATCATAAACTTCTATGTTCTCATGCAATTTTCTTTCCTCTATCTCACTCTTTAACATTTGTTCTCAGGAATCCCTTCCATCCCCTCCCCAGGTCTAGTTAGTCCTTTTAAATCTTCACTAAGATTTGCCACCTTCCAGAATTATATTGGACATAGATGCCTATATTTTGATGGCAGCATTTTTCACTAACTCGAGCTTGAATATTTGGTAAATGCAATTTATTAGGGCACTAGACCTATATATGTGATAGACATTACTTTTTCAGTTCTTGCTTCATGTTACTTAGAAAGGATCAACTGTTTTTTAGATGTTGACTATATTGTTTCCAAAAAAAAGAATTGAAACATGTTCCTTAGAGTGTGATTGTGTCCTAACTGTTCTTTGGAGTTTTTGTTTGTCCCATCTTCTGGAAAACTACAGTTCCAAAACATATTCCAATCATTTCCCCTGTTGCTTCTTCTGGGAGGCGATCATCTTTGTTTTTAAGCCTCGGGGCTCGGTCTAGTGATAAGAGTACAACGCGAGATGTGTGAGTTTCAACCTTGTAGTTCGATATTTAAGTGGAGAAGATTATATGGGCAGGCTCAGTTTCCGCCAAGTTTCAGACCATGTGCTGTTGAACTTATTTTGATGAAGTCCTCTTTTTTTGATAAATTGTTTTTTCCTTGTTTTACTTATTACTCTCAAGTTTGCTAGGCAACAGGGAGACTCACCTTGACCACCTTCTTTCTTGTTCTTTGGTATGCAATTTACTCCTCCTCTTAAATGAAACCATTATGGGAGATGGGATGTACTATTGAAATTCCAAGAAGATGCAGGAGATTTGATGCAAAAATGTAGAGCTTGGGTAGGATGAACTTTTAAATTCCATTACATGTGTTTATAGTCAAATATAACCGATTACTTATACTGGAAGAAAATGAAATGGTTATGTATTTTTAGTGGAAGGCATATAATAACAGCAGTTTCAAAATGGCCACCTGTAGGTAGGGAAAAGAAGATCTAATTACATGGTACACATGCTGTTTTGTACCCTCCTGCTTGCCAGAAAACATTACCAAGACTACGCTAATAACAGTATAGCTGGCAAACAGAAGTGTATTCCTTCCTTCGGGTAGCGAACAAAGTTGTTTGATGAGTCCGCATTGAAGTTGTATTGTTGTCAACGGTAAAATAGAAAGTTGTGAAGTTGTCTTGTGGCTGGCTTTTACTGAGAAGTTCAGTGTGTTATAGTTGTTCTAGCTTAGCTGTTCTTGTTCATCAAGCTGAAAACTGACAGATTATTAGGGAGGTGCGGTAATAACCTCCAATGTTCCGCTTATAGTTGAACTTGGTTTTGCGGAATTTTCATGAGGTATATGGCAGCTCTCGAGGCTCGGTTGAATGCTATAAGCTTAACGAGCAAGCTGTCCAATTTTTTTAACTCCACTTGAATATCACTTTACCAACCTTTCACAGATTTGCTAACAAGCATGCATGCAGTACTAGTAATTATATGTGAGCTAACATAGTTCGAAATGTTTTTGTTGAAAATCAAGAGAACCTGATTTCATTTGCTACCCTTCCACAGAATAACTAGTATGCAGGATAATAGTTGTACTCGAGCATACATGGTTGACAAATGTCTTTATGTGAAAATCGAGTGAATTAACAGTATAATGTGTTTAGATTCATTGAAGTAAAGTAAGAGAAGATTAGTGAGTATTTCAAAATATTCCCTTTGATACTGCTGGATATATTTTTATATAGTAGTGGATGGAGTGTTTGCCTACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTAACCTAAAATTCATCTATAATGGGGTTTTTCTAGTACATTAATGCACTAACGTATCTTCTTTCCATTTTCCCCTAGTTTTCCTGCATAAGACATTAATAGTTTTTTGACTCAAAGAAGCCAGGTGGACTGAGATCTCCTTTTGTTGACTTTGGCTAAACAGGTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAGGTTGTGAAAGTAGACTTGAAAGTGTGCACATACCGCAAAATTATATATGTTTGTTGCAACTTCTCTTCATATCTGCTTATGTTATAGAATTTGCTATGTTGTCAAGACACTGATGATTGATGATAAGTGAAAAATGTAAAGTAAGTATTTACTCCATTTCCCTCTGGCTTTTTTAAAAAAATTATGACAGCTATCGTCTATGTGGAGTAAATTAGTTTTTTTAACCATGGCAGTTTACTTTTTAACTTGTGATTTGTAGTATCCTATGAAGTCTTTATATGCACAAGATTTATTACTCTAACTTAAGAAATTGATGTCTGAATTTGTATTGGAAAATTCTAAATGCTTAAGTAGTCATCATAGAATTAGGTCATTGGTTTAGGATATAGTAGCAAATATGTTTTGCTTTGATTGGAAGTGTGGAGGTTACTAGTTTTGTTGTCATTTCATTGTATTGTCGTGAAAATAATTGATCAGAATACAACCCCTCTGCTTATTGCATGACTAGTTCAATTATTAGCTGCAAAATTTACAAGCTTTAATGAGTTCTTCTGTGTAACAGGAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTTAAATCCAAGAACTGTTTGTCTCCAA</genome_strand>
        <mrna_strand>CAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTTAAATCCAAGAACTGTTTGTCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274519" ref_strand="-" ref_description="SGN-E274519 [cLEN-11-L7]">
      <seq>taaatacaatgtcttttgtggatccactccctgcattccgaatgaagcaatggcaacttattgtacttctgtttcttgatgctctttctgtatgtaggatacccacactgactccatatatgacggggcgaaggacttcgtttccaaaggtgcttgatggtgctcagataagcgcagcggaatatgagatcatgaaagatctgatcattccactaggtcgagtgcctcagttctcaatgcaaagtggaggctagtttgacatgaaatagctgttgtggaccctctcctataaaccttcatggtagaaagaggttgtgaaagtagacttgaaagtgtgcacataccgcaaaattatatatgtttgttgcaacttctcttcatatctgcttatgttatagaatttgctatgttgtcaagacactgatgattgatgataagtgaaaaatgtaaagtaagtatttactccatttccctctggcttttttaaaaaaattatgacagctatcgtctatgtggagtaaattagtttttttaaccaaaaaaaaaaaaaaaaaactctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="57696" stop="54529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57396" g_stop="57248" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55217" g_stop="54830" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="537" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="556"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E274519" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274519" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57396" e_stop="57248"/>
          <exon e_start="55217" e_stop="54830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAGGTAGAATTTTGTGATCATAAACTTCTATGTTCTCATGCAATTTTCTTTCCTCTATCTCACTCTTTAACATTTGTTCTCAGGAATCCCTTCCATCCCCTCCCCAGGTCTAGTTAGTCCTTTTAAATCTTCACTAAGATTTGCCACCTTCCAGAATTATATTGGACATAGATGCCTATATTTTGATGGCAGCATTTTTCACTAACTCGAGCTTGAATATTTGGTAAATGCAATTTATTAGGGCACTAGACCTATATATGTGATAGACATTACTTTTTCAGTTCTTGCTTCATGTTACTTAGAAAGGATCAACTGTTTTTTAGATGTTGACTATATTGTTTCCAAAAAAAAGAATTGAAACATGTTCCTTAGAGTGTGATTGTGTCCTAACTGTTCTTTGGAGTTTTTGTTTGTCCCATCTTCTGGAAAACTACAGTTCCAAAACATATTCCAATCATTTCCCCTGTTGCTTCTTCTGGGAGGCGATCATCTTTGTTTTTAAGCCTCGGGGCTCGGTCTAGTGATAAGAGTACAACGCGAGATGTGTGAGTTTCAACCTTGTAGTTCGATATTTAAGTGGAGAAGATTATATGGGCAGGCTCAGTTTCCGCCAAGTTTCAGACCATGTGCTGTTGAACTTATTTTGATGAAGTCCTCTTTTTTTGATAAATTGTTTTTTCCTTGTTTTACTTATTACTCTCAAGTTTGCTAGGCAACAGGGAGACTCACCTTGACCACCTTCTTTCTTGTTCTTTGGTATGCAATTTACTCCTCCTCTTAAATGAAACCATTATGGGAGATGGGATGTACTATTGAAATTCCAAGAAGATGCAGGAGATTTGATGCAAAAATGTAGAGCTTGGGTAGGATGAACTTTTAAATTCCATTACATGTGTTTATAGTCAAATATAACCGATTACTTATACTGGAAGAAAATGAAATGGTTATGTATTTTTAGTGGAAGGCATATAATAACAGCAGTTTCAAAATGGCCACCTGTAGGTAGGGAAAAGAAGATCTAATTACATGGTACACATGCTGTTTTGTACCCTCCTGCTTGCCAGAAAACATTACCAAGACTACGCTAATAACAGTATAGCTGGCAAACAGAAGTGTATTCCTTCCTTCGGGTAGCGAACAAAGTTGTTTGATGAGTCCGCATTGAAGTTGTATTGTTGTCAACGGTAAAATAGAAAGTTGTGAAGTTGTCTTGTGGCTGGCTTTTACTGAGAAGTTCAGTGTGTTATAGTTGTTCTAGCTTAGCTGTTCTTGTTCATCAAGCTGAAAACTGACAGATTATTAGGGAGGTGCGGTAATAACCTCCAATGTTCCGCTTATAGTTGAACTTGGTTTTGCGGAATTTTCATGAGGTATATGGCAGCTCTCGAGGCTCGGTTGAATGCTATAAGCTTAACGAGCAAGCTGTCCAATTTTTTTAACTCCACTTGAATATCACTTTACCAACCTTTCACAGATTTGCTAACAAGCATGCATGCAGTACTAGTAATTATATGTGAGCTAACATAGTTCGAAATGTTTTTGTTGAAAATCAAGAGAACCTGATTTCATTTGCTACCCTTCCACAGAATAACTAGTATGCAGGATAATAGTTGTACTCGAGCATACATGGTTGACAAATGTCTTTATGTGAAAATCGAGTGAATTAACAGTATAATGTGTTTAGATTCATTGAAGTAAAGTAAGAGAAGATTAGTGAGTATTTCAAAATATTCCCTTTGATACTGCTGGATATATTTTTATATAGTAGTGGATGGAGTGTTTGCCTACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTAACCTAAAATTCATCTATAATGGGGTTTTTCTAGTACATTAATGCACTAACGTATCTTCTTTCCATTTTCCCCTAGTTTTCCTGCATAAGACATTAATAGTTTTTTGACTCAAAGAAGCCAGGTGGACTGAGATCTCCTTTTGTTGACTTTGGCTAAACAGGTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAGGTTGTGAAAGTAGACTTGAAAGTGTGCACATACCGCAAAATTATATATGTTTGTTGCAACTTCTCTTCATATCTGCTTATGTTATAGAATTTGCTATGTTGTCAAGACACTGATGATTGATGATAAGTGAAAAATGTAAAGTAAGTATTTACTCCATTTCCCTCTGGCTTTTTTAAAAAAATTATGACAGCTATCGTCTATGTGGAGTAAATTAGTTTTTTTAACC</genome_strand>
        <mrna_strand>TAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAGGTTGTGAAAGTAGACTTGAAAGTGTGCACATACCGCAAAATTATATATGTTTGTTGCAACTTCTCTTCATATCTGCTTATGTTATAGAATTTGCTATGTTGTCAAGACACTGATGATTGATGATAAGTGAAAAATGTAAAGTAAGTATTTACTCCATTTCCCTCTGGCTTTTTTAAAAAAATTATGACAGCTATCGTCTATGTGGAGTAAATTAGTTTTTTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303018" ref_strand="+" ref_description="SGN-E303018 [cLEW-26-G20]">
      <seq>aagttgatgccttgcagttgcgttctggagaagaaacagaaaaatcggataagaacactagatttttgaaggtggacaaatttaattctggagaagtgtcttctggtccttcccaacatgatgtcaagaacaaaagtgtcctaattatgtctgatgacggaaggaaatatgcatcacatggtgaacatgataagctcaaatcttctttaaaatcttcaaattccaaaaaaatgtctcggtcagtcacttgggctgatgaaagtatcgatggtggcattggcaagaaaacagagagctcatccaaaatatcagaatatgagagtcaagcttatgggggatcagcctctactgatatggaagagaatgatgattcatatcggtttgaatctgcagaagcctgtgcagcagcactaagccaagcagcagaggctgttgcctcaggttctgatgttcctgatgctggtatgacattttcattgatcctccttattaggagatttgcaagtcatactctctttgcatctaattgcttttgagttctgttgcatgtgatatttagtgtccaaagccgggattgtaatattgccaccttcacaagaagtggatgaagcaatacttcaggagactgatgagatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="59710" stop="58471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59410" g_stop="58771" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E303018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59410" e_stop="58771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTTAGTGTCCAAAGCCGGGATTGTAATATTGCCACCTTCACAAGAAGTGGATGAAGCAATACTTCAGGAGACTGATGAGATGCTTG</genome_strand>
        <mrna_strand>AAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTTAGTGTCCAAAGCCGGGATTGTAATATTGCCACCTTCACAAGAAGTGGATGAAGCAATACTTCAGGAGACTGATGAGATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542902" ref_strand="+" ref_description="SGN-E542902 [TUS-64-H2]">
      <seq>caagttgatgccttgcagttgcgttctggagaagaaacagaaaaatcggataagaacactagatttttgaaggtggacaaatttaattctggagaagtgtcttctggtccttcccaacatgatgtcaagaacaaaagtgtcctaattatgtctgatgacggaaggaaatatgcatcacatggtgaacatgataagctcaaatcttctttaaaatcttcaaattccaaaaaaatgtctcggtcagtcacttgggctgatgaaagtatcgatggtggcattggcaagaaaacagagagctcatccaaaatatcagaatatgagagtcaagcttatgggggatcagcctctactgatatggaagagaatgatgattcatatcggtttgaatctgcagaagcctgtgcagcagcactaagccaagcagcagaggctgttgcctcaggttctgatgttcctgatgctggtatgacattttcattgatcctccttattaggagatttgcaagtcatactctctttgcatctaattgcttttgagttctgttgcatgtgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="59711" stop="58554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59411" g_stop="58854" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E542902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59411" e_stop="58854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTT</genome_strand>
        <mrna_strand>CAAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328173" ref_strand="+" ref_description="SGN-E328173 [cTOC-21-M15]">
      <seq>gccatttgtagagcttacagagacctgattccttcgttgttcttgggggcgctgtagagagattcaattaagttgatgatttagggtggaattaccagtaccttttttcttttaagtacttcggacgagttctctaatggcaaaaggagaagccgtcgctgttaaagatgctgtccacaaattacaactctgtcttcttgaaggcatcaaagatgaaagccaactcattgctgctggatctctgttgtctcggagtgattatcaggatgtagtgaccgaacgatcaattgccaacatgtgtggttatcctctttgcagcaattctctgccttctgaaaggtctcggaaaggacattacagaatatcattgaaggagcataaagtttatgatcttcatgaaacatacatgtactgttcaacaaattgtgtagtcaatagcggagcatttgctggtagcttgcaggatgagagaagctctacactgaatccagcaaagcttaatcaagtcctgaatctatttaaggggttgcatttgcattccttagatgatgtgaaggaaaatggagatcgaggatcttctaagttgaagatccaggaaaaagtggatttaaagggtggtgaagtttcattagaagagtggatgggtccatctaatgcaattgaaggctatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="63227" stop="59545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62927" g_stop="62812" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62811" i_stop="60404" i_length="2408">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60403" g_stop="59845" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="675" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E328173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62927" e_stop="62812"/>
          <exon e_start="60403" e_stop="59845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTTGTAGAGCTTACAGAGACCTGATTCCTTCGTTGTTCTTGGGGGCGCTGTAGAGAGATTCAATTAAGTTGATGATTTAGGGTGGAATTACCAGTACCTTTTTTCTTTTAAGGTACGAGAATCACTTGTAACTAATGATTGTTAACCTTTTTAAAATCTTGATTGGTAAGAACCCTGTTCAAGTTTCTTTTCGCTGTAATTGAGAATCGTGATATAGAAGTTGGGTTGCGGAGTGTGAAGGCAATGGAACTTAACATAACTATATATGACCTTACTTTTTAGTACTAGGCAGTTATGCTGATTTCTGCACGTAACGTGTTTGATAATATGCCGCTTGCAGATTCTTGGTTCAGTCATTTGTTATTTGTTTTTGTGGAGATTCTTGGCTTTTCCCTTTATCATCACATTCTTAATTTTGTTGCAATGATAATGAACAAAGCAAACGTAAGTATTTCTCCTAGCAAAACTTAATATCAGCCCATGATTGATCGCCTTAAAATCTTGATTCAAAGGAACCCTGTCCAATTTTCTTTTTTCCTTTCCTTTTCACTGTAATTTAGAATCTTGATAAAGAAGTAAGGTTTTTCCTTTTCTCTGTTGTTCAGATTCTTGATAAAAGAAGTAAGGTTTTTCCTTTCCTTTTCAGAATCTTGATAAAGAAGTTAGGTTTTTCCTTTCCTTTTCACTGTTATTCAGAATCTTGATAAGGAAGTAGGTTTTTCTTTTCCTTATCACTGTTATTCATAATCTTGATAAAGAAGTAAGATTGTGGAGTAAAGGCAATGGAACTTCACATAACTATATATGGACTTAACTTTTTAGTATTATTAGGTAGTCATGCTGATTTCTGCAGGTTACATGCTTGATGATATGCCAGTTGCAGATTCTTGGCTTAGTCATTTGTTATTTGTTTTTTTTTTGTGGAAATCAGAGCCATTACGTCATTATTCTTAGTTTTTCCCTTTGTCATCACATTCTTGATTTTGTTGCAATGATAATGAACAAAGCAAACATAAGTGTTTTACTCCTACCAGAACTTAACATCAACGAATGATTAAAGAAGAAGGGTTGCGGAGTGAAGGCAATGGAACTTCACATAAAAATACATGGACTTCACTTTTTAGTATTAGGTAGTCATGCACGTAACATGTTTGATAATATGCCGCTTGCAAATTCTTCGTTCATTCATTTGTTATTTGTGTTTGTATTTATTGGTATTCCTATTTTGAGTACTCTTCACTTTTCCCTTTATATTCACATTCTTGAATTTGTTGCAATGATGATGAACAAACATCGGTGTTCTACTCCCAGCAAAACTTAATATCGACGAATGATTGATAGCCTTAAAATTTTGATTGAAAAGAACCCAGACCAAGTTTCCTTTTTCCTTTTCTTTTCGCTGTTATTCAGAACCTTGATAAAGACGTAGGGTTGCGGAGTGATCTAGCCTCCACTATATACTCACATAGACAAAAAAAACCTTTCATGCTGCTTAGCGCGCCGCACACAAGCCAGAATAGATTGCAGGTCCAACCTCTTCGTTCTAGTTTCATTGTCGTCACTTCTTGAATTGATTGGATTAAATTGCTAATTACTTTTATGACCTGTCATTCCTTTTTTCCTTCCAGAGTTGGGGTTTTTAGTCAATGAAGTTGGTTTTTTCGTCCAATAATAGTATGGTACAGTGACTTTTGAAACTTGAAATGGGTGATGATTGAATATAACTCAGCTTTATGGGTGGGGCTAAATATAATTTTAAAATATGATTATAAGGATATATTTGTTGAAAAAGCATAATGGAGAACAAAAATAATTTATTATCGACATTAGAAGGACAAATAACCCTTTTTCTGATAGCTGATGAATTGGCCCTAAGGCTAGAGTGGGGTTTAAGTAATTTTATTAATCATTGTTAAGATGAATTTTCCTTTAGTCAACTCATTCTTCCCCTTCAATTGCACACGTGAAGTTCCACGATTAGGGCAATGGAACTTCACATAACTATATATGGACTATACTTTTTAGTATTAGGTAGTTATGCTGATGTCTGCAGGTAGCATGTTTGATCGTATGCCGCTTGGAATTGCTTGGTTCCGTCATTTGTTATTTGTGATCGCATTAATTTGTACTCCCTGTTTTGTGAAATATTAACCTTTACATCATTACACTTCACTTCTCCCTTTACCATCACGTCTTGATTTTGTTGCGATGATCATGAACAGAGCAAACATAAGTGTTCTAGTCCTAGCAAAACTTAATATCAAGAGACTTTGTGTAAGGCACTGTAATCGGAATGTGCTTGCGTATAACATTCTTACTGGATCTGCCACATAAATTGGTACGAGGGAGTAACATTTATTGGTGTAAGATCTCATATGGTATATTAGATGTTCTTTTGTATGCTTATGATATCCATGGTGAATAACATGCAGAATGAGTGAGATTTATTTTTGATATCTAATACCTATCTCATATCATGTACTTTATTAACTTATTGTAATAAATTCTATTTGTCATCAGTACTTCGGACGAGTTCTCTAATGGCAAAAGGAGAAGCCGTCGCTGTTAAAGATGCTGTCCACAAATTACAACTCTGTCTTCTTGAAGGCATCAAAGATGAAAGCCAACTCATTGCTGCTGGATCTCTGTTGTCTCGGAGTGATTATCAGGATGTAGTGACCGAACGATCAATTGCCAACATGTGTGGTTATCCTCTTTGCAGCAATTCTCTGCCTTCTGAAAGGTCTCGGAAAGGACATTACAGAATATCATTGAAGGAGCATAAAGTTTATGATCTTCATGAAACATACATGTACTGTTCAACAAATTGTGTAGTCAATAGCGGAGCATTTGCTGGTAGCTTGCAGGATGAGAGAAGCTCTACACTGAATCCAGCAAAGCTTAATCAAGTCCTGAATCTATTTAAGGGGTTGCATTTGCATTCCTTAGATGATGTGAAGGAAAATGGAGATCGAGGATCTTCTAAGTTGAAGATCCAGGAAAAAGTGGATTTAAAGGGTGGTGAAGTTTCATTAGAAGAGTGGATGGGTCCATCTAATGCAATTGAAGGCTATGTTCC</genome_strand>
        <mrna_strand>GCCATTTGTAGAGCTTACAGAGACCTGATTCCTTCGTTGTTCTTGGGGGCGCTGTAGAGAGATTCAATTAAGTTGATGATTTAGGGTGGAATTACCAGTACCTTTTTTCTTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCGGACGAGTTCTCTAATGGCAAAAGGAGAAGCCGTCGCTGTTAAAGATGCTGTCCACAAATTACAACTCTGTCTTCTTGAAGGCATCAAAGATGAAAGCCAACTCATTGCTGCTGGATCTCTGTTGTCTCGGAGTGATTATCAGGATGTAGTGACCGAACGATCAATTGCCAACATGTGTGGTTATCCTCTTTGCAGCAATTCTCTGCCTTCTGAAAGGTCTCGGAAAGGACATTACAGAATATCATTGAAGGAGCATAAAGTTTATGATCTTCATGAAACATACATGTACTGTTCAACAAATTGTGTAGTCAATAGCGGAGCATTTGCTGGTAGCTTGCAGGATGAGAGAAGCTCTACACTGAATCCAGCAAAGCTTAATCAAGTCCTGAATCTATTTAAGGGGTTGCATTTGCATTCCTTAGATGATGTGAAGGAAAATGGAGATCGAGGATCTTCTAAGTTGAAGATCCAGGAAAAAGTGGATTTAAAGGGTGGTGAAGTTTCATTAGAAGAGTGGATGGGTCCATCTAATGCAATTGAAGGCTATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334319" ref_strand="+" ref_description="SGN-E334319 [cTOD-21-K20]">
      <seq>tgcaatggatgcaatttttcgagcaatgcaagatcagtcagagtcaaatgtgcccgttgttggacacatcgcgagagaagctcctgaagggaatcttttagagacatggactgagaagctaaagaatacacaatttcagctcagtgatgtaactaatggattctctgacctgtttgctgtcaaggataccgctgaaattatgaatgtgaagaaagctggctatctgacttcatcagtgatgaagcactttgtagtcccaaagctagaaagggttatcgatgaggagaagaaggtgtcacattcttcactaatggatgatactgaaaaggtcatactggaacctgcaaagattaaggtgaagttgaaggcagagaatgtcgacatctgttaccctccaatttttcagagtggaggagagtttgatctgagaccaagtgcatcaagcaatgatcagaatctttactatgattcaacaagtgtgattatctgtgcaattggttctcgatataatagttactgctcaaatgttgctcggacctttctaattgatgccaatccaatgcaaagcaaggcgtatgaagtccttttgaaggctcatgaggctgcaattggagctctgagaccaggaaataaggctggagatgtctaccaagcagcccctcatgtggttgaaaaggaggcacctgaattggnntgcaatttgacgagatctgcaggaactggaattgggcttgagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="66812" stop="68150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67112" g_stop="67850" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E334319" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67112" e_stop="67850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGGATGCAATTTTTCGAGCAATGCAAGATCAGTCAGAGTCAAATGTGCCCGTTGTTGGACACATCGCGAGAGAAGCTCCTGAAGGGAATCTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCTCAATGTGGTTGAAAAGGAGGCACCTGAATTGGTTGCAAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTC</genome_strand>
        <mrna_strand>TGCAATGGATGCAATTTTTCGAGCAATGCAAGATCAGTCAGAGTCAAATGTGCCCGTTGTTGGACACATCGCGAGAGAAGCTCCTGAAGGGAATCTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCCTCATGTGGTTGAAAAGGAGGCACCTGAATTGGNNTGCAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739997" ref_strand="+" ref_description="SGN-E739997 [LC19CF10]">
      <seq>cttttagagacatggactgagaagctaaagaatacacaatttcagctcagtgatgtaactaatggattctctgacctgtttgctgtcaaggataccgctgaaattatgaatgtgaagaaagctggctatctgacttcatcagtgatgaagcactttgtagtcccaaagctagaaagggttatcgatgaggagaagaaggtgtcacattcttcactaatggatgatactgaaaaggtcatactggaacctgcaaagattaaggtgaagttgaaggcagagaatgtcgacatctgttaccctccaatttttcagagtggaggagagtttgatctgagaccaagtgcatcaagcaatgatcagaatctttactatgattcaacaagtgtgattatctgtgcaattggttctcgatataatagttactgctcaaatgttgctcggacctttctaattgatgccaatccaatgcaaagcaaggcgtatgaagtccttttgaaggctcatgaggctgcaattggagctctgagaccaggaaataaggctggagatgtctaccaagcagccctcaatgtggttgaaaaggaggcacctgaattggttgcaaatttgacgagatctgcaggaactggaattgggcttgagttccgtgaatcagggttaaacctcaacggcaagaatgatagaatgctgaaatctgggcatggtttttaatgtgtctcttgggtttcagaatttgcaaacagagtctaaaaacccccaaaactgaaaaaatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="66906" stop="68280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67206" g_stop="67980" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E739997" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67206" e_stop="67980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCTCAATGTGGTTGAAAAGGAGGCACCTGAATTGGTTGCAAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTCCGTGAATCAGGGTTAAACCTCAACGGCAAGAATGATAGAATGCTGAAATCTG-GCATGGTTTTTAATGTGTCTCTTGGGTTTCAGAATTTGCAAACAGAGTCTAAAAA-CCCCAAAACTGAAAAAATTTGTG</genome_strand>
        <mrna_strand>CTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCTCAATGTGGTTGAAAAGGAGGCACCTGAATTGGTTGCAAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTCCGTGAATCAGGGTTAAACCTCAACGGCAAGAATGATAGAATGCTGAAATCTGGGCATGGTTTTTAATGTGTCTCTTGGGTTTCAGAATTTGCAAACAGAGTCTAAAAACCCCCAAAACTGAAAAAATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269323" ref_strand="+" ref_description="SGN-E269323 [cLEM-18-N5]">
      <seq>tttgcaaacagagtctaaaaaccccaaaactgaaaaaatttgtgttttggttgctgatacagttgttattggtcaaaatgctccagaagtggtgacttctatgagttctaaagccgtaaaagatgtggcttactcattcaacgaggatgaagaagaagaggaggagcagccgaaggtcaaagctaagcctgttgctgccaatggactctcatccaaggctacacttagatcagttaaccacgagacatcaagggaggaactaagacggcaacaccaggcagaattggcccgccaaaagaacgaataaactgcacgaaggctcacaggaggaagttctgggggtgcagatagccgtggttctgcgaaaagccactggagatttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="67637" stop="68621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67937" g_stop="68321" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E269323" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67937" e_stop="68321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAACAGAGTCTAAAAACCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCTGATACAGTTGTTATTGGTCAAAATGCTCCAGAAGTGGTGACTTCTATGAGTTCTAAAGCCGTAAAAGATGTGGCTTACTCATTCAACGAGGATGAAGAAGAAGAGGAGGAGCAGCCGAAGGTCAAAGCTAAGCCTGTTGCTGCCAATGGACTCTCATCCAAGGCTACACTTAGATCAGTTAACCACGAGACATCAAGGGAGGAACTAAGACGGCAACACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCG-AAAGCCACTGGAGATTTGCTT</genome_strand>
        <mrna_strand>TTTGCAAACAGAGTCTAAAAACCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCTGATACAGTTGTTATTGGTCAAAATGCTCCAGAAGTGGTGACTTCTATGAGTTCTAAAGCCGTAAAAGATGTGGCTTACTCATTCAACGAGGATGAAGAAGAAGAGGAGGAGCAGCCGAAGGTCAAAGCTAAGCCTGTTGCTGCCAATGGACTCTCATCCAAGGCTACACTTAGATCAGTTAACCACGAGACATCAAGGGAGGAACTAAGACGGCAACACCAGGCAGAATTGGCCCGCCAAAAGAACGAATAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAAGCCACTGGAGATTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740931" ref_strand="+" ref_description="SGN-E740931 [LC23CB09]">
      <seq>cgattaggcagaattggcccgccaaaagaacgaagaaactgcacgaaggctcacaggaggaagttctgggggtgcagatagccgtggttctgcgaaagccactggagatttgcttgcatataagaacattaatgatctgccacctccaagagaattgatgattcaggttgaccagcggagtgaggctattcttttacctattcatggtaccatgattccattccatattgccaccgtgaaaagtgtatctagtcaacaagatactaaccgtacctgctatatccgaataatgttcaatgttcctggcactccattcactcctcatgacacaaatactctaaagttccagggatcaatatatgttaaagaagtttcatttcgttccaaggacccaaggcacatcactgaagtggttcaacaaataagaaccctccgcaggcaggttgtctctagagaatcagagagagctgagagagcaactttagtaacacaagagaaacttcaagttgctggagccaaatttaaaccaatcaagttgtcagatctgtggattcgtccagtatttggtggtcgcgggagaaagcttcctggtactctagaggctcacacaaatggattccggtatggaacttcaaggccagatgagagagtggatgttatgtatggtaacatcaaacacgcattcttccagccagcagaaaaggagatgattacagtcctccactttcacctgcacaatcacataatggtggggaacaagaaaaccaaggacgtgcagttctatgttgaagtgatggacgttgtgcagacaattgggggtggaaaaagatctgcttatgatcctgatgagattgaggaggaacagcgtgaaagggataggaaaacnagattaacatgggatttcaaacatttgtgaataaggtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="67912" stop="69434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68207" g_stop="69134" g_length="928"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="927" r_length="927" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E740931" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68207" e_stop="69134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAAT</genome_strand>
        <mrna_strand>CGATTAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGG-AAAACNAGATTAACATGGGATTTCAAACATTTGTGAATAAGGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735928" ref_strand="+" ref_description="SGN-E735928 [LC03CH04]">
      <seq>cgatcaggcagaattggcccgccaaaagaacgaagaaactgcacgaaggctcacaggaggaagttctgggggtgcagatagccgtggttctgcgaaagccactggagatttgcttgcatataagaacattaatgatctgccacctccaagagaattgatgattcaggttgaccagcggagtgaggctattcttttacctattcatggtaccatgattccattccatattgccaccgtgaaaagtgtatctagtcaacaagatactaaccgtacctgctatatccgaataatgttcaatgttcctggcactccattcactcctcatgacacaaatactctaaagttccagggatcaatatatgttaaagaagtttcatttcgttccaaggacccaaggcacatcactgaagtggttcaacaaataagaaccctccgcaggcaggttgtctctagagaatcagagagagctgagagagcaactttagtaacacaagagaaacttcaagttgctggagccaaatttaaaccaatcaagttgtcagatctgtggattcgtccagtatttggtggtcgcgggagaaagcttcctggtactctagaggctcacacaaatggattccggtatggaacttcaaggccagatgagagagtggatgttatgtatggtaacatcaaacacgcattcttccagccagcagaaaaggagatgattacagtcctccactttcacctgcacaatcacataatggtggggaacaagaaaaccaaggacgtgcagttctatgttgaagtgatggacgttgtgcagacaattgggggtggaaaaagatctgcttatgatcctgatgagattgaggaggaacagcgtgaaaagggataggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="67909" stop="69391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68207" g_stop="69091" g_length="885"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="886" r_length="886" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E735928" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68207" e_stop="69091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTG-AAAGGGATAGGAAAAA</genome_strand>
        <mrna_strand>CGATCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAAGGGATAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736641" ref_strand="+" ref_description="SGN-E736641 [LC06CD01]">
      <seq>cacctggcagaattggcccgccaaaagaacgaagaaactgcacgaaggctcacaggaggaagttctgggggtgcagatagccgtggttctgcgaaagccactggagatttgcttgcatataagaacattaatgatctgccacctccaagagaattgatgattcaggttgaccagcggagtgaggctattcttttacctattcatggtaccatgattccattccatattgccaccgtgaaaagtgtatctagtcaacaagatactaaccgtacctgctatatccgaataatgttcaatgttcctggcactccattcactcctcatgacacaaatactctaaagttccagggatcaatatatgttaaagaagtttcatttcgttccaaggacccaaggcacatcactgaagtggttcaacaaataagaaccctccgcaggcaggttgtctctagagaatcagagagagctgagagagcaactttagtaacacaagagaaacttcaagttgctggagccaaatttaaaccaatcaagttgtcagatctgtggattcgtccagtatttggtggtcgcgggagaaagcttcctggtactctagaggctcacacaaatggattccggtatggaacttcaaggccagatgagagagtggatgttatgtatggtaacatcaaacacgcattcttccagccagcagaaaaggagatgattacagtcctccactttcacctgcacaatcacataatggtggggaacaagaaaaccaaggacgtgcagttctatgttgaagtgatggacgttgtgcagacaattgggggtggaaaaagatctgcttatgatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="67908" stop="69352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68208" g_stop="69052" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="845" r_length="845" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E736641" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68208" e_stop="69052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGA</genome_strand>
        <mrna_strand>CACCTGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689379" ref_strand="+" ref_description="SGN-E689379 [t3_tus_84_G23]">
      <seq>gctggagccaaatttaaaccaatcaagttgtcagatctcttgattcgtccagtatttggtggtcgcgggagaaagcttcctggtactctagaggctcacacaaatggattccggtatggaacttcaaggccagatgagagagtggatgttatgtatggtaacatcaaacacgcattcttccagccagcagaaaaggagatgattacagtcctccactttcacctgcacaatcacataatggtggggaacaagaaaaccaaggacgtgcagttctatgttgaagtgatggacgttgtgcagacaattgggggtggaaaaagatctgcttatgatcctgatgagattgaggaggaacagcgtgaaagggataggaaaaacaagattaacatggaatttcaaacatttgtgaataaggtaaatgacctctggacccagcctcagtttaaagggcttgatttggagtttgatcagccgttgagagaacttggattccacggggtaccccacaagtcaacagcttttatagtcccaacatctagctgccttgttgagctcgtagagacaccatttgttgtgatcactctctgtgagattgagatagtcaacttggagagggttggtctcgggcagaaaaattttgacctgacaattatattcaaggacttcaaaagagatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="68415" stop="69695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68715" g_stop="69395" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E689379" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68715" e_stop="69395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATG</genome_strand>
        <mrna_strand>GCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTCTTGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAAAATTTTGACCTGACAATTATATTCAAGGACTTCAAAAGAGATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333289" ref_strand="+" ref_description="SGN-E333289 [cTOD-20-A12]">
      <seq>ctggagccaaatttaaaccaatcaagttgtcagatctgtggattcgtccagtatttggtggtcgcgggagaaagcttcctggtactctagaggctcacacaaatggattccggtatggaacttcaaggccagatgagagagtggatgttatgtatggtaacatcaaacacgcattcttccagccagcagaaaaggagatgattacagtcctccactttcacctgcacaatcacataatggtggggaacaagaaaaccaaggacgtgcagttctatgttgaagtgatggacgttgtgcagacaattgggggtggaaaaagatctgcttatgatcctgatgagattgaggaggaacagcgtgaaagggataggaaaaacaagattaacatggaatttcaaacatttgtgaataaggtaaatgacctctggacccagcctcagtttaaagggcttgatttggagtttgatcagccgttgagagaacttggattccacggggtaccccacaagtcaacagcttttatagtcccaacatctagctgccttgttgagctcgtagagacaccatttgttgtgatcactctctgtgagattgagatagtcaacttggagagggttggtctcgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="68416" stop="69642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68716" g_stop="69342" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E333289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68716" e_stop="69342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGC</genome_strand>
        <mrna_strand>CTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706216" ref_strand="+" ref_description="SGN-E706216 [FA29BD05]">
      <seq>aagggataggaaaaacaagattaacatggaatttcaaacatttgtgaataaggtaaatgacctctggacccagcctcagtttaaagggcttgatttggagtttgatcagccgttgagagaacttggattccacggggtaccccacaagtcaacagcttttatagtcccaacatctagctgccttgttgagctcgtagagacaccatttgttgtgatcactctctgtgagattgagatagtcaacttggagagggttggtctcgggcagaagaattttgacatgacaattatattcaaggacttcaaaagagatgttatgcgaattgattctatcccttcaacttctcttgatggcatcaaggagtggctcgatacaactgaccttaagtactatgagagcaggctgaatctgaactggcgtcagatactgaaaacaattactgatgatccggaagagttcatagagaatggtggatgggaatttttgaatttagaaggtactgattcggaatctgagaactcacaggagtctgatcaaggatatgaaccttcagatgtagagcccgtctcatcagacgaggaagatgatgaaagcgcatcactagttgagtcagatgatgatgaaggggaggactctgaggaatattcagaagaagaagggaaaaacatgggaagagctggaaagagaagcaagcaatgccgacagagagaaaggggctgaatcagacagtgancatgataggaagaggaggaatatgaagccttttgggaaaagtcgtcctccagagagaaaaaatctctctagcaacatttccaagagacccaggtttaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="68777" stop="70211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69077" g_stop="69911" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E706216" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69077" e_stop="69911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGG-AAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGTCGTCCTCCAGAGAGAAGAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTTAGGTAA</genome_strand>
        <mrna_strand>AAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGANCATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAAGTCGTCCTCCAGAGAGAAAAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTTAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698369" ref_strand="+" ref_description="SGN-E698369 [FA06AD06]">
      <seq>ccctttagcctcagtttaaagggcttgatttggagtttgatcagccgttgagagaacttggattccacggggtaccccacaagtcaacagcttttatagtcccaacatctagctgccttgttgagctcgtagagacaccatttgttgtgatcactctctgtgagattgagatagtcaacttggagagggttggtctcgggcagaagaattttgacatgacaattatattcaaggacttcaaaagagatgttatgcgaattgattctatcccttcaacttctcttgatggcatcaaggagtggctcgatacaactgaccttaagtactatgagagcaggctgaatctgaactggcgtcagatactgaaaacaattactgatgatccggaagagttcatagagaatggtggatgggaatttttgaatttagaaggtactgattcggaatctgagaactcacaggagtctgatcaaggatatgaaccttcagatgtagagcccgtctcatcagacgaggaagatgatgaaagcgcatcactagttgagtcagatgatgatgaaggggaggactctgaggaatattcagaagaagaagggaaaacatgggaagagctggaaagagaagccagcaatgccgacagagagaaaggggctgaatcagacagtgacaatgataggaagaggaggaatatgaagccttttgggaaaggtcgtcctcccgagagaagaaatctctctagcaacatttccaagagacccaggtttaaggtaaagagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="68848" stop="70218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69142" g_stop="69918" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E698369" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69142" e_stop="69918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGTCGTCCTCCAGAGAGAAGAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTT-AGGTAAAGAGTGC</genome_strand>
        <mrna_strand>CCCTTTAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCCAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGTCGTCCTCCCGAGAGAAGAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTTAAGGTAAAGAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698566" ref_strand="+" ref_description="SGN-E698566 [FA06DB11]">
      <seq>ccgttcagcctcagtttaaagggcttgatttggagtttgatcacccgttgagagaacttggattccacggggtaccccacaagtcaacagcttttatagtcccaacatctagctgccttgttgagctcgtagagacaccatttgttgtgatcactctctgtgagattgagatagtcaacttggagagggttggtctcgggcagaagaattttgacatgacaattatattcaaggacttcaaaagagatgttatgcgaattgattctatcccttcaacttctcttgatggcatcaaggagtggctcgatacaactgaccttaagtactatgagagcaggctgaatctgaactggcgtcagatactgaaaacaattactgatgatccggaagagttcatagagaatggtggatgggaatttttgaatttagaaggtactgattcggaatctgagaactcacaggagtctgatcaaggatatgaaccttcagatgtagagcccgtctcatcagacgaggaagatgatgaaagcgcatcactagttgagtcagatgatgatgaaggggaggactctgaggaatattcacaagaagaagggaaaacatgggaagagctggaaagagaagcaagcaatgccgacagagagaaaggggctgaatcagacagtgacaatgataggaagaggaggaatatgaagccttttgggaaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="68847" stop="70151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69142" g_stop="69851" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E698566" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69142" e_stop="69851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGT</genome_strand>
        <mrna_strand>CCGTTCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCACCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCACAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307231" ref_strand="+" ref_description="SGN-E307231 [cLEY-15-N12]">
      <seq>gattatgaaaatcaggcagcatcattattcttcccaatacagtatcttcccttgttaaaaacgcccaactacctactcccctgtccccacccccacctcagctcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78455" stop="80239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78755" g_stop="79149" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79939" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="557" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E307231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78755" e_stop="79149"/>
          <exon e_start="79778" e_stop="79939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACA</genome_strand>
        <mrna_strand>GATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265899" ref_strand="+" ref_description="SGN-E265899 [cLEI-11-H18]">
      <seq>caatacagtatcttcccttgttaaaaacgcccaactacctactcccctgtccccacccccacctcagcttattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78489" stop="80374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78789" g_stop="79149" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="538" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80074" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="578" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E265899" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78789" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTA</genome_strand>
        <mrna_strand>CAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTTATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745970" ref_strand="+" ref_description="SGN-E745970 [GI|47105432]">
      <seq>acagtatcttcccttgttaaaaacgcccaactacctactcccctgtccccacccccacctcagctcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgcaaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcagggagaaggaagccaagctaaaagcggctagaatgcatatctatgtacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaggagaggaacttggagttccccttgaggtttatggaccagaggctacaatgacgggaatttgtaaaggggcaattgattgcattatgtctgaagcataagtgccaaatgagaaagaagacttgtgttacattcttgcaattaagaagaaactttgttggatatttaatttgccttctgatattgttttgttacaaatgggacctttaaagaataatttgagatccttttgttttacccgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78493" stop="83741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78793" g_stop="79149" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="534" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="696" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="777" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="829" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="944" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="945" r_stop="1026" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1027" r_stop="1122" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1123" r_stop="1224" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="82434" g_stop="82550" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1225" r_stop="1341" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="82641" g_stop="82757" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1342" r_stop="1458" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="83222" g_stop="83449" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1459" r_stop="1686" r_length="228" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E745970" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78793" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82550"/>
          <exon e_start="82641" e_stop="82757"/>
          <exon e_start="83222" e_stop="83449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCAACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAACTAACTGTACGA</genome_strand>
        <mrna_strand>ACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAG..........................................................................................GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCCGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719820" ref_strand="+" ref_description="SGN-E719820 [FC08DH07]">
      <seq>aatcggccgaattggtccccacccccacctcagctcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78537" stop="81486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78837" g_stop="79149" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="327" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="504" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="666" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="747" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="799" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81186" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="835" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E719820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78837" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTA</genome_strand>
        <mrna_strand>GTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720785" ref_strand="+" ref_description="SGN-E720785 [FC11DD06]">
      <seq>gacccccacctcagctcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttattttcatagagatgaacccatttacgcttgtaaatggagagccttacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78543" stop="81514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78842" g_stop="79149" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="485" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="647" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="728" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="780" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81214" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="844" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E720785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78842" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATT</genome_strand>
        <mrna_strand>GACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTATTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705435" ref_strand="+" ref_description="SGN-E705435 [FA27AF01]">
      <seq>acgacgctcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacccttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78555" stop="81494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78849" g_stop="79149" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="477" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="639" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="720" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="772" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81194" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="816" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E705435" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78849" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTA</genome_strand>
        <mrna_strand>ACGAC-GCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACCCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355939" ref_strand="+" ref_description="SGN-E355939 [cLHT-21-H7]">
      <seq>ctcattcatctcactcaccagttgttgcctgtttggtgaaaacccacaattcttctactttaagataattccataaatttcctagttctagatcttcgttttttgtaatcaattatatacccaccaactgtttgtataattgtttgagagagagagttgtcgtttgtttgggttgtaagaaaaacagagtaatatggccaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcatcgatcttcagatctgctctgctcaagtgacagaatctacagattttacagagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78556" stop="80209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78856" g_stop="79149" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79909" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="424" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E355939" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78856" e_stop="79149"/>
          <exon e_start="79778" e_stop="79909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGAT</genome_strand>
        <mrna_strand>CTCATTCATCTCACTCACCAGTTGTTGCCTGTTTGGTGAAAACCCACAATTCTTCTACTTTAAGATAATTCCATAAATTTCCTAGTTCTAGATCTTCGTTTTTTGTAATCAATTATATACCCACCAACTGTTTGTATAATTGTTT--GAGAGAGAGAGTTGTCGTTTGTTTGGGTTGTAAGAAAAACAGAGTAATATGGCCAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATCGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACAGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302363" ref_strand="+" ref_description="SGN-E302363 [cLEW-27-I6]">
      <seq>tcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78557" stop="80463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78857" g_stop="79149" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="470" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80163" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="599" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E302363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78857" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGT</genome_strand>
        <mrna_strand>TCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337490" ref_strand="+" ref_description="SGN-E337490 [cTOE-11-N11]">
      <seq>tcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78557" stop="80163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78857" g_stop="79149" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79863" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="379" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E337490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78857" e_stop="79149"/>
          <exon e_start="79778" e_stop="79863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCT</genome_strand>
        <mrna_strand>TCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314658" ref_strand="+" ref_description="SGN-E314658 [cTOA-20-F20]">
      <seq>ctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78565" stop="80387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78865" g_stop="79149" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="462" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80087" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="515" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E314658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78865" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATT</genome_strand>
        <mrna_strand>CTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335026" ref_strand="+" ref_description="SGN-E335026 [cTOE-9-C4]">
      <seq>ttcttctaccttaagacaattcccattaaatttcactagttcttagatcttcgttttttgtaatcaattgcattaccccaccaacctgtttgtattaattgtttaagaagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtgnaaagagtggcttggtagctttgaatctggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78605" stop="80211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78905" g_stop="79149" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79911" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="388" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E335026" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78905" e_stop="79149"/>
          <exon e_start="79778" e_stop="79911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTACCTTAAGATAATT-CCA-TAAATTTCA-TAGTTC-TAGATCTTCGTTTTTTGTAATCAATTGCA-TA-CCCACCAA-CTGTTTGTA-TAATTGTTTAAG-AGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCT</genome_strand>
        <mrna_strand>TTCTTCTACCTTAAGACAATTCCCATTAAATTTCACTAGTTCTTAGATCTTCGTTTTTTGTAATCAATTGCATTACCCCACCAACCTGTTTGTATTAATTGTTTAAGAAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGNAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705322" ref_strand="+" ref_description="SGN-E705322 [FA26DB12]">
      <seq>aagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgntaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcctttcactcttggatgagaaaactagtgccctctttaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78617" stop="81793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78917" g_stop="79149" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="410" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="572" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="653" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="705" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="820" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="902" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E705322" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78917" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTT-CATTCACTCTTTGGATGAGAAA</genome_strand>
        <mrna_strand>AAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGNTAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCCTTTCACTC-TTGGATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318111" ref_strand="+" ref_description="SGN-E318111 [cTOA-29-L5]">
      <seq>tcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78664" stop="80430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78964" g_stop="79149" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="363" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80130" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="459" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E318111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78964" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAA</genome_strand>
        <mrna_strand>TCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205299" ref_strand="+" ref_description="SGN-E205299 [cLEC-25-J10]">
      <seq>gtttgtataattgtttaagagagagagagttgtcgttcgtttggattggaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaagttgggctgcacaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78685" stop="80450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78985" g_stop="79149" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="342" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80150" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="458" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E205299" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78985" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAG</genome_strand>
        <mrna_strand>GTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGGAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAAGTTGGGCTGCACAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710140" ref_strand="+" ref_description="SGN-E710140 [FA54BE07]">
      <seq>ccggtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgccaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78697" stop="82823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78994" g_stop="79149" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79886" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="265" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79887" i_stop="80825" i_length="939">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80826" g_stop="80861" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="301" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="416" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="498" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="594" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="696" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82434" g_stop="82523" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="786" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E710140" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78994" e_stop="79149"/>
          <exon e_start="79778" e_stop="79886"/>
          <exon e_start="80826" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAAT</genome_strand>
        <mrna_strand>CCGGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCCAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730838" ref_strand="+" ref_description="SGN-E730838 [LA25BD10]">
      <seq>cctttttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttaccgttttgaacccaaaaggtcgtatctggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78695" stop="82360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78994" g_stop="79149" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="333" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="495" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="576" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="628" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="743" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="825" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82006" g_stop="82060" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="880" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E730838" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78994" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAA</genome_strand>
        <mrna_strand>CCTTTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACCGTTTTGAACCCAAAAGGTCGTATCTGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706054" ref_strand="+" ref_description="SGN-E706054 [FA28DE06]">
      <seq>attgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttaccccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttccctctgccttttggaagagttttgagccctacccgaaagcttcattcactcctttggatggaaaaactagggcctctttaaaatttacagtttttgaacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78694" stop="82343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78994" g_stop="79149" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="333" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="495" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="576" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="628" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="744" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="829" r_length="85" r_score="0.902"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="0.88"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82006" g_stop="82043" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="868" r_length="39" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E706054" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78994" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTA-CCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTT-CCTCTGCCTTTTGGAAGAGTTTTGAGCCCTA-CCGAAAGCTTCATTCACT-CTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAG-TTTTGAACCCAAA</genome_strand>
        <mrna_strand>ATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCCGAAAGCTTCATTCACTCCTTTGGATGGAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGGGCCTCTTTAAAATTTACAGTTTTTGAACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717766" ref_strand="+" ref_description="SGN-E717766 [FC02CG04]">
      <seq>aatcggccgaattggtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatgntggctggaggtggtgcaagcgttatatatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78727" stop="82396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79037" g_stop="79149" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="132" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="309" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="471" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="552" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="604" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="719" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="801" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82006" g_stop="82096" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="892" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E717766" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79037" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTG</genome_strand>
        <mrna_strand>AAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGNTGGCTGGAGGTGGTGCAAGCGTTATATATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310101" ref_strand="+" ref_description="SGN-E310101 [cLEZ-8-F16]">
      <seq>taatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtgatctgaaatttttgtttttgttttatgcttctactttccttttagtcatcagtctcgatcaagccagcatgatctgtcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78747" stop="80823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79047" g_stop="79149" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="280" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="442" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80523" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="609" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E310101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79047" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCA</genome_strand>
        <mrna_strand>TAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304815" ref_strand="+" ref_description="SGN-E304815 [cLEX-10-J11]">
      <seq>gaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78756" stop="81170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79056" g_stop="79149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="271" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="433" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="514" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="566" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81162" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="578" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E304815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79056" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTA</genome_strand>
        <mrna_strand>GAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698286" ref_strand="+" ref_description="SGN-E698286 [FA05DC12]">
      <seq>ggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttccaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattccctctttggatgagaaaactagtgcctcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78820" stop="81793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79120" g_stop="79149" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="207" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="369" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="450" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="502" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="617" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="699" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E698286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79120" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA</genome_strand>
        <mrna_strand>GGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCCAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCCCTCTTTGGATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241401" ref_strand="+" ref_description="SGN-E241401 [cLED-28-P7]">
      <seq>tccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="79791" stop="82558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80091" g_stop="80196" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="187" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="239" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="354" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="436" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="532" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82238" g_stop="82258" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="553" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E241401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80091" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCC</genome_strand>
        <mrna_strand>TCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286430" ref_strand="+" ref_description="SGN-E286430 [cLES-11-P10]">
      <seq>aaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="79829" stop="81793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80129" g_stop="80196" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="149" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="201" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="316" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="398" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E286430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80129" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA</genome_strand>
        <mrna_strand>AAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322408" ref_strand="+" ref_description="SGN-E322408 [cTOB-24-J24]">
      <seq>tgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgcaaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="79872" stop="82839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80172" g_stop="80196" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="106" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="158" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="273" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="355" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="451" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="553" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82434" g_stop="82539" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="659" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E322408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80172" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTC</genome_strand>
        <mrna_strand>TGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315974" ref_strand="+" ref_description="SGN-E315974 [cTOA-23-A11]">
      <seq>agagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="79881" stop="81793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80181" g_stop="80196" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="149" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="264" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="346" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E315974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80181" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA</genome_strand>
        <mrna_strand>AGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305397" ref_strand="+" ref_description="SGN-E305397 [cLEX-15-K1]">
      <seq>ttccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="80069" stop="81793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80369" g_stop="80437" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="121" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="236" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="318" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E305397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80369" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA</genome_strand>
        <mrna_strand>TTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708963" ref_strand="+" ref_description="SGN-E708963 [FA42BA09]">
      <seq>cgcgataaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgcaaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcacggagaaggaagccaagctaaaagcggctagaatgcatatctatgtacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaggagaggaacttggagttccccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="80079" stop="83055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80379" g_stop="80437" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="112" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="227" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="309" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="405" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="507" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82434" g_stop="82550" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="624" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82641" g_stop="82755" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="739" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E708963" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80379" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82550"/>
          <exon e_start="82641" e_stop="82755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CG-GAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTG</genome_strand>
        <mrna_strand>CGCGATAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCACGGAGAAG..........................................................................................GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727264" ref_strand="+" ref_description="SGN-E727264 [LA14AG12]">
      <seq>gagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgcaaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcagggagaaggaagccaagctaaaagcggctagaatgcatatctatgtacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctangagaggaacttggagttccctttgaggtttatggaccagaggctacaatgacgggaatttgtaaaggggcaattgattgcattatgtctgaagcataagtgccaaatgagaaagaagacttgtgttacattcttgcaaataagaagaaactttgttggatatttaatttgccttctgatattgttttgttacaatgggaccttttaagaataattgaagatccttttggtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="80081" stop="83729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80381" g_stop="80437" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="109" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="224" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="306" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="402" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="504" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82434" g_stop="82550" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="621" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82641" g_stop="82757" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="738" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="83222" g_stop="83442" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="958" r_length="220" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E727264" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80381" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82550"/>
          <exon e_start="82641" e_stop="82757"/>
          <exon e_start="83222" e_stop="83442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCAACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAACTAAC</genome_strand>
        <mrna_strand>GAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAG..........................................................................................GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTANGAGAGGAACTTGGAGTTCCCTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAAATAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTAC-AATGGGACCTTTTAAGAATAATTGAAGATCCTTTTGGTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337827" ref_strand="+" ref_description="SGN-E337827 [cTOE-17-P10]">
      <seq>aaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgcaaatcctgatgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="80084" stop="82759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80384" g_stop="80437" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="106" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="221" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="303" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="399" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="501" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82434" g_stop="82459" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="527" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E337827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80384" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCG</genome_strand>
        <mrna_strand>AAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCAAATCCTGATGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307709" ref_strand="+" ref_description="SGN-E307709 [cLEY-16-M5]">
      <seq>ttaggttatgcctctgagcttggttactatgccgagtatggtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgcaaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcagggagaaggaagccaagctaaaagcggctagaatgcatatctatgtacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaggagaggaacttggagttccccttgaggtttatggaccagaggctacaatgacgggaatttgtaaaggggcaattgattgcattatgtctgaagcataagtgccaaatgagaaagaagacttgtgttacattcttgcaattaagaagaaactttgttggatatttaatttgccttctgatattgttttgttacaaatgggacctttaaagaataatttgagatccttttgttttacctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="81947" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82247" g_stop="82339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82434" g_stop="82550" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="210" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82641" g_stop="82757" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="327" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83222" g_stop="83437" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="543" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E307709" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82247" e_stop="82339"/>
          <exon e_start="82434" e_stop="82550"/>
          <exon e_start="82641" e_stop="82757"/>
          <exon e_start="83222" e_stop="83437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCAACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAA</genome_strand>
        <mrna_strand>TTAGGTTATGCCTCTGAGCTTGGTTACTATGCCGAGTATGGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAG..........................................................................................GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688114" ref_strand="+" ref_description="SGN-E688114 [T3_tus_85_L08]">
      <seq>gtaaatcctgatgggcgtaagacagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcagggagaaggttggctgtgtgctattttttacacgaagttttttactttttctatccataagaggcagaaaataatgtttttcctttgaatccgaacaggaagccaaactaaaagcggctagaatgcatatctatggactaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaagacaggaacttggaattccccttgaggtatgaaatatcacttggcgaaattcttattcctaagtgatacaatgactacacgtccctgaatttcaattatactacgtaatcctttgacatttttggaggtaacataaatactaaccacacatgccacagatgaagggatgttggagatcacaatttgcttttacttgatcctaggcattctgtttttttagttacatcttcccatgctatatcaattagcccgaccatggtgatgttactcataattacattcataagtaacttggtccatcttcatagatgtctgaggatcgtttgaggtcagacatcaagactacagcatgttccagttagaatatatgaacatggacttccaaagatgctgttaccagtattgttattaatacaccctacttcctaagttttcatattcaacgaaagtaagagataacgtataaaatttgtgtcgattctgctattgcaggtttatggaccagaggctacaatgacgggaatttgtaaaggggcaattgattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="82143" stop="83577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82443" g_stop="83277" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E688114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82443" e_stop="83277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACA-GTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCA-ACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCAT</genome_strand>
        <mrna_strand>GTAAATCCTGATGGGCGTAAGACAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACGAAGTTTTTTACTTTTTCTATCCATAAGAGGCAGAAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAACTAAAAGCGGCTAGAATGCATATCTATGGACTAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAAGACAGGAACTTGGAATTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAATGACTACACGTCCCTGAATTTCAATTATACTACGTAATCCTTTGACATTTTTGGAGGTAACATAAATACTAACCACACATGCCACAGATGAAGGGATGTTGGAGATCACAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCATGCTATATCAATTAGCCCGACCATGGTGATGTTACTCATAATTACATTCATAAGTAACTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAGCATGTTCCAGTTAGAATATATGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAACGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336974" ref_strand="+" ref_description="SGN-E336974 [cTOE-5-D20]">
      <seq>caaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcagggagaaggttggctgtgtgctattttttacacaaagttttttactttttctatagataagaggcagtaaataatgtttttcctttgaatccgaacaggaagccaagctaaaagcggctagaatgcatatctatgtacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaggagaggaacttggagttccccttgaggtatgaaatatcacttggcgaaattcttattcctaagtgatacagtgactacagtccctgaatttcaattatagtacgtaatcctttgacatttttggaggtaacatagatactaaccacacatgccacagatgaagggatgttgtagatcagaatttgcttttacttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="82144" stop="83229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82444" g_stop="82929" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E336974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82444" e_stop="82929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATC</genome_strand>
        <mrna_strand>CAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348550" ref_strand="+" ref_description="SGN-E348550 [cTOF-30-H22]">
      <seq>agaaggaagccaagctaaaagcggctagaatgcatatctatgtacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaggagaggaacttggagttccccttgaggtttatggaccagaggctacaatgacgggaatttgtaaaggggcaattgattgcattatgtctgaagcataagtgccaaatgagaaagaagacttgtgttacattcttgcaattaagaagaaactttgttggatatttaatttgccttctgatattgttttgttacaaatgggacctttaaagaataatttgagatccttttgttttacctggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="82335" stop="83741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82546" g_stop="82550" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82641" g_stop="82757" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="122" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83222" g_stop="83437" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="338" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="361"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E348550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82546" e_stop="82550"/>
          <exon e_start="82641" e_stop="82757"/>
          <exon e_start="83222" e_stop="83437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCAACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAA</genome_strand>
        <mrna_strand>AGAAG..........................................................................................GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544448" ref_strand="+" ref_description="SGN-E544448 [TUS-66-M14]">
      <seq>gtcataaatagtatataaattactccacttttcaaatccctataactaaaacacataacgatgaaattgtcaactttgttcatcttatattttttcactgtttctacacttgcaaatgcatctcttaagattggttactaccattcaagttgcccaaatgcagaatccattgtcagaaaagcagtcaacaaagccgtctctcgtaaccctggccttggcgctggcattatcaggatgcatttccatgattgttttgttaggggatgtgatgcctcaatccttttggatccaactccagggaatccaacagaaaaagaacatccagcaaataatccaagcttacgaggctatgaagtgatcgacgaagcaaaaattgaactagaatctatttgcccagaaacagtttcatgttcagatatcattgcatttgctgcaagagatagtgcttttaagcttggaggcattagatattcagttccatcaggtcgtcgagatggaagagtatccattaaagacgaaccaaccgcaaatctccccccttccacattaaatgctggagagcttgaggaaaattttgcaaaaaaaggactttctttagatgagatggtcacactttcgggtgcacattctattggaagatcacattgttcttccttttcagatagactttactctttcaattcaactcacccgcaagatccttcgatggatcctaaattagcccaacaattgatcaagagatgtccgcgtccttctaccactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="88461" stop="89942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88761" g_stop="89021" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89022" i_stop="89139" i_length="118">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89140" g_stop="89642" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="764" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E544448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88761" e_stop="89021"/>
          <exon e_start="89140" e_stop="89642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGGGTACGTCTCATTTTTTTAGAGAGTCAAACAATTTTTTCTTTTGATTTTGATTTTGTGCGATGAAATTAGTAAAATGTTAGTTCAACTGACAATATCTAACTTCATATAAATGATTCAGGGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTAGAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCATTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGACTTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGA</genome_strand>
        <mrna_strand>GTCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGG......................................................................................................................GGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTAGAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCATTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGACTTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308137" ref_strand="+" ref_description="SGN-E308137 [cLEY-14-O9]">
      <seq>tcataaatagtatataaattactccacttttcaaatccctataactaaaacacataacgatgaaattgtcaactttgttcatcttatattttttcactgtttctacacttgcaaatgcatctcttaagattggttactaccattcaagttgcccaaatgcagaatccattgtcagaaaagcagtcaacaaagccgtctctcgtaaccctggccttggcgctggcattatcaggatgcatttccatgattgttttgttaggggatgtgatgcctcaatccttttggatccaactccagggaatccaacagaaaaagaacatccagcaaataatccaagcttacgaggctatgaagtgatcgacgaagcaaaaattgaactacaatctatttgcccagaaacagtttcatgttcagatatcattgcatttgctgcaagagatagtgcttttaagcttggaggccttagatattcagttccatcaggtcgtcgagatggaagagtatccattaaagacgaaccaaccgcaaatctccccccttccacattaaatgctggagagcttgaagaaaattttgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="88462" stop="89760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88762" g_stop="89021" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89022" i_stop="89139" i_length="118">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89140" g_stop="89460" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="581" r_length="321" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E308137" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88762" e_stop="89021"/>
          <exon e_start="89140" e_stop="89460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGGGTACGTCTCATTTTTTTAGAGAGTCAAACAATTTTTTCTTTTGATTTTGATTTTGTGCGATGAAATTAGTAAAATGTTAGTTCAACTGACAATATCTAACTTCATATAAATGATTCAGGGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTAGAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCATTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAA</genome_strand>
        <mrna_strand>TCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGG......................................................................................................................GGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTACAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCCTTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAAGAAAATTTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544447" ref_strand="+" ref_description="SGN-E544447 [TUS-66-M14](-)">
      <seq>ccgcaaatttccccccttccacattaaatgctggagagcttgaggaaaattttgcaaaaaaaggacttttctttagatgagatggtcacactttcgggtgcacattctattggaagatcacattgttcttccttttcagatagactttactctttcaattcaactcacccgcaagatccttcgatggatcctaaattagcccaacaattgatcaagagatgtccgcgtccttctaccactgatccaattgctccacttgacgttgatactccaaataggctggacaataagtactatctcaatttgaagaataagagaggagtgttaacctcagatcagacgctatggaacagtccttcaacggctaggatggcgaggagtaacgcgattcatggtgcgaattgggctcataaatttgctgatgcaatggtgaaaatgggatccatagaggttatgactgggatacagggagagatcaggaagaattgcagggttgtgaattaatctattaatacttcttttttttttgttcttgtaattgtatcatcaccttttttttttattcattttcaatgtcgataacaaagtaactgattcttttcaattgtcataatttaaatatattgatttaagagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="89102" stop="90338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89402" g_stop="90037" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="646"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E544447" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89402" e_stop="90037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGAC-TTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGATCCAATTGCTCCACTTGACGTTGATACTCCAAATAGGCTGGACAATAAGTACTATCTCAATTTGAAGAATAAGAGAGGAGTGTTAACCTCAGATCAGACGCTATGGAACAGTCCTTCAACGGCTAGGATGGCGAGGAGTAACGCGATTCATGGTGCGAATTGGGCTCATAAATTTGCTGATGCAATGGTGAAAATGGGATCCATAGAGGTTATGACTGGGATACAGGGAGAGATCAGGAAGAATTGCAGGGTTGTGAATTAATCTATTAATACTTCTTCTTTTTTTTTGTTCTTGTAATTGTATCATCACATTTTTTTTTTATTCATTTTCAATGTCGATAACAAAGTAACTGATTCTTTTCAATTGTCATAATTTAAATATATTGATTTAAGAG</genome_strand>
        <mrna_strand>CCGCAAATTTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGACTTTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGATCCAATTGCTCCACTTGACGTTGATACTCCAAATAGGCTGGACAATAAGTACTATCTCAATTTGAAGAATAAGAGAGGAGTGTTAACCTCAGATCAGACGCTATGGAACAGTCCTTCAACGGCTAGGATGGCGAGGAGTAACGCGATTCATGGTGCGAATTGGGCTCATAAATTTGCTGATGCAATGGTGAAAATGGGATCCATAGAGGTTATGACTGGGATACAGGGAGAGATCAGGAAGAATTGCAGGGTTGTGAATTAATCTATTAATACTTC-T-TTTTTTTTTGTTCTTGTAATTGTATCATCACCTTTTTTTTTTATTCATTTTCAATGTCGATAACAAAGTAACTGATTCTTTTCAATTGTCATAATTTAAATATATTGATTTAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698527" ref_strand="+" ref_description="SGN-E698527 [FA06CF12]">
      <seq>agggtctataaataagactccaaagtcccttgtaaaaactcgcaagcatttggcgaaccaaaaatacaaagagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96688" stop="99051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96988" g_stop="97060" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97061" i_stop="98107" i_length="1047">
            <donor d_prob="0.063" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98751" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="717" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E698527" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96988" e_stop="97060"/>
          <exon e_start="98108" e_stop="98751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCTATAAATAAGACTCCAAAGTCTCAAGTAAAAACTCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCA</genome_strand>
        <mrna_strand>AGGGTCTATAAATAAGACTCCAAAGTCCCTTGTAAAAACTCGCAAGCATTTGGCGAACCAAAAATACAAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725058" ref_strand="+" ref_description="SGN-E725058 [FC25DG08]">
      <seq>cggccgaattggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="98977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97018" g_stop="97162" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98677" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="715" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E725058" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97018" e_stop="97162"/>
          <exon e_start="98108" e_stop="98677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAAACTCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACAC</genome_strand>
        <mrna_strand>CGGCCGAATTGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717635" ref_strand="+" ref_description="SGN-E717635 [FC02BB12]">
      <seq>aatcggccgaattggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="99113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="148" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98813" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="854" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E717635" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCT</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718202" ref_strand="+" ref_description="SGN-E718202 [FC04AA04]">
      <seq>aatcggccgaattggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacaaatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="99110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="148" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98810" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="851" r_length="703" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E718202" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCA</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAAATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719064" ref_strand="+" ref_description="SGN-E719064 [FC06CF03]">
      <seq>gcgattggcggccaatcggccgaattggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="99062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="161" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98762" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="816" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E719064" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTC</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720173" ref_strand="+" ref_description="SGN-E720173 [FC10AB05]">
      <seq>gggcgattggcggccaatcggccgaattggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="99060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="163" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98760" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="816" r_length="653" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E720173" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAG</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725194" ref_strand="+" ref_description="SGN-E725194 [FC26BE04]">
      <seq>gcgaattggcggccaatcggccgaattggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="99052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="162" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98752" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="807" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E725194" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCAT</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718481" ref_strand="+" ref_description="SGN-E718481 [FC04DC02]">
      <seq>aatcggccgaattggcaagcatttggcgaacctaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgaaattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="99029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="148" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98729" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="770" r_length="622" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E718481" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCC</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGAACCTAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAAATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718858" ref_strand="+" ref_description="SGN-E718858 [FC06AB10]">
      <seq>gattggcggccaatcggccgaattcccatggggatccgatggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttatttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96727" stop="99021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="175" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98721" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="789" r_length="614" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E718858" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATG</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTATTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725275" ref_strand="+" ref_description="SGN-E725275 [FC26CE02]">
      <seq>gccaaatcggccgaattcccatggggatcccaccgcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96725" stop="99019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="168" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98719" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="780" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E725275" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGA</genome_strand>
        <mrna_strand>CCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725111" ref_strand="+" ref_description="SGN-E725111 [FC26AD09]">
      <seq>aatcggccgaattggcaagcatttggcgaccctaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacctcagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96724" stop="98998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97027" g_stop="97162" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="148" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98698" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="739" r_length="591" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E725111" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97027" e_stop="97162"/>
          <exon e_start="98108" e_stop="98698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACA</genome_strand>
        <mrna_strand>TGGCAAGCATTTGGCGACCCTAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCTCAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746636" ref_strand="+" ref_description="SGN-E746636 [GI|47104114]">
      <seq>ggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96729" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97028" g_stop="97162" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="99473" g_length="1366"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="1501" r_length="1366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1512" polyA_stop="1526"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E746636" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1501</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97028" e_stop="97162"/>
          <exon e_start="98108" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719478" ref_strand="+" ref_description="SGN-E719478 [FC08AA02]">
      <seq>ggcaagcatttggcgacccataaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96729" stop="99203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97028" g_stop="97162" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98903" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="931" r_length="796" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E719478" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>931</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97028" e_stop="97162"/>
          <exon e_start="98108" e_stop="98903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCAT</genome_strand>
        <mrna_strand>GGCAAGCATTTGGCGACCCATAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720013" ref_strand="+" ref_description="SGN-E720013 [FC09CC07]">
      <seq>ggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96729" stop="99116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97028" g_stop="97162" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98816" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="844" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E720013" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97028" e_stop="97162"/>
          <exon e_start="98108" e_stop="98816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGC</genome_strand>
        <mrna_strand>GGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722475" ref_strand="+" ref_description="SGN-E722475 [FC17BE10]">
      <seq>ggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccaaacaagctctgtgatcaaatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtacactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96729" stop="99105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97028" g_stop="97162" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98805" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="833" r_length="698" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E722475" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97028" e_stop="97162"/>
          <exon e_start="98108" e_stop="98805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTA</genome_strand>
        <mrna_strand>GGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAAACAAGCTCTGTGATCAAATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTACACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722671" ref_strand="+" ref_description="SGN-E722671 [FC17DH05]">
      <seq>ggcaagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96729" stop="99098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97028" g_stop="97162" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98798" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="826" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E722671" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97028" e_stop="97162"/>
          <exon e_start="98108" e_stop="98798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTC</genome_strand>
        <mrna_strand>GGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723033" ref_strand="+" ref_description="SGN-E723033 [FC19AE12]">
      <seq>ggcaagcatttggcccccttaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96745" stop="99029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97028" g_stop="97162" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98729" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="756" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E723033" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97028" e_stop="97162"/>
          <exon e_start="98108" e_stop="98729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCC</genome_strand>
        <mrna_strand>GGCAAGCATTTGGC-CCCCTTAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722162" ref_strand="+" ref_description="SGN-E722162 [FC16BG01]">
      <seq>ggcaagcatttggcgcactaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96729" stop="98997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97028" g_stop="97162" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98697" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="725" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E722162" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97028" e_stop="97162"/>
          <exon e_start="98108" e_stop="98697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAAC</genome_strand>
        <mrna_strand>GGCAAGCATTTGGCGCACTAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719600" ref_strand="+" ref_description="SGN-E719600 [FC08BD03]">
      <seq>aagcatttggcgacccttaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96731" stop="98989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97031" g_stop="97162" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98689" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="714" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E719600" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97031" e_stop="97162"/>
          <exon e_start="98108" e_stop="98689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTC</genome_strand>
        <mrna_strand>AAGCATTTGGCGACCCTTAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708447" ref_strand="+" ref_description="SGN-E708447 [FA35DB10]">
      <seq>catttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96734" stop="99100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97034" g_stop="97162" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98800" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="822" r_length="693" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E708447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97034" e_stop="97162"/>
          <exon e_start="98108" e_stop="98800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCA</genome_strand>
        <mrna_strand>CATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720997" ref_strand="+" ref_description="SGN-E720997 [FC12BH07]">
      <seq>cccatggggatccgatcgctaaaatttggcgaaccaaaaatacaaagaggttatttctcccaaagggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96727" stop="99054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97034" g_stop="97162" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="151" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98754" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="798" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E720997" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97034" e_stop="97162"/>
          <exon e_start="98108" e_stop="98754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCA</genome_strand>
        <mrna_strand>AATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCCCAAAGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709113" ref_strand="+" ref_description="SGN-E709113 [FA42CH10]">
      <seq>cgcgtttaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccacggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattaaggtacacactgttcttatctcccacccacacgatgagaccgttaccaatgatgagattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96743" stop="99029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97036" g_stop="97162" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98729" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="749" r_length="622" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709113" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97036" e_stop="97162"/>
          <exon e_start="98108" e_stop="98729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCC</genome_strand>
        <mrna_strand>CGCGTTTAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCACGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAAGGTACACACTGTTCTTATCTCCCACCCACACGATGAGACCGTTACCAATGATGAGATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247095" ref_strand="+" ref_description="SGN-E247095 [cLEF-41-H18]">
      <seq>tttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96736" stop="98773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97036" g_stop="97162" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98473" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="493" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E247095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97036" e_stop="97162"/>
          <exon e_start="98108" e_stop="98473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGA</genome_strand>
        <mrna_strand>TTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306957" ref_strand="+" ref_description="SGN-E306957 [cLEY-11-B21]">
      <seq>tttggcgaaccaaaaatacaaagaggttaggtctctcaaggggtaaaaagatggccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96736" stop="98755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97036" g_stop="97162" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98455" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="475" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E306957" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97036" e_stop="97162"/>
          <exon e_start="98108" e_stop="98455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGA</genome_strand>
        <mrna_strand>TTTGGCGAACCAAAAATACAAAGAGGTTAGGTCTCTCAAGGGGTAAAAAGATGGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698539" ref_strand="+" ref_description="SGN-E698539 [FA06CH01]">
      <seq>cggtcagaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactatttttcaccttaacccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96739" stop="99113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97037" g_stop="97162" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98813" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="833" r_length="706" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E698539" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97037" e_stop="97162"/>
          <exon e_start="98108" e_stop="98813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGC-GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCT</genome_strand>
        <mrna_strand>CGGTCAGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTTCACCTTAACCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299892" ref_strand="+" ref_description="SGN-E299892 [cLEW-1-D18]">
      <seq>ttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96737" stop="98841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97037" g_stop="97162" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98541" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="560" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E299892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97037" e_stop="97162"/>
          <exon e_start="98108" e_stop="98541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTG</genome_strand>
        <mrna_strand>TTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299389" ref_strand="+" ref_description="SGN-E299389 [cLET-43-C6]">
      <seq>ttggcgaaccaaaaatacaaagaggttatttctctctaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaacattgtgcgtgacacatgccgcaatattggatttgcttgtgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96737" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97037" g_stop="97162" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98505" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="524" r_length="398" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E299389" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97037" e_stop="97162"/>
          <exon e_start="98108" e_stop="98505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATG</genome_strand>
        <mrna_strand>TTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCTAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAACATTGTGCGTGACACATGCCGCAATATTGGATTTGCTTGTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697500" ref_strand="+" ref_description="SGN-E697500 [FA03AF12]">
      <seq>ccgtttaaccaaaaatacaaagaggttatttctctcaaggggtacaaagattgcccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtacactatgagaagattgtgcgtgacacctgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgcccctaggagattggtgctggcgaccagggccacatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96743" stop="98789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97037" g_stop="97162" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98489" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="509" r_length="382" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E697500" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97037" e_stop="97162"/>
          <exon e_start="98108" e_stop="98489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCC-CTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTT</genome_strand>
        <mrna_strand>CCGTTTAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTACAAAGATTGCCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTACACTATGAGAAGATTGTGCGTGACACCTGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCTAGGAGATTGGTGCTGGCGACCAGGGCCACATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709200" ref_strand="+" ref_description="SGN-E709200 [FA51AA04]">
      <seq>cggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaccccatctggccgattcgttattggtggacctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96739" stop="99140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97038" g_stop="97162" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98840" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="858" r_length="733" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709200" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97038" e_stop="97162"/>
          <exon e_start="98108" e_stop="98840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCAT</genome_strand>
        <mrna_strand>CGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTACCCCATCTGGCCGATTCGTTATTGGTGGACCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708283" ref_strand="+" ref_description="SGN-E708283 [FA35BD06]">
      <seq>cgctaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="99175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97039" g_stop="97162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98875" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="892" r_length="768" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E708283" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97039" e_stop="97162"/>
          <exon e_start="98108" e_stop="98875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCAT</genome_strand>
        <mrna_strand>CGCTAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700287" ref_strand="+" ref_description="SGN-E700287 [FA12CG08]">
      <seq>ggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgccccgcgaacttaaggagcatgtcatccaaccagtcatcccaaagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96739" stop="99139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97039" g_stop="97162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98839" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="857" r_length="733" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E700287" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97039" e_stop="97162"/>
          <exon e_start="98108" e_stop="98839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTG-CCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCA</genome_strand>
        <mrna_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCCGCGAACTTAAGGAGCATGTCATCCAACCAGTCATCCCAAAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700540" ref_strand="+" ref_description="SGN-E700540 [FA13BF09]">
      <seq>ggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96739" stop="99111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97039" g_stop="97162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98811" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="828" r_length="704" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E700540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97039" e_stop="97162"/>
          <exon e_start="98108" e_stop="98811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCAT</genome_strand>
        <mrna_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700989" ref_strand="+" ref_description="SGN-E700989 [FA14CH08]">
      <seq>ggctatatcaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtataccaatgacaatggtgccatggttccaattagggtacacactgttcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96739" stop="98987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97039" g_stop="97162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98687" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="705" r_length="580" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E700989" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97039" e_stop="97162"/>
          <exon e_start="98108" e_stop="98687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGA-ACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATC</genome_strand>
        <mrna_strand>GGCTATATCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATACCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302294" ref_strand="+" ref_description="SGN-E302294 [cLEW-19-B20]">
      <seq>ctcgtgccgaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97039" g_stop="97162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="583" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E302294" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97039" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>CTCGTGCCGAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268133" ref_strand="+" ref_description="SGN-E268133 [cLEI-15-E20]">
      <seq>ggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgctcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcacatctctgatgcagttcttgatgcctgccttgagcaacatcccgagagcacagttgcatgtgaaacttgcaccaaaaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggattatgtttctgatgatgtcggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcgaagccctgatattgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96739" stop="98722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97039" g_stop="97162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98422" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="440" r_length="316" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E268133" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97039" e_stop="97162"/>
          <exon e_start="98108" e_stop="98422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATT-TGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCA</genome_strand>
        <mrna_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGCTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCACATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAACATCCCGAGAGCACAGTTGCATGTGAAACTTGCACCAAAACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTATGTTTCTGATGATGTCGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCGAAGCCCTGATATTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397418" ref_strand="+" ref_description="SGN-E397418 [TUS-45-N19]">
      <seq>ggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggcctttggtgagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96739" stop="98580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97039" g_stop="97162" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98280" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="297" r_length="173" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E397418" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97039" e_stop="97162"/>
          <exon e_start="98108" e_stop="98280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCA</genome_strand>
        <mrna_strand>GGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGCCTTTGGTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707248" ref_strand="+" ref_description="SGN-E707248 [FA32BH05]">
      <seq>ccgtaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="99175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98875" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="891" r_length="768" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E707248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCAT</genome_strand>
        <mrna_strand>CCGTACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293679" ref_strand="+" ref_description="SGN-E293679 [cLET-21-O1]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtatactatgagaagattgtgcgtgacacatgccgtcatattggatttgcttctgatgatgttggacttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="582" r_length="459" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E293679" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTATACTATGAGAAGATTGTGCGTGACACATGCCGTCATATTGGATTTGCTTCTGATGATGTTGGACTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307903" ref_strand="+" ref_description="SGN-E307903 [cLEY-20-B5]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="582" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E307903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269393" ref_strand="+" ref_description="SGN-E269393 [cLEM-2-A9]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccaaggccacatgtttggctatgcaacagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98505" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="521" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E269393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATG</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAAGGCCACATGTTTGGCTATGCAACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267890" ref_strand="+" ref_description="SGN-E267890 [cLEI-12-J15]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgactctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttgggcatggtctttggtgagatcacaaccaatgctattgtatactatgagaagattgtgcgtgacacatgccgtactattggatttgcttctgatgatgttggtcttgatgctgacaactgccaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggtcatctgaccaaacgccccgaggagattggtgctggtgaccatggccacatgtttggctatgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98500" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="516" r_length="393" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267890" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAAC</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGACTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGGCATGGTCTTTGGTGAGATCACAACCAATGCTATTGTATACTATGAGAAGATTGTGCGTGACACATGCCGTACTATTGGATTTGCTTCTGATGATGTTGGTCTTGATGCTGACAACTGCCAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGTCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCATGGCCACATGTTTGGCTATGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355885" ref_strand="+" ref_description="SGN-E355885 [cLHT-12-D8]">
      <seq>gcgaaccaaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98490" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="506" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E355885" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTG</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295375" ref_strand="+" ref_description="SGN-E295375 [cLET-23-K18]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaggattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgttcacggccatctgaccaaacgccccgaggagattggtgctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98473" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="489" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E295375" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGA</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAGGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTTCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285665" ref_strand="+" ref_description="SGN-E285665 [cLES-5-J21]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98461" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="477" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E285665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGAT</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293596" ref_strand="-" ref_description="SGN-E293596 [cLET-15-P19](-)">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgatgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggcctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgcttacattgagcagcatagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98452" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="468" r_length="345" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E293596" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293596" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCC</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGATGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGCCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGCTTACATTGAGCAGCATAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293595" ref_strand="+" ref_description="SGN-E293595 [cLET-15-P19]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgatgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggcctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgcttacattgagcagcatagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98452" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="468" r_length="345" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E293595" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCC</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGATGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGCCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGCTTACATTGAGCAGCATAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266860" ref_strand="+" ref_description="SGN-E266860 [cLEI-7-L12]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98428" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="444" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGT</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355669" ref_strand="+" ref_description="SGN-E355669 [cLHT-1-I3]">
      <seq>gcgaaccaaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98423" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="439" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E355669" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAA</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358715" ref_strand="+" ref_description="SGN-E358715 [cLHT-22-N18]">
      <seq>gcgaaccaaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="437" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E358715" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248165" ref_strand="+" ref_description="SGN-E248165 [cLEF-55-A20]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98420" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="436" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248165" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCT</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266888" ref_strand="+" ref_description="SGN-E266888 [cLEI-7-G3]">
      <seq>gcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttagttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98415" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="431" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266888" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATA</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTAGTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355995" ref_strand="+" ref_description="SGN-E355995 [cLHT-21-H11]">
      <seq>gcgaaccaaaaatacaaagaggttttttctctcagggggtaaaaagattgccccttttccacatttataaacctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccatgaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccggaatattggatttgtttctgattgatgttggtcttgaatgctgacaactgcaaggtccttgtttacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98398" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="416" r_length="293" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E355995" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGA-TGATGTTGGTCTTG-ATGCTGACAACTGCAAGGTCCTTGTTTACATTGA</genome_strand>
        <mrna_strand>GCGAACCAAAAATACAAAGAGGTTTTTTCTCTCAGGGGGTAAAAAGATTGCCCCTTTTCCACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCATGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGGAATATTGGATTTGTTTCTGATTGATGTTGGTCTTGAATGCTGACAACTGCAAGGTCCTTGTTTACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303882" ref_strand="+" ref_description="SGN-E303882 [cLEX-4-K23]">
      <seq>gcgaaccataaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgctcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggagagatcacaaccaatgctattgctgactatgagaagattgtgcgtgacacatgccgtcatattggattcggttctgatgatgttggacttgatgctgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96740" stop="98675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97040" g_stop="97162" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98375" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="391" r_length="268" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E303882" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97040" e_stop="97162"/>
          <exon e_start="98108" e_stop="98375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAAC</genome_strand>
        <mrna_strand>GCGAACCATAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGCTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGAGAGATCACAACCAATGCTATTGCTGACTATGAGAAGATTGTGCGTGACACATGCCGTCATATTGGATTCGGTTCTGATGATGTTGGACTTGATGCTGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728454" ref_strand="+" ref_description="SGN-E728454 [LA17DE04]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98657" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="672" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E728454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATG</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321288" ref_strand="+" ref_description="SGN-E321288 [cTOB-23-I10]">
      <seq>cgaaccaaaaatacgaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctgcaggtgtccacggccatctgaccaaacgccccgaagagattggtgctggtgaccaccgccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctgggtgaggcctgatggcaagaaccaagttactgttgagtatagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98642" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="657" r_length="535" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E321288" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAAT</genome_strand>
        <mrna_strand>CGAACCAAAAATACGAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTGCAGGTGTCCACGGCCATCTGACCAAACGCCCCGAAGAGATTGGTGCTGGTGACCACCGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGGTGAGGCCTGATGGCAAGAACCAAGTTACTGTTGAGTATAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328567" ref_strand="+" ref_description="SGN-E328567 [cTOC-23-B9]">
      <seq>cgaaccaaaaatacgaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccacacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttaataagtccgcaagaatggcacctgcgactggttgaagcctgatggcaagaccaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98625" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="638" r_length="516" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E328567" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTA</genome_strand>
        <mrna_strand>CGAACCAAAAATACGAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCACACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA-ATAAGTCCGCAAGAATGGCACCTGCGACTGGTTGAAGCCTGATGGCAAGA-CCAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329204" ref_strand="+" ref_description="SGN-E329204 [cTOD-2-P16]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="581" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E329204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324638" ref_strand="+" ref_description="SGN-E324638 [cTOC-9-E18]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcaatcacgtgcttgcaactaaacttggtgcccgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98565" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="580" r_length="458" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E324638" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAATCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336692" ref_strand="+" ref_description="SGN-E336692 [cTOE-5-C17]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaagagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98565" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="580" r_length="458" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E336692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAAGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266411" ref_strand="+" ref_description="SGN-E266411 [cLEI-3-D19]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggctccatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98542" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="557" r_length="435" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266411" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCTCCATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203899" ref_strand="+" ref_description="SGN-E203899 [cLEC-17-J9]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98539" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="554" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E203899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266978" ref_strand="+" ref_description="SGN-E266978 [cLEI-7-D8]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagcgccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98538" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="553" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGCGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358994" ref_strand="+" ref_description="SGN-E358994 [cLHT-24-L16]">
      <seq>cgaaccaaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98490" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="505" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E358994" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTG</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329862" ref_strand="+" ref_description="SGN-E329862 [cTOD-3-B18]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98490" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="505" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E329862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTG</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265193" ref_strand="+" ref_description="SGN-E265193 [cLEI-2-H3]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98488" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="503" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E265193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTT</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300932" ref_strand="+" ref_description="SGN-E300932 [cLEW-8-K7]">
      <seq>cgaaccatttatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtctactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaacgtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacgggcatctgaccaaacgccccgaggagattggtgctggtgaccagtgccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96751" stop="98785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98485" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="500" r_length="378" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E300932" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACAT</genome_strand>
        <mrna_strand>CGAACCATTTATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTCTACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAACGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGGCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGTGCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301016" ref_strand="+" ref_description="SGN-E301016 [cLEW-22-I23]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaagtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98475" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="490" r_length="368" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E301016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAAGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298110" ref_strand="+" ref_description="SGN-E298110 [cLEW-12-K18]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98474" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="489" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E298110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGAC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308177" ref_strand="+" ref_description="SGN-E308177 [cLEY-14-D5]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98474" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="489" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E308177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGAC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303024" ref_strand="+" ref_description="SGN-E303024 [cLEW-26-I24]">
      <seq>cgaaccaaaaatacaaagaggtgggttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98472" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="487" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E303024" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTG</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTGGGTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261539" ref_strand="+" ref_description="SGN-E261539 [cLEG-57-K6]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98452" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="467" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E261539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245982" ref_strand="+" ref_description="SGN-E245982 [cLEF-54-A12]">
      <seq>cgaaccaaaaatacaattaggttatttctctcaacgggtaagaagatggccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgaaaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgaatgtggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaagggtgtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98431" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="447" r_length="325" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E245982" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAA-GGTGTCCA</genome_strand>
        <mrna_strand>CGAACCAAAAATACAATTAGGTTATTTCTCTCAACGGGTAAGAAGATGGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAAAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGAATGTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGGTGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245833" ref_strand="+" ref_description="SGN-E245833 [cLEF-51-A15]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="436" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E245833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298120" ref_strand="+" ref_description="SGN-E298120 [cLEW-9-C13]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtcgactatgagaagattgtgcgtgacacatgccggaatattggatttgtttcttatgatgttggtcttgatgctgacaactgcaacgtccttgtttacattgagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98403" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="418" r_length="296" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E298120" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGC</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTCGACTATGAGAAGATTGTGCGTGACACATGCCGGAATATTGGATTTGTTTCTTATGATGTTGGTCTTGATGCTGACAACTGCAACGTCCTTGTTTACATTGAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208714" ref_strand="+" ref_description="SGN-E208714 [cLEC-39-J16]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98401" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="416" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E208714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCA</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245291" ref_strand="+" ref_description="SGN-E245291 [cLEF-44-L18]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagatcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaacgctattgtagactatgagaagattgtgcgtgacacatgccgcaatattggatttgtttctgatgatgaaggtcttgatgctgacaactgcaaggtccttgtttacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98396" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="411" r_length="289" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E245291" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATT</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGATCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAACGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGCAATATTGGATTTGTTTCTGATGATGAAGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297436" ref_strand="+" ref_description="SGN-E297436 [cLEW-13-B1]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtggagagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98370" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="385" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E297436" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTG</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTGGAGAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365732" ref_strand="+" ref_description="SGN-E365732 [cLPT-8-O18]">
      <seq>cgaaccaaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaataatggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98342" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="357" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E365732" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTT</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATAATGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328766" ref_strand="+" ref_description="SGN-E328766 [cTOC-23-B8]">
      <seq>cgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgcctcgagcaagatccctagagcaaagttccctgtgaaacttgcaccaagaccaccttggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96741" stop="98564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97041" g_stop="97162" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98264" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="279" r_length="157" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E328766" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97041" e_stop="97162"/>
          <exon e_start="98108" e_stop="98264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATG</genome_strand>
        <mrna_strand>CGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTCGAGCAAGATCCCTAGAGCAAAGTTCCCTGTGAAACTTGCACCAAGACCACCTTGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249753" ref_strand="+" ref_description="SGN-E249753 [cLEF-57-I24]">
      <seq>gaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96742" stop="98842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97042" g_stop="97162" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98542" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="556" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97042" e_stop="97162"/>
          <exon e_start="98108" e_stop="98542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</genome_strand>
        <mrna_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244418" ref_strand="+" ref_description="SGN-E244418 [cLEF-3-I19]">
      <seq>gaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcattcacgtgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96742" stop="98841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97042" g_stop="97162" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98541" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="555" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E244418" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97042" e_stop="97162"/>
          <exon e_start="98108" e_stop="98541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTG</genome_strand>
        <mrna_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCATTCACGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247884" ref_strand="+" ref_description="SGN-E247884 [cLEF-47-M12]">
      <seq>gaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccggcttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96742" stop="98838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97042" g_stop="97162" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98538" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="553" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E247884" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97042" e_stop="97162"/>
          <exon e_start="98108" e_stop="98538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCC-CCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</genome_strand>
        <mrna_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCGGCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204667" ref_strand="+" ref_description="SGN-E204667 [cLEC-14-B9]">
      <seq>gaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacgggcatctgaccaaacgccccgaggagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96742" stop="98763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97042" g_stop="97162" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98463" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="477" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E204667" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97042" e_stop="97162"/>
          <exon e_start="98108" e_stop="98463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTG</genome_strand>
        <mrna_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGGCATCTGACCAAACGCCCCGAGGAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270085" ref_strand="+" ref_description="SGN-E270085 [cLEM-7-B13]">
      <seq>gaaccaaaaatacaaagaggttatttctctcaaggggtaaagagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96742" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97042" g_stop="97162" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="435" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E270085" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97042" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAGAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208638" ref_strand="+" ref_description="SGN-E208638 [cLEC-39-E2]">
      <seq>gaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96742" stop="98669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97042" g_stop="97162" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98369" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="383" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E208638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97042" e_stop="97162"/>
          <exon e_start="98108" e_stop="98369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCT</genome_strand>
        <mrna_strand>GAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256776" ref_strand="+" ref_description="SGN-E256776 [cLEG-40-K17]">
      <seq>aaccaaaaatacttagaagttatttctctcaacgggtaaaaagagggccccttttcgacatttataatcctctctttctctttgatcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaactaaggtcacccagacaagctctgtgatcacatctctgatgcacttcttgatgcctgccttgagcaagatcccgatagcaaagttgcatgttaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtaaactatgagaagattgcgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgcttacattgagcaccaaagtcctgatattgctcaaggtgtccacggccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96743" stop="98739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97043" g_stop="97162" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98439" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="452" r_length="332" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E256776" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97043" e_stop="97162"/>
          <exon e_start="98108" e_stop="98439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATC</genome_strand>
        <mrna_strand>AACCAAAAATACTTAGAAGTTATTTCTCTCAACGGGTAAAAAGAGGGCCCCTTTTCGACATTTATAATCCTCTCTTTCTCTTTGATCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACTAAGGTCACCCAGACAAGCTCTGTGATCACATCTCTGATGCACTTCTTGATGCCTGCCTTGAGCAAGATCCCGATAGCAAAGTTGCATGTTAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAAACTATGAGAAGATTGCGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGCTTACATTGAGCACCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330192" ref_strand="+" ref_description="SGN-E330192 [cTOD-4-E11]">
      <seq>accaaaaataccaaagaggttatttctctcaaagggtaaaaagaatgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagaatcacaaccaaggctattgtagactatgagaagaattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaagtgtccacggccatctgaccaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96744" stop="98752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97044" g_stop="97162" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98452" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="467" r_length="347" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E330192" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97044" e_stop="97162"/>
          <exon e_start="98108" e_stop="98452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAATA-CAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAG-ATCACAACCAAGGCTATTGTAGACTATGAGAAGA-TTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCC</genome_strand>
        <mrna_strand>ACCAAAAATACCAAAGAGGTTATTTCTCTCAAAGGGTAAAAAGAATGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGAATCACAACCAAGGCTATTGTAGACTATGAGAAGAATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAAGTGTCCACGGCCATCTGACCAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266896" ref_strand="+" ref_description="SGN-E266896 [cLEI-7-I9]">
      <seq>gccaaaaatacaaagaggttatttctctcaagagggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96745" stop="98671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97044" g_stop="97162" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98371" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="384" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266896" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97044" e_stop="97162"/>
          <exon e_start="98108" e_stop="98371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAATACAAAGAGGTTATTTCTCTCAAG-GGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGA</genome_strand>
        <mrna_strand>GCCAAAAATACAAAGAGGTTATTTCTCTCAAGAGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367727" ref_strand="+" ref_description="SGN-E367727 [cLPT-14-K23]">
      <seq>accaaaaatacaaagaggttttttctctcaaggggtaaaaagattgcccctttcggacatttataaacctctttttctctttgttcgccgctgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctgtgggatcaaatctctgatgcacatcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctctggtgagatcacaaccaaggctattgtatactatgagaagattgtgcgtgacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96744" stop="98626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97044" g_stop="97162" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98326" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="338" r_length="219" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E367727" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97044" e_stop="97162"/>
          <exon e_start="98108" e_stop="98326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATG</genome_strand>
        <mrna_strand>ACCAAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTCGGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGCTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTGTGGGATCAAATCTCTGATGCACATCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTCTGGTGAGATCACAACCAAGGCTATTGTATACTATGAGAAGATTGTGCGTGACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744674" ref_strand="+" ref_description="SGN-E744674 [GI|429103]">
      <seq>gaattcctacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96752" stop="99767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97045" g_stop="97162" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="99468" g_length="1361"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="1479" r_length="1361" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E744674" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97045" e_stop="97162"/>
          <exon e_start="98108" e_stop="99468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATA</genome_strand>
        <mrna_strand>GAATTCCTACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710789" ref_strand="+" ref_description="SGN-E710789 [FA56CH11]">
      <seq>ccataaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96745" stop="99098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97045" g_stop="97162" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98798" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="809" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E710789" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97045" e_stop="97162"/>
          <exon e_start="98108" e_stop="98798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTC</genome_strand>
        <mrna_strand>CCATAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304732" ref_strand="+" ref_description="SGN-E304732 [cLEX-11-B20]">
      <seq>ccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96745" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97045" g_stop="97162" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="432" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E304732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97045" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249734" ref_strand="+" ref_description="SGN-E249734 [cLEF-57-C20]">
      <seq>ccaaaaatacaaagaggttatttctctcaaagggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaagtccttgtttacattgagcagcaaagtcctgatattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96745" stop="98720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97045" g_stop="97162" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98420" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="431" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249734" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97045" e_stop="97162"/>
          <exon e_start="98108" e_stop="98420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCT</genome_strand>
        <mrna_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAAGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAAGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205359" ref_strand="+" ref_description="SGN-E205359 [cLEC-25-F8]">
      <seq>gcaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttagacatttatgatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtatactatgagaagattgtgcgtgacacatgccgcaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97045" g_stop="97162" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98397" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="408" r_length="290" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E205359" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97045" e_stop="97162"/>
          <exon e_start="98108" e_stop="98397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTG</genome_strand>
        <mrna_strand>GCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTAGACATTTATGATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTATACTATGAGAAGATTGTGCGTGACACATGCCGCAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708373" ref_strand="+" ref_description="SGN-E708373 [FA35CD03]">
      <seq>cattaaacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccacttaaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="99175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98875" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="884" r_length="768" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E708373" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCAT</genome_strand>
        <mrna_strand>CATTAA-ACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACTTAAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699710" ref_strand="+" ref_description="SGN-E699710 [FA11AA02]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattgggtggacctctgggggatgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="99151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98851" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="862" r_length="745" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E699710" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATT-GGTGGACCTCATGGTGATGCTGG</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGGTGGACCTCTGGGGGATGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705975" ref_strand="+" ref_description="SGN-E705975 [FA28CF05]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="99150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98850" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="860" r_length="743" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E705975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTG</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709026" ref_strand="+" ref_description="SGN-E709026 [FA42BH06]">
      <seq>caaaaatacaaagacgttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="99128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98828" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="838" r_length="721" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709026" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATT</genome_strand>
        <mrna_strand>CAAAAATACAAAGACGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701709" ref_strand="+" ref_description="SGN-E701709 [FA16CH08]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgaaaatactattttccaccttaacccatctggccgattcgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="99127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98827" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="837" r_length="720" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E701709" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTAT</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAAAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703870" ref_strand="+" ref_description="SGN-E703870 [FA22CG09]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="99084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98784" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="794" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E703870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATG</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538131" ref_strand="+" ref_description="SGN-E538131 [TUS-57-B17]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcctgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcgacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggagcccgtcttacagaagtccgctagaatggcacctgcgcctggatgaggcctgatggccagacccaagttactgttgagtatagcaatgaccatggtgccatggttccaattaaggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="99033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98733" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="743" r_length="626" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E538131" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCG</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCCTGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCGACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGAGCCCGTCTTACAGAAGTCCGCTAGAATGGCACCTGCGCCTGGATGAGGCCTGATGGCCAGACCCAAGTTACTGTTGAGTATAGCAATGACCATGGTGCCATGGTTCCAATTAAGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246713" ref_strand="+" ref_description="SGN-E246713 [cLEF-45-B9]">
      <seq>ccaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgncagattggcacctgcgcctggttgatgcctgatggcaagacccaagttactgttgagtatagcaatgaccatggtgccatggtttcaattagggtacacactgttcttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98688" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="698" r_length="581" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E246713" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCT</genome_strand>
        <mrna_strand>CCAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGNCAGATTGGCACCTGCGCCTGGTTGATGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACCATGGTGCCATGGTTTCAATTAGGGTACACACTGTTCTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731213" ref_strand="+" ref_description="SGN-E731213 [LA26BH08]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98688" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="698" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E731213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCT</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247587" ref_strand="+" ref_description="SGN-E247587 [cLEF-42-J9]">
      <seq>gctcgtgccgaattcggcacgagaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="598" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E247587" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>GAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312657" ref_strand="+" ref_description="SGN-E312657 [cLEZ-20-J2]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="576" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E312657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303891" ref_strand="+" ref_description="SGN-E303891 [cLEX-4-O3]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaacttccttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccaacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98564" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="575" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E303891" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCC-ACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTT</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTCCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCAACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726009" ref_strand="+" ref_description="SGN-E726009 [LA10AB02]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98468" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="478" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E726009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCT</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301307" ref_strand="+" ref_description="SGN-E301307 [cLEW-24-N8]">
      <seq>caaaaatacaaagaggttatttctctcaaagggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaagtccttgtttacattgagcagcaaagtcctgatattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97162" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98420" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="430" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E301307" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97162"/>
          <exon e_start="98108" e_stop="98420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCT</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAAGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAAGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542064" ref_strand="+" ref_description="SGN-E542064 [TUS-63-C21]">
      <seq>caaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgaggtaattttaagtttagctagttgaatactagtctttttctgtttctttcatcgggttttgctgttttcttgctgggtgttttatgatagatctggggtttttgtgcaaaatttcttttggggtttttgaagtgatgaaagattgtgtttttatttggtttgtttagggttggttgtgttttagcttgagtgttgggaacaggggagggaaggaacagtttcttgaatctggaaatgaactaatttttcctgttaatttgtctttccatgaaaattttgaaatgcttctgtatttttgctcttaaaaaaccctgctttatactgaaaactttgatgttctcaacatgtttgtttttttgtaaaattatttttgtgtgttctgggtgatctttgtttctttgtatcatgattataaattacagtatgtgttgtttttcaaaattacgtagagattagaagtagttgattggtatggtggaggttttgtcttgtnagagatcagctagatctagtgcaaatatgcttgtgccaactttggagtagaagattctagcttaactctattgtgtttttaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97046" g_stop="97740" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E542064" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97046" e_stop="97740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGT</genome_strand>
        <mrna_strand>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTNAGAGATCAGCTAGATCTAGTGCAAATATGCTTGTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326853" ref_strand="+" ref_description="SGN-E326853 [cTOC-25-O23]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattanggtacacactgttcttatctccacccaacacgatgagaccgttaccnatgatgagattgcccgcgaccttnaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="99098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98798" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="807" r_length="691" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E326853" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTANGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCNATGATGAGATTGCCCGCGACCTTNAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333186" ref_strand="+" ref_description="SGN-E333186 [cTOD-20-A19]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98689" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="698" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E333186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328676" ref_strand="+" ref_description="SGN-E328676 [cTOC-23-K7]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98647" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="656" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E328676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAA</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325583" ref_strand="+" ref_description="SGN-E325583 [cTOC-15-F15]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98643" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="652" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E325583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710153" ref_strand="+" ref_description="SGN-E710153 [FA54BG03]">
      <seq>ccaattacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagccaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccaaggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98597" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="606" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E710153" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGG</genome_strand>
        <mrna_strand>CCAATTACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCCAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAAGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267555" ref_strand="+" ref_description="SGN-E267555 [cLEI-8-E4]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98594" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="603" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299589" ref_strand="+" ref_description="SGN-E299589 [cLEW-20-G17]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98588" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="597" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E299589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303874" ref_strand="+" ref_description="SGN-E303874 [cLEX-4-I21]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98588" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="597" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E303874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285105" ref_strand="+" ref_description="SGN-E285105 [cLER-20-E15]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98568" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="577" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E285105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269113" ref_strand="+" ref_description="SGN-E269113 [cLEI-16-G5]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98562" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="571" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E269113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266588" ref_strand="+" ref_description="SGN-E266588 [cLEI-5-L10]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaactcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacatatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98561" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="570" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266588" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGT</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAACTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACATATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334048" ref_strand="+" ref_description="SGN-E334048 [cTOD-24-O14]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatggtggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaagagattggtgctggtgaccaangccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98553" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="562" r_length="446" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E334048" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGGTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAAGAGATTGGTGCTGGTGACCAANGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265295" ref_strand="+" ref_description="SGN-E265295 [cLEI-9-M20]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98546" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="555" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E265295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACT</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269980" ref_strand="+" ref_description="SGN-E269980 [cLEM-7-L5]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgctgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98543" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="552" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E269980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCA</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGCTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299973" ref_strand="+" ref_description="SGN-E299973 [cLEW-11-E14]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98543" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="552" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E299973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCA</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364813" ref_strand="+" ref_description="SGN-E364813 [cLPT-4-C20]">
      <seq>aaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtacacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98542" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="551" r_length="435" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E364813" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTACACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248678" ref_strand="+" ref_description="SGN-E248678 [cLEF-58-O15]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttatgatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaacgctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtgcacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98539" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="548" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATGATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAACGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTGCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247003" ref_strand="+" ref_description="SGN-E247003 [cLEF-41-G8]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttctcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcaatcacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98538" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="546" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E247003" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTC-TCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAATCACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267047" ref_strand="+" ref_description="SGN-E267047 [cLEI-4-M1]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaggattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaataccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatctgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagtgccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98537" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="546" r_length="430" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267047" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAGGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAATACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATCTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGTGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357194" ref_strand="+" ref_description="SGN-E357194 [cLHT-17-N20]">
      <seq>aaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggctatgcaacagatgagacccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98514" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="523" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E357194" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCAACAGATGAGACCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304837" ref_strand="+" ref_description="SGN-E304837 [cLEX-10-J8]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccaaggccacatgtttggctatgcaacagatgagacccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98514" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="523" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E304837" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAAGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366641" ref_strand="+" ref_description="SGN-E366641 [cLPT-17-K23]">
      <seq>aaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtacacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98492" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="501" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E366641" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTACACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358198" ref_strand="+" ref_description="SGN-E358198 [cLHT-23-J15]">
      <seq>aaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98490" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="499" r_length="383" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E358198" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305010" ref_strand="+" ref_description="SGN-E305010 [cLEX-10-I7]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98475" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="484" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E305010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327234" ref_strand="+" ref_description="SGN-E327234 [cTOC-19-M1]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcanggtgtccacggccatctgaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98447" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="456" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E327234" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAA</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCANGGTGTCCACGGCCATCTGACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332888" ref_strand="+" ref_description="SGN-E332888 [cTOD-19-A2]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98445" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="454" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E332888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCA</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364814" ref_strand="+" ref_description="SGN-E364814 [cLPT-4-C22]">
      <seq>aaaaatacatttaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgatcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcacttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgcatactatgagaagattgtgcgtgacacatgccgaaatattggattcgtttctgatgacgccggtcttgacgctgacaactgcaaggtccttgtttacattgagcaacaaaatcctgatattgctcaaggtgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96759" stop="98731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98431" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="440" r_length="324" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E364814" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCA</genome_strand>
        <mrna_strand>AAAAATACATTTAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGATCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCACTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGCATACTATGAGAAGATTGTGCGTGACACATGCCGAAATATTGGATTCGTTTCTGATGACGCCGGTCTTGACGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAACAAAATCCTGATATTGCTCAAGGTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298220" ref_strand="+" ref_description="SGN-E298220 [cLEW-9-G16]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaacgctattgtctactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaacgtccttgtttacattgagcagcaaagtcctgatattgctcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98425" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="434" r_length="318" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E298220" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAACGCTATTGTCTACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAACGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306894" ref_strand="+" ref_description="SGN-E306894 [cLEY-11-C17]">
      <seq>aaaaatactaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="430" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E306894" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>AAAAATACTAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366634" ref_strand="+" ref_description="SGN-E366634 [cLPT-17-G7]">
      <seq>aaaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgataatggaaactttcttattcacctacgagtctgtgaacgatggtcacccagacaagctctgtgatcatatctctgatgcaattcttgatgcctgccttgagcaatatccctagagcaaagttgcatgtgaaacttgcaccacgaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtcgactatgacaagattgtgcgtgacacatgccgtaatattggatttgcttctgatgatgttggccttgatgctcacaactgctacgtccttgcttacattgagcatcgaagtcctgatattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98420" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="429" r_length="313" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E366634" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCT</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTACGAGTCTGTGAACGATGGTCACCCAGACAAGCTCTGTGATCATATCTCTGATGCAATTCTTGATGCCTGCCTTGAGCAATATCCCTAGAGCAAAGTTGCATGTGAAACTTGCACCACGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTCGACTATGACAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGCTTCTGATGATGTTGGCCTTGATGCTCACAACTGCTACGTCCTTGCTTACATTGAGCATCGAAGTCCTGATATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289359" ref_strand="+" ref_description="SGN-E289359 [cLES-18-N8]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98417" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="426" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E289359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATT</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358069" ref_strand="+" ref_description="SGN-E358069 [cLHT-23-I15]">
      <seq>aaaaattcaaagaggttttttctctgaaggggtaaagggattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98399" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="408" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E358069" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAG</genome_strand>
        <mrna_strand>AAAAATTCAAAGAGGTTTTTTCTCTGAAGGGGTAAAGGGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267814" ref_strand="+" ref_description="SGN-E267814 [cLEI-12-E1]">
      <seq>aaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98399" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="408" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAG</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267093" ref_strand="+" ref_description="SGN-E267093 [cLEI-4-D15]">
      <seq>aaaaatacaattaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98381" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="390" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267093" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAG</genome_strand>
        <mrna_strand>AAAAATACAATTAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292035" ref_strand="+" ref_description="SGN-E292035 [cLET-7-B12]">
      <seq>aaaaatacaaagaggttatttctctcacggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcacatctctgatgcagttcttgatgcctgccttgagcaagatccctagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgacaagattgcgcgtgacacatgccgtaatattggatttgtttctgatgatgttgggcttgatgctgacaactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98380" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="389" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E292035" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAA</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCTCTCACGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCACATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCTAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGACAAGATTGCGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGGCTTGATGCTGACAACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267333" ref_strand="+" ref_description="SGN-E267333 [cLEI-17-O21]">
      <seq>aaaaatacaaagaggttatttcggtcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcaattcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98372" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="381" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267333" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGAC</genome_strand>
        <mrna_strand>AAAAATACAAAGAGGTTATTTCGGTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAATTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298238" ref_strand="+" ref_description="SGN-E298238 [cLEW-18-A24]">
      <seq>aaaaatacaaataggttatttctctcaaggggtaaaaagaggaccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98286" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="295" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E298238" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCA</genome_strand>
        <mrna_strand>AAAAATACAAATAGGTTATTTCTCTCAAGGGGTAAAAAGAGGACCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265364" ref_strand="+" ref_description="SGN-E265364 [cLEI-9-A5]">
      <seq>aaaaatacaaataggttatttctctcaaggggtaaaaagatgtgccccttttcgacatttataatcctctgtttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96747" stop="98584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97047" g_stop="97162" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98284" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="294" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E265364" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97047" e_stop="97162"/>
          <exon e_start="98108" e_stop="98284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGAT-TGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAAC</genome_strand>
        <mrna_strand>AAAAATACAAATAGGTTATTTCTCTCAAGGGGTAAAAAGATGTGCCCCTTTTCGACATTTATAATCCTCTGTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366944" ref_strand="+" ref_description="SGN-E366944 [cLPT-6-A24]">
      <seq>aaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtacacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaaatccgcaagaatggcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98590" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="598" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E366944" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTG</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTACACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAATCCGCAAGAATGGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300144" ref_strand="+" ref_description="SGN-E300144 [cLEW-11-B10]">
      <seq>aaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="574" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E300144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333906" ref_strand="+" ref_description="SGN-E333906 [cTOD-24-K24]">
      <seq>aaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttgggtgccgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98565" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="573" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E333906" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGGTGCCGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307294" ref_strand="+" ref_description="SGN-E307294 [cLEY-12-D1]">
      <seq>aaaatacaaagaggttatttctctcaaggggtaaaaagattgcccgttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98565" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="573" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E307294" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCGTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307351" ref_strand="+" ref_description="SGN-E307351 [cLEY-12-L10]">
      <seq>aaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98559" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="567" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E307351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCC</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324602" ref_strand="+" ref_description="SGN-E324602 [cTOC-9-G3]">
      <seq>aaaatacaaagaggttatttctctcaaagggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98545" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="553" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E324602" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAAC</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTATTTCTCTCAAAGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305459" ref_strand="+" ref_description="SGN-E305459 [cLEX-15-H15]">
      <seq>aaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98539" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="547" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E305459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300020" ref_strand="+" ref_description="SGN-E300020 [cLEW-11-B22]">
      <seq>aaaatacaaagatgttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgccgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaactagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaacgctattgtagactatgagaagattgtgcgtgacacatgccgaaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccaccgccatctgaccaaactccccgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98458" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="466" r_length="351" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E300020" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGA</genome_strand>
        <mrna_strand>AAAATACAAAGATGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGCCGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACTAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAACGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGAAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACCGCCATCTGACCAAACTCCCCGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209531" ref_strand="+" ref_description="SGN-E209531 [cLEC-54-L3]">
      <seq>aaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98411" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="419" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E209531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCT</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358878" ref_strand="+" ref_description="SGN-E358878 [cLHT-24-I17]">
      <seq>aaaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96748" stop="98678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97048" g_stop="97162" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98378" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="386" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E358878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97048" e_stop="97162"/>
          <exon e_start="98108" e_stop="98378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGC</genome_strand>
        <mrna_strand>AAAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724127" ref_strand="+" ref_description="SGN-E724127 [FC23AE12]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgatacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacaaaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="99019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98719" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="726" r_length="612" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E724127" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGA</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGATACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAAAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321700" ref_strand="+" ref_description="SGN-E321700 [cTOB-25-E17]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98657" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="664" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E321700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATG</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729057" ref_strand="+" ref_description="SGN-E729057 [LA19DD04]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggcctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgtattaatgcctatcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98625" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="632" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E729057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTA</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGCCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGTATTAATGCCTATCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315330" ref_strand="+" ref_description="SGN-E315330 [cTOA-24-P9]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98600" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="607" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E315330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTG</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307483" ref_strand="+" ref_description="SGN-E307483 [cLEY-12-J20]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98541" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="548" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E307483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTG</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301220" ref_strand="+" ref_description="SGN-E301220 [cLEW-22-P18]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98492" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="499" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E301220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGC</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367682" ref_strand="+" ref_description="SGN-E367682 [cLPT-14-B10]">
      <seq>aaatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagccctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtacacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98488" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="495" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E367682" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTT</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCCCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTACACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248250" ref_strand="+" ref_description="SGN-E248250 [cLEF-55-K23]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98463" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="470" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248250" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTG</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306194" ref_strand="+" ref_description="SGN-E306194 [cLEY-13-D9]">
      <seq>aaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96749" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97049" g_stop="97162" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="428" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E306194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97049" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>AAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703214" ref_strand="+" ref_description="SGN-E703214 [FA20DE07]">
      <seq>aatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagaaaagtaccttgatgagaatactatttttccccttaacccttctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96750" stop="99116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97050" g_stop="97162" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98816" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="822" r_length="709" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E703214" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97050" e_stop="97162"/>
          <exon e_start="98108" e_stop="98816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGC</genome_strand>
        <mrna_strand>AATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAAAAGTACCTTGATGAGAATACTATTTTTCCCCTTAACCCTTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365298" ref_strand="+" ref_description="SGN-E365298 [cLPT-2-C12]">
      <seq>aatacaaagaggttttttctctcaaggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtacacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96750" stop="98858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97050" g_stop="97162" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98558" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="564" r_length="451" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E365298" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97050" e_stop="97162"/>
          <exon e_start="98108" e_stop="98558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCC</genome_strand>
        <mrna_strand>AATACAAAGAGGTTTTTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTACACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249075" ref_strand="+" ref_description="SGN-E249075 [cLEF-49-F1]">
      <seq>aatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagagccacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96750" stop="98790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97050" g_stop="97162" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98490" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="496" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249075" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97050" e_stop="97162"/>
          <exon e_start="98108" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTG</genome_strand>
        <mrna_strand>AATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGAGCCACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208894" ref_strand="+" ref_description="SGN-E208894 [cLEC-51-P1]">
      <seq>atacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggggcccgtcttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96751" stop="98868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97051" g_stop="97162" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98568" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="573" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E208894" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97051" e_stop="97162"/>
          <exon e_start="98108" e_stop="98568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAG</genome_strand>
        <mrna_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGGGCCCGTCTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278776" ref_strand="+" ref_description="SGN-E278776 [cLER-2-M8]">
      <seq>atacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcagagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgcaatattggatctgacactgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcatagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96751" stop="98798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97051" g_stop="97162" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98498" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="503" r_length="391" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E278776" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97051" e_stop="97162"/>
          <exon e_start="98108" e_stop="98498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCA</genome_strand>
        <mrna_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAGAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGCAATATTGGATCTGACACTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCATAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266944" ref_strand="+" ref_description="SGN-E266944 [cLEI-7-B11]">
      <seq>atacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgctgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccacacaagctctgtgatcagatctctgatgcacttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaacgctattgcagactatgagaagattgcgcgtgacacatgccgtaatattggatatgttactgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggtcatctgaccaaacaccccgacgagattggtgctggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96751" stop="98774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97051" g_stop="97162" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98474" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="479" r_length="367" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266944" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97051" e_stop="97162"/>
          <exon e_start="98108" e_stop="98474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGAC</genome_strand>
        <mrna_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGCTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCACACAAGCTCTGTGATCAGATCTCTGATGCACTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAACGCTATTGCAGACTATGAGAAGATTGCGCGTGACACATGCCGTAATATTGGATATGTTACTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGTCATCTGACCAAACACCCCGACGAGATTGGTGCTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279027" ref_strand="+" ref_description="SGN-E279027 [cLER-2-N8]">
      <seq>atacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96751" stop="98754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97051" g_stop="97162" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98454" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="459" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E279027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97051" e_stop="97162"/>
          <exon e_start="98108" e_stop="98454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCG</genome_strand>
        <mrna_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208895" ref_strand="+" ref_description="SGN-E208895 [cLEC-51-P3]">
      <seq>atacaaagaggttatttctctcaaggggtaaaaagattgccccttgtcgacatttataatcctctttttctctttgttcgccggtggggtcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgcgatcagatctctgatgcagctcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96751" stop="98558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97051" g_stop="97162" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98258" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="263" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E208895" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97051" e_stop="97162"/>
          <exon e_start="98108" e_stop="98258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTG</genome_strand>
        <mrna_strand>ATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTGTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGGTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGCGATCAGATCTCTGATGCAGCTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267391" ref_strand="+" ref_description="SGN-E267391 [cLEI-8-I9]">
      <seq>tacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96752" stop="98723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97052" g_stop="97162" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98423" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="427" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97052" e_stop="97162"/>
          <exon e_start="98108" e_stop="98423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAA</genome_strand>
        <mrna_strand>TACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266257" ref_strand="+" ref_description="SGN-E266257 [cLEI-3-D23]">
      <seq>acaaagaggttatttctctcaaggggtaaaaagatggccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96753" stop="98708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97053" g_stop="97162" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98408" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="411" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266257" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97053" e_stop="97162"/>
          <exon e_start="98108" e_stop="98408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGT</genome_strand>
        <mrna_strand>ACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATGGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705812" ref_strand="+" ref_description="SGN-E705812 [FA28AH02]">
      <seq>caaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatgntgatgctggtctcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96754" stop="99159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97054" g_stop="97162" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98859" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="861" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E705812" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97054" e_stop="97162"/>
          <exon e_start="98108" e_stop="98859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTG</genome_strand>
        <mrna_strand>CAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGNTGATGCTGGTCTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306191" ref_strand="+" ref_description="SGN-E306191 [cLEY-13-D1]">
      <seq>caaagaggttatttctctccagggggaacaatattgccccttttccacatttataatcctctttctctgtctggacgcccaagggttcttcactttcctgttccttgagaatggagactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagccagatccccatagccactcttcgtgtcaaacttgcaccaacaccaacttggtcatggactttggtgagatcacaaccaaggctattgtagactatgacaagattgtgcgtgacacatgccgtaatattggatttgttactgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96754" stop="98731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97054" g_stop="97162" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.82"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98431" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="433" r_length="324" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E306191" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97054" e_stop="97162"/>
          <exon e_start="98108" e_stop="98431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCA</genome_strand>
        <mrna_strand>CAAAGAGGTTATTTCTCTCCAGGGGGAACAATATTGCCCCTTTTCCACATTTATAATCCTCTTTCTCTGTCTGGACGCCCAAGGGTTCTTCACTTTCCTGTTCCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCCAGATCCCCATAGCCACTCTTCGTGTCAAACTTGCACCAACACCAACTTGGTCATGGACTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGACAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTACTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302132" ref_strand="+" ref_description="SGN-E302132 [cLEW-19-F19]">
      <seq>aaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96755" stop="98888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97055" g_stop="97162" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98588" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="589" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E302132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97055" e_stop="97162"/>
          <exon e_start="98108" e_stop="98588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACC</genome_strand>
        <mrna_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267866" ref_strand="+" ref_description="SGN-E267866 [cLEI-12-M18]">
      <seq>aaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96755" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97055" g_stop="97162" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="567" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97055" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302308" ref_strand="+" ref_description="SGN-E302308 [cLEW-19-F24]">
      <seq>aaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96755" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97055" g_stop="97162" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="567" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E302308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97055" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297747" ref_strand="+" ref_description="SGN-E297747 [cLEW-15-M15]">
      <seq>aaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagcttttggcgaacattaaaaagattgtgcttgacacatgccgcaatattgcatttgtttctgatgatgtcggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96755" stop="98747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97055" g_stop="97162" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98447" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="449" r_length="341" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E297747" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97055" e_stop="97162"/>
          <exon e_start="98108" e_stop="98447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAG-ACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAA</genome_strand>
        <mrna_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTTTTGGCGAACATTAAAAAGATTGTGCTTGACACATGCCGCAATATTGCATTTGTTTCTGATGATGTCGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206670" ref_strand="+" ref_description="SGN-E206670 [cLEC-31-L16]">
      <seq>aaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96755" stop="98679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97055" g_stop="97162" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98379" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="380" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E206670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97055" e_stop="97162"/>
          <exon e_start="98108" e_stop="98379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCA</genome_strand>
        <mrna_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297387" ref_strand="+" ref_description="SGN-E297387 [cLEW-14-D18]">
      <seq>aaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96755" stop="98546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97055" g_stop="97162" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98246" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="247" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E297387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97055" e_stop="97162"/>
          <exon e_start="98108" e_stop="98246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACC</genome_strand>
        <mrna_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722561" ref_strand="+" ref_description="SGN-E722561 [FC17CE10]">
      <seq>aagaggttatttcatctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaaattgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtaaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96756" stop="98604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97056" g_stop="97162" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98304" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="305" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E722561" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97056" e_stop="97162"/>
          <exon e_start="98108" e_stop="98304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGTTATTTC-TCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATG</genome_strand>
        <mrna_strand>AAGAGGTTATTTCATCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAATTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710180" ref_strand="+" ref_description="SGN-E710180 [FA54CA10]">
      <seq>ccgttttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccccatgtttggctatgcaacagatgagacccctgaattaatgcctctcatgcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccccaagaatggcacctgcgcctggttgaggcctgatggcaacaccccagctactgttgagtatagcaatgacactggtgccatggctccaattacggtacacactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96762" stop="98981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97057" g_stop="97162" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98681" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="680" r_length="574" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E710180" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97057" e_stop="97162"/>
          <exon e_start="98108" e_stop="98681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTT</genome_strand>
        <mrna_strand>CCGTTTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCCCATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCATGCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCCCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAACACCCCAGCTACTGTTGAGTATAGCAATGACACTGGTGCCATGGCTCCAATTACGGTACACACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244438" ref_strand="+" ref_description="SGN-E244438 [cLEF-3-E8]">
      <seq>agaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcaccttcgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccgaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatggtggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagcgccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96757" stop="98841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97057" g_stop="97162" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98541" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="540" r_length="434" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E244438" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97057" e_stop="97162"/>
          <exon e_start="98108" e_stop="98541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTG</genome_strand>
        <mrna_strand>AGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTTCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCGAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGGTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGCGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723849" ref_strand="+" ref_description="SGN-E723849 [FC22AG02]">
      <seq>agaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcaaatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggaaattggtgctggtgaccagggccacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96757" stop="98790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97057" g_stop="97162" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98490" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="489" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E723849" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97057" e_stop="97162"/>
          <exon e_start="98108" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTG</genome_strand>
        <mrna_strand>AGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAAATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAAATTGGTGCTGGTGACCAGGGCCACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721631" ref_strand="+" ref_description="SGN-E721631 [FC14CF11]">
      <seq>aggttatttctctcaaggggtaaaaagactgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaaaacccaagttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96759" stop="98928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97059" g_stop="97162" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98628" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="625" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E721631" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97059" e_stop="97162"/>
          <exon e_start="98108" e_stop="98628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTG</genome_strand>
        <mrna_strand>AGGTTATTTCTCTCAAGGGGTAAAAAGACTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAAACCCAAGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249602" ref_strand="+" ref_description="SGN-E249602 [cLEF-56-E8]">
      <seq>aggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96759" stop="98717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97059" g_stop="97162" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98417" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="414" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97059" e_stop="97162"/>
          <exon e_start="98108" e_stop="98417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATT</genome_strand>
        <mrna_strand>AGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308180" ref_strand="+" ref_description="SGN-E308180 [cLEY-14-D21]">
      <seq>aggttatttctctcaaggggtgggaagattgccccttttcgacatttataatcctctttttctctttgatcgccgctgggttcttcactatcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96759" stop="98586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97059" g_stop="97162" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98286" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="283" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E308180" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97059" e_stop="97162"/>
          <exon e_start="98108" e_stop="98286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCA</genome_strand>
        <mrna_strand>AGGTTATTTCTCTCAAGGGGTGGGAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGATCGCCGCTGGGTTCTTCACTATCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358603" ref_strand="+" ref_description="SGN-E358603 [cLHT-22-N22]">
      <seq>ggttttttctctcaaggggtaaaaagagtgccccttggcgacatttataaacctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtcaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96760" stop="98754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97060" g_stop="97162" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98454" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="450" r_length="347" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E358603" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97060" e_stop="97162"/>
          <exon e_start="98108" e_stop="98454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCG</genome_strand>
        <mrna_strand>GGTTTTTTCTCTCAAGGGGTAAAAAGAGTGCCCCTTGGCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTCAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297057" ref_strand="+" ref_description="SGN-E297057 [cLEW-7-L13]">
      <seq>gttatttctctcaaggggtcaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccggtgggttcttcactttcctgtttctcagagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcacgatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggccatggtctttggcgagatcacaaccaaggctattgtctactatgagaagattgtgcgtgacacatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96761" stop="98628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97061" g_stop="97162" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98328" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="324" r_length="221" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E297057" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97061" e_stop="97162"/>
          <exon e_start="98108" e_stop="98328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCT-TGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCC</genome_strand>
        <mrna_strand>GTTATTTCTCTCAAGGGGTCAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCACGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGCCATGGTCTTTGGCGAGATCACAACCAAGGCTATTGTCTACTATGAGAAGATTGTGCGTGACACATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303254" ref_strand="+" ref_description="SGN-E303254 [cLEX-5-G2]">
      <seq>ttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96762" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97062" g_stop="97162" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="415" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E303254" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97062" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>TTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301059" ref_strand="+" ref_description="SGN-E301059 [cLEW-22-F17]">
      <seq>tatttctctcaaggggtaaggggattgtccctttttgacatgtataatcctctttcactctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttatatcaccttcgagtctgtgaacgaaggtcacccacacaagctatgtgatctgatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccactgccatctgaccaaacgcccccaggagattggtgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96785" stop="98772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97063" g_stop="97162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98472" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="466" r_length="366" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E301059" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97063" e_stop="97162"/>
          <exon e_start="98108" e_stop="98472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTAT-TCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTG</genome_strand>
        <mrna_strand>TATTTCTCTCAAGGGGTAAGGGGATTGTCCCTTTTTGACATGTATAATCCTCTTTCACTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATATCACCTTCGAGTCTGTGAACGAAGGTCACCCACACAAGCTATGTGATCTGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACTGCCATCTGACCAAACGCCCCCAGGAGATTGGTGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296728" ref_strand="+" ref_description="SGN-E296728 [cLEW-3-G21]">
      <seq>atttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggcctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96764" stop="98824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97064" g_stop="97162" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98524" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="516" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E296728" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97064" e_stop="97162"/>
          <exon e_start="98108" e_stop="98524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCC</genome_strand>
        <mrna_strand>ATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGCCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250247" ref_strand="+" ref_description="SGN-E250247 [cLEG-6-A23]">
      <seq>caaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcaatcacgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96772" stop="98839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97072" g_stop="97162" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98539" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="523" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E250247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97072" e_stop="97162"/>
          <exon e_start="98108" e_stop="98539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</genome_strand>
        <mrna_strand>CAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAATCACGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355883" ref_strand="+" ref_description="SGN-E355883 [cLHT-12-D4]">
      <seq>ggggtaaaaagattgccccttttcgacatttataaacctctttttctctttgttcgcccttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaacaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96775" stop="98607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97075" g_stop="97162" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98307" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="288" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E355883" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97075" e_stop="97162"/>
          <exon e_start="98108" e_stop="98307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGA</genome_strand>
        <mrna_strand>GGGGTAAAAAGATTGCCCCTTTTCGACATTTATAAACCTCTTTTTCTCTTTGTTCGCCCTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAACACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270305" ref_strand="+" ref_description="SGN-E270305 [cLEM-1-B22]">
      <seq>aaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96782" stop="98865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97082" g_stop="97162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98565" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="539" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E270305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97082" e_stop="97162"/>
          <exon e_start="98108" e_stop="98565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</genome_strand>
        <mrna_strand>AAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324103" ref_strand="+" ref_description="SGN-E324103 [cTOC-3-F19]">
      <seq>aaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagatccttgtcaaaattggtggtccagcttgatattttataggtaaaaagagatttcattgggccttttctttaattttgtcagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96782" stop="98715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97082" g_stop="97162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="97745" i_length="583">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97746" g_stop="97827" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="163" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97828" i_stop="98107" i_length="280">
            <donor d_prob="0.472" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98108" g_stop="98415" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="471" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E324103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97082" e_stop="97162"/>
          <exon e_start="97746" e_stop="97827"/>
          <exon e_start="98108" e_stop="98415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATA</genome_strand>
        <mrna_strand>AAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAG........................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266450" ref_strand="+" ref_description="SGN-E266450 [cLEI-3-H2]">
      <seq>agattgccccttttcgacatttataatcctctttttctctgtgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctgcgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaactaggtcatggtctttggtgacatcacaaccaaggctattgtagactgtgagaagattgtgcgtgacacatgccgcaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggagaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96784" stop="98839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97084" g_stop="97162" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98539" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="511" r_length="432" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266450" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97084" e_stop="97162"/>
          <exon e_start="98108" e_stop="98539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</genome_strand>
        <mrna_strand>AGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTGTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTGCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTAGGTCATGGTCTTTGGTGACATCACAACCAAGGCTATTGTAGACTGTGAGAAGATTGTGCGTGACACATGCCGCAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGAGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298140" ref_strand="+" ref_description="SGN-E298140 [cLEW-9-M13]">
      <seq>attgccccttttcgacatttataatcctctttttctctttgttccccggtgggttcttcactttcctgtttcttgaggtaattttaagtttagctagttgaatactagtctttttctgtttctttcatcgggttttgctgttttcttgctgggtgttttatgatagatctggggtttttgtgcaaaatttcttttggggtttttgaagtgatgaaagattgtgttcttatttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96786" stop="97622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97086" g_stop="97322" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E298140" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97086" e_stop="97322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTT</genome_strand>
        <mrna_strand>ATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCCCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTCTTATTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689397" ref_strand="+" ref_description="SGN-E689397 [t3_tus_84_I20]">
      <seq>cccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgaaaatactatttcccacctaacccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96791" stop="99114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97091" g_stop="97162" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98814" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="778" r_length="706" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E689397" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97091" e_stop="97162"/>
          <exon e_start="98108" e_stop="98814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTG</genome_strand>
        <mrna_strand>CCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAAAATACTATTTCCCACC-TAACCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333004" ref_strand="+" ref_description="SGN-E333004 [cTOD-19-N16]">
      <seq>ccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccnattanggtacacactgttcttatctcccacccacacgatgagaccgttaccaatgatgagattgcccgcgaccttanggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96792" stop="99097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97092" g_stop="97162" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98797" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="761" r_length="690" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E333004" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97092" e_stop="97162"/>
          <exon e_start="98108" e_stop="98797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTT</genome_strand>
        <mrna_strand>CCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCNATTANGGTACACACTGTTCTTATCTCCCACCCACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTANGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300708" ref_strand="+" ref_description="SGN-E300708 [cLEW-8-O5]">
      <seq>ccttttcgacatttataatcctctttttctctttgttcgccggtgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaacgctattgtcgactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96792" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97092" g_stop="97162" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="385" r_length="314" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E300708" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97092" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>CCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAACGCTATTGTCGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323706" ref_strand="+" ref_description="SGN-E323706 [cTOC-2-P7]">
      <seq>cttttcgacatttataatcctctctttctctttgttcgccgttgggttctacactttcctgtttctagagaatggaaactttcttattcacctccgagtctgtgaacgaaggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaatatcccgataccaaagtcgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtatactatgacaagattgtgcgtgacacatgccgtaatattggatttgtttcttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96793" stop="98655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97093" g_stop="97162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98355" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="319" r_length="249" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E323706" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97093" e_stop="97162"/>
          <exon e_start="98108" e_stop="98355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTC-TGATGATG</genome_strand>
        <mrna_strand>CTTTTCGACATTTATAATCCTCTCTTTCTCTTTGTTCGCCGTTGGGTTCTACACTTTCCTGTTTCTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAAGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAATATCCCGATACCAAAGTCGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTATACTATGACAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302451" ref_strand="+" ref_description="SGN-E302451 [cLEW-27-B15]">
      <seq>ttttcgagatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96794" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97094" g_stop="97162" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98566" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="528" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E302451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97094" e_stop="97162"/>
          <exon e_start="98108" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>TTTTCGAGATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305991" ref_strand="+" ref_description="SGN-E305991 [cLEY-17-L21]">
      <seq>acatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgcctgaatattggatttgtttctgatgatgttggtcttgatgctgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96800" stop="98675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97100" g_stop="97162" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98375" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="331" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E305991" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97100" e_stop="97162"/>
          <exon e_start="98108" e_stop="98375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAAC</genome_strand>
        <mrna_strand>ACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCTGAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717381" ref_strand="+" ref_description="SGN-E717381 [FC01AC04]">
      <seq>catttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgtcctatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgcctttttattggatttgtttctgatgatgtttgtcttgatgctgacaactgccaggtccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96801" stop="98689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97101" g_stop="97162" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98389" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="345" r_length="283" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E717381" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97101" e_stop="97162"/>
          <exon e_start="98108" e_stop="98389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAG-AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGT</genome_strand>
        <mrna_strand>CATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCTTTTTATTGGATTTGTTTCTGATGATGTTTGTCTTGATGCTGACAACTGCCAGGTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719219" ref_strand="+" ref_description="SGN-E719219 [FC07AE10]">
      <seq>tttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgaaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96803" stop="98987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97103" g_stop="97162" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98687" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="640" r_length="580" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E719219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97103" e_stop="97162"/>
          <exon e_start="98108" e_stop="98687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATC</genome_strand>
        <mrna_strand>TTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGAAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709339" ref_strand="+" ref_description="SGN-E709339 [FA51CA05]">
      <seq>tttataatcctctttttctctttgttcgccgctgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccacacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtacactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaaccgccccgaggagattggcgctggtgaccagggccacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96803" stop="98786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97103" g_stop="97162" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98486" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="440" r_length="380" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709339" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97103" e_stop="97162"/>
          <exon e_start="98108" e_stop="98486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAA-CGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATG</genome_strand>
        <mrna_strand>TTTATAATCCTCTTTTTCTCTTTGTTCGCCGCTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCACACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTACACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACCGCCCCGAGGAGATTGGCGCTGGTGACCAGGGCCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205385" ref_strand="+" ref_description="SGN-E205385 [cLEC-28-A21]">
      <seq>tataatcctctttttctctttgttcgccgatgggtcctttactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcaaatcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgcaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcgaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtgcacggtcatctgaccaaacgcccccaggagattggtgctggtgaccaaggccacatgtttggctatgcaacagattagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96805" stop="98872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97105" g_stop="97162" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98572" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="523" r_length="465" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E205385" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97105" e_stop="97162"/>
          <exon e_start="98108" e_stop="98572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGT</genome_strand>
        <mrna_strand>TATAATCCTCTTTTTCTCTTTGTTCGCCGATGGGTCCTTTACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAAATCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGCAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCGAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTGCACGGTCATCTGACCAAACGCCCCCAGGAGATTGGTGCTGGTGACCAAGGCCACATGTTTGGCTATGCAACAGATTAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297381" ref_strand="+" ref_description="SGN-E297381 [cLEW-10-O3]">
      <seq>ataatcctctttttctttttgttcgccgccgggttcttcactttcctgtgtcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtcgactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttgtgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96806" stop="98789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97106" g_stop="97162" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98489" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="439" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E297381" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97106" e_stop="97162"/>
          <exon e_start="98108" e_stop="98489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTT</genome_strand>
        <mrna_strand>ATAATCCTCTTTTTCTTTTTGTTCGCCGCCGGGTTCTTCACTTTCCTGTGTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTCGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTGTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297358" ref_strand="+" ref_description="SGN-E297358 [cLEW-10-C3]">
      <seq>atcctctttagctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgtaggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96809" stop="98721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97162" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98421" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="368" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E297358" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97162"/>
          <exon e_start="98108" e_stop="98421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</genome_strand>
        <mrna_strand>ATCCTCTTTAGCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTAGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358897" ref_strand="+" ref_description="SGN-E358897 [cLHT-24-C8]">
      <seq>acctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96811" stop="98584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97110" g_stop="97162" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98284" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="230" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E358897" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97110" e_stop="97162"/>
          <exon e_start="98108" e_stop="98284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAAC</genome_strand>
        <mrna_strand>ACCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394522" ref_strand="+" ref_description="SGN-E394522 [TUS-14-B21]">
      <seq>ctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96812" stop="99048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97112" g_stop="97162" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98748" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="692" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E394522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97112" e_stop="97162"/>
          <exon e_start="98108" e_stop="98748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATG</genome_strand>
        <mrna_strand>CTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306326" ref_strand="+" ref_description="SGN-E306326 [cLEX-13-I24]">
      <seq>tctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96813" stop="98945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97113" g_stop="97162" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98645" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="588" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E306326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97113" e_stop="97162"/>
          <exon e_start="98108" e_stop="98645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGAC</genome_strand>
        <mrna_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212521" ref_strand="+" ref_description="SGN-E212521 [cLEC-74-E14]">
      <seq>tctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96813" stop="98944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97113" g_stop="97162" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98644" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="587" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E212521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97113" e_stop="97162"/>
          <exon e_start="98108" e_stop="98644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGA</genome_strand>
        <mrna_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724342" ref_strand="+" ref_description="SGN-E724342 [FC23DC08]">
      <seq>tctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcaaatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96813" stop="98863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97113" g_stop="97162" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98563" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="506" r_length="456" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E724342" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97113" e_stop="97162"/>
          <exon e_start="98108" e_stop="98563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCT</genome_strand>
        <mrna_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAAATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202368" ref_strand="+" ref_description="SGN-E202368 [cLEC-6-D22]">
      <seq>tctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcaatcacgtgcttgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96813" stop="98846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97113" g_stop="97162" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98546" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="489" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E202368" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97113" e_stop="97162"/>
          <exon e_start="98108" e_stop="98546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACT</genome_strand>
        <mrna_strand>TCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAATCACGTGCTTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298199" ref_strand="+" ref_description="SGN-E298199 [cLEW-9-M1]">
      <seq>tctctttgttccccggtgggttcttcactttcctgtttcttgaggtaattttaagtttagctagttgaatactagtctttttctgtttctttcatcgggttttgctgttttcttgctgggtgttttatgatagatctggggtttttgtgcaaaatttcttttggggtttttgaagtgatgaaagattgtgtttttatttggtttgtttaaggttggttgtgttttagcttgagtgttgggaacaggggagggaaggaacaggttcttgaatctggaaatgaactaatttttcctgttaacatgtctttccatgaaaattttgaaatgcttctgtattttcgctcttaaaaaaccctgctttatactgaaaactttgatgttctcaacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96819" stop="97809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97119" g_stop="97509" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E298199" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97119" e_stop="97509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGT</genome_strand>
        <mrna_strand>TCTCTTTGTTCCCCGGTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAAGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGGTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAACATGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTCGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355810" ref_strand="+" ref_description="SGN-E355810 [cLHT-12-D14]">
      <seq>ttgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacatgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96834" stop="98947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97134" g_stop="97162" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98647" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="569" r_length="540" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E355810" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97134" e_stop="97162"/>
          <exon e_start="98108" e_stop="98647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAA</genome_strand>
        <mrna_strand>TTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACATGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246651" ref_strand="+" ref_description="SGN-E246651 [cLEF-45-I11]">
      <seq>tgggttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96835" stop="98842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97135" g_stop="97162" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98542" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="463" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E246651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97135" e_stop="97162"/>
          <exon e_start="98108" e_stop="98542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</genome_strand>
        <mrna_strand>TGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253906" ref_strand="+" ref_description="SGN-E253906 [cLEG-28-K20]">
      <seq>ggttcttcactttcctgtttcttgaaactgcaaaatattttattcacctccgagtctgtgaacaagggtcacccagacaagctctgtgatcagatctctgattcaattcttgatgcctgacttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgcccgaatattggatttgtttctgatgatgttggtcttgatgctgctgaacgttatgcccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccaccggcatctgaccaaacgcccctaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96837" stop="98826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97137" g_stop="97162" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98526" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="445" r_length="419" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E253906" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97137" e_stop="97162"/>
          <exon e_start="98108" e_stop="98526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTC</genome_strand>
        <mrna_strand>GGTTCTTCACTTTCCTGTTTCTTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAAAATATTTTATTCACCTCCGAGTCTGTGAACAAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATTCAATTCTTGATGCCTGACTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCCGAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGCTGAACGTTATGCCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACCGGCATCTGACCAAACGCCCCTAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323380" ref_strand="+" ref_description="SGN-E323380 [cTOC-10-K1]">
      <seq>ttcttcactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96839" stop="98669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97139" g_stop="97162" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98369" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="286" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E323380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97139" e_stop="97162"/>
          <exon e_start="98108" e_stop="98369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCT</genome_strand>
        <mrna_strand>TTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246534" ref_strand="+" ref_description="SGN-E246534 [cLEF-45-G16]">
      <seq>cttcactttcctgtttcttgagaatggaaactgggttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96841" stop="98894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97141" g_stop="97162" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98594" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="509" r_length="487" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E246534" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97141" e_stop="97162"/>
          <exon e_start="98108" e_stop="98594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCC</genome_strand>
        <mrna_strand>CTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTGGGTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740380" ref_strand="+" ref_description="SGN-E740380 [LC21AG04]">
      <seq>cctgcagcatactttatactgtgccttcttttatatacttgaacttgtgtaattgattttatcttcttgtagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97747" stop="99221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98036" g_stop="98921" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="886" r_length="886" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E740380" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98036" e_stop="98921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCG</genome_strand>
        <mrna_strand>CCTGCAGCATACTTTATACTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736432" ref_strand="+" ref_description="SGN-E736432 [LC05DA04]">
      <seq>gctgcagcatactttatactgtgccttcttttatatacttgaacttgtgtaattgattttatcttcttgtagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97747" stop="99184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98036" g_stop="98884" g_length="849"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E736432" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98036" e_stop="98884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTA</genome_strand>
        <mrna_strand>GCTGCAGCATACTTTATACTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730471" ref_strand="+" ref_description="SGN-E730471 [LA24AH11]">
      <seq>cttgagaatggaaactttcttattcacctcctagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97801" stop="99160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98101" g_stop="98860" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E730471" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98101" e_stop="98860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGG</genome_strand>
        <mrna_strand>CTTG-AGAATGGAAACTTTCTTATTCACCTCCTAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727239" ref_strand="+" ref_description="SGN-E727239 [LA14AE08]">
      <seq>tataatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcaccctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccactcatcccagagaagtacccttgatgagaatactattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97805" stop="99098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98105" g_stop="98798" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E727239" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98105" e_stop="98798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCA-CCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTA-CCTTGATGAGAATACTATTTTC</genome_strand>
        <mrna_strand>TATAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCACTCATCCCAGAGAAGTACCCTTGATGAGAATACTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709898" ref_strand="+" ref_description="SGN-E709898 [FA53CD04]">
      <seq>cgttttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctgggcgattcgttattggtggacctcatggtgatgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="99152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98852" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="764" r_length="745" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709898" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGT</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGGCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698655" ref_strand="+" ref_description="SGN-E698655 [FA07AG02]">
      <seq>cccgttttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatacctattttcccacccttnacccatctggccgattccttattggtggacctcatggtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="99149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98849" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="766" r_length="745" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E698655" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATA-CTATTTT-CCA-CCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCT</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACCTATTTTCCCACCCTTNACCCATCTGGCCGATTCCTTATTGGTGGACCTCATGGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730956" ref_strand="+" ref_description="SGN-E730956 [LA25CH07]">
      <seq>cccataaaggaaactttcttattcacctccgagtctgtgaaccatggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattactgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaacaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccccccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97806" stop="99121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98821" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="719" r_length="714" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E730956" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATT</genome_strand>
        <mrna_strand>AAAGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACCATGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTACTGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAACAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCCCCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209745" ref_strand="+" ref_description="SGN-E209745 [cLEC-52-I20]">
      <seq>tcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="99025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98725" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="632" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E209745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGAT</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248948" ref_strand="+" ref_description="SGN-E248948 [cLEF-49-F8]">
      <seq>cactttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98596" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="508" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTG</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232803" ref_strand="+" ref_description="SGN-E232803 [cLED-8-N12]">
      <seq>tttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98594" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="503" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E232803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCC</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249372" ref_strand="+" ref_description="SGN-E249372 [cLEF-50-O4]">
      <seq>tgctgtttcttgagaatggaaactttcttattcacctcctagtgtgtgaacgagggtgacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98550" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="457" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249372" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAAC</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCTAGTGTGTGAACGAGGGTGACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209487" ref_strand="+" ref_description="SGN-E209487 [cLEC-54-C8]">
      <seq>tcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98547" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="454" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E209487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTA</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272387" ref_strand="+" ref_description="SGN-E272387 [cLEM-19-E2]">
      <seq>tcttgagaagtggaaactgtcttattcacctccttttctgtgaacgagggtcacccagaggagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacacatgagacccctgaattaatgcctctcagtcacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97836" stop="98838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98538" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="439" r_length="431" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E272387" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</genome_strand>
        <mrna_strand>AGTGGAAACTGTCTTATTCACCTCCTTTTCTGTGAACGAGGGTCACCCAGAGGAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACACATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265413" ref_strand="+" ref_description="SGN-E265413 [cLEI-9-I12]">
      <seq>ctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcagagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagtgccacatgtgtggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98538" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="443" r_length="431" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E265413" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAGAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGTGCCACATGTGTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303274" ref_strand="+" ref_description="SGN-E303274 [cLEX-5-P23]">
      <seq>actttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgttacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaatgtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtcctcggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98522" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="433" r_length="415" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E303274" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATG</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTTACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAATGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCTCGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233750" ref_strand="+" ref_description="SGN-E233750 [cLED-14-O13]">
      <seq>tttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccagaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98492" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="401" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E233750" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGC</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCAGAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240853" ref_strand="+" ref_description="SGN-E240853 [cLED-24-H14]">
      <seq>tttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98461" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="370" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E240853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGAT</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309409" ref_strand="+" ref_description="SGN-E309409 [cLEY-22-N7]">
      <seq>aggctttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcaggcagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98419" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="332" r_length="312" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E309409" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGC</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCAGGCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265287" ref_strand="+" ref_description="SGN-E265287 [cLEI-9-K4]">
      <seq>ctgtttcttgagaatggaaactttgttgttcaccttcgagtgtgcgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagatcttgatgcctgccttgagcaagattccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggactttggagagatcacaaccaaggctatagtagactatgagaagattgtgcgtgacacatgccgtaatattggattggtttctgatgatgtcggtctagatgctgacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98378" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="283" r_length="271" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E265287" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGC</genome_strand>
        <mrna_strand>AATGGAAACTTTGTTGTTCACCTTCGAGTGTGCGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGATCTTGATGCCTGCCTTGAGCAAGATTCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGACTTTGGAGAGATCACAACCAAGGCTATAGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTGGTTTCTGATGATGTCGGTCTAGATGCTGACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240844" ref_strand="+" ref_description="SGN-E240844 [cLED-24-D14]">
      <seq>tttcctgtttcttgagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97795" stop="98581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98108" g_stop="98281" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="190" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E240844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98108" e_stop="98281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCAC</genome_strand>
        <mrna_strand>AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248570" ref_strand="+" ref_description="SGN-E248570 [cLEF-59-P2]">
      <seq>aactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97814" stop="99019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98114" g_stop="98719" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98114" e_stop="98719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGA</genome_strand>
        <mrna_strand>AACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245709" ref_strand="+" ref_description="SGN-E245709 [cLEF-48-C24]">
      <seq>tttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97817" stop="98890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98117" g_stop="98590" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E245709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98117" e_stop="98590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTG</genome_strand>
        <mrna_strand>TTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215155" ref_strand="+" ref_description="SGN-E215155 [cLEC-78-N20]">
      <seq>gaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattanggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatncaaccagtcatcccagagaagtaccttgatgagaatactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97841" stop="99097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98141" g_stop="98797" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E215155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98141" e_stop="98797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTT</genome_strand>
        <mrna_strand>GAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTANGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATNCAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302228" ref_strand="+" ref_description="SGN-E302228 [cLEW-19-G20]">
      <seq>gagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97845" stop="98955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98145" g_stop="98655" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E302228" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98145" e_stop="98655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAG-ACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCA</genome_strand>
        <mrna_strand>GAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGAACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304598" ref_strand="+" ref_description="SGN-E304598 [cLEX-11-B14]">
      <seq>ccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97854" stop="98866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98154" g_stop="98566" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E304598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98154" e_stop="98566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</genome_strand>
        <mrna_strand>CCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709349" ref_strand="+" ref_description="SGN-E709349 [FA51CC02]">
      <seq>tcgacaacctctgtgatcacatctctgatgccgatcttgatgcctgccttgagcaagatcccgagagcaaagctgcatgtgaaacttgcaccaagaccaacttggccatggcctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgcccacggccatctgaccaaacgccccgaggagattggtgctggtgaccaaggccacatgtttgcctatgcaacagatgagacccctgaattattgcctctcagtcacgtgcttgcaactaaacttggtgcccgccttacagaagtccgcaagaatggccacctgcccctggctgacgcctgatggcaacacccaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97857" stop="98925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98155" g_stop="98625" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709349" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98155" e_stop="98625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGG-CACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTA</genome_strand>
        <mrna_strand>TCGACAACCTCTGTGATCACATCTCTGATGCCGATCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGCTGCATGTGAAACTTGCACCAAGACCAACTTGGCCATGGCCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGCCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAAGGCCACATGTTTGCCTATGCAACAGATGAGACCCCTGAATTATTGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGCCTTACAGAAGTCCGCAAGAATGGCCACCTGCCCCTGGCTGACGCCTGATGGCAACACCCAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267298" ref_strand="+" ref_description="SGN-E267298 [cLEI-17-C3]">
      <seq>gctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgagacacatgccgggtattggatttgactctgatgatgatggcttgatgctgacaactgaaggtccttgtttacattgagcagcaaagtcctgatattgctcaagtggcacggcatctgaccaaacgccctaggagattggtgctggtgaccagggccaatgtttggctatgcaacagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97862" stop="98805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98162" g_stop="98505" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267298" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98162" e_stop="98505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATG</genome_strand>
        <mrna_strand>GCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGAGACACATGCCG-GGTATTGGATTTGACTCTGATGATGATGG-CTTGATGCTGACAACTG-AAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAA-GTG-GCACGG-CATCTGACCAAACG-CCCTAGGAGATTGGTGCTGGTGACCAGGGCCA-ATGTTTGGCTATGCAACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247096" ref_strand="+" ref_description="SGN-E247096 [cLEF-41-J12]">
      <seq>agatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaagagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97873" stop="99093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98173" g_stop="98793" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E247096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98173" e_stop="98793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTA</genome_strand>
        <mrna_strand>AGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAAGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700130" ref_strand="+" ref_description="SGN-E700130 [FA12AH10]">
      <seq>gatctctgatgcagttcttgatgcctgccttgagcaagatcccgacagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttcccattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccaagagaagtaccttgatgagaatactattttccaccttaacccatctgggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggcgggcgggtgctttctcgggcaaaaacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97874" stop="99234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98174" g_stop="98934" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E700130" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98174" e_stop="98934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCC-AGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCT-GGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGG-TGG-TGGTGCTTTCTCGGGCAAAGACCCAA</genome_strand>
        <mrna_strand>GATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGACAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCCATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGCGGGCGGGTGCTTTCTCGGGCAAAAACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709160" ref_strand="+" ref_description="SGN-E709160 [FA42DE04]">
      <seq>cgctgtagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagcccgcaagaatggcacctgcgcctggttgaggcctgatggcacgacccaagttactgttgagtataccaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97881" stop="99112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98180" g_stop="98812" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709160" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98180" e_stop="98812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATC</genome_strand>
        <mrna_strand>CGCTGTAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGCCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCACGACCCAAGTTACTGTTGAGTATACCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331248" ref_strand="+" ref_description="SGN-E331248 [cTOD-6-B11]">
      <seq>ttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97888" stop="99004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98188" g_stop="98704" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E331248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98188" e_stop="98704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGA</genome_strand>
        <mrna_strand>TTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359113" ref_strand="+" ref_description="SGN-E359113 [cLHT-11-H6]">
      <seq>tgatgcctgccttgagcaatatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgacatcacaaccaaggctattgtaaactatgagaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcaccaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccaaggtcacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacatgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatcttcacccaacacgatgagaccgttaccaatgatgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97892" stop="99026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98192" g_stop="98726" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E359113" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98192" e_stop="98726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATT</genome_strand>
        <mrna_strand>TGATGCCTGCCTTGAGCAATATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGACATCACAACCAAGGCTATTGTAAACTATGAGAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCACCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAAGGTCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACATGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTTCACCCAACACGATGAGACCGTTACCAATGATGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702863" ref_strand="+" ref_description="SGN-E702863 [FA19DF06]">
      <seq>ccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagaccccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaaaagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97901" stop="99411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98201" g_stop="99111" g_length="911"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="912" r_length="912" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E702863" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98201" e_stop="99111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGA-CCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGA</genome_strand>
        <mrna_strand>CCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAAAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246184" ref_strand="+" ref_description="SGN-E246184 [cLEF-40-N21]">
      <seq>cttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97902" stop="98948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98202" g_stop="98648" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E246184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98202" e_stop="98648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAAT</genome_strand>
        <mrna_strand>CTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247848" ref_strand="+" ref_description="SGN-E247848 [cLEF-47-M3]">
      <seq>agatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97910" stop="99096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98210" g_stop="98796" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E247848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98210" e_stop="98796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTT</genome_strand>
        <mrna_strand>AGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709248" ref_strand="+" ref_description="SGN-E709248 [FA51AF01]">
      <seq>cgcctgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtaaatgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97914" stop="99317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98212" g_stop="99017" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709248" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98212" e_stop="99017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATC</genome_strand>
        <mrna_strand>CGCCTGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAAATGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331271" ref_strand="+" ref_description="SGN-E331271 [cTOD-6-L19]">
      <seq>cgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97916" stop="98949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98216" g_stop="98649" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E331271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98216" e_stop="98649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATG</genome_strand>
        <mrna_strand>CGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249076" ref_strand="+" ref_description="SGN-E249076 [cLEF-49-F5]">
      <seq>aaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaagtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattaaggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaagagcatgtcatcaaaccagtcaccccagagaagtaccttgatgagaatactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97923" stop="99096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98223" g_stop="98796" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249076" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98223" e_stop="98796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTT</genome_strand>
        <mrna_strand>AAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAAGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAAGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAAGAGCATGTCATCAAACCAGTCACCCCAGAGAAGTACCTTGATGAGAATACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702752" ref_strand="+" ref_description="SGN-E702752 [FA19CD07]">
      <seq>gtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcaaacctggaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97933" stop="99451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98233" g_stop="99151" g_length="919"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="919" r_length="919" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E702752" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98233" e_stop="99151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGAT</genome_strand>
        <mrna_strand>GTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAAACCTGGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300894" ref_strand="+" ref_description="SGN-E300894 [cLEW-8-H10]">
      <seq>ccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97945" stop="99032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98245" g_stop="98732" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E300894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98245" e_stop="98732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGC</genome_strand>
        <mrna_strand>CCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343140" ref_strand="+" ref_description="SGN-E343140 [cTOF-17-K8]">
      <seq>gaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97949" stop="99179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98249" g_stop="98879" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E343140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98249" e_stop="98879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGAC</genome_strand>
        <mrna_strand>GACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704614" ref_strand="+" ref_description="SGN-E704614 [FA24DB02]">
      <seq>cacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgaaccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97979" stop="99410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98279" g_stop="99110" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E704614" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98279" e_stop="99110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</genome_strand>
        <mrna_strand>CACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAACCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248903" ref_strand="+" ref_description="SGN-E248903 [cLEF-49-D13]">
      <seq>cacaaccaaagctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaagcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattaaggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97979" stop="99033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98279" g_stop="98733" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248903" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98279" e_stop="98733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCG</genome_strand>
        <mrna_strand>CACAACCAAAGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAAGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAAGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552418" ref_strand="+" ref_description="SGN-E552418 [cTSB-3-N21]">
      <seq>caaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaagtatcttatgccatcggtgtgcctgagccattgtctgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="97985" stop="99364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98285" g_stop="99064" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E552418" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98285" e_stop="99064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATT</genome_strand>
        <mrna_strand>CAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAAGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354715" ref_strand="+" ref_description="SGN-E354715 [cLHT-5-F8]">
      <seq>gaagattgtgcgtgtcacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggctatgcaacacatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacatgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98006" stop="99021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98306" g_stop="98721" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E354715" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98306" e_stop="98721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATG</genome_strand>
        <mrna_strand>GAAGATTGTGCGTGTCACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCAACACATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACATGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304860" ref_strand="+" ref_description="SGN-E304860 [cLEX-10-G11]">
      <seq>gattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98009" stop="98895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98309" g_stop="98595" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E304860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98309" e_stop="98595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCT</genome_strand>
        <mrna_strand>GATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366033" ref_strand="+" ref_description="SGN-E366033 [cLPT-15-A10]">
      <seq>tgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtacacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggtcacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98018" stop="99007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98318" g_stop="98707" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E366033" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98318" e_stop="98707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGAC</genome_strand>
        <mrna_strand>TGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTACACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248617" ref_strand="+" ref_description="SGN-E248617 [cLEF-58-M5]">
      <seq>gacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98019" stop="99203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98319" g_stop="98903" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98319" e_stop="98903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCAT</genome_strand>
        <mrna_strand>GACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248850" ref_strand="+" ref_description="SGN-E248850 [cLEF-49-M3]">
      <seq>acatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaagcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattaaggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaagagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98022" stop="99202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98322" g_stop="98902" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E248850" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98322" e_stop="98902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCA</genome_strand>
        <mrna_strand>ACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAAGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAAGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAAGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727144" ref_strand="+" ref_description="SGN-E727144 [LA13DD12]">
      <seq>ccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctcgaatgatgtccattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98027" stop="99462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98327" g_stop="99162" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E727144" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98327" e_stop="99162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACT</genome_strand>
        <mrna_strand>CCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTCGAATGATGTCCATTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704436" ref_strand="+" ref_description="SGN-E704436 [FA24BB08]">
      <seq>tggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98036" stop="99464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98336" g_stop="99164" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E704436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98336" e_stop="99164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTG</genome_strand>
        <mrna_strand>TGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729938" ref_strand="+" ref_description="SGN-E729938 [LA22CC06]">
      <seq>gatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaactgctgcctatggtcactttggacgtgatgaccccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98064" stop="99539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98364" g_stop="99239" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E729938" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98364" e_stop="99239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGAT</genome_strand>
        <mrna_strand>GATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTG-AAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729780" ref_strand="+" ref_description="SGN-E729780 [LA22AD01]">
      <seq>ctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98068" stop="99467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98368" g_stop="99167" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E729780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98368" e_stop="99167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGAT</genome_strand>
        <mrna_strand>CTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710276" ref_strand="+" ref_description="SGN-E710276 [FA54DG05]">
      <seq>caccgttaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggcggacctcatggtgatgctggtctcactggtcgtaaaatcctcatcgacaccttatggtggctggcgcgctcatggcggtggtgctttctcgggcaaacacccaaccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98074" stop="99239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98373" g_stop="98939" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E710276" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98373" e_stop="98939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACA-CTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAG</genome_strand>
        <mrna_strand>CACCGTTAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGCGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCCTCATCGACACCTTATGGTGGCTGGCGCGCTCATGGCGGTGGTGCTTTCTCGGGCAAACACCCAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704223" ref_strand="+" ref_description="SGN-E704223 [FA23CG07]">
      <seq>cttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaaagatccctgacagggaaattttgaagatcgttaaagagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaataaaagattcttgaaaactgctgcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98085" stop="99512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98385" g_stop="99212" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E704223" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98385" e_stop="99212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGG-AAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTAT</genome_strand>
        <mrna_strand>CTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAAGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAAAAGATTCTTGAAAACTGCTGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697653" ref_strand="+" ref_description="SGN-E697653 [FA03CH03]">
      <seq>cgagttgtcagcatcaagaccaacatcaaggtccttgtttactttgctgctcaatgtaaacaaggaccttgcagttgtcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatccgttaaggagaactttgacttcaaacctggaatgatgtccattaacttggatttgaagaggggtggcaataaaaaattcttgaaaactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98070" stop="99507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98400" g_stop="99207" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="887" r_length="809" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E697653" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98400" e_stop="99207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGAT-CGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTG</genome_strand>
        <mrna_strand>CAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCCGTTAAGGAGAACTTTGACTTCAAACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAAAAAATTCTTGAAAACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246949" ref_strand="+" ref_description="SGN-E246949 [cLEF-41-P20]">
      <seq>aaagtcctgatattgctcaaggcgtgcactggcttgtgcaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaagagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98104" stop="99224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98404" g_stop="98924" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E246949" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98404" e_stop="98924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTG-ACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGC</genome_strand>
        <mrna_strand>AAAGTCCTGATATTGCTCAAGGCGTGCACTGGCTTGTGCACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAAGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246327" ref_strand="+" ref_description="SGN-E246327 [cLEF-40-D20]">
      <seq>aaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98104" stop="99220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98404" g_stop="98920" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E246327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98404" e_stop="98920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTC</genome_strand>
        <mrna_strand>AAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214996" ref_strand="+" ref_description="SGN-E214996 [cLEC-78-A9]">
      <seq>ttgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagaccctggatgatgtccattaacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98116" stop="99467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98416" g_stop="99167" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E214996" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98416" e_stop="99167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGAT</genome_strand>
        <mrna_strand>TTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCCTGGATGATGTCCATTAACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209061" ref_strand="+" ref_description="SGN-E209061 [cLEC-38-H14]">
      <seq>ttgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactatttttcaccttaacccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98116" stop="99112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98416" g_stop="98812" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E209061" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98416" e_stop="98812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATC</genome_strand>
        <mrna_strand>TTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTTCACCTTAACCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701494" ref_strand="+" ref_description="SGN-E701494 [FA16AE08]">
      <seq>gctctaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98118" stop="99523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98418" g_stop="99223" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E701494" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98418" e_stop="99223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGG</genome_strand>
        <mrna_strand>GCTCTAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731373" ref_strand="+" ref_description="SGN-E731373 [LA26DG04]">
      <seq>ggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98133" stop="99549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98433" g_stop="99249" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E731373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98433" e_stop="99249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGG</genome_strand>
        <mrna_strand>GGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720700" ref_strand="+" ref_description="SGN-E720700 [FC11CC12]">
      <seq>agattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttcttttgtgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98158" stop="99627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98458" g_stop="99327" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="870" r_length="870" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E720700" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98458" e_stop="99327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGC</genome_strand>
        <mrna_strand>AGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTTGTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321611" ref_strand="+" ref_description="SGN-E321611 [cTOB-25-O16]">
      <seq>ttggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgtttaagagaactttgacttcagacctggaatgatgtccattaacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98161" stop="99466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98461" g_stop="99166" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E321611" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98461" e_stop="99166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGA</genome_strand>
        <mrna_strand>TTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTTAAGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704094" ref_strand="+" ref_description="SGN-E704094 [FA23BD04]">
      <seq>tggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagcccccaagactaataagtgcttgcctatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98162" stop="99609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98462" g_stop="99309" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E704094" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98462" e_stop="99309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAG-CCCCAAGACTAATAAGTGCTTGCCTATGTTT</genome_strand>
        <mrna_strand>TGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCCAAGACTAATAAGTGCTTGCCTATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263091" ref_strand="+" ref_description="SGN-E263091 [cLEG-59-F14]">
      <seq>tggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgnacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98168" stop="99466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98468" g_stop="99166" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E263091" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98468" e_stop="99166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCG-ACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGA</genome_strand>
        <mrna_strand>TGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGNACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263406" ref_strand="+" ref_description="SGN-E263406 [cLEG-62-J10]">
      <seq>tgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgtctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98171" stop="99316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98471" g_stop="99016" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E263406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98471" e_stop="99016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCAT</genome_strand>
        <mrna_strand>TGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGTCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703034" ref_strand="+" ref_description="SGN-E703034 [FA20BE06]">
      <seq>cagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaaccccaagactaataagtgcttgcctatngttttgntctttgttgtttgcttgtggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98175" stop="99635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98475" g_stop="99335" g_length="861"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E703034" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98475" e_stop="99335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCT</genome_strand>
        <mrna_strand>CAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAA-CCCCAAGACTAATAAGTGCTTGCCTATNGTTTTGNTCTTTGTTGTTTGCTTGTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303235" ref_strand="+" ref_description="SGN-E303235 [cLEX-5-O13]">
      <seq>cacatgtttggctatgcaacaaatgagacccctgcattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtgttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgctgagtatatcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactatttttcaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98181" stop="99206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98481" g_stop="98906" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E303235" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98481" e_stop="98906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGT</genome_strand>
        <mrna_strand>CACATGTTTGGCTATGCAACAAATGAGACCCCTGCATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTGTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGCTGAGTATATCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTTCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201557" ref_strand="+" ref_description="SGN-E201557 [cLEC-4-L18]">
      <seq>ttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98188" stop="99265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98488" g_stop="98965" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E201557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98488" e_stop="98965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGT</genome_strand>
        <mrna_strand>TTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710860" ref_strand="+" ref_description="SGN-E710860 [FA57AD11]">
      <seq>caacagatgacacccctgaattaatgcctctctttcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtacctagtggacttgctcgtagatgcatcgtgcaggtatcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98197" stop="99333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98497" g_stop="99033" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E710860" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98497" e_stop="99033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATG</genome_strand>
        <mrna_strand>CAACAGATGACACCCCTGAATTAATGCCTCTCTTTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTACCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249863" ref_strand="+" ref_description="SGN-E249863 [cLEF-57-D17]">
      <seq>aacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98198" stop="99410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98498" g_stop="99110" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98498" e_stop="99110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</genome_strand>
        <mrna_strand>AACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249861" ref_strand="+" ref_description="SGN-E249861 [cLEF-57-D13]">
      <seq>aacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98198" stop="99366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98498" g_stop="99066" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E249861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98498" e_stop="99066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCG</genome_strand>
        <mrna_strand>AACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709000" ref_strand="+" ref_description="SGN-E709000 [FA42BE09]">
      <seq>ccgtttctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacagctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaaaattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaaccccctcaattgggaaaagcccccagactaataagcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98225" stop="99598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98520" g_stop="99298" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E709000" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98520" e_stop="99298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCT</genome_strand>
        <mrna_strand>CCGTTTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACAGCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAAATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAACCCCCTCAATTGGGAAAAGCCCCCAGACTAATAAGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265396" ref_strand="+" ref_description="SGN-E265396 [cLEI-9-O5]">
      <seq>tctcagtcacgtgcttgcaactaaacttggtgcccgtctgacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaagagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttgggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaagtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98225" stop="99399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98525" g_stop="99099" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E265396" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98525" e_stop="99099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTT-GGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACA</genome_strand>
        <mrna_strand>TCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTGACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAAGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAAGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261245" ref_strand="+" ref_description="SGN-E261245 [cLEG-68-E3]">
      <seq>ggtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacaatgagaccgttaccaatgatgagattgcccgcaaccttaaggagcatgtcatcaaaccantcatcccacaaatataccttgatgacaatactattttccaccttaacccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98230" stop="99114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98529" g_stop="98814" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E261245" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98529" e_stop="98814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTG</genome_strand>
        <mrna_strand>GGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACAATGAGACCGTTACCAATGATGAGATTGCCCGCAACCTTAAGGAGCATGTCATCAAACCANTCATCCCACAAATATACCTTGATGACAATACTATTTTCCACCTTAACCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261791" ref_strand="+" ref_description="SGN-E261791 [cLEG-61-I7]">
      <seq>cgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctgnaatgatgtccattaacttggatttgaaagagggtggcaatagaagattcttgaaaactgctgcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98234" stop="99512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98534" g_stop="99212" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E261791" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98534" e_stop="99212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTAT</genome_strand>
        <mrna_strand>CGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGNAATGATGTCCATTAACTTGGATTTGAAAGAGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253684" ref_strand="+" ref_description="SGN-E253684 [cLEG-32-J9]">
      <seq>ttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagaagcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98239" stop="99410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98539" g_stop="99110" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E253684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98539" e_stop="99110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</genome_strand>
        <mrna_strand>TTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGAAGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256122" ref_strand="+" ref_description="SGN-E256122 [cLEG-37-P13]">
      <seq>ttgcaactaatcttggtgcccgtcttacagaaatccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagaagcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98239" stop="99376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98539" g_stop="99076" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E256122" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98539" e_stop="99076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTA</genome_strand>
        <mrna_strand>TTGCAACTAATCTTGGTGCCCGTCTTACAGAAATCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGAAGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262679" ref_strand="+" ref_description="SGN-E262679 [cLEG-63-I3]">
      <seq>ttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaangcangctgcaaagagtatcgtagctagtggacttgctcgtagaagcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98239" stop="99363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98539" g_stop="99063" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E262679" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98539" e_stop="99063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTAT</genome_strand>
        <mrna_strand>TTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAANGCANGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGAAGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261580" ref_strand="+" ref_description="SGN-E261580 [cLEG-57-L1]">
      <seq>ttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98239" stop="99264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98539" g_stop="98964" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E261580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98539" e_stop="98964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTG</genome_strand>
        <mrna_strand>TTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244821" ref_strand="+" ref_description="SGN-E244821 [cLEF-2-M13]">
      <seq>agaagtccgcaagaatggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaagagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98267" stop="99118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98567" g_stop="98818" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E244821" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98567" e_stop="98818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCG</genome_strand>
        <mrna_strand>AGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAAGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710197" ref_strand="+" ref_description="SGN-E710197 [FA54CD01]">
      <seq>atggcacctgcgcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagcccccaacactaataagtgcttgcctatgtttttgttctttgttgcttgccttgtggctttaaaatctcccccgtggttgcttgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98281" stop="99665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98581" g_stop="99365" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="787" r_length="787" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E710197" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98581" e_stop="99365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAG-CCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTG-CTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGT</genome_strand>
        <mrna_strand>ATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCCAACACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGCTTGCCTTGTGGCTTTAAAATCTCCCCCGTGGTTGCTTGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246375" ref_strand="+" ref_description="SGN-E246375 [cLEF-52-M18]">
      <seq>gagcctggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98290" stop="99410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98590" g_stop="99110" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E246375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98590" e_stop="99110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</genome_strand>
        <mrna_strand>GAGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313400" ref_strand="+" ref_description="SGN-E313400 [cTOA-13-O17]">
      <seq>tggttgaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98295" stop="99411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98595" g_stop="99111" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E313400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98595" e_stop="99111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGA</genome_strand>
        <mrna_strand>TGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277405" ref_strand="+" ref_description="SGN-E277405 [cLER-3-O24]">
      <seq>gaggcctgatggcaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgcttccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98300" stop="99261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98600" g_stop="98961" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E277405" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98600" e_stop="98961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACA</genome_strand>
        <mrna_strand>GAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGCTTCCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309207" ref_strand="+" ref_description="SGN-E309207 [cLEZ-12-E17]">
      <seq>tgatggtaagacccaagttactgttgagtatagcaatgacaatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98306" stop="99409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98606" g_stop="99109" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E309207" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98606" e_stop="99109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTT</genome_strand>
        <mrna_strand>TGATGGTAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715297" ref_strand="+" ref_description="SGN-E715297 [FB13DE08]">
      <seq>cgtatatggtgccatggttccaattagggtacacactgttcttatctccacccaacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggacatcttaggccttggaatattagggaaagaaaaagaaatattattatataaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98347" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98642" g_stop="99473" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="837" polyA_stop="854"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E715297" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98642" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>CGTATATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGACATCTTAGGCCTTGGAATATTAGGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711679" ref_strand="+" ref_description="SGN-E711679 [FB02CF11]">
      <seq>cccttgagttccattagggtacacactgttcttatctccaccccacacgatgagaccgttaccaatgatgagattgcccgcgaccttaaggagcatgtcatcaaaccagtcatcccagagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98353" stop="99750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98652" g_stop="99450" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E711679" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98652" e_stop="99450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTA</genome_strand>
        <mrna_strand>CCCTTGAGTTCCATTAGGGTACACACTGTTCTTATCTCCACCCCACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202423" ref_strand="+" ref_description="SGN-E202423 [cLEC-6-G19]">
      <seq>ttgcccgcgacctcatcattggtaacgtcaaaccagtcatcccatagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtaatcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaaggtgtcaagcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98450" stop="99564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98725" g_stop="99264" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E202423" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98725" e_stop="99264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCC</genome_strand>
        <mrna_strand>TTGCCCGCGACCTCATCATTGGTAACGTCAAACCAGTCATCCCATAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTAATCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGGTGTCAAGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306393" ref_strand="+" ref_description="SGN-E306393 [cLEX-13-P9]">
      <seq>tcaaaccagtcatcctatataagtaccttgatgagaatactattttgcaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaagagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatataagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98452" stop="99578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98752" g_stop="99278" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E306393" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98752" e_stop="99278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAG</genome_strand>
        <mrna_strand>TCAAACCAGTCATCCTATATAAGTACCTTGATGAGAATACTATTTTGCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAAGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATATAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577598" ref_strand="+" ref_description="SGN-E577598 [LE15AE08]">
      <seq>ttttttttttcaagtatataataatatttctttttctttccttaatattccaaggcctaagatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaagagaaaatacaaagacaaacaagcaaacacgggggagattctaaagccacaagcaaacaacaaagaacaaaaacataggcaagcacttattagtcttggggcttttcccacttgaggggcttgacaacttcccatgtgaaatcggggtcatcacgtccaaagtgaccataggcagcagttttcaagaatcttctattgccacccctcttcaaatccaagttaatggacatcattccaggtctgaagtcaaagttctccttaacgatcttcaaaatttccctgtcagggatctttccagtgccataggtgtcaacgaatacagacaatggctcaggcacaccgatggcataagatacctgcacgatgcatctacgagcaagtccactagctacgatactctttgcagcctgccttacaatgtatgcaccactcctgtcgaccttggttgggtctttgcccgagaaagcaccaccaccatgagcaccccaaccaccataagtgtcgatgatgattttacgaccagtgagaccagcatcaccatgaggtccaccaataacgaatcggccagatgggttaaggtggaaaatagtattctcatcaaggtacttctctgggatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99786" stop="98458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99492" g_stop="98758" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E577598" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99492" e_stop="98758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTTAAGGTGGAAAATAGTATTCTCATCAAGGTACTTCTCTGGGATGACTG</genome_strand>
        <mrna_strand>TTTTTTTTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTTAAGGTGGAAAATAGTATTCTCATCAAGGTACTTCTCTGGGATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542062" ref_strand="-" ref_description="SGN-E542062 [TUS-63-C21](-)">
      <seq>gggcccccctcgagtttttttttttttttttttgcactaattttcagtatataataatatttctttttctttccttaatattccaaggcctaagatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaagagaaaatacaaagacaaacaagcaaacacgggggagattctaaagccacaagcaaacaacaaagaacaaaaacataggcaagcacttattagtcttggggcttttcccacttgaggggcttgacaacttcccatgtgaaatcggggtcatcacgtccaaagtgaccataggcagcagttttcaagaatcttctattgccacccctcttcaaatccaagttaatggacatcattccaggtctgaagtcaaagttctccttaacgatcttcaaaatttccctgtcagggatctttccagtgccataggtgtcaacgaatacagacaatggctcaggcacaccgatggcataagatacctgcacgatgcatctacgagcaagtccactagctacgatactctttgcagcctgccttacaatgtatgcaccactcctgtcgaccttggttgggtctttgcccgagaaagcaccaccaccatgagcaccccaaccaccataagtgtcgatgatgattttacgaccagtgagaccagcatcaccatgaggtccaccaataacgaatcggccagatgggttaaggtggaaaatagtattctcatcaaggtacttctctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="111606" stop="98465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101159" g_stop="101146" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101145" i_stop="100511" i_length="635">
            <donor d_prob="0.765" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100510" g_stop="100493" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="32" r_length="18" r_score="0.444"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100492" i_stop="99495" i_length="998">
            <donor d_prob="0.305" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99494" g_stop="98765" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="761" r_length="729" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E542062" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542062" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101159" e_stop="101146"/>
          <exon e_start="100510" e_stop="100493"/>
          <exon e_start="99494" e_stop="98765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCTGTAAGTGGATCAGAATTTAAGTCTCCTTGAATATAGAAATCAACAAGTATTTTATAATTACTACTGTCTATGTGTGTGCATTTACACTTCAATCTTTTTCTCCTTTTCCTTTCATCGCAGCAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTATTTGACAAGGTGTTCACTACTTCCTATAGAATTATTGGTGAGTCAATCCAGGTCTGGGTCATGGTGAATTTTACTTTGAATTGACTAGGAATGCAATTTGCTTTTTACTATAGTTTCCCTTGTTTAAATTATCAATGACTGAGCAAATCAAATTCCGTCTCAAGTGGTATATTATTTCATATTAGTTTCAATAGTCAAGGGTTCAACGTTCAAATCCTATTTGACCTATGACATTGCCCCCAGCATTCTTCCATAGACTTTCCTTTAACCAACCGTGTTCGTATTTTCATCGGTCTAACTAATTTAGAGTTAGCAAGATAAAAATTTATTATAGCAACTCTTAAAAACAAGAGAACCTCATTTTTTGGGGGGCTGAATTCTGGAATCTGTAACTAAGGATCGAAGGTCTTTTAATATAACACAACAAGATCACAATCACTGTCGAATTCATTGTTGTAAACTTAAGCAACGCTTTTTTTTTCTTTCGTTTTTTCTCAATTGGACAGAAGAAGAAAAAAAAATTATCCCTTTGAGAAACCATTCCTTGTTGGTCTGGAATTACAGATTCAATAACTTGGATCATATATAGGAACGTAGTAAATTCTCATTAAAAATATTAGCTTTTCAAAATGTAGTTGTGGTGTATTGGGAACTGTTTTTTGTGAAAAGCCCCAAATTGTCATGCCTTAATCTTGATAGAAAGCAGAGTTAGTTGTCTGATTTGCGAAAGGGAGTGGTGGAAACAAACATTTTTGTCGGTAGATAAACCAAACTAACATGAAACACATGGTCCTTACAACACAGTAATTTCATTGTCAGCCAACGAATGATAACACAGAAAACGTCACAGCTGCTTGTTTTCCTAGTGCACATTTGCACTCATCATTTAGCATCTTTTTTTCAATAAAGAAAATCATTCCACAAATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTTAAGGTGGAAAATAGTATTCTCATCAAGGTACTTCTCTGGG</genome_strand>
        <mrna_strand>GGGCCCCCCTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTAATTTTC-AGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTTAAGGTGGAAAATAGTATTCTCATCAAGGTACTTCTCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201184" ref_strand="+" ref_description="SGN-E201184 [cLEC-10-E5]">
      <seq>agagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcacttttgacgtgatgaccccgatttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98468" stop="99546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98768" g_stop="99246" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E201184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98768" e_stop="99246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACAT</genome_strand>
        <mrna_strand>AGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTTGACGTGATGACCCCGATTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247838" ref_strand="+" ref_description="SGN-E247838 [cLEF-47-I21]">
      <seq>agagaagtaccttgatgagaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98468" stop="99545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98768" g_stop="99245" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E247838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98768" e_stop="99245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACA</genome_strand>
        <mrna_strand>AGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268536" ref_strand="+" ref_description="SGN-E268536 [cLEI-13-I20]">
      <seq>agaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98485" stop="99614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98785" g_stop="99314" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E268536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98785" e_stop="99314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTT</genome_strand>
        <mrna_strand>AGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267740" ref_strand="+" ref_description="SGN-E267740 [cLEI-12-H5]">
      <seq>agaatactattttccaccttaacccatctggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98485" stop="99611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98785" g_stop="99311" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E267740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98785" e_stop="99311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTT</genome_strand>
        <mrna_strand>AGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317834" ref_strand="+" ref_description="SGN-E317834 [cTOA-30-H23]">
      <seq>tttgcactaattttcaagtatataataatatttctttttctttccttaatattccaaggcctaagatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaagagaaaatacaaagacaaacaagcaaacacgggggagattctaaagccacaagcaaacaacaaagaacaaaaacataggcaagcacttattagtcttggggcttttcccacttgaggggcttgacaacttcccatgtgaaatcggggtcatcacgtccaaagtgaccataggcagcagttttcaagaatcttctattgccacccctcttcaaatccaagttaatggacatcattccaggtctgaagtcaaagttctccttaacgatcttcaaaatttccctgtcagggatctttccagtgccataggtgtcaacgaatacagacaatggctcaggcacaccgatggcataagatacctgcacgatgcatctacgagcaagtccactagctacgatactctttgcagcctgccttacaatgtatgcaccactcctgtcgaccttggttgggtctttgcccgagaaacaccaccaccatgagcaccccaaccaccataagtgtcgatgatgattttacgaccagtgagaccagcatcaccatgaggtccaccaataacgaatcggccagatgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99794" stop="98505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99496" g_stop="98805" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E317834" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99496" e_stop="98805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTT</genome_strand>
        <mrna_strand>TTTGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAA-CACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394521" ref_strand="+" ref_description="SGN-E394521 [TUS-14-B21](-)">
      <seq>ggccgattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttttttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatattttaggccttggaatattaaggaaagaaaaagaaatattattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98514" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98814" g_stop="99473" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="681"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E394521" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98814" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTTTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATTTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711398" ref_strand="+" ref_description="SGN-E711398 [FB01DF04]">
      <seq>ccctattcgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattcattatatacttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98516" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98815" g_stop="99494" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E711398" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98815" e_stop="99494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATT-ATTATATACTTGAAAATTAGTGCA</genome_strand>
        <mrna_strand>CCCTATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTCATTATATACTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714242" ref_strand="+" ref_description="SGN-E714242 [FB10DF04]">
      <seq>cgttattggtggacctcatggtgatgctggtctcactggtcgtaaaatcatcatcgacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98522" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98822" g_stop="99473" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="676"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E714242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98822" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>CGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246096" ref_strand="+" ref_description="SGN-E246096 [cLEF-40-K19]">
      <seq>ttttttttttttttttttcaagtatataataatatttctttttctttccttaatattccaaggcctaagatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaagagaaaatacaaagacaaacaagcaaacacgggggagattctaaagccacaagcaaacaacaaagaacaaaaacataggcaagcacttattagtcttggggcttttcccacttgaggggcttgacaacttcccatgtgaaatcggggtcatcacgtccaaagtgaccataggcagcagttttcaagaatcttctattgccacccctcttcaaatccaagttaatggacatcattccaggtctgaagtcaaagttctccttaacgatcttcaaaatttccctgtcagggatctttccagtgccataggtgtcaacgaatacagacaatggctcaggcacaccgatggcataagatacctgcacgatgcatctacgagcaagtccactagctacgatactctttgcagcctgccttacaatgtatgcaccactcctgtcgaccttggttgggtctttgcccgagaaagcaccaccaccatgagcaccccaaccaccataagtgtcgatgatgattttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99786" stop="98562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99565" g_stop="99555" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99554" i_stop="99490" i_length="65">
            <donor d_prob="0.664" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99489" g_stop="98862" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="639" r_length="628" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E246096" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99565" e_stop="99555"/>
          <exon e_start="99489" e_stop="98862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTCCTAGTGCACATTTGCACTCATCATTTAGCATCTTTTTTTCAATAAAGAAAATCATTCCACAAATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACG</genome_strand>
        <mrna_strand>TTTTTTTTTTT.................................................................TTTTTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711586" ref_strand="+" ref_description="SGN-E711586 [FB02BF06]">
      <seq>ccaataaaatcatcgananttatggnggatggggtgctcatgccctttagagctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaccagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98609" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98863" g_stop="99492" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E711586" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98863" e_stop="99492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATG-GTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTG</genome_strand>
        <mrna_strand>CCAATAAAATCATCGANANTTATGGNGGATGGGGTGCTCATGCCCTTTAGAGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAACCAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266722" ref_strand="+" ref_description="SGN-E266722 [cLEI-5-N4]">
      <seq>tttttttttatataataatacttctttttctttccttaatattccaaggcctaagatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaagagaaaatacaaagacaaacaatcaaacacgggggagattctaaagccacaagcaaacaacaaagaacaaaaacatacgcaagcacttattacttttggggcttttcccacttgaggggcttgacaacttgccatgtgaaatcggggtcatgacgtccaaagtgaccatatgcagcagttttcaagaatcttctattgccaccgctcttcaaatccaagttaatggacatcattccaggcctgaagtcaaagacctccttaacgatcttcacaatttgcctgccagggatctttccagtgccataggtgtcaacgaatacagacaatggctcaggcacaccgatggcataagatacctgcacgatgcatctacgagcaagtacactagctacgatactctttgcagcctgtcttacaatgtatgcaccactcctgtcgaccttggctgggtctttgcccgagaaagcaccaccaccatgagcacccgaaccaccataagtgtcgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99778" stop="98569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99486" g_stop="98869" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E266722" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99486" e_stop="98869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGA</genome_strand>
        <mrna_strand>TTTTTTTTTATATAATAATACTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAATCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATACGCAAGCACTTATTACTTTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTGCCATGTGAAATCGGGGTCATGACGTCCAAAGTGACCATATGCAGCAGTTTTCAAGAATCTTCTATTGCCACCGCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGCCTGAAGTCAAAGACCTCCTTAACGATCTTCACAATTTGCCTGCCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTACACTAGCTACGATACTCTTTGCAGCCTGTCTTACAATGTATGCACCACTCCTGTCGACCTTGGCTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCGAACCACCATAAGTGTCGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713209" ref_strand="+" ref_description="SGN-E713209 [FB08AB02]">
      <seq>agggcacacttatggtggttggggtgctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98578" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98874" g_stop="99473" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="620"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E713209" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98874" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCG-ACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>AGGGCACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304944" ref_strand="+" ref_description="SGN-E304944 [cLEX-10-J21]">
      <seq>ctcatggtggtggtgctttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttggctttgtattttctcttttgaccctttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98599" stop="99696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98899" g_stop="99396" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E304944" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98899" e_stop="99396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTT</genome_strand>
        <mrna_strand>CTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGGCTTTGTATTTTCTCTTTTGACCCTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297408" ref_strand="+" ref_description="SGN-E297408 [cLEW-14-L22]">
      <seq>tttctcgggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagaggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattgtgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98615" stop="99595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98915" g_stop="99295" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E297408" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98915" e_stop="99295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGT</genome_strand>
        <mrna_strand>TTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGAGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTGTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202485" ref_strand="-" ref_description="SGN-E202485 [cLEC-6-M22]">
      <seq>ggcaaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaaaaaaaaaaaaaaactcgagactagttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98622" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98922" g_stop="99473" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="585"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E202485" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202485" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98922" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300064" ref_strand="-" ref_description="SGN-E300064 [cLEW-11-M17]">
      <seq>caaagacccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatataaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98624" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98924" g_stop="99473" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="573"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E300064" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300064" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98924" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>CAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356166" ref_strand="+" ref_description="SGN-E356166 [cTOS-20-C12]">
      <seq>ccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaagggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtccagcccctccagtgggaaaagccccaagactaataagagcctgcccatggttttggtccttggtggttgcctgtggctttagaatctcccccgnggttgcctggttggccttggattttctcctttgaccccttattttggtattggcctggttccattgtggtggatggatatcttaaggcttggaatattaaggagaagaaaagaatattattatatacttgaaaattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98631" stop="99789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98931" g_stop="99496" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E356166" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98931" e_stop="99496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCATT</genome_strand>
        <mrna_strand>CCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAAGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCCAGCCCCTCCAGTGGGAAAAGCCCCAAGACTAATAAGAGCCTGCCCATGGTTTTGGTCCTTGGTGGTTGCCTGTGGCTTTAGAATCTCCCCCGNGGTTGCCTGGTTGGCCTTGGATTTTCTCCTTTGACCCCTTATTTTGGTATTGGCCTGGTTCCATTGTGGTGGATGGATATCTTAAGGCTTGGAATATTAAGGAGAAGAAAAG-AATATTATTATATACTTGAAAATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357058" ref_strand="+" ref_description="SGN-E357058 [cTOS-22-M20]">
      <seq>ccaaccaaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98631" stop="99789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98931" g_stop="99489" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E357058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98931" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>CCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264961" ref_strand="-" ref_description="SGN-E264961 [cLEI-10-L23]">
      <seq>caaggtcgacaggagtggtgcatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98636" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98936" g_stop="99473" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="566"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E264961" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264961" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98936" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>CAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713763" ref_strand="+" ref_description="SGN-E713763 [FB09CD02]">
      <seq>tgtatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98654" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98954" g_stop="99494" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E713763" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98954" e_stop="99494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCA</genome_strand>
        <mrna_strand>TGTATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713764" ref_strand="+" ref_description="SGN-E713764 [FB09CD03]">
      <seq>tgtatacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98654" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98954" g_stop="99494" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E713764" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98954" e_stop="99494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCA</genome_strand>
        <mrna_strand>TGTATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308619" ref_strand="+" ref_description="SGN-E308619 [cLEY-21-D6]">
      <seq>tacattgtaaggcaggctgcaaagagtatcgtagctagtggacttgctcgtggatgcatccagcaggtatcttatgccatcggtgtgcctgaaccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcggtaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggacactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98658" stop="99593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98958" g_stop="99293" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E308619" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98958" e_stop="99293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAA</genome_strand>
        <mrna_strand>TACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTGGATGCATCCAGCAGGTATCTTATGCCATCGGTGTGCCTGAACCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGGTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGACACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337404" ref_strand="+" ref_description="SGN-E337404 [cTOE-18-I6]">
      <seq>taaggcaggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98665" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98965" g_stop="99492" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E337404" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98965" e_stop="99492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTG</genome_strand>
        <mrna_strand>TAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712075" ref_strand="+" ref_description="SGN-E712075 [FB03DC08]">
      <seq>cgctggctgcaaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98669" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98968" g_stop="99492" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E712075" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98968" e_stop="99492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTG</genome_strand>
        <mrna_strand>CGCTGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714732" ref_strand="+" ref_description="SGN-E714732 [FB12BB06]">
      <seq>aaagagtatcgtagctagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98678" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98978" g_stop="99473" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="508"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E714732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98978" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>AAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397417" ref_strand="+" ref_description="SGN-E397417 [TUS-45-N19](-)">
      <seq>aagagtattgtaggtagtggacttggttgtagatgcattgtgcaggtattttatgccattggggtgcctgaggcattgtttgtatttgttgacacctatggcactggaaagattcctgacagggaaattttgaagattgttaaggagaaatttgaatttagacctggaatgatgttcattaaattggatttgaagaggggtggcaatagaagatttttgaaaaatggtgcctatggtcactttggacgtgatgaccccgattttacatgggaagttgtcaagcccctcaagtgggaaaagccccaagaataataagtgcttgcctatgtttttgttttttgttgtttggttgtgggtttagaattttccccgtgtttggttgtttgtttttgtatttttttttttgaccctttattttgttattgtcctgtttccattgtgttggatggatattttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaattagtgcatttgtggaatgattttttttattgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98679" stop="99827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98979" g_stop="99526" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="561"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E397417" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98979" e_stop="99526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCATTTGTGGAATGATTTTCTTTATTGAAAAAAAG</genome_strand>
        <mrna_strand>AAGAGTATTGTAGGTAGTGGACTTGGTTGTAGATGCATTGTGCAGGTATTTTATGCCATTGGGGTGCCTGAGGCATTGTTTGTATTTGTTGACACCTATGGCACTGGAAAGATTCCTGACAGGGAAATTTTGAAGATTGTTAAGGAGAAATTTGAATTTAGACCTGGAATGATGTTCATTAAATTGGATTTGAAGAGGGGTGGCAATAGAAGATTTTTGAAAAATGGTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTTACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGAATAATAAGTGCTTGCCTATGTTTTTGTTTTTTGTTGTTTGGTTGTGGGTTTAGAATTTTCCCCGTGTTTGGTTGTTTGTTTTTGTATTTTTTTTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATTTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCATTTGTGGAATGATTTTTTTTATTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356824" ref_strand="+" ref_description="SGN-E356824 [cTOS-22-A7]">
      <seq>agtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatggttttggtccttggtggttgcctgtggctttagaatctcccccggggttgcctggttggccttggaatttctcctttgaccccttaatttggtattggcccggttccattggggtggatggatatcttaaggcttggaatatttagggaagaaaaagaaatattattatattcttggaaatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98694" stop="99788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98994" g_stop="99473" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E356824" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98994" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>AGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGGTTTTGGTCCTTGGTGGTTGCCTGTGGCTTTAGAATCTCCCCCGGGGTTGCCTGGTTGGCCTTGGAATTTCTCCTTTGACCCCTTAATTTGGTATTGGCCCGGTTCCATTGGGGTGGATGGATATCTTAAGGCTTGGAATATTTAGGGAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711476" ref_strand="+" ref_description="SGN-E711476 [FB02AE01]">
      <seq>cctgtacttgctcgtagatgcatcgtgcaggtatcttatgcccccggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98696" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98994" g_stop="99473" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="521"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E711476" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98994" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>CCTGTACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCCCCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345987" ref_strand="+" ref_description="SGN-E345987 [cTOF-24-G21]">
      <seq>ttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttttctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98701" stop="99789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99001" g_stop="99489" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E345987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99001" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>TTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTTTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351351" ref_strand="+" ref_description="SGN-E351351 [cTOS-12-O11]">
      <seq>ttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaagggaaagaaaagaaatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98701" stop="99772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99001" g_stop="99472" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E351351" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99001" e_stop="99472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTAT</genome_strand>
        <mrna_strand>TTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGGAAAGAAAAGAAATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267329" ref_strand="+" ref_description="SGN-E267329 [cLEI-17-M23]">
      <seq>ttttttatataataatatttctttttctttccttaatattccaaggcctaagatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaagagaaaatacaaagacaaacaagcaaacacgggggagattctaaagccacaagcaaacaacaaagaacaaaaacataggcaagcacttattagtcttggggcttttcccacttgaggggcttgacaacttcccatgtgaaatcggggtcatcacgtccaaagtgaccataggcagcagttttcaagaatcttctattgccacccctcttcaaatccaagttaatggacatcattccaggtctgaagtcaaagttctccttaacgatcttcaaaatttccctgtcagggatctttccagtgccataggtgtcaacgaatacagacaatggctcaggcacaccgatggcataagatacctgcacgatgcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99778" stop="98708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99483" g_stop="99008" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E267329" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99483" e_stop="99008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTA</genome_strand>
        <mrna_strand>TTTTTTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221327" ref_strand="+" ref_description="SGN-E221327 [cLEL-22-O20](-)">
      <seq>atcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98715" stop="99789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99015" g_stop="99489" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="491"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E221327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99015" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>ATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306538" ref_strand="+" ref_description="SGN-E306538 [cLEX-13-L13]">
      <seq>tcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctaccccgtctttgcttgattgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttacgccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98716" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99016" g_stop="99492" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E306538" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99016" e_stop="99492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTG</genome_strand>
        <mrna_strand>TCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTACCCCGTCTTTGCTTGATTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTACGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278905" ref_strand="+" ref_description="SGN-E278905 [cLER-2-K23]">
      <seq>tttttttaattttcaagtatataataatatttctttttctttccttaatattccaaggcctaagatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaagagaaaatacaaagacaaacaagcaaacacgggggagattctaaagccacaagcaaacaacaaagaacaaaaacataggcaagcacttattagtcttggggcttttcccacttgaggggcttgacaacttcccatgtgaaatcggggtcatcacgtccaaagtgaccataggcagcagttttcaagaatcttctattgccacccctcttcaaatccaagttaatggacatcattccaggtctgaagtcaaagttctccttaacgatcttcaaaatttccctgtcagggatctttccagtgccataggtgtcaacgaatacagacaatggctcaggcacaccgatggcataagatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99789" stop="98722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99495" g_stop="99022" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E278905" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99495" e_stop="99022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCT</genome_strand>
        <mrna_strand>TTTTTTTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714532" ref_strand="+" ref_description="SGN-E714532 [FB11CH04]">
      <seq>gccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98750" stop="99789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99050" g_stop="99489" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="452"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E714532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99050" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>GCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220259" ref_strand="+" ref_description="SGN-E220259 [cLEL-12-D1](-)">
      <seq>ggcactgaaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttaaaaaggggtggcaataaaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98778" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99078" g_stop="99473" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="413"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E220259" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99078" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GGCACTGAAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTAAAAAGGGGTGGCAATAAAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228967" ref_strand="+" ref_description="SGN-E228967 [cLEL-29-H24](-)">
      <seq>gaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98802" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99102" g_stop="99473" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="399"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E228967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99102" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221224" ref_strand="+" ref_description="SGN-E221224 [cLEL-22-O20](-)">
      <seq>aattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaataaaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98804" stop="99789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99104" g_stop="99489" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="402"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E221224" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99104" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>AATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAAAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222342" ref_strand="+" ref_description="SGN-E222342 [cLEL-16-C20](-)">
      <seq>gaactttgacttcagacctggaatgatgtccattaacttggatttgaaaaggggtggcaatagaagattcttgaaaactgcttgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98825" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99125" g_stop="99473" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="367"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E222342" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99125" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGC-TGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAAAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234538" ref_strand="+" ref_description="SGN-E234538 [cLEL-6-I11](-)">
      <seq>ggcaccagctggaatgatgtccattaacttgtatttgaagaggggtggcaatagaagattcttgaaaactcctgcctatggtcactttggacgtgatatccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgctcgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98840" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99132" g_stop="99473" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="361"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E234538" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99132" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GGCACCAG--CTGGAATGATGTCCATTAACTTGTATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTCCTGCCTATGGTCACTTTGGACGTGATATCCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTCGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235210" ref_strand="+" ref_description="SGN-E235210 [cLEL-6-I11](-)">
      <seq>ggcaccagctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98840" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99132" g_stop="99473" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="361"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E235210" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99132" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>GGCACCAG--CTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322158" ref_strand="-" ref_description="SGN-E322158 [cTOB-24-G22]">
      <seq>ccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaattaaaaaaaaaaaaaaaaaactcgaaactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98854" stop="99789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99154" g_stop="99489" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="337" polyA_stop="354"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E322158" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322158" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99154" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>CCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220165" ref_strand="+" ref_description="SGN-E220165 [cLEL-12-D1](-)">
      <seq>ttgaagaggggtggcaatagaagattcttgaaaaactgctgcctatggtcactttggacgtgatgcccccaatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98868" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99168" g_stop="99473" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="308" polyA_stop="324"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E220165" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99168" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAA-CTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>TTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAAACTGCTGCCTATGGTCACTTTGGACGTGATGCCCCCAATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309693" ref_strand="+" ref_description="SGN-E309693 [cLEY-26-O13]">
      <seq>gattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98890" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99190" g_stop="99487" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E309693" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99190" e_stop="99487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAAT</genome_strand>
        <mrna_strand>GATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353649" ref_strand="+" ref_description="SGN-E353649 [cTOS-10-M8]">
      <seq>aaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattattatatacttgaaaannaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98898" stop="99786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99198" g_stop="99489" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="317"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E353649" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99198" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>AAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222432" ref_strand="+" ref_description="SGN-E222432 [cLEL-16-C10](-)">
      <seq>cctatgtttttgttctttgttgtttgcttgtggctttagaatctcccccgtgtttgcttgtttgtctttgtattttctcttttgaccctttattttgttattgtcctgtttccattgtgttggatggatatcttaggccttggaatattaaggaaagaaaaagaaatattcttacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99001" stop="99778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99301" g_stop="99473" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="174" polyA_stop="190"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E222432" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99301" e_stop="99473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATT</genome_strand>
        <mrna_strand>CCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542050" ref_strand="+" ref_description="SGN-E542050 [TUS-63-C14](-)">
      <seq>tatgcatcatgggcttatgcaatagcacaggtggcaattgaaattccgtatcttttagctcaagcactttcatttactgtcatcacctattcgatgattggatattattggtcggcccacaaggttttgtggtacttctattcgatgttctgcacattgttgtacttcacatacttgggaatgatgcttgtttcattgacaccaaacttgccagtagctgcaattctccagtcatccttttacacaatgttcaacctctttgccggattcttgataccaaaagctcaaattccaaaatggtggatctggttctattatctagtacctacatcgtggacgttgaatgggatgcttacttcacaatatggagatgttgatacagagattactgtgtttggagataagaaatcagtagcagcctttattagggactattttggatttcaccacaatcaattacctattgtaggtgttgttttgattgcataccccttagtttttgccactttatttgcatttttcattgggaggttgaacttccaaagaaggtgatgctgcaacttattcatttgttgtttatagaaacttttgatatattatccaaattaaatacttcccctcctccttttgtacattagactggtgagattttattggtaaataaaaaagacaaaccagtgtgttacatcatttaatatgaaggaaatatgaaaaaagaaaaatacaattattgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="101702" stop="49834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101402" g_stop="101373" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101372" i_stop="101239" i_length="134">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101238" g_stop="100984" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="285" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100983" i_stop="100864" i_length="120">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100863" g_stop="100418" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="732" r_length="447" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100417" i_stop="99914" i_length="504">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99913" g_stop="99899" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="747" r_length="15" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E542050" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101402" e_stop="101373"/>
          <exon e_start="101238" e_stop="100984"/>
          <exon e_start="100863" e_stop="100418"/>
          <exon e_start="99913" e_stop="99899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCATCATGGGCTTATGCATTAGCACAGGTTAGATATAAGGCTTTCAATCTTGGCATGTTGACTTGTTAAGACTAATGGGGGATTCAGTAACTCCATATCTTACACTTGTCTTCAATGGTTCACTGTTTCATATTTGAGTCTTGAGTACCTTGATTTTGTAGGTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCTGTAAGTGGATCAGAATTTAAGTCTCCTTGAATATAGAAATCAACAAGTATTTTATAATTACTACTGTCTATGTGTGTGCATTTACACTTCAATCTTTTTCTCCTTTTCCTTTCATCGCAGCAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAA-CAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTATTTGACAAGGTGTTCACTACTTCCTATAGAATTATTGGTGAGTCAATCCAGGTCTGGGTCATGGTGAATTTTACTTTGAATTGACTAGGAATGCAATTTGCTTTTTACTATAGTTTCCCTTGTTTAAATTATCAATGACTGAGCAAATCAAATTCCGTCTCAAGTGGTATATTATTTCATATTAGTTTCAATAGTCAAGGGTTCAACGTTCAAATCCTATTTGACCTATGACATTGCCCCCAGCATTCTTCCATAGACTTTCCTTTAACCAACCGTGTTCGTATTTTCATCGGTCTAACTAATTTAGAGTTAGCAAGATAAAAATTTATTATAGCAACTCTTAAAAACAAGAGAACCTCATTTTTTGGGGGGCTGAATTCTGGAATCTGTAACTAAGGATCGAAGGTCTTTTAATATAACACAACAAGATCACAATCACTGTCGAATTCATTGTTGTAAACTTAAGCAACGCTTTTTTTTTCTTTCGTTTTTTCTCAATTGGACAGAAGAAGAAAAAAAAA</genome_strand>
        <mrna_strand>TATGCATCATGGGCTTATGCAATAGCACAG......................................................................................................................................GTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCT........................................................................................................................CAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACCAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548651" ref_strand="+" ref_description="SGN-E548651 [TUS-63-C18](-)">
      <seq>attgttgtacttcacatacttgggaatgatgcttgtttcattgacaccaaacttgccagtagctgcaattctccagtcatccttttacacaatgttcaacctctttgccggattcttgataccaaaagctcaaattccaaaatggtggatctggttctattatctagtacctacatcgtggacgttgaatgggatgcttacttcacaatatggagatgttgatacagagattactgtgtttggagataagaaatcagtagcagcctttattagggactattttggatttcaccacaatcaattacctattgtaggtgttgttttgattgcataccccttagtttttgccactttatttgcatttttcattgggaggttgaacttccaaagaaggtgatgctgcaacttattcatttgttgtttatagaaacttttgatatattatccaaattaaatacttcccctcctccttttgtacattagactggtgagattttattggtaaataaaaaagacaaacagtgtgttacatcatttaatatgaaggaaatatgaaaaaagaaaaatacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="101413" stop="100120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101113" g_stop="100984" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100983" i_stop="100864" i_length="120">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100863" g_stop="100420" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="574" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E548651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101113" e_stop="100984"/>
          <exon e_start="100863" e_stop="100420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCTGTAAGTGGATCAGAATTTAAGTCTCCTTGAATATAGAAATCAACAAGTATTTTATAATTACTACTGTCTATGTGTGTGCATTTACACTTCAATCTTTTTCTCCTTTTCCTTTCATCGCAGCAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTA</genome_strand>
        <mrna_strand>ATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCT........................................................................................................................CAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317441" ref_strand="+" ref_description="SGN-E317441 [cTOA-28-N7]">
      <seq>gggacaattcaagacttgcttctggaagcaatactggtcctattggaggagtccttcatacaatttgatgcgctctctgcacatgctttttgcttccgttgtttttggattgcttttctggaacaagggaaagaaactagatgaccagcagagtgtcttcagtgtatttggttctatgttcactgcagtaatcttctgtggcataaataattcatcttcagttttaccatatgtgaccacggagcgatcagtcctataccgggaaagatttgctggaatgtatgcatcatgggcttatgcattagcacaggtggcaattgaaattccgtatcttttagctcaagcactttcatttactgtcatcacctattcgatgattggatattattggtcggcccacaaggttttgtggtacttctattcgatgttctgcacattgttgtacttcacatacttggggaatgatgcttgtttcattgacaccaaacttgccagtagctgcaattctccagtcatccttttacacaatgttcaaccctcttgccggattcttgataccnaaagctcnaattcaaaatggtggatctggntctattatctagtacctacatcgtggacgttgaatgggatgcttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="102414" stop="100491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102114" g_stop="101977" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101976" i_stop="101545" i_length="432">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101544" g_stop="101373" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="310" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101372" i_stop="101239" i_length="134">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101238" g_stop="100984" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="566" r_length="256" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100983" i_stop="100864" i_length="120">
            <donor d_prob="0.879" d_score="0.92"/>
            <acceptor a_prob="0.812" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100863" g_stop="100791" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="638" r_length="72" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E317441" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102114" e_stop="101977"/>
          <exon e_start="101544" e_stop="101373"/>
          <exon e_start="101238" e_stop="100984"/>
          <exon e_start="100863" e_stop="100791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGGATTGCTTTTCTGGAACAAGGGAAAGAAACTGTAAGACAATAAAATACTAATCAACCAAAGCTCAATTATCTTATCGACTACATGCTTCATTATGCCGTGGGAATTGAAACTTTCTACATCCTGAATAACATGTTTTTGCAATAGTGATGCTTAATTGAGTGGTAGGCATGATCCAGTTGATAAGGGAATTAGGTTGTCTGATCCTATAATTTCTTTTCCTGTTTGGTTTATTAACTTTTTTAAAAGTGGCTTTATCTTTTCTTTGTTGACATCACCCACACTGTTAAAACAGAACTCTGGAGTTCCATTTTTGGCGTGTGAAAGTTGATGCAGCAGAACTGAAGTTCTCCATCGATGATAATGGACTTAGTTATGCATGCATTGTATGTATATGCTATTTAGTTGAACAACTTAAATATTTTCTTATACTGCCTTTTTGTTTTTCTTCGTCCTTTTTGACAGAGATGACCAGCAGAGTGTCTTCAGTGTATTTGGTTCTATGTTCACTGCAGTAATCTTCTGTGGCATAAATAATTCATCTTCAGTTTTACCATATGTGACCACGGAGCGATCAGTCCTATACCGGGAAAGATTTGCTGGAATGTATGCATCATGGGCTTATGCATTAGCACAGGTTAGATATAAGGCTTTCAATCTTGGCATGTTGACTTGTTAAGACTAATGGGGGATTCAGTAACTCCATATCTTACACTTGTCTTCAATGGTTCACTGTTTCATATTTGAGTCTTGAGTACCTTGATTTTGTAGGTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTT-GGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCTGTAAGTGGATCAGAATTTAAGTCTCCTTGAATATAGAAATCAACAAGTATTTTATAATTACTACTGTCTATGTGTGTGCATTTACACTTCAATCTTTTTCTCCTTTTCCTTTCATCGCAGCAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTT</genome_strand>
        <mrna_strand>GGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGGATTGCTTTTCTGGAACAAGGGAAAGAAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACCAGCAGAGTGTCTTCAGTGTATTTGGTTCTATGTTCACTGCAGTAATCTTCTGTGGCATAAATAATTCATCTTCAGTTTTACCATATGTGACCACGGAGCGATCAGTCCTATACCGGGAAAGATTTGCTGGAATGTATGCATCATGGGCTTATGCATTAGCACAG......................................................................................................................................GTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCCTCTTGCCGGATTCTTGATACCNAAAGCT........................................................................................................................CNAATT-CAAAATGGTGGATCTGGNTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537712" ref_strand="+" ref_description="SGN-E537712 [TUS-56-H7]">
      <seq>ttctgcttggctacgacttcatcctcagattgattccagaacgaaatatgagtttgtgaaagaagtcctcgagaccattgagctagatggtataaaagacacgttggttggtatgccgggtgttagtgggctttcaacagaacaacgtaaacggctgacaatcgctgtggagcttgttgcaaatccctcaattatctttatggatgaacccacaacagggttggacgcaaggtcagctgcaattgtcatgcgggctgtgaaaaatgttgctgatacaggaagaacaatagtttgtaccatccaccaaccaagcattgacatatttgaagcatttgatgagctgattctattgaaaagtggtgggcgcatgatctactggggaccactcggacgaaattcttgtaaaatgatcgaatattttgagggtatctctggtgtgcctaaaataaagaacaactacaatccagcaacatggatgttagaggttacatcaacatctagtgaagctgagaccagcatagacttcgctgaagtatataagaattctgctctacacaaaaataacgaagagcttgtgaaaaaactgactttcccaccagctggttcaaaagatttgcatttccccacccaattttcacagaatggctggggacaattcaagacttgcttctggaagcaatactggtcctattggaggagtccttcatacaatttgatgcgctctctgcacatgctttttgcttccgttgtttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="103545" stop="101707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103245" g_stop="103197" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103098" i_length="99">
            <donor d_prob="0.353" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103097" g_stop="102807" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="340" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102806" i_stop="102649" i_length="158">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102648" g_stop="102565" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="424" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102564" i_stop="102467" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102466" g_stop="102333" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="558" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102332" i_stop="102205" i_length="128">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102204" g_stop="102007" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="756" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E537712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103245" e_stop="103197"/>
          <exon e_start="103097" e_stop="102807"/>
          <exon e_start="102648" e_stop="102565"/>
          <exon e_start="102466" e_stop="102333"/>
          <exon e_start="102204" e_stop="102007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATATGTACGAGCTTAATAGCATAAAGTTTGAATTGGTGTTTCTTTCATGAACATCATCCCTTCTGGCGATATCTATATTTGAACTGATGGGGCACTTGTACAGGAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAGGTAAGATGTATGTGAGGAGCAATTTTGTACTAAGTAATGCAGAAATCTTGAAGTAAAAGTAAAGACATCTACTTAGAAGTATCTTTCAGTTTGTGTAACTACACATCCTTCATGGATATCATCAAAAAGTTATTTGTCTGAAATTTGCTCTTTTGCAGCTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAGGTGCGCTAATTTCCCTTTTTATTAATGTTGCAGCAAGCTAGTAACTAGAGCTTCTTTGCATAGTAGCTGAGAGTGCTGTTTTTTCTCCGATTTGACAGGGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAAGTTAGTCATAGCTTTTCACCTCATCTAGTTTTGCGTTAGTTTTAAAATGCATCTTACACATTGTGTCACTTAAAGCACATTTTGCTAGTAACCAATGCATGATTCCTTTTGGTTTACACTTCCTGTAGAAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGG</genome_strand>
        <mrna_strand>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATAT...................................................................................................GAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAG..............................................................................................................................................................CTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAG..................................................................................................GGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAA................................................................................................................................AAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537719" ref_strand="+" ref_description="SGN-E537719 [TUS-56-H11]">
      <seq>ttctgcttggctacgacttcatcctcagattgattccagaacgaaatatgagtttgtgaaagaagtcctcgagaccattgagctagatggtataaaagacacgttggttggtatgccgggtgttagtgggctttcaacagaacaacgtaaacggctgacaatcgctgtggagcttgttgcaaatccctcaattatctttatggatgaacccacaacagggttggacgcaaggtcagctgcaattgtcatgcgggctgtgaaaaatgttgctgatacaggaagaacaatagtttgtaccatccaccaaccaagcattgacatatttgaagcatttgatgagctgattctattgaaaagtggtgggcgcatgatctactggggaccactcggacgaaattcttgtaaaatgatcgaatattttgagggtatctctggtgtgcctaaaataaagaacaactacaatccagcaacatggatgttagaggttacatcaacatctagtgaagctgagaccagcatagacttcgctgaagtatataagaattctgctctacacaaaaataacgaagagcttgtgaaaaaactgactttcccaccagctggttcaaaagatttgcatttccccacccaattttcacagaatggctggggacaattcaagacttgcttctggaagcaatactggtcctattggaggagtccttcatacaatttgatgcgctctctgcacatgctttttgcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="103545" stop="101718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103245" g_stop="103197" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103098" i_length="99">
            <donor d_prob="0.353" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103097" g_stop="102807" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="340" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102806" i_stop="102649" i_length="158">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102648" g_stop="102565" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="424" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102564" i_stop="102467" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102466" g_stop="102333" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="558" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102332" i_stop="102205" i_length="128">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102204" g_stop="102018" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="745" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E537719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103245" e_stop="103197"/>
          <exon e_start="103097" e_stop="102807"/>
          <exon e_start="102648" e_stop="102565"/>
          <exon e_start="102466" e_stop="102333"/>
          <exon e_start="102204" e_stop="102018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATATGTACGAGCTTAATAGCATAAAGTTTGAATTGGTGTTTCTTTCATGAACATCATCCCTTCTGGCGATATCTATATTTGAACTGATGGGGCACTTGTACAGGAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAGGTAAGATGTATGTGAGGAGCAATTTTGTACTAAGTAATGCAGAAATCTTGAAGTAAAAGTAAAGACATCTACTTAGAAGTATCTTTCAGTTTGTGTAACTACACATCCTTCATGGATATCATCAAAAAGTTATTTGTCTGAAATTTGCTCTTTTGCAGCTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAGGTGCGCTAATTTCCCTTTTTATTAATGTTGCAGCAAGCTAGTAACTAGAGCTTCTTTGCATAGTAGCTGAGAGTGCTGTTTTTTCTCCGATTTGACAGGGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAAGTTAGTCATAGCTTTTCACCTCATCTAGTTTTGCGTTAGTTTTAAAATGCATCTTACACATTGTGTCACTTAAAGCACATTTTGCTAGTAACCAATGCATGATTCCTTTTGGTTTACACTTCCTGTAGAAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCC</genome_strand>
        <mrna_strand>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATAT...................................................................................................GAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAG..............................................................................................................................................................CTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAG..................................................................................................GGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAA................................................................................................................................AAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266730" ref_strand="+" ref_description="SGN-E266730 [cLEI-7-A13]">
      <seq>tctgcttggctacgacttcatcctcagattgattccagaacgaaatatgagtttgtgaaagaagtcctcgagaccattgagctagatggtataaaagacacgttggttggtatgccgggtgttagtgggctttcaacagaacaacgtaaacggctgacaatcgctgtggagcttgttgcaaatccctcaattatctttatggatgaacccacaacagggttggacgcaaggtcagctgcaattgtcatgcgggctgtgaaaaatgttgctgatacaggaagaacaatagtttgtaccatccaccaaccaagcattgacatatttgaagcatttgatgagctgattctattgaaaagtggtgggcgcatgatctactggggaccactcggacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="103544" stop="102294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103244" g_stop="103197" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103098" i_length="99">
            <donor d_prob="0.353" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103097" g_stop="102807" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="339" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102806" i_stop="102649" i_length="158">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102648" g_stop="102594" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="394" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E266730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103244" e_stop="103197"/>
          <exon e_start="103097" e_stop="102807"/>
          <exon e_start="102648" e_stop="102594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATATGTACGAGCTTAATAGCATAAAGTTTGAATTGGTGTTTCTTTCATGAACATCATCCCTTCTGGCGATATCTATATTTGAACTGATGGGGCACTTGTACAGGAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAGGTAAGATGTATGTGAGGAGCAATTTTGTACTAAGTAATGCAGAAATCTTGAAGTAAAAGTAAAGACATCTACTTAGAAGTATCTTTCAGTTTGTGTAACTACACATCCTTCATGGATATCATCAAAAAGTTATTTGTCTGAAATTTGCTCTTTTGCAGCTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAA</genome_strand>
        <mrna_strand>TCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATAT...................................................................................................GAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAG..............................................................................................................................................................CTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314298" ref_strand="+" ref_description="SGN-E314298 [cTOA-21-C2]">
      <seq>tgacttcctccaggaggttacgtcgaaaaaggatcaagcacagtattggcatgaaactaaagaaacatataaatttctgtcagttgatacattatcaagaaagtttaaggaatctccatacaggaaaaagctgaatgatgaactttctgttgcatatgataagtccaggtgtcataaaaattctataacctttcgtgactattcacttcctaaatgggaactctttcgagcttgtatgtcaagagaattccttctgatgaaaaggaattcttttatctacatattcaaaactgttcagcttgtcatcattgcattcataactatgaccgtatttttgagaactcggatgcatactgatcttgtacatgcaaattattatttgggagctctgttttttgctctcatcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="106617" stop="105377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106317" g_stop="106302" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106301" i_stop="106224" i_length="78">
            <donor d_prob="0.668" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106223" g_stop="105942" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="298" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105941" i_stop="105792" i_length="150">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105791" g_stop="105677" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="413" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E314298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106317" e_stop="106302"/>
          <exon e_start="106223" e_stop="105942"/>
          <exon e_start="105791" e_stop="105677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCCTCCAGGAGGCAAGTCCATAGTAGTTAAATGGTTCGTTCATCTCTATCTATCAATTAGAAGCTCATAAATTCTGTTCTTTTTTTCAGGTTACGTCGAAAAAGGATCAAGCACAGTATTGGCATGAAACTAAAGAAACATATAAATTTCTGTCAGTTGATACATTATCAAGAAAGTTTAAGGAATCTCCATACAGGAAAAAGCTGAATGATGAACTTTCTGTTGCATATGATAAGTCCAGGTGTCATAAAAATTCTATAACCTTTCGTGACTATTCACTTCCTAAATGGGAACTCTTTCGAGCTTGTATGTCAAGAGAATTCCTTCTGATGAAAAGGAATTCTTTTATCTACATATTCAAAACTGTTCAGGTCAGTGACCAGTCATTCTTTTTTATTATGGTAGTTCAACCTACAAAATATTGTAATACTCATTCAAATTATCCAAAGTAACTATAGAAGTCACATTTTCTTTATTGAGATTTCTCACAACTTATTGCAATTTATGCTTCTATTATGCAGCTTGTCATCATTGCATTCATAACTATGACCGTATTTTTGAGAACTCGGATGCATACTGATCTTGTACATGCAAATTATTATTTGGGAGCTCTGTTTTTTGCTCTCATCATTCTTC</genome_strand>
        <mrna_strand>TGACTTCCTCCAGGAG..............................................................................GTTACGTCGAAAAAGGATCAAGCACAGTATTGGCATGAAACTAAAGAAACATATAAATTTCTGTCAGTTGATACATTATCAAGAAAGTTTAAGGAATCTCCATACAGGAAAAAGCTGAATGATGAACTTTCTGTTGCATATGATAAGTCCAGGTGTCATAAAAATTCTATAACCTTTCGTGACTATTCACTTCCTAAATGGGAACTCTTTCGAGCTTGTATGTCAAGAGAATTCCTTCTGATGAAAAGGAATTCTTTTATCTACATATTCAAAACTGTTCAG......................................................................................................................................................CTTGTCATCATTGCATTCATAACTATGACCGTATTTTTGAGAACTCGGATGCATACTGATCTTGTACATGCAAATTATTATTTGGGAGCTCTGTTTTTTGCTCTCATCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542052" ref_strand="+" ref_description="SGN-E542052 [TUS-63-C14]">
      <seq>cttgttagttcggacgatatagagtcgattagaatggatctctcagagattggaagaagctttagatcatcatttaggcgccagacttcgattttgaggagtaattcagctttgagtgcttctgaaaaggacgacgttgtggatgaggagaacatgttggcttgggcagcaattgagagactgccaacgtatgacaggttgagatcatctgtatttgaggaagtcaatggcaatgaggccaatgttaagacgaaaagagtaactgatgttaccaagcttggagctgtagaaaggcatgttttcattgaaaagatgattaaacacattgaacatgacaaccttcaattgttgcacaaaatcagaaagagaattgacaaagttggtgtaaaattgcctactgtggaagtgagatacaaaaatttaaccattgaagcagaatgtgagctagttcatggaaagcctctccctactctttggaattctctcaaaagcacaataatgaaccttgccaggcttccaggcctacagtcagaaatggccaagataaatatcattaatgatgtcagcggtgtaataaaacccggacgtatgactctactgcttggacctcctgggtgtggaaaaacaacactgctgaaagcactttcaggaaatctggacaattctcttaaggtttctggggagatttcttataacggctataaattggaggaagttgaccacagnaaacttctgcatatataagccaaaatgacctacacatccctgaaatgactgttagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="110510" stop="107022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110210" g_stop="109834" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109833" i_stop="109614" i_length="220">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109613" g_stop="109490" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="501" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109489" i_stop="109007" i_length="483">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109006" g_stop="108921" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="587" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108920" i_stop="108023" i_length="898">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108022" g_stop="107938" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="672" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107937" i_stop="107437" i_length="501">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.284" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107436" g_stop="107322" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="786" r_length="114" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E542052" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110210" e_stop="109834"/>
          <exon e_start="109613" e_stop="109490"/>
          <exon e_start="109006" e_stop="108921"/>
          <exon e_start="108022" e_stop="107938"/>
          <exon e_start="107436" e_stop="107322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAAGTAAGATTTCTGTTAGTTACTTGCCACTATAAGTTAAATTATTGACACTACTGGAAGGTCATTGCTCTAGCATTTAAAGTTGCTATCTTTTTATTGGTGATTGACAATGCTAAGTTATGATCATCATTATCCGCATATCTAACGTCTTCTTTCTCATTTTATCAAAGTTTTATCTGTTAGACTTAATTCAATGACCTGAGGCTACGGTTGACTCTTGTAGAGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATGGTAATTTTTTGCTATTTGATTACAGTTCGTTTTTATTGTCATCAATCTGATCTCTTACATATGTGATAGTTCAAATCAAAGTTGCAGGCGCTGGGTTTAAAAATTGATCATCAGGAGGCATTTATTAGGACTTCATGTAACAGAAGGTGTTATTAATTGAACCACTTGAACTGGAAATGCTTGAATCTTTCTTGTGCTAATCTGTCCAGCCCGATACTCTGGGTTGTCTACTTTTAATTAGTATTTTCCATTAGTTGATTTCAGCTATATGTGACAACAATAAGTTATTTTTCTGATGCACTGTAATCAATGTTGCTAGAAAAAGTAAGAGAGACTTAAATGAGCATCTTTAAAGTAATCCTGGTTTCAGCACTCAAATATTTCATGCATACAGAAAGTGCAAGCTCCAGCATTAGGTTATTCTGTTGTGCTACTTGTGATTTTGACAGTTCTCTTAATCTAGTGCTTCAATTTTTTCGACAGAACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGGCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAACCCGGACGGTATGTCATCAAAGCTTTTCCATGGCATATCTGGTGCAATAAGTGTCTCATCAATCTTCACTTGTTGACTGAACAAGAACAACAAAAACAGAATATGTGATGATTGTATTAAACTCAGTATTGATGAACATGCTTGTGAACTAGTCATCATAGCTTGTGAACTACTATAGTTTCTTACTACTTTGTGTCTTTTACTTTGTCTAGCTCTAATATGTTTATGACCAGTACTTCTCTTTCTTCAATAATCATAACTTTTTACTCTTACATTTCATTTAAACCACGTTGTGAAAAGTCGAAGGTCTATTAGAAACAACCTCTCCACCTCACAAAGGTAGGGTTAAGGTCTGTATATACACCCACCTCCCAGACCCACTTGTGGGACTGTACTACATATATTATTGTTGTTGTTGCTTGTGAACTAGTCATGCTTTGTTTTATTTATCACTTGATATTTACATAGCCCTATTCAGTAATGGTCATTTGGTGGTATGTAAGAGAAACGGTTAAGTGAACCAAAAAAACATTCAGCCTCTCCATAATTGCAATTGAAAGATGAATAAATACTTGCTTGCATGGTATTGTTCTGCAGAAAGTAAATTGACTAGCATCAATGCAAGTGATTATTTAGTGATTATATTATCATAACATAAACTGGCAAGAAGGTCTTTTGAGGTATATTTGGTTTTATGTGATCAAGTGTCTGAACTGGTCTTGCATTTGTGATAATTTTGAGATGAAGGGTTGACTGCAGCTTACTTTTTCTGGCTAATTTCAGTCTACCTTTTAGCAGCATGTTCTGAATGGAGAGTTAGCTCTTCATTCTGAAGTCATTGTTTTAACATGTGAGTTCTTGAACCTGTCATTTTGAACTTACTCAAATTCTTTGCTATTCTAACAGTATGACTCTACTGCTTGGACCTCCTGGGTGTGGAAAAACAACACTGCTGAAAGCACTTTCAGGAAATCTGGACAATTCTCTTAAGGTCTCTTCAAGTTGTTTCTCTTTTAATGTCAGACAAAAAAGAAAGCTGTTTTTGCTTTAATGTCAGCAAGAGAAAAATATAGGAATACTTCCTTAAAAGATATAAAATCCTTCAGCTCATATAAGCAAATACTTTGATCTACAACATACTGTGAATTAGTAGTTCTCTATTTCAATGATATGAACTTTTCCAGGTCTTCATTTGTTGTATTTGTTTTATTAGTGACTTCTTCTGGTTCTTCTTAGTTACTTTTAGTTCCTTTATATCTTTAAGATCTCAGCTAGGGAACACTTAATCCTATCTTTCTCCCGTTTCACCAATAGAACAGAAGCTTTATTGACTTCACCAACGCCTCCTCCAAGAAGAAACTAGTGAAGAGTTGCGCTAATTTTTGCACCTTTACTTGAACGAGAATGGTGTAGAATTCATGTATGGATAGAGTTAATAACATTTGGAATTGATGTCAATCTGACTGTGTCTGCTTCTGGCCATGTCTAACAGGTTTCTGGGGAGATTTCTTATAACGGCTATAAATTGGAGGAGTTTGTACCACAGAAAACTTCTGCATATATAAGCCAAAATGACCTACACATCCCTGAAATGACTGTTAGAGAAA</genome_strand>
        <mrna_strand>CTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAA............................................................................................................................................................................................................................AGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGGCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAACCCGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACTCTACTGCTTGGACCTCCTGGGTGTGGAAAAACAACACTGCTGAAAGCACTTTCAGGAAATCTGGACAATTCTCTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGGGGAGATTTCTTATAACGGCTATAAATTGGAGGAAGTTG-ACCACAGNAAACTTCTGCATATATAAGCCAAAATGACCTACACATCCCTGAAATGACTGTTAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542059" ref_strand="+" ref_description="SGN-E542059 [TUS-63-C18]">
      <seq>cttgttagttcggacgatatagagtcgattagaatggatctctcagagattggaagaagctttagatcatcatttaggcgccagacttcgattttgaggagtaattcagctttgagtgcttctgaaaaggacgacgttgtggatgaggagaacatgttggcttgggcagcaattgagagactgccaacgtatgacaggttgagatcatctgtatttgaggaagtcaatggcaatgaggccaatgttaagacgaaaagagtaactgatgttaccaagcttggagctgtagaaaggcatgttttcattgaaaagatgattaaacacattgaacatgacaaccttcaattgttgcacaaaatcagaaagagaattgacaaagttggtgtaaaattgcctactgtggaagtgagatacataaatttaaccattgaagcagaatgtgagctagctcatggaaagcctctccctactctttggaattctctcacaagcacaataatgaaccttgccaggcttccaggcctacagtcagaaatgcccaagataaatatcattaatgatgtcagcggtgtaataaaaccccggacgtatgactctactgcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="110510" stop="107704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110210" g_stop="109834" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109833" i_stop="109614" i_length="220">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109613" g_stop="109490" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="501" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109489" i_stop="109007" i_length="483">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109006" g_stop="108921" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="588" r_length="87" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108920" i_stop="108023" i_length="898">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108022" g_stop="108004" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="607" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E542059" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110210" e_stop="109834"/>
          <exon e_start="109613" e_stop="109490"/>
          <exon e_start="109006" e_stop="108921"/>
          <exon e_start="108022" e_stop="108004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAAGTAAGATTTCTGTTAGTTACTTGCCACTATAAGTTAAATTATTGACACTACTGGAAGGTCATTGCTCTAGCATTTAAAGTTGCTATCTTTTTATTGGTGATTGACAATGCTAAGTTATGATCATCATTATCCGCATATCTAACGTCTTCTTTCTCATTTTATCAAAGTTTTATCTGTTAGACTTAATTCAATGACCTGAGGCTACGGTTGACTCTTGTAGAGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATGGTAATTTTTTGCTATTTGATTACAGTTCGTTTTTATTGTCATCAATCTGATCTCTTACATATGTGATAGTTCAAATCAAAGTTGCAGGCGCTGGGTTTAAAAATTGATCATCAGGAGGCATTTATTAGGACTTCATGTAACAGAAGGTGTTATTAATTGAACCACTTGAACTGGAAATGCTTGAATCTTTCTTGTGCTAATCTGTCCAGCCCGATACTCTGGGTTGTCTACTTTTAATTAGTATTTTCCATTAGTTGATTTCAGCTATATGTGACAACAATAAGTTATTTTTCTGATGCACTGTAATCAATGTTGCTAGAAAAAGTAAGAGAGACTTAAATGAGCATCTTTAAAGTAATCCTGGTTTCAGCACTCAAATATTTCATGCATACAGAAAGTGCAAGCTCCAGCATTAGGTTATTCTGTTGTGCTACTTGTGATTTTGACAGTTCTCTTAATCTAGTGCTTCAATTTTTTCGACAGAACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGGCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAA-CCCGGACGGTATGTCATCAAAGCTTTTCCATGGCATATCTGGTGCAATAAGTGTCTCATCAATCTTCACTTGTTGACTGAACAAGAACAACAAAAACAGAATATGTGATGATTGTATTAAACTCAGTATTGATGAACATGCTTGTGAACTAGTCATCATAGCTTGTGAACTACTATAGTTTCTTACTACTTTGTGTCTTTTACTTTGTCTAGCTCTAATATGTTTATGACCAGTACTTCTCTTTCTTCAATAATCATAACTTTTTACTCTTACATTTCATTTAAACCACGTTGTGAAAAGTCGAAGGTCTATTAGAAACAACCTCTCCACCTCACAAAGGTAGGGTTAAGGTCTGTATATACACCCACCTCCCAGACCCACTTGTGGGACTGTACTACATATATTATTGTTGTTGTTGCTTGTGAACTAGTCATGCTTTGTTTTATTTATCACTTGATATTTACATAGCCCTATTCAGTAATGGTCATTTGGTGGTATGTAAGAGAAACGGTTAAGTGAACCAAAAAAACATTCAGCCTCTCCATAATTGCAATTGAAAGATGAATAAATACTTGCTTGCATGGTATTGTTCTGCAGAAAGTAAATTGACTAGCATCAATGCAAGTGATTATTTAGTGATTATATTATCATAACATAAACTGGCAAGAAGGTCTTTTGAGGTATATTTGGTTTTATGTGATCAAGTGTCTGAACTGGTCTTGCATTTGTGATAATTTTGAGATGAAGGGTTGACTGCAGCTTACTTTTTCTGGCTAATTTCAGTCTACCTTTTAGCAGCATGTTCTGAATGGAGAGTTAGCTCTTCATTCTGAAGTCATTGTTTTAACATGTGAGTTCTTGAACCTGTCATTTTGAACTTACTCAAATTCTTTGCTATTCTAACAGTATGACTCTACTGCTTGGA</genome_strand>
        <mrna_strand>CTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAA............................................................................................................................................................................................................................AGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACATAAATTTAACCATTGAAGCAGAATGTGAGCTAGCTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCACAAGCACAATAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGCCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAACCCCGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACTCTACTGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556422" ref_strand="+" ref_description="SGN-E556422 [cTSD-3-G9]">
      <seq>cttctcaattttgaaaatcaaaatttgtgctctccatccgtcagccttcgtctaaactgtccgccatttttgtctactttgtcagcctttgaaaatcaaaattgtgctctccgtccgtccgtcttcgtctaatctgtccgccatttagtgtctactctgtccgccttaaaaaatcaaatcgccaatttcgtctactctgtccgccattttcgtccaatattcttgaaagattgggcagcattggatgcatataaagacaagaaaactggagaacttttgggtccacaacattcgtttaatgtggagtttgctcaagacaacatgcaacaaataagtgatagccttgattgcggactattcgtaattgtatatgcagaattctgagtgacaaaatcaacatgtcatgtaatagttttaagagtagctatcttcgcaaaagatatgcgattcttttattgaagtatggtctcgacaagatgaatgctggatatgttagcaacagtgatgacccttcaagaatgaagaatgtattaaacccatcatctgaagatgaaattgttaatgtaggctagttagttttcaatgtttgatttttttttgttttttggagttaaacaagatgtttgaagtatttattgacataacaacacatattgttaaattatgaaagtgttttgatttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="114339" stop="116366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114639" g_stop="114866" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114867" i_stop="115534" i_length="668">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115535" g_stop="115649" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="344" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115650" i_stop="115723" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115724" g_stop="116072" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="693" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E556422" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114639" e_stop="114866"/>
          <exon e_start="115535" e_stop="115649"/>
          <exon e_start="115724" e_stop="116072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTT-TTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTTTGTCCGCCATTTTCGTCTAATATTCTTGAAAGGTATTGTGTTCTTCTTCGATTCTCTCTTTTCATTCTTCTATTTTTCTAATATTTCATGGATCATCTGTCATTTAGTATTGGGATTACTCAAATAATCACTTCAAACTCTAAACAAATCTATATTTTTGAAGATCCGAAATTGGTTGAAAACAAGTCTAAGAACTTGCATAATTGGTTTGCATTGTGTTGTTACAATTATGTATCAAGCACAATTTATGTTTCATGTATCATGTTAAAGTTTGTCGTTTATATAAAGTATCAAGTAGACAGACTTATAACTATAGTTACACGTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAACTGTAGTTACACTTATGTATCAAGTACAACTTTGCATTTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACGTATGATATGTTGTTAGAATTATGTATCAAGTTTATTTTTGCATTTTATGTATCATATTAACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAATTGTAGTTACCTTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTACGTATCATTTTGACTGACTTATGATATGTTGTTAGAACAGATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCTGTGAGTATTGTTTATTATTTTATTTTATTTTTTGTATCTATTCATCCTTATAATTATTCTTATTGTTTTGGTAGTGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAATGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</genome_strand>
        <mrna_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAAACTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTAGTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT..........................................................................TGATTGCGGACTATTCGTAATTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTGACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745312" ref_strand="+" ref_description="SGN-E745312 [GI|47105766]">
      <seq>gaccctgagaacgcgggttcaccagtgatgcccaaaaacacggaggggagaatgctcgcacacgccagctatgttgttgttaaccaaaacgatgagacactgtggaaataatcccacaaagatcattggtgttagtgaagtatttttcagttcagggtttaggagattctgtattactggtccatgcagttgggaatgcacggaaatcttgtggcagtagtttaatgttctattggagtgtagtcttggggttgttctaggttagcaatggaaagtaaagtagtagacgaaaatgaggaaggtccggttgttcccatgcgagttgatagatttggttttgtgaagcaggaacatggtcctactgaaggtttagcaaggagccggtcggcctttgaatatcagagagatgaaagaaggattaggaaatggagaaaaatgataggtgttggaggaagtgattggaagcagtatgttaggaggaaaccacatgttgttaaacgaagaatacggaaaggaattcctgattgtctgagggggcttctctggcagctaatttctggaagtcgagacctcttgttgttaaatcctggagtttatgagcaactagtcatatatgagacatcagcttccgagttggatattattcgagatatttctcgcacatttccttcacatgttttctttcagcagagacatggacctggtcaaaggtctctttacaatgttctgaaagcatattctgtctttgaccgagatgttggatacgtacagggcatgggatttgtggcaggtctgcttcttctttacatgagtgaagaggatgcattttggttactggttgcattgttgaagggagccgttcacactcctatggaaggaatgtacttggtaggattgcctctagtccagcaatatctctttcaatttgatcatttggtgaaagagcacatgccgaagttgggtgaacattttgctcaggaaatgataaatcccagcatgtatgccagtcagtggttcataacagttttctcgtactctttcccgtttcacttggctctcagaatttgggatgtctttctttttgagggtgtaaaagtagtcttcaaagttggcttggctctactgaaatattgccatgatgatctggtaaagttgccatttgagaaactcatacatgctttgcgcaacttccctgaggatgccatgaatccagatatacttttaccaatggctttttcaatcaaggtttccaagagtttggtggaactgaagcaggaatatgaacagcaacgactgaaacctcctgaatccccagtcaaacagtaagatgtatcaaatgcaaaatacttctggagaaacaatcaacagcttttgtgcacaaacttggattctttagttctctgtttaaaaaactgtctcagctgatgtacataatcacattgatcagattacccgatccatacagttttagtacaaaatagtttattatttgaaggagaaggcacctcagtctttgccatgagggtcaattgtacaagtccaactagtcttcttatgtaaaaatgttatgtgcatttctctctttgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="118093" stop="124998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118392" g_stop="118481" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118482" i_stop="119235" i_length="754">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119236" g_stop="119295" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="150" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119296" i_stop="119395" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119396" g_stop="119649" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="404" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119650" i_stop="120169" i_length="520">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120170" g_stop="120365" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="600" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120366" i_stop="120618" i_length="253">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120619" g_stop="120789" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="771" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120790" i_stop="120872" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120873" g_stop="120989" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="888" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="120990" i_stop="122314" i_length="1325">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122315" g_stop="122512" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="1086" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122590" g_stop="122649" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1087" r_stop="1146" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="122737" g_stop="122835" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1147" r_stop="1245" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="124354" g_stop="124699" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1591" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1592" polyA_stop="1605"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E745312" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1591</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118392" e_stop="118481"/>
          <exon e_start="119236" e_stop="119295"/>
          <exon e_start="119396" e_stop="119649"/>
          <exon e_start="120170" e_stop="120365"/>
          <exon e_start="120619" e_stop="120789"/>
          <exon e_start="120873" e_stop="120989"/>
          <exon e_start="122315" e_stop="122512"/>
          <exon e_start="122590" e_stop="122649"/>
          <exon e_start="122737" e_stop="122835"/>
          <exon e_start="124354" e_stop="124699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTGAGAACGCGGGTTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAACGTAATTTTTCTTTTATCTTTTATCGTTTGTTGGAAAATCATAGTATTTCGTGTCAACAAGATAATCAAATTACATGGTTTAATTTCTCCATAATGCTGGAATTTTATATCTCAGGTTTGGTTTTCTCCGTCAATTGCTACCCTTTTTTGTTTTTTCCCCCCTTTAAATTAAATCGATGATTGATTTGTTGATATGGACATTCTCAATCCAAGAATTTAAAGGTTGTATATTTCTTTAAAATTGAATGTGGGTTTTTGATTTCTCTCTTATTTGTGTACCCTTTGTTCTTGTTTTTGTTTTGGGGTTTTGATTTGAATGTTATAGATTTGGGTGTCCTCCTTTAATGCTGATATTGCTGTTTGTCTGCATTTTAATAAATTATCTATACCCTCATTTACAGTCTTGTTATACCCTTTTTGGGGGTCGAGTGGGGGTGGGGGCTGCTTTCCTATTTTTGGGTCGATTAGATGACTAAAAATCAATTTCTTTACCCTCATTACAGTCTTGTTTTTACCCTTTTGGGGGTTATTTGAGAGGCTGCTTTCTCGATTTGCGTGATTTGGGGCTGGTTAGATAACTAAAAGTCAATTTCTTATGCAATAACCAGATGGTGATGAAAAATGTTGGATTAAAGTAGGCGAAAATAATCCAAAAACCAGGTCCTTGGTGTATGATACTAATGTATGCTGAGGCAATTTTCAGATTCTCTTTTAATATTTGGAAGGGGTCTAAAATTTCTCTTTCTTCTTCATAGGATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAGGTGAATTTATCTAAGATATCTTTTTTGTGATAAATTGGAAAGGTTTTTCTCTACTGTTGTGATGTTTTTATCTGTTAATAAGAGTGCCATTGTTTTGCAGTTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAGGTAGGGACCTTTTGTTTGATTCATTAGTTGCTGTAGTTATGTCCTATTTCGACTTCTCCAACAAACTCTTGTTCTCTTTTTCCACACTCACTCAATTTGCCATCCTGAAGAATGAAATATAAACATATTTGGTGATATCACAAAATTTAAATGGAGCTTCTTCAGATGTTTAATCAACAAACTCCATACTAAGAAACTAAATCTAATGCATTGCTCCTGTGCGATGAACAACTTTGTTTCTGAAGTATTTCTACTGGTGTTTGGGGCAATTGAATCTTTATAATGTAATATTCGTGTACGAAAAGTAAATCGTATGGTTACACATATAAGTGAACATATTTGTGTCAGGAATAATAGCATTAAACTGGTACTAATAGAGTAGAATGGATATATGGATACAACTGAACCCAATTTGTTTGGAATTAACATGTGTGTGTATTTTTAGAAAGGTAACAAAGAATTATGGTGTATTAATTGATTCACTGATTCTCTTATTACATTTATTAAATATATTTTGCAGAGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAGGTAGGAGTTAACTTTTGTCTGGTTTTATTCTTCTTATTTGTTTTCTGGAAAAAGTCTTGATGCTTCAGTAACTAATGGAGATAGATAATTTGTTTGAGCCTAGGAGAAAAGCTTAACGTCCTACCTTTTTGGCTAATTTTGTAGTTCGGGCTAATTCTGCTTTTCAATTGATTGCTCGGTCCTTGACATGTTCTTTTTTGCTTTACCTGTGTAATGGAGATCTCTCATCTGATTAGTGTTTTATCTTCTGCAGCAACTAGTCATATATGAGACATCAGCTTCCGAGTTGGATATTATTCGAGATATTTCTCGCACATTTCCTTCACATGTTTTCTTTCAGCAGAGACATGGACCTGGTCAAAGGTCTCTTTACAATGTTCTGAAAGCATATTCTGTCTTTGACCGAGATGTTGGATACGTACAGGTATACATCTTTAAATTATTGATTCACATGTGATCTAGTGTATGGTTATCGATTTGGGTTGATTCTTATCATTTTGGTTGCAGGGCATGGGATTTGTGGCAGGTCTGCTTCTTCTTTACATGAGTGAAGAGGATGCATTTTGGTTACTGGTTGCATTGTTGAAGGGAGCCGTTCACACTCCTATGGAAGGAATGTACTTGGTAAGCCTTTACCTTCAAGCAGCTTGTTGCAGCCCCTGATAAATGTATATGGTCAATGCATTTGAACGAAAAAGGATTTGGTTGTGAAATATCTGATCAATTTTTTAGCATGAAGAATTTGACTATTCTTTTAAACCCCGCTTTGACCATGGTATCCAATTTAAACACCAAACTTTATGCTTTTTTATCCTTAATGCGATCAACTGCTACAATTCCAGAAAACCACTTCCATAGTCTAGGGTCCATATAGTAGTTAAACATAACTACATGATGTGTCTCTGTGTCCATATAGAGCCTATATCTAGTATCAGCTACTCTATCCTTTCCAATTTATACCGTGCTGTTTGATTTCGTAAATGTCTTTCCAATTTTTATGATGGTGCTCAATTTTGACATAGTTTAAGATATTCATTTTTGTCTTATGTATTATATCAGTTTGTAACGGAAAAAAGAGTGAATTAATGGTTGAAAAGTTAGCTTGATAGAGAAAAAGTCGCTTGAGAGTTAAATATTTATATAATTAAATGGATTTGAATTCTTAGAGTGGTGAACGTTGGATAGAGATTAAATTGTGTCTAATATTTTGGAATATCCCAAGCTAGGGTCACCTTTTAAATGATTTCATTCTTACATTTAATATGCTAGTAGTTACATAAGTCCCCGATGCCGTATCTTTAAGGTTTCTACTGGATGTGGAACGGAGTGGTAACCTCATTTGCATGTGGAGCAATAGGATTATTCCAAGTAACTTCGAATAGTTTTATGGCAAGGTTGGAATGCCTTATTCTCTTGGACGGATTGCGTTCTTTGTGCTCTTCCTCCATATACTAATAAAGTGAGAGTTGGGCCTCCTCACATCTTTTGTGATCTGAGTCCAATATAAAGTTGGCATCACATATTGTTATTTAAACACTTTTACTGAAGTTGGAACCTGCAGCATAATTGCCTTGAGGTTGCTTTTCAACCTATCTGAACTCTGAAGTTCTCAAAGTTTCGATAAGCTGGTCCATTGCTTCCTTTTTTTTTTTTGCAGTGAATAAATACTTGTGATAAACCAATCAGTTAAGAACGATTTATGAGAATTAATGTACCAAGTTGTTTGTTGTCCAGTTCTGTTTAGTATTTAGATGTTACATGAAATTCTGTCATTTTTTACGATGTCCATGAATTCTCTACTATCATGATCTCTGATCCTGGCTGTTGCTATATTTCTCTCGAGACTTTCAGCCGCTTCCACATATCAGGAAGTCTTTGTTTTGATTACATAACATCTGTCATATGGCCTACTTTATATTAAAATAATAAATGTTGTACATGCGGATTAGGTAGGATTGCCTCTAGTCCAGCAATATCTCTTTCAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAGGTCAGTAATCTATCATTATTATATCCACTCTCTGGTGCCTGGATTTACTGTTGAGCTTACCGAGTTAACTGTACCAGGGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTGGTAAGTTTTAAATACAGAAAAGTTAATGAGTGCTATTTTTCCTTGCTCCTACAGGTTAGAACAACTATAACACTCTCTTATTCGCAGGTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAGGCTAGCCTCCCCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTCACCCCCTCCTTCCCTGTGATTAGCCAAGACTCTCCTCGCCTAACAATGATATGTAAGGGTTAGACAAATGCTTGTAGGTTCCTATATTATTTTTCAGAGTGATACTTATTTCTTATTTATCTTTCCAAAGACTCTTTTATGGGAAGGGATGGAGTTGGTATAGCTGAGGGAAAAATTTTAAATTGGAATTAACACAGATAAAAAGGAAACTAATGGAAACATTAACTTGTGATGATTTTGTAACAGACAAGCAATATGCAGTACAATTTTAGCAACTTGAGGGGAGGTTTACATGATTAATCATACTTTAATTTCACCAGCTAGGGAAACATCCTTGCCCTCCTAAGACATTTGCGAAGAAACCAAATAAAAAACAACAATAAAAAAAATGAAAAGAAAGAAAACATTTGTAGTCAAAGCGCATCCACTGCTTCCCAATATGTTCACGTACAAAACATTGGTTTTTCTTATTTTATTGAACTAGGCAATAAAACACTGTTTGCTTGCATAATTAGTTCAAGTTAATTGACTGTTGTTCCTTGAGCGAATTTTCTAAGTAATGTTTGTTTTCTTTCTCTGGTGCTGTGTCTTGTTATCTACTGGGCGTGATTTCAGGTGTTCTGCAGTTCTTAATCAGTGTTTATACGTCTCCTGTACATGTGATGGTGCCTCATAACTTTGACAATTTTATGTCAAGCTTCAGTCTGAAGTGTGAAAATGTTGAACTTAAACTAGGCACTCTACCTTGTATTGAAATTTATTTCTCATTGTTATACATGATAATATTCATTTACTTTTTTATTTGTGGGTAGTTTTGCATCAGTTGTGCTTGTGTTTTCTCTTGCATGTCTATTTGTACATCTTCCTTAGCCATTTTGATGCATTCCTCTTGTGGCAGTGGTGTGGTTAATCAGCAGTTCATAGGTTGAACTTAAATTGGTGGATGTTTAGCAGCCAGACTTGTGAACCTAGAATTGTCTCTATGTGGATCTACATACTAGAGTAGTTTGAGTAGATACGAGTAGAATCTAACCAGTACAGGCTTGTTGTAAGGCTGCTGAGTTTGGCTCAAGGAGAGCTTCATAAATGGATTAAGTTTAGAAGCAAAACTCTAGCATGATAACTGATGAATATCAAATATAATTGAATGCATATAGATTGCAAGCCTGTCGGTTAAGTAGCACTATAAAGCTGTATGTGGCAAAGATTTGTTTCCAAGCCTATGCAAGGATTAAAGGGAAGGAATTGTAATTAGTTAAAGAGTAATTATAGTATACTTGATGATATTTCTTTACATATCTGATTTCTCAGAAAGAGTAGTTAATCTGGATATAACACAAGACTGAAACAATGTAAAGGGTAACAAAAGGCTCTCAGCATCTGAATGAATCCTCATTTGATTGCTGCCCCCCACCCCCCCCCCGTGTCATCTCGTTAAGCTATTTCTCATTTGTATTTGTTCTTTTCATTTAATAGGTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAG</genome_strand>
        <mrna_strand>GACCCTGAGAACGCGGGTTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAG....................................................................................................TTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAG.............................................................................................................................................................................................................................................................CAACTAGTCATATATGAGACATCAGCTTCCGAGTTGGATATTATTCGAGATATTTCTCGCACATTTCCTTCACATGTTTTCTTTCAGCAGAGACATGGACCTGGTCAAAGGTCTCTTTACAATGTTCTGAAAGCATATTCTGTCTTTGACCGAGATGTTGGATACGTACAG...................................................................................GGCATGGGATTTGTGGCAGGTCTGCTTCTTCTTTACATGAGTGAAGAGGATGCATTTTGGTTACTGGTTGCATTGTTGAAGGGAGCCGTTCACACTCCTATGGAAGGAATGTACTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGATTGCCTCTAGTCCAGCAATATCTCTTTCAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAG.............................................................................GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTG.......................................................................................GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341481" ref_strand="+" ref_description="SGN-E341481 [cTOE-23-F19]">
      <seq>ttcaccagtgatgcccaaaaacacggaggggagaatgctcgcacacgccagctatgttgttgttaaccaaaacgatgagacactgtggaaataatcccacaaagatcattggtgttagtgaagtatttttcagttcagggtttaggagattctgtattactggtccatgcagttgggaatgcacggaaatcttgtggcagtagtttaatgttctattggagtgtagtcttggggttgttctaggttagcaatggaaagtaaagtagtagacgaaaatgaggaaggtccggttgttcccatgcgagttgatagatttggttttgtgaagcaggaacatggtcctactgaaggtttagcaaggagccggtcggcctttgaatatcagagagatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="118109" stop="119956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118409" g_stop="118481" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118482" i_stop="119235" i_length="754">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119236" g_stop="119295" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="133" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119296" i_stop="119395" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119396" g_stop="119649" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="387" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E341481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118409" e_stop="118481"/>
          <exon e_start="119236" e_stop="119295"/>
          <exon e_start="119396" e_stop="119649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAACGTAATTTTTCTTTTATCTTTTATCGTTTGTTGGAAAATCATAGTATTTCGTGTCAACAAGATAATCAAATTACATGGTTTAATTTCTCCATAATGCTGGAATTTTATATCTCAGGTTTGGTTTTCTCCGTCAATTGCTACCCTTTTTTGTTTTTTCCCCCCTTTAAATTAAATCGATGATTGATTTGTTGATATGGACATTCTCAATCCAAGAATTTAAAGGTTGTATATTTCTTTAAAATTGAATGTGGGTTTTTGATTTCTCTCTTATTTGTGTACCCTTTGTTCTTGTTTTTGTTTTGGGGTTTTGATTTGAATGTTATAGATTTGGGTGTCCTCCTTTAATGCTGATATTGCTGTTTGTCTGCATTTTAATAAATTATCTATACCCTCATTTACAGTCTTGTTATACCCTTTTTGGGGGTCGAGTGGGGGTGGGGGCTGCTTTCCTATTTTTGGGTCGATTAGATGACTAAAAATCAATTTCTTTACCCTCATTACAGTCTTGTTTTTACCCTTTTGGGGGTTATTTGAGAGGCTGCTTTCTCGATTTGCGTGATTTGGGGCTGGTTAGATAACTAAAAGTCAATTTCTTATGCAATAACCAGATGGTGATGAAAAATGTTGGATTAAAGTAGGCGAAAATAATCCAAAAACCAGGTCCTTGGTGTATGATACTAATGTATGCTGAGGCAATTTTCAGATTCTCTTTTAATATTTGGAAGGGGTCTAAAATTTCTCTTTCTTCTTCATAGGATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAGGTGAATTTATCTAAGATATCTTTTTTGTGATAAATTGGAAAGGTTTTTCTCTACTGTTGTGATGTTTTTATCTGTTAATAAGAGTGCCATTGTTTTGCAGTTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAG</genome_strand>
        <mrna_strand>TTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAG....................................................................................................TTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236040" ref_strand="+" ref_description="SGN-E236040 [cLED-16-H1]">
      <seq>aaaacacggaggggagaatgctcgcacacgccagctatgttgttgttaaccaaaacgatgagacactgtggaaataatcccacaaagatcattggtgttagagaagtattttacagatcagggtttaggagattctgtattactggtccatgcagttgggaatgcacggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="118126" stop="119750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118426" g_stop="118481" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118482" i_stop="119235" i_length="754">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119236" g_stop="119295" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="116" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119296" i_stop="119395" i_length="100">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119396" g_stop="119450" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="171" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E236040" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118426" e_stop="118481"/>
          <exon e_start="119236" e_stop="119295"/>
          <exon e_start="119396" e_stop="119450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAACGTAATTTTTCTTTTATCTTTTATCGTTTGTTGGAAAATCATAGTATTTCGTGTCAACAAGATAATCAAATTACATGGTTTAATTTCTCCATAATGCTGGAATTTTATATCTCAGGTTTGGTTTTCTCCGTCAATTGCTACCCTTTTTTGTTTTTTCCCCCCTTTAAATTAAATCGATGATTGATTTGTTGATATGGACATTCTCAATCCAAGAATTTAAAGGTTGTATATTTCTTTAAAATTGAATGTGGGTTTTTGATTTCTCTCTTATTTGTGTACCCTTTGTTCTTGTTTTTGTTTTGGGGTTTTGATTTGAATGTTATAGATTTGGGTGTCCTCCTTTAATGCTGATATTGCTGTTTGTCTGCATTTTAATAAATTATCTATACCCTCATTTACAGTCTTGTTATACCCTTTTTGGGGGTCGAGTGGGGGTGGGGGCTGCTTTCCTATTTTTGGGTCGATTAGATGACTAAAAATCAATTTCTTTACCCTCATTACAGTCTTGTTTTTACCCTTTTGGGGGTTATTTGAGAGGCTGCTTTCTCGATTTGCGTGATTTGGGGCTGGTTAGATAACTAAAAGTCAATTTCTTATGCAATAACCAGATGGTGATGAAAAATGTTGGATTAAAGTAGGCGAAAATAATCCAAAAACCAGGTCCTTGGTGTATGATACTAATGTATGCTGAGGCAATTTTCAGATTCTCTTTTAATATTTGGAAGGGGTCTAAAATTTCTCTTTCTTCTTCATAGGATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAGGTGAATTTATCTAAGATATCTTTTTTGTGATAAATTGGAAAGGTTTTTCTCTACTGTTGTGATGTTTTTATCTGTTAATAAGAGTGCCATTGTTTTGCAGTTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAA</genome_strand>
        <mrna_strand>AAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGAGAAGTATTTTACAG....................................................................................................ATCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327372" ref_strand="+" ref_description="SGN-E327372 [cTOC-19-G13]">
      <seq>aaacacggaggggagaatgctcgcacacgccagctatgttgttgttaaccaaaacgatgagacactgtggaaataatcccacaaagatcattggtgttagtgaagtatttttcagttcagggtttaggagattctgtattactggtccatgcagttgggaatgcacggaaatcttgtggcagtagtttaatgttctattggagtgtagtcttggggttgttctaggttagcaatggaaagtaaagtagtagacgaaaatgaggaaggtccggttgttcccatgcgagttgatagatttggttttgtgaagcaggaacatggtcctactgaaggtttagcaaggagccggtcggcctttgaatatcagagagatgaaagaaggattaggaaatggagaaaaatgataggtgttggaggaagtgattggaagcagtatgttaggaggaaaccacatgttgttaaacgaagaatacggaaaggaattcctgattgtctgagggggcttctctggcagctaatttctggaagtcgagacctcttgttgttaaatcctggagtttatgagcaactagtcatatatgagacatcagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="118127" stop="120680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118427" g_stop="118481" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118482" i_stop="119235" i_length="754">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119236" g_stop="119295" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="115" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119296" i_stop="119395" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119396" g_stop="119649" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="369" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119650" i_stop="120169" i_length="520">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120170" g_stop="120365" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="565" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120366" i_stop="120618" i_length="253">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120619" g_stop="120647" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="594" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E327372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118427" e_stop="118481"/>
          <exon e_start="119236" e_stop="119295"/>
          <exon e_start="119396" e_stop="119649"/>
          <exon e_start="120170" e_stop="120365"/>
          <exon e_start="120619" e_stop="120647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAACGTAATTTTTCTTTTATCTTTTATCGTTTGTTGGAAAATCATAGTATTTCGTGTCAACAAGATAATCAAATTACATGGTTTAATTTCTCCATAATGCTGGAATTTTATATCTCAGGTTTGGTTTTCTCCGTCAATTGCTACCCTTTTTTGTTTTTTCCCCCCTTTAAATTAAATCGATGATTGATTTGTTGATATGGACATTCTCAATCCAAGAATTTAAAGGTTGTATATTTCTTTAAAATTGAATGTGGGTTTTTGATTTCTCTCTTATTTGTGTACCCTTTGTTCTTGTTTTTGTTTTGGGGTTTTGATTTGAATGTTATAGATTTGGGTGTCCTCCTTTAATGCTGATATTGCTGTTTGTCTGCATTTTAATAAATTATCTATACCCTCATTTACAGTCTTGTTATACCCTTTTTGGGGGTCGAGTGGGGGTGGGGGCTGCTTTCCTATTTTTGGGTCGATTAGATGACTAAAAATCAATTTCTTTACCCTCATTACAGTCTTGTTTTTACCCTTTTGGGGGTTATTTGAGAGGCTGCTTTCTCGATTTGCGTGATTTGGGGCTGGTTAGATAACTAAAAGTCAATTTCTTATGCAATAACCAGATGGTGATGAAAAATGTTGGATTAAAGTAGGCGAAAATAATCCAAAAACCAGGTCCTTGGTGTATGATACTAATGTATGCTGAGGCAATTTTCAGATTCTCTTTTAATATTTGGAAGGGGTCTAAAATTTCTCTTTCTTCTTCATAGGATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAGGTGAATTTATCTAAGATATCTTTTTTGTGATAAATTGGAAAGGTTTTTCTCTACTGTTGTGATGTTTTTATCTGTTAATAAGAGTGCCATTGTTTTGCAGTTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAGGTAGGGACCTTTTGTTTGATTCATTAGTTGCTGTAGTTATGTCCTATTTCGACTTCTCCAACAAACTCTTGTTCTCTTTTTCCACACTCACTCAATTTGCCATCCTGAAGAATGAAATATAAACATATTTGGTGATATCACAAAATTTAAATGGAGCTTCTTCAGATGTTTAATCAACAAACTCCATACTAAGAAACTAAATCTAATGCATTGCTCCTGTGCGATGAACAACTTTGTTTCTGAAGTATTTCTACTGGTGTTTGGGGCAATTGAATCTTTATAATGTAATATTCGTGTACGAAAAGTAAATCGTATGGTTACACATATAAGTGAACATATTTGTGTCAGGAATAATAGCATTAAACTGGTACTAATAGAGTAGAATGGATATATGGATACAACTGAACCCAATTTGTTTGGAATTAACATGTGTGTGTATTTTTAGAAAGGTAACAAAGAATTATGGTGTATTAATTGATTCACTGATTCTCTTATTACATTTATTAAATATATTTTGCAGAGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAGGTAGGAGTTAACTTTTGTCTGGTTTTATTCTTCTTATTTGTTTTCTGGAAAAAGTCTTGATGCTTCAGTAACTAATGGAGATAGATAATTTGTTTGAGCCTAGGAGAAAAGCTTAACGTCCTACCTTTTTGGCTAATTTTGTAGTTCGGGCTAATTCTGCTTTTCAATTGATTGCTCGGTCCTTGACATGTTCTTTTTTGCTTTACCTGTGTAATGGAGATCTCTCATCTGATTAGTGTTTTATCTTCTGCAGCAACTAGTCATATATGAGACATCAGCTTC</genome_strand>
        <mrna_strand>AAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAG....................................................................................................TTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAG.............................................................................................................................................................................................................................................................CAACTAGTCATATATGAGACATCAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554292" ref_strand="-" ref_description="SGN-E554292 [cTSC-3-N15]">
      <seq>gggagccgttcacactctatggaaaggaaagtacttggtaggattgcctctagtccagcaatatctctttaaatttgatcatttggtgaaagagcacatgccgaagttgggtgaacattttgctcaggaaatgataaatcccagcatgtatgccagtcagtggttcataacagttttctcgtactctttcccgtttcacttggctctcagaatttgggatgtctttctttttgagggtgtaaaagtagtcttcaaagttggcttggctctactgaaatattgccatgatgatctggtaaagttgccatttgagaaactcatacatgctttgcgcaacttccctgaggatgccatgaatccagatatacttttaccaatggctttttcaatcaaggtttccaagagtttggtggaactgaagcaggaatatgaacagcaacgactgaaacctcctgaatccccagtcaaacagtaagatgtatcaaatgcaaaatacttctggagaaacaatcaacagcttttgtgcacaaacttggattctttagttctctgtttaaaaaactgtctcagctgatgtacataatcacattgatcagattacccgatccatacagttttagtacaaaatagtttattatttgaaggagaaggcacctcagtctttgccatgagggtcaattgtacaagtccaactagtcttcttatgtaaaaatgttatgtgcatttctctctttgtaaaggtagttttctgatcagtttacacgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="120653" stop="125023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120953" g_stop="120989" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120990" i_stop="122314" i_length="1325">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.546" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122315" g_stop="122512" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="235" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122590" g_stop="122649" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="295" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122737" g_stop="122835" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="394" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124354" g_stop="124729" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="770" r_length="376" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E554292" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120953" e_stop="120989"/>
          <exon e_start="122315" e_stop="122512"/>
          <exon e_start="122590" e_stop="122649"/>
          <exon e_start="122737" e_stop="122835"/>
          <exon e_start="124354" e_stop="124729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCCGTTCACACTCCTATGG-AAGGAATGTACTTGGTAAGCCTTTACCTTCAAGCAGCTTGTTGCAGCCCCTGATAAATGTATATGGTCAATGCATTTGAACGAAAAAGGATTTGGTTGTGAAATATCTGATCAATTTTTTAGCATGAAGAATTTGACTATTCTTTTAAACCCCGCTTTGACCATGGTATCCAATTTAAACACCAAACTTTATGCTTTTTTATCCTTAATGCGATCAACTGCTACAATTCCAGAAAACCACTTCCATAGTCTAGGGTCCATATAGTAGTTAAACATAACTACATGATGTGTCTCTGTGTCCATATAGAGCCTATATCTAGTATCAGCTACTCTATCCTTTCCAATTTATACCGTGCTGTTTGATTTCGTAAATGTCTTTCCAATTTTTATGATGGTGCTCAATTTTGACATAGTTTAAGATATTCATTTTTGTCTTATGTATTATATCAGTTTGTAACGGAAAAAAGAGTGAATTAATGGTTGAAAAGTTAGCTTGATAGAGAAAAAGTCGCTTGAGAGTTAAATATTTATATAATTAAATGGATTTGAATTCTTAGAGTGGTGAACGTTGGATAGAGATTAAATTGTGTCTAATATTTTGGAATATCCCAAGCTAGGGTCACCTTTTAAATGATTTCATTCTTACATTTAATATGCTAGTAGTTACATAAGTCCCCGATGCCGTATCTTTAAGGTTTCTACTGGATGTGGAACGGAGTGGTAACCTCATTTGCATGTGGAGCAATAGGATTATTCCAAGTAACTTCGAATAGTTTTATGGCAAGGTTGGAATGCCTTATTCTCTTGGACGGATTGCGTTCTTTGTGCTCTTCCTCCATATACTAATAAAGTGAGAGTTGGGCCTCCTCACATCTTTTGTGATCTGAGTCCAATATAAAGTTGGCATCACATATTGTTATTTAAACACTTTTACTGAAGTTGGAACCTGCAGCATAATTGCCTTGAGGTTGCTTTTCAACCTATCTGAACTCTGAAGTTCTCAAAGTTTCGATAAGCTGGTCCATTGCTTCCTTTTTTTTTTTTGCAGTGAATAAATACTTGTGATAAACCAATCAGTTAAGAACGATTTATGAGAATTAATGTACCAAGTTGTTTGTTGTCCAGTTCTGTTTAGTATTTAGATGTTACATGAAATTCTGTCATTTTTTACGATGTCCATGAATTCTCTACTATCATGATCTCTGATCCTGGCTGTTGCTATATTTCTCTCGAGACTTTCAGCCGCTTCCACATATCAGGAAGTCTTTGTTTTGATTACATAACATCTGTCATATGGCCTACTTTATATTAAAATAATAAATGTTGTACATGCGGATTAGGTAGGATTGCCTCTAGTCCAGCAATATCTCTTTCAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAGGTCAGTAATCTATCATTATTATATCCACTCTCTGGTGCCTGGATTTACTGTTGAGCTTACCGAGTTAACTGTACCAGGGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTGGTAAGTTTTAAATACAGAAAAGTTAATGAGTGCTATTTTTCCTTGCTCCTACAGGTTAGAACAACTATAACACTCTCTTATTCGCAGGTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAGGCTAGCCTCCCCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTCACCCCCTCCTTCCCTGTGATTAGCCAAGACTCTCCTCGCCTAACAATGATATGTAAGGGTTAGACAAATGCTTGTAGGTTCCTATATTATTTTTCAGAGTGATACTTATTTCTTATTTATCTTTCCAAAGACTCTTTTATGGGAAGGGATGGAGTTGGTATAGCTGAGGGAAAAATTTTAAATTGGAATTAACACAGATAAAAAGGAAACTAATGGAAACATTAACTTGTGATGATTTTGTAACAGACAAGCAATATGCAGTACAATTTTAGCAACTTGAGGGGAGGTTTACATGATTAATCATACTTTAATTTCACCAGCTAGGGAAACATCCTTGCCCTCCTAAGACATTTGCGAAGAAACCAAATAAAAAACAACAATAAAAAAAATGAAAAGAAAGAAAACATTTGTAGTCAAAGCGCATCCACTGCTTCCCAATATGTTCACGTACAAAACATTGGTTTTTCTTATTTTATTGAACTAGGCAATAAAACACTGTTTGCTTGCATAATTAGTTCAAGTTAATTGACTGTTGTTCCTTGAGCGAATTTTCTAAGTAATGTTTGTTTTCTTTCTCTGGTGCTGTGTCTTGTTATCTACTGGGCGTGATTTCAGGTGTTCTGCAGTTCTTAATCAGTGTTTATACGTCTCCTGTACATGTGATGGTGCCTCATAACTTTGACAATTTTATGTCAAGCTTCAGTCTGAAGTGTGAAAATGTTGAACTTAAACTAGGCACTCTACCTTGTATTGAAATTTATTTCTCATTGTTATACATGATAATATTCATTTACTTTTTTATTTGTGGGTAGTTTTGCATCAGTTGTGCTTGTGTTTTCTCTTGCATGTCTATTTGTACATCTTCCTTAGCCATTTTGATGCATTCCTCTTGTGGCAGTGGTGTGGTTAATCAGCAGTTCATAGGTTGAACTTAAATTGGTGGATGTTTAGCAGCCAGACTTGTGAACCTAGAATTGTCTCTATGTGGATCTACATACTAGAGTAGTTTGAGTAGATACGAGTAGAATCTAACCAGTACAGGCTTGTTGTAAGGCTGCTGAGTTTGGCTCAAGGAGAGCTTCATAAATGGATTAAGTTTAGAAGCAAAACTCTAGCATGATAACTGATGAATATCAAATATAATTGAATGCATATAGATTGCAAGCCTGTCGGTTAAGTAGCACTATAAAGCTGTATGTGGCAAAGATTTGTTTCCAAGCCTATGCAAGGATTAAAGGGAAGGAATTGTAATTAGTTAAAGAGTAATTATAGTATACTTGATGATATTTCTTTACATATCTGATTTCTCAGAAAGAGTAGTTAATCTGGATATAACACAAGACTGAAACAATGTAAAGGGTAACAAAAGGCTCTCAGCATCTGAATGAATCCTCATTTGATTGCTGCCCCCCACCCCCCCCCCGTGTCATCTCGTTAAGCTATTTCTCATTTGTATTTGTTCTTTTCATTTAATAGGTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTTTACACGCGTTTA</genome_strand>
        <mrna_strand>GGGAGCCGTTCACACT-CTATGGAAAGGAAAGTACTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGATTGCCTCTAGTCCAGCAATATCTCTTTAAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAG.............................................................................GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTG.......................................................................................GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTTTACACGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554131" ref_strand="-" ref_description="SGN-E554131 [cTSC-3-F14]">
      <seq>cagcatgtatgccagtcagtggttcataacagttttctcgtactctttcccgtttcacttggctctcagaatttgggatgtctttcttttcgagggtgtaaaagtagtcttcaaagttggcttggctataatgaaatattaccatgatgatctggtaaagttgccatttgagaaactcatacatgctttgcgcaacttccctgaggatgccatgaatccagatatacttttgccaatggctttttcaatcaaggtttccaagagtttggtggaactgaagcaggaatatgaacagcaacgactgaaacctcctgaatccccagtcaaacagtaagatgtatcaaatgcaaaatacttctggagaaacaatcaacagcttttgagcacaaacttggattctttagttctctgtttaaaaaactgtctcagctgatgtacataatcacattgatcagattacccgatccatacagttttagtacaaaatagtttattatttgaaggagaaggcacctcagtctttgccatgagggtcaattgtacaagtccaactagtcttcttatgtcaaaatgttatgtgcatttctctctttgtaaaggtagttttctgatcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="122119" stop="125017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122419" g_stop="122512" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122590" g_stop="122649" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="154" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122737" g_stop="122835" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="253" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124354" g_stop="124717" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="617" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E554131" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554131" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122419" e_stop="122512"/>
          <exon e_start="122590" e_stop="122649"/>
          <exon e_start="122737" e_stop="122835"/>
          <exon e_start="124354" e_stop="124717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAGGTCAGTAATCTATCATTATTATATCCACTCTCTGGTGCCTGGATTTACTGTTGAGCTTACCGAGTTAACTGTACCAGGGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTGGTAAGTTTTAAATACAGAAAAGTTAATGAGTGCTATTTTTCCTTGCTCCTACAGGTTAGAACAACTATAACACTCTCTTATTCGCAGGTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAGGCTAGCCTCCCCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTCACCCCCTCCTTCCCTGTGATTAGCCAAGACTCTCCTCGCCTAACAATGATATGTAAGGGTTAGACAAATGCTTGTAGGTTCCTATATTATTTTTCAGAGTGATACTTATTTCTTATTTATCTTTCCAAAGACTCTTTTATGGGAAGGGATGGAGTTGGTATAGCTGAGGGAAAAATTTTAAATTGGAATTAACACAGATAAAAAGGAAACTAATGGAAACATTAACTTGTGATGATTTTGTAACAGACAAGCAATATGCAGTACAATTTTAGCAACTTGAGGGGAGGTTTACATGATTAATCATACTTTAATTTCACCAGCTAGGGAAACATCCTTGCCCTCCTAAGACATTTGCGAAGAAACCAAATAAAAAACAACAATAAAAAAAATGAAAAGAAAGAAAACATTTGTAGTCAAAGCGCATCCACTGCTTCCCAATATGTTCACGTACAAAACATTGGTTTTTCTTATTTTATTGAACTAGGCAATAAAACACTGTTTGCTTGCATAATTAGTTCAAGTTAATTGACTGTTGTTCCTTGAGCGAATTTTCTAAGTAATGTTTGTTTTCTTTCTCTGGTGCTGTGTCTTGTTATCTACTGGGCGTGATTTCAGGTGTTCTGCAGTTCTTAATCAGTGTTTATACGTCTCCTGTACATGTGATGGTGCCTCATAACTTTGACAATTTTATGTCAAGCTTCAGTCTGAAGTGTGAAAATGTTGAACTTAAACTAGGCACTCTACCTTGTATTGAAATTTATTTCTCATTGTTATACATGATAATATTCATTTACTTTTTTATTTGTGGGTAGTTTTGCATCAGTTGTGCTTGTGTTTTCTCTTGCATGTCTATTTGTACATCTTCCTTAGCCATTTTGATGCATTCCTCTTGTGGCAGTGGTGTGGTTAATCAGCAGTTCATAGGTTGAACTTAAATTGGTGGATGTTTAGCAGCCAGACTTGTGAACCTAGAATTGTCTCTATGTGGATCTACATACTAGAGTAGTTTGAGTAGATACGAGTAGAATCTAACCAGTACAGGCTTGTTGTAAGGCTGCTGAGTTTGGCTCAAGGAGAGCTTCATAAATGGATTAAGTTTAGAAGCAAAACTCTAGCATGATAACTGATGAATATCAAATATAATTGAATGCATATAGATTGCAAGCCTGTCGGTTAAGTAGCACTATAAAGCTGTATGTGGCAAAGATTTGTTTCCAAGCCTATGCAAGGATTAAAGGGAAGGAATTGTAATTAGTTAAAGAGTAATTATAGTATACTTGATGATATTTCTTTACATATCTGATTTCTCAGAAAGAGTAGTTAATCTGGATATAACACAAGACTGAAACAATGTAAAGGGTAACAAAAGGCTCTCAGCATCTGAATGAATCCTCATTTGATTGCTGCCCCCCACCCCCCCCCCGTGTCATCTCGTTAAGCTATTTCTCATTTGTATTTGTTCTTTTCATTTAATAGGTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTT</genome_strand>
        <mrna_strand>CAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTCGAG.............................................................................GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTATAATGAAATATTACCATGATGATCTG.......................................................................................GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTGCCAATGGCTTTTTCAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGAGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTCAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266955" ref_strand="-" ref_description="SGN-E266955 [cLEI-7-F19]">
      <seq>ctttttgagggtgtaaaagtagtcttcaaagttggcttggctctactgaaatattgccatgatgatctggtaaagttgccatttgagaaactcatacatgctttgcgcaacttccctgaggatgccatgaatccagatatacttttaccaatggctttttcaatcaaggtttccaagagtttggtggaactgaagcaggaatatgaacagcaacgactgaaacctcctgaatccccagtcaaacagtaagatgtatcaaatgcaaaatacttttggagaaacaatcaacagcttttgtgcacaaacttggattctttagttctctgtttaaaaaactgtctcagctgatgtacataatcacattgatcagattacccgatccatacagttttagtacaaaatagtttattatttgaaggagaaggcacctcagtctttgccatgagggtcaattgtacaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="122288" stop="124945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122504" g_stop="122512" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122590" g_stop="122649" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="69" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122737" g_stop="122835" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="168" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124354" g_stop="124645" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="460" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="479"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266955" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266955" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122504" e_stop="122512"/>
          <exon e_start="122590" e_stop="122649"/>
          <exon e_start="122737" e_stop="122835"/>
          <exon e_start="124354" e_stop="124645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGAGGTCAGTAATCTATCATTATTATATCCACTCTCTGGTGCCTGGATTTACTGTTGAGCTTACCGAGTTAACTGTACCAGGGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTGGTAAGTTTTAAATACAGAAAAGTTAATGAGTGCTATTTTTCCTTGCTCCTACAGGTTAGAACAACTATAACACTCTCTTATTCGCAGGTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAGGCTAGCCTCCCCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTCACCCCCTCCTTCCCTGTGATTAGCCAAGACTCTCCTCGCCTAACAATGATATGTAAGGGTTAGACAAATGCTTGTAGGTTCCTATATTATTTTTCAGAGTGATACTTATTTCTTATTTATCTTTCCAAAGACTCTTTTATGGGAAGGGATGGAGTTGGTATAGCTGAGGGAAAAATTTTAAATTGGAATTAACACAGATAAAAAGGAAACTAATGGAAACATTAACTTGTGATGATTTTGTAACAGACAAGCAATATGCAGTACAATTTTAGCAACTTGAGGGGAGGTTTACATGATTAATCATACTTTAATTTCACCAGCTAGGGAAACATCCTTGCCCTCCTAAGACATTTGCGAAGAAACCAAATAAAAAACAACAATAAAAAAAATGAAAAGAAAGAAAACATTTGTAGTCAAAGCGCATCCACTGCTTCCCAATATGTTCACGTACAAAACATTGGTTTTTCTTATTTTATTGAACTAGGCAATAAAACACTGTTTGCTTGCATAATTAGTTCAAGTTAATTGACTGTTGTTCCTTGAGCGAATTTTCTAAGTAATGTTTGTTTTCTTTCTCTGGTGCTGTGTCTTGTTATCTACTGGGCGTGATTTCAGGTGTTCTGCAGTTCTTAATCAGTGTTTATACGTCTCCTGTACATGTGATGGTGCCTCATAACTTTGACAATTTTATGTCAAGCTTCAGTCTGAAGTGTGAAAATGTTGAACTTAAACTAGGCACTCTACCTTGTATTGAAATTTATTTCTCATTGTTATACATGATAATATTCATTTACTTTTTTATTTGTGGGTAGTTTTGCATCAGTTGTGCTTGTGTTTTCTCTTGCATGTCTATTTGTACATCTTCCTTAGCCATTTTGATGCATTCCTCTTGTGGCAGTGGTGTGGTTAATCAGCAGTTCATAGGTTGAACTTAAATTGGTGGATGTTTAGCAGCCAGACTTGTGAACCTAGAATTGTCTCTATGTGGATCTACATACTAGAGTAGTTTGAGTAGATACGAGTAGAATCTAACCAGTACAGGCTTGTTGTAAGGCTGCTGAGTTTGGCTCAAGGAGAGCTTCATAAATGGATTAAGTTTAGAAGCAAAACTCTAGCATGATAACTGATGAATATCAAATATAATTGAATGCATATAGATTGCAAGCCTGTCGGTTAAGTAGCACTATAAAGCTGTATGTGGCAAAGATTTGTTTCCAAGCCTATGCAAGGATTAAAGGGAAGGAATTGTAATTAGTTAAAGAGTAATTATAGTATACTTGATGATATTTCTTTACATATCTGATTTCTCAGAAAGAGTAGTTAATCTGGATATAACACAAGACTGAAACAATGTAAAGGGTAACAAAAGGCTCTCAGCATCTGAATGAATCCTCATTTGATTGCTGCCCCCCACCCCCCCCCCGTGTCATCTCGTTAAGCTATTTCTCATTTGTATTTGTTCTTTTCATTTAATAGGTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAA</genome_strand>
        <mrna_strand>CTTTTTGAG.............................................................................GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTG.......................................................................................GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTTTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266953" ref_strand="-" ref_description="SGN-E266953 [cLEI-7-F15]">
      <seq>ttttgagggtgtaaaagtagtcttcaaagttggcttggctctactgaaatattgccatgatgatctggtaaagttgccatttgagaaactcatacatgctttgcgcaacttccctgaggatgccatgaatccagatatacttttaccaatggctttttcaatcaaggtttccaagagtttggtggaactgaagcaggaatatgaacagcaacggctgaaacctcctgaatccccagtcaaacagtaagatgtatcaaatgcaaaatacttctggagaaacaatcatcagcttttgtgcacaaacttggattctttagttctctgtttaaaaaactgtctcagctgatgtacataatcacattgatcagattacccgatccatacagttttagtacaaaatagtttattatttgaaggagaaggcacctcagtctttgccatgagggtcaattgttcaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="122288" stop="124945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122506" g_stop="122512" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122590" g_stop="122649" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="67" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122737" g_stop="122835" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="166" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124354" g_stop="124645" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="458" r_length="292" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="477"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-E266953" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266953" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122506" e_stop="122512"/>
          <exon e_start="122590" e_stop="122649"/>
          <exon e_start="122737" e_stop="122835"/>
          <exon e_start="124354" e_stop="124645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGGTCAGTAATCTATCATTATTATATCCACTCTCTGGTGCCTGGATTTACTGTTGAGCTTACCGAGTTAACTGTACCAGGGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTGGTAAGTTTTAAATACAGAAAAGTTAATGAGTGCTATTTTTCCTTGCTCCTACAGGTTAGAACAACTATAACACTCTCTTATTCGCAGGTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAGGCTAGCCTCCCCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTCACCCCCTCCTTCCCTGTGATTAGCCAAGACTCTCCTCGCCTAACAATGATATGTAAGGGTTAGACAAATGCTTGTAGGTTCCTATATTATTTTTCAGAGTGATACTTATTTCTTATTTATCTTTCCAAAGACTCTTTTATGGGAAGGGATGGAGTTGGTATAGCTGAGGGAAAAATTTTAAATTGGAATTAACACAGATAAAAAGGAAACTAATGGAAACATTAACTTGTGATGATTTTGTAACAGACAAGCAATATGCAGTACAATTTTAGCAACTTGAGGGGAGGTTTACATGATTAATCATACTTTAATTTCACCAGCTAGGGAAACATCCTTGCCCTCCTAAGACATTTGCGAAGAAACCAAATAAAAAACAACAATAAAAAAAATGAAAAGAAAGAAAACATTTGTAGTCAAAGCGCATCCACTGCTTCCCAATATGTTCACGTACAAAACATTGGTTTTTCTTATTTTATTGAACTAGGCAATAAAACACTGTTTGCTTGCATAATTAGTTCAAGTTAATTGACTGTTGTTCCTTGAGCGAATTTTCTAAGTAATGTTTGTTTTCTTTCTCTGGTGCTGTGTCTTGTTATCTACTGGGCGTGATTTCAGGTGTTCTGCAGTTCTTAATCAGTGTTTATACGTCTCCTGTACATGTGATGGTGCCTCATAACTTTGACAATTTTATGTCAAGCTTCAGTCTGAAGTGTGAAAATGTTGAACTTAAACTAGGCACTCTACCTTGTATTGAAATTTATTTCTCATTGTTATACATGATAATATTCATTTACTTTTTTATTTGTGGGTAGTTTTGCATCAGTTGTGCTTGTGTTTTCTCTTGCATGTCTATTTGTACATCTTCCTTAGCCATTTTGATGCATTCCTCTTGTGGCAGTGGTGTGGTTAATCAGCAGTTCATAGGTTGAACTTAAATTGGTGGATGTTTAGCAGCCAGACTTGTGAACCTAGAATTGTCTCTATGTGGATCTACATACTAGAGTAGTTTGAGTAGATACGAGTAGAATCTAACCAGTACAGGCTTGTTGTAAGGCTGCTGAGTTTGGCTCAAGGAGAGCTTCATAAATGGATTAAGTTTAGAAGCAAAACTCTAGCATGATAACTGATGAATATCAAATATAATTGAATGCATATAGATTGCAAGCCTGTCGGTTAAGTAGCACTATAAAGCTGTATGTGGCAAAGATTTGTTTCCAAGCCTATGCAAGGATTAAAGGGAAGGAATTGTAATTAGTTAAAGAGTAATTATAGTATACTTGATGATATTTCTTTACATATCTGATTTCTCAGAAAGAGTAGTTAATCTGGATATAACACAAGACTGAAACAATGTAAAGGGTAACAAAAGGCTCTCAGCATCTGAATGAATCCTCATTTGATTGCTGCCCCCCACCCCCCCCCCGTGTCATCTCGTTAAGCTATTTCTCATTTGTATTTGTTCTTTTCATTTAATAGGTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAA</genome_strand>
        <mrna_strand>TTTTGAG.............................................................................GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTG.......................................................................................GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGGCTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCATCAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395309" ref_strand="+" ref_description="SGN-E395309 [TUS-43-M7](-)">
      <seq>aatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgccccccccgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtttacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaagggttctattctttcttaatatcttttatttgtatcttgtttttttcttctttattttggttctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactggaagcaatcaggggcgggggtttgtgtacagaagaatttcttgcttcggtattcaacattattcaagtagtattgtaatttattttcttctaaagtgaataccatggtttaaattctagcagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127228" stop="125505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126928" g_stop="126900" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125801" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="572" r_length="543" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E395309" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126928" e_stop="126900"/>
          <exon e_start="126343" e_stop="125801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAGAAACAAAATATGCA</genome_strand>
        <mrna_strand>AATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGCCCCCCCCGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTTTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355201" ref_strand="+" ref_description="SGN-E355201 [cTOS-18-J2]">
      <seq>tgctctgagatgtgttgatccagattctgacaagagaccaaagatgagccaagttgttcgtatgcttgaatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaaggggtctattctttcttaatatcttttatttggatcttggttttttcctctttattttgggtctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactggaagcaatcacgggcggggggttgtgtaccgaagaatttcttgcttcgggattcaacattattcaagtaggattggaaattattttcttctaaagtgataccctggttttaattctagcagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127296" stop="125505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126996" g_stop="126900" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125803" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="637" r_length="540" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E355201" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126996" e_stop="126900"/>
          <exon e_start="126343" e_stop="125803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAGAAACAAAATATG</genome_strand>
        <mrna_strand>TGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGGTCTATTCTTTCTTAATATCTTTTATTTGGATCTTGGTTTTTTCCTCTTTATTTTGGGTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCACGGGCGGGGGGTTGTGTACCGAAGAATTTCTTGCTTCGGGATTCAACATTATTCAAGTAGGATTGGAAATTATTTTCTTCTAAAGTG-ATACCCTGGTTTTAATTCTAGCAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539749" ref_strand="+" ref_description="SGN-E539749 [TUS-59-K17]">
      <seq>tgagccaagttgttcgtatgcttgaatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaagggttctattctttcttaatatcttttatttgtatcttgtttttttcttctttattttggttctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactggaagcaatcaggggcgggggtttgtgtacagaagaatttcttgcttcggtattcaacattattcaagtagtattgtaatttattttcttctaaagtgaataccatgggtttaaattctagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127252" stop="125507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126952" g_stop="126900" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125806" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="592" r_length="539" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E539749" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126952" e_stop="126900"/>
          <exon e_start="126343" e_stop="125806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCAT-GGTTTAAATTCTAGCAGAAACAAAAT</genome_strand>
        <mrna_strand>TGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGGTTTAAATTCTAGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543380" ref_strand="+" ref_description="SGN-E543380 [TUS-65-C17](-)">
      <seq>tgttgatccagattctgacaagagaccaaagatgagccaagttgttcgtatgcttgaatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaagggttctattctttcttaatatcttttatttgtatcttgtttttttcttctttattttggttctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactggaagcaatcaggggcgggggtttgtgtacagaagaatttcttgcttcggtattcaacattattcaagtagtattgtaatttattttcttctaaagtgaataccatggtttaaattctagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127284" stop="125507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126984" g_stop="126900" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125807" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="622" r_length="537" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E543380" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126984" e_stop="126900"/>
          <exon e_start="126343" e_stop="125807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAGAAACAAAA</genome_strand>
        <mrna_strand>TGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543381" ref_strand="+" ref_description="SGN-E543381 [TUS-65-C17]">
      <seq>tgttgatccagattctgacaagagaccaaagatgagccaagttgttcgtatgcttgaatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaagggttctattctttcttaatatcttttatttgtatcttgtttttttcttctttattttggttctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactggaagcaatcaggggcgggggtttgtgtacagaagaatttcttgcttcggtattcaacattattcaagtagtattgtaatttattttcttctaaagtgaataccatggtttaaattctagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127284" stop="125507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126984" g_stop="126900" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125807" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="622" r_length="537" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E543381" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126984" e_stop="126900"/>
          <exon e_start="126343" e_stop="125807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAGAAACAAAA</genome_strand>
        <mrna_strand>TGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539746" ref_strand="+" ref_description="SGN-E539746 [TUS-59-K17](-)">
      <seq>tgagccaagttgttcgtatgcttgaatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaagggttctattctttcttaatatcttttatttgtatcttgtttttttcttctttattttggttctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactggaagcaatcaggggcgggggtttgtgtacagaagaatttcttgcttcggtattcaacattattcaagtagtattgtaatttattttcttctaaagtgaataccatggtttaaattctagcaaaaaaaaaaaaaaaaaaactcgaggggggcccgtacccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127252" stop="125505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126952" g_stop="126900" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125808" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="589" r_length="536" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="600"/>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E539746" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126952" e_stop="126900"/>
          <exon e_start="126343" e_stop="125808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAGAAACAAA</genome_strand>
        <mrna_strand>TGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304114" ref_strand="+" ref_description="SGN-E304114 [cLEX-6-H16]">
      <seq>gttgatccagattctgacaagagaccaaacatgagccaagttgttcgtgtgcttgaattataggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagcaggactatgaactgtttctgctggtatatagatggtcagaagagattgactacttttcttctaccttcaagggtgctatgctgtcttaatatctcttatttgtatcatgtctttttcttcttcattatggatctttccttgtatgaaagtagatagggagtaaattgatgtggacttaatggtcatgtgactaaactggcagctatcaagggcggaggtttgtgtacagaaaaattgcatgcttgggtattcaacattattcaagtagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127283" stop="125565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126983" g_stop="126900" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125865" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="563" r_length="479" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E304114" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126983" e_stop="126900"/>
          <exon e_start="126343" e_stop="125865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTA</genome_strand>
        <mrna_strand>GTTGATCCAGATTCTGACAAGAGACCAAACATGAGCCAAGTTGTTCGTGTGCTTGAATTATAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGCAGGACTATGAACTGTTTCTGCTGGTATATAGATGGTCAGAAGAGATTGACTACTTTTCTTCTACCTTCAAGGGTGCTATGCTGTCTTAATATCTCTTATTTGTATCATGTCTTTTTCTTCTTCATTATGGATCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGATGTGGACTTAATGGTCATGTGACTAAACTGGCAGCTATCAAGGGCGGAGGTTTGTGTACAGAAAAATTGCATGCTTGGGTATTCAACATTATTCAAGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284690" ref_strand="+" ref_description="SGN-E284690 [cLES-3-B9]">
      <seq>gagccaagttgttcgtatgcttgaatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaagggttctattctttcttaatatcttttatttgtatcttggttttttcttctttattttgggtctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="127251" stop="125635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126951" g_stop="126900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126343" g_stop="125935" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="461" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E284690" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126951" e_stop="126900"/>
          <exon e_start="126343" e_stop="125935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGA</genome_strand>
        <mrna_strand>GAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGGTTTTTTCTTCTTTATTTTGGGTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211884" ref_strand="+" ref_description="SGN-E211884 [cLEC-66-C19]">
      <seq>agttgttcatcgagacataaaatcaagtaatatattgattgatgatgacttcaatgcgaaggtctctgattttggtctggccaaactgcttggtgctggtaaaagtcatatcacaactcgagtcatgggtacctttgggtatgtggctcctgaatatgcaaatactggtctcttgaatgaaaagagtgatgtttatagctttggggtagtgttgttagaatcgatcacaggaagagatcctgtggactatggccgtcctgcccaagaggtgaatcttgtcgattggttgaaaatgatggttggaagcaggcgctctgaggaagtagtagatccaaatattgaaactaggccaccaacaagagctctcaaaagagcccttctgactgctctgagatgtgttgatccagattctgacaagagaccaaagatgagccaagttgttcgtatgcttgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="128819" stop="126625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128519" g_stop="128382" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128204" g_stop="128075" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="268" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128074" i_stop="127113" i_length="962">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127112" g_stop="126925" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="456" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E211884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128519" e_stop="128382"/>
          <exon e_start="128204" e_stop="128075"/>
          <exon e_start="127112" e_stop="126925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGGGTTAGTTTCTTTCTTCTGCTCCTTTTGATTCCATTCCGACTTGCTTCACGTTCTGGTCTTCTAGACTTTACAATCTTCAACTTCTGGTGTCATGTTTTATTACTCTTAAGATATAAAAAGTTGAAACAGAAGTTAAGCAGTATTGTATGATTTCACACCATTACAAATATTTGACAGGTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAGGTTTGTTATCCTTCGTCCTTTAACTTTAAATCTAATTAGCACACTGATGTAAATATCTTATATGCATCTTCATTATTGAAAAAGCTGTAAAACTGATTGTGCCCAGATGTATGGCAGAAAAGATCTTTCTTAATACTCACCTTGCTGGTTTTCTGATATTTGTCTCATTGTCATTTTCTATTTAGTTTCCCTTGAATTTTCTCCTGATTACTTGGTCTTGATATATCATGTACCATAACCAATGTTCACATGCTATGAATCTTTGAGAAGGATATTCCAACTCACCTGATTCCAGCGATTGATCTTGGCTTAAAACATGCTCAATACTTCAGCCTTCTGCTGAATTATAGTTTAAGAGAATATCCCACGCAAAGCCTTACTTGTTCACTATTCATTACATTATCTGAAGAAAAAGCTAGTATTGGTAAATGGTAATGCTGCTATTTCTTAGTTTCTTTATGAGACAACATTTGGTTGGTTTTCATCTCCTTTCACCATGCCTTAATGAAATATATTTTGTACATATCAAGACCACATTCACTACAACTTAGCTGTCTAGTGTCCTAATCTGGTGCTTTGTGTGGTCAGTATGTATATCTTCCGTCTGTCCATTAATTGGTAATAAATAGTAATCTCATACCTCACGCCATCAAGCCCAAAGGAAAGGTGACTAGAAGCTGGTTAATATTTGAATTTTATGGTCTTTCACTACCAATGGCCCACAGTTTTGTATAATGACATGGATTTTAGGAGAATCACATCTGAATCTTTTCAACCTCGGTAAGAATTCTCACGAGAGCTTGAGTTCTACTGGAGGATTTGCTCCGTTTTTCATTTTAGCCTCTAAATTTTTATGTTGATGTCCTTTTCAATCTCCCTCGCCACTTCTTTTATACCAATATCCTACTCTGGTTTTTGCTCTACAAACAGACTCTTAAAGTATTAGACTTTTGCGGTTGCAGGTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACTAGGCCACCAACAAGAGCTCTCAAAAGAGCCCTTCTGACTGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATC</genome_strand>
        <mrna_strand>AGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG.................................................................................................................................................................................GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACTAGGCCACCAACAAGAGCTCTCAAAAGAGCCCTTCTGACTGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273092" ref_strand="+" ref_description="SGN-E273092 [cLEM-24-G3]">
      <seq>agccattggccacgtgccgtcacaaaaatttggtccgccttctaagatacctgcattgaaggaactcacaggatgctggtttaccgagtatgtcaaccaatggcaatttggaacagtggcttcatggagctatgcgacaccacgggtatctcacttgggaggctaggatgaaggttctccttgggaccagctaaagctcttgcgtatttgcatgagaatattgagcccaaagttgttcatcgagacataaaatcaagtaatatattgattgatgatgacttcaatgcgaaggtctctgattttggtctggccaaactgcttggtgctggtaaaagtcatatcacaactcgagtcatgggtacctttgggtatgtggctcctgaatatgcaaatactggtctcttgaatgaaaagagtgatgtttatagctttggggtagtgttgttagaatcgatcacaggaagagatcctgtggactatggccgtcctgcccaagaggtgaatcttgtcgattggttgaaaatgatggttggaagcaggcgctctgaggaagtagtagatccaaatattgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129288" stop="126735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128988" g_stop="128920" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168">
            <donor d_prob="0.857" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128751" g_stop="128629" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="197" r_length="126" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128552" g_stop="128382" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="368" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128204" g_stop="128075" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="498" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128074" i_stop="127113" i_length="962">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127112" g_stop="127035" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="576" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E273092" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128988" e_stop="128920"/>
          <exon e_start="128751" e_stop="128629"/>
          <exon e_start="128552" e_stop="128382"/>
          <exon e_start="128204" e_stop="128075"/>
          <exon e_start="127112" e_stop="127035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTGGCCACGTG-CGTCACAAAAATTTGGTCCGCCTTCTAGGATA-CTGCATTGAAGGAACTCACAGGTATTTCCCTATATGGAAGTCCATGATAGTCTTATACCATTTCTCGGACACGAAAATGAAGCTTTGGATTGTTCAATTACTTTCATGCGCATGTGAAGTTATTGAATGAGTATTAAGTTGTTTCTTGTTTAGCATTTGAAAATGCTCTGTTCTAATTCATGATCTCAGGATGCTGGTTTAC-GAGTATGTCAA-CAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGA-CAGCTAAAGCGTAAGCTCATTCAGCTAAATGCTTAAATCTATTTTGGAATAATACAGATCTCTTGATGTGCTATCTTTTCTTGCAGTCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGGGTTAGTTTCTTTCTTCTGCTCCTTTTGATTCCATTCCGACTTGCTTCACGTTCTGGTCTTCTAGACTTTACAATCTTCAACTTCTGGTGTCATGTTTTATTACTCTTAAGATATAAAAAGTTGAAACAGAAGTTAAGCAGTATTGTATGATTTCACACCATTACAAATATTTGACAGGTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAGGTTTGTTATCCTTCGTCCTTTAACTTTAAATCTAATTAGCACACTGATGTAAATATCTTATATGCATCTTCATTATTGAAAAAGCTGTAAAACTGATTGTGCCCAGATGTATGGCAGAAAAGATCTTTCTTAATACTCACCTTGCTGGTTTTCTGATATTTGTCTCATTGTCATTTTCTATTTAGTTTCCCTTGAATTTTCTCCTGATTACTTGGTCTTGATATATCATGTACCATAACCAATGTTCACATGCTATGAATCTTTGAGAAGGATATTCCAACTCACCTGATTCCAGCGATTGATCTTGGCTTAAAACATGCTCAATACTTCAGCCTTCTGCTGAATTATAGTTTAAGAGAATATCCCACGCAAAGCCTTACTTGTTCACTATTCATTACATTATCTGAAGAAAAAGCTAGTATTGGTAAATGGTAATGCTGCTATTTCTTAGTTTCTTTATGAGACAACATTTGGTTGGTTTTCATCTCCTTTCACCATGCCTTAATGAAATATATTTTGTACATATCAAGACCACATTCACTACAACTTAGCTGTCTAGTGTCCTAATCTGGTGCTTTGTGTGGTCAGTATGTATATCTTCCGTCTGTCCATTAATTGGTAATAAATAGTAATCTCATACCTCACGCCATCAAGCCCAAAGGAAAGGTGACTAGAAGCTGGTTAATATTTGAATTTTATGGTCTTTCACTACCAATGGCCCACAGTTTTGTATAATGACATGGATTTTAGGAGAATCACATCTGAATCTTTTCAACCTCGGTAAGAATTCTCACGAGAGCTTGAGTTCTACTGGAGGATTTGCTCCGTTTTTCATTTTAGCCTCTAAATTTTTATGTTGATGTCCTTTTCAATCTCCCTCGCCACTTCTTTTATACCAATATCCTACTCTGGTTTTTGCTCTACAAACAGACTCTTAAAGTATTAGACTTTTGCGGTTGCAGGTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACT</genome_strand>
        <mrna_strand>AGCCATTGGCCACGTGCCGTCACAAAAATTTGGTCCGCCTTCTAAGATACCTGCATTGAAGGAACTCACAG........................................................................................................................................................................GATGCTGGTTTACCGAGTATGTCAACCAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACCAGCTAAAGC............................................................................TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG.................................................................................................................................................................................GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551404" ref_strand="+" ref_description="SGN-E551404 [TUS-11-N3]">
      <seq>aaccattggcccgtgcgtcacaaaatttggtccgccttctagatctgcattgaaggaactcacaggatgctggtttacgagtatgtgacgatggcaatttggaacagtggcttcatggagctatgcgacaccacgggtatctcacttgggaggctaggatgaagttctccttgggacagctaaagctcttgcgtatttgcatgagaatattgagcccaaagttgttcatcgagacataaaatcaagtaatatattgattgatgatgacttcaatgcgaagtctctgattttggtctggccaaactgcttggtgctggtaaaagtcatatcacaactcgagtcatgggtacctttgggtatgtggctcctgaatatgcaaatactggtctcttgaatgaaaagagtgatgtttatagctttggggtagtgttgttagaatcgatcacaggaagagatcctgtggactatggccgtcctgcccaagaggtgaatcttgtcgattggttgaaaatgatggttggaagcaggcgctctgaggaagtagtagatccaaatattgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129289" stop="126736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128988" g_stop="128920" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168">
            <donor d_prob="0.857" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128751" g_stop="128629" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="186" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128552" g_stop="128382" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="356" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128204" g_stop="128075" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="486" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128074" i_stop="127113" i_length="962">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127112" g_stop="127036" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="563" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E551404" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128988" e_stop="128920"/>
          <exon e_start="128751" e_stop="128629"/>
          <exon e_start="128552" e_stop="128382"/>
          <exon e_start="128204" e_stop="128075"/>
          <exon e_start="127112" e_stop="127036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAGGTATTTCCCTATATGGAAGTCCATGATAGTCTTATACCATTTCTCGGACACGAAAATGAAGCTTTGGATTGTTCAATTACTTTCATGCGCATGTGAAGTTATTGAATGAGTATTAAGTTGTTTCTTGTTTAGCATTTGAAAATGCTCTGTTCTAATTCATGATCTCAGGATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGCGTAAGCTCATTCAGCTAAATGCTTAAATCTATTTTGGAATAATACAGATCTCTTGATGTGCTATCTTTTCTTGCAGTCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGGGTTAGTTTCTTTCTTCTGCTCCTTTTGATTCCATTCCGACTTGCTTCACGTTCTGGTCTTCTAGACTTTACAATCTTCAACTTCTGGTGTCATGTTTTATTACTCTTAAGATATAAAAAGTTGAAACAGAAGTTAAGCAGTATTGTATGATTTCACACCATTACAAATATTTGACAGGTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAGGTTTGTTATCCTTCGTCCTTTAACTTTAAATCTAATTAGCACACTGATGTAAATATCTTATATGCATCTTCATTATTGAAAAAGCTGTAAAACTGATTGTGCCCAGATGTATGGCAGAAAAGATCTTTCTTAATACTCACCTTGCTGGTTTTCTGATATTTGTCTCATTGTCATTTTCTATTTAGTTTCCCTTGAATTTTCTCCTGATTACTTGGTCTTGATATATCATGTACCATAACCAATGTTCACATGCTATGAATCTTTGAGAAGGATATTCCAACTCACCTGATTCCAGCGATTGATCTTGGCTTAAAACATGCTCAATACTTCAGCCTTCTGCTGAATTATAGTTTAAGAGAATATCCCACGCAAAGCCTTACTTGTTCACTATTCATTACATTATCTGAAGAAAAAGCTAGTATTGGTAAATGGTAATGCTGCTATTTCTTAGTTTCTTTATGAGACAACATTTGGTTGGTTTTCATCTCCTTTCACCATGCCTTAATGAAATATATTTTGTACATATCAAGACCACATTCACTACAACTTAGCTGTCTAGTGTCCTAATCTGGTGCTTTGTGTGGTCAGTATGTATATCTTCCGTCTGTCCATTAATTGGTAATAAATAGTAATCTCATACCTCACGCCATCAAGCCCAAAGGAAAGGTGACTAGAAGCTGGTTAATATTTGAATTTTATGGTCTTTCACTACCAATGGCCCACAGTTTTGTATAATGACATGGATTTTAGGAGAATCACATCTGAATCTTTTCAACCTCGGTAAGAATTCTCACGAGAGCTTGAGTTCTACTGGAGGATTTGCTCCGTTTTTCATTTTAGCCTCTAAATTTTTATGTTGATGTCCTTTTCAATCTCCCTCGCCACTTCTTTTATACCAATATCCTACTCTGGTTTTTGCTCTACAAACAGACTCTTAAAGTATTAGACTTTTGCGGTTGCAGGTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAAC</genome_strand>
        <mrna_strand>AACCATTGGCC-CGTGCGTCAC-AAAATTTGGTCCGCCTTCTA-GAT-CTGCATTGAAGGAACTCACAG........................................................................................................................................................................GATGCTGGTTTACGAGTATGT-GACGATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAA-GTTCTCCTTGGGACAGCTAAAGC............................................................................TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAA-GTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG.................................................................................................................................................................................GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688306" ref_strand="+" ref_description="SGN-E688306 [t3_tus_11_n03]">
      <seq>aaccattggcccgtgcgtcacaaaatttggtccgccttctagatctgcattgaaggaactcacaggatgctggtttacgagtggtcaacaatggcaatttggaacagtggcttcatggagctatgcgacaccacgggtatctcacttgggaggctaggatgaaggttctccttgggacagctaaagctcttgcgtatttgcatgagaatattgagcccaaagttgttcatcgagacataaaatcaagtaatatattgattgatgatgacttcaatgcgaaggtctctgattttggtctggccaaactgcttggtgctggtaaaagtcatatcacaactcgagtcatgggtacctttgggtatgtggctcctgaatatgcaaatactggtctcttgaatgaaaagagtgatgtttatagctttggggtagtgttgttagaatcgatcacaggaagagatcctgtggactatggccgtcctgcccaagaggtgaatcttgtcgattggttgaaaatgatggttggaagcaggcgctctgaggaagtagtagatccaaatattgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129289" stop="126736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128988" g_stop="128920" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168">
            <donor d_prob="0.857" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128751" g_stop="128629" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="187" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128552" g_stop="128382" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="358" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128204" g_stop="128075" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="488" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128074" i_stop="127113" i_length="962">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127112" g_stop="127036" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="565" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E688306" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128988" e_stop="128920"/>
          <exon e_start="128751" e_stop="128629"/>
          <exon e_start="128552" e_stop="128382"/>
          <exon e_start="128204" e_stop="128075"/>
          <exon e_start="127112" e_stop="127036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAGGTATTTCCCTATATGGAAGTCCATGATAGTCTTATACCATTTCTCGGACACGAAAATGAAGCTTTGGATTGTTCAATTACTTTCATGCGCATGTGAAGTTATTGAATGAGTATTAAGTTGTTTCTTGTTTAGCATTTGAAAATGCTCTGTTCTAATTCATGATCTCAGGATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGCGTAAGCTCATTCAGCTAAATGCTTAAATCTATTTTGGAATAATACAGATCTCTTGATGTGCTATCTTTTCTTGCAGTCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGGGTTAGTTTCTTTCTTCTGCTCCTTTTGATTCCATTCCGACTTGCTTCACGTTCTGGTCTTCTAGACTTTACAATCTTCAACTTCTGGTGTCATGTTTTATTACTCTTAAGATATAAAAAGTTGAAACAGAAGTTAAGCAGTATTGTATGATTTCACACCATTACAAATATTTGACAGGTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAGGTTTGTTATCCTTCGTCCTTTAACTTTAAATCTAATTAGCACACTGATGTAAATATCTTATATGCATCTTCATTATTGAAAAAGCTGTAAAACTGATTGTGCCCAGATGTATGGCAGAAAAGATCTTTCTTAATACTCACCTTGCTGGTTTTCTGATATTTGTCTCATTGTCATTTTCTATTTAGTTTCCCTTGAATTTTCTCCTGATTACTTGGTCTTGATATATCATGTACCATAACCAATGTTCACATGCTATGAATCTTTGAGAAGGATATTCCAACTCACCTGATTCCAGCGATTGATCTTGGCTTAAAACATGCTCAATACTTCAGCCTTCTGCTGAATTATAGTTTAAGAGAATATCCCACGCAAAGCCTTACTTGTTCACTATTCATTACATTATCTGAAGAAAAAGCTAGTATTGGTAAATGGTAATGCTGCTATTTCTTAGTTTCTTTATGAGACAACATTTGGTTGGTTTTCATCTCCTTTCACCATGCCTTAATGAAATATATTTTGTACATATCAAGACCACATTCACTACAACTTAGCTGTCTAGTGTCCTAATCTGGTGCTTTGTGTGGTCAGTATGTATATCTTCCGTCTGTCCATTAATTGGTAATAAATAGTAATCTCATACCTCACGCCATCAAGCCCAAAGGAAAGGTGACTAGAAGCTGGTTAATATTTGAATTTTATGGTCTTTCACTACCAATGGCCCACAGTTTTGTATAATGACATGGATTTTAGGAGAATCACATCTGAATCTTTTCAACCTCGGTAAGAATTCTCACGAGAGCTTGAGTTCTACTGGAGGATTTGCTCCGTTTTTCATTTTAGCCTCTAAATTTTTATGTTGATGTCCTTTTCAATCTCCCTCGCCACTTCTTTTATACCAATATCCTACTCTGGTTTTTGCTCTACAAACAGACTCTTAAAGTATTAGACTTTTGCGGTTGCAGGTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAAC</genome_strand>
        <mrna_strand>AACCATTGGCC-CGTGCGTCAC-AAAATTTGGTCCGCCTTCTA-GAT-CTGCATTGAAGGAACTCACAG........................................................................................................................................................................GATGCTGGTTTACGAGT-GGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGC............................................................................TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG.................................................................................................................................................................................GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395310" ref_strand="+" ref_description="SGN-E395310 [TUS-43-M7]">
      <seq>atatggcattgtctaccgggggaatttgattaatggaacacctgtagctattaagaagctcctcaacaatctaggccaagctgagaaagagttccaagtggaggttgaagccattggccacgtgcgtcacaaaaatttggtccgccttctaggatactgcattgaaggaactcacaggatgctggtttacgagtatgtcaacaatggcaatttggaacagtggcttcatggagctatgcgacaccacgggtatctcacttgggaggctaggatgaaggttctccttgggacagctaaagctcttgcgtatttgcatgagaatattgagcccaaagttgttcatcgagacataaaatcaagtaatatattgattgatgatgacttcaatgcgaaggtctctgattttggtctggccgagctgcttggtgctggtaaaagtcatatcacaactcgagtcatgggtacctttgggtatgtggctcctgaatatgcaaatactggtctcttgaatgaaaagagtgatgtttatagctttggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129487" stop="127836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129187" g_stop="129116" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129115" i_stop="129025" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129024" g_stop="128920" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="177" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128751" g_stop="128629" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="300" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128552" g_stop="128382" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="471" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128204" g_stop="128136" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="540" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E395310" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129187" e_stop="129116"/>
          <exon e_start="129024" e_stop="128920"/>
          <exon e_start="128751" e_stop="128629"/>
          <exon e_start="128552" e_stop="128382"/>
          <exon e_start="128204" e_stop="128136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCTGTGAGTTGATAAAATCAAATTTAATGCTTTCCTTACTGGTCCTTTTGTTTTAGTTGCCGGCTTGAGTTTGAATTTAAAATCTTTGTCCCAGAGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAGGTATTTCCCTATATGGAAGTCCATGATAGTCTTATACCATTTCTCGGACACGAAAATGAAGCTTTGGATTGTTCAATTACTTTCATGCGCATGTGAAGTTATTGAATGAGTATTAAGTTGTTTCTTGTTTAGCATTTGAAAATGCTCTGTTCTAATTCATGATCTCAGGATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGCGTAAGCTCATTCAGCTAAATGCTTAAATCTATTTTGGAATAATACAGATCTCTTGATGTGCTATCTTTTCTTGCAGTCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGGGTTAGTTTCTTTCTTCTGCTCCTTTTGATTCCATTCCGACTTGCTTCACGTTCTGGTCTTCTAGACTTTACAATCTTCAACTTCTGGTGTCATGTTTTATTACTCTTAAGATATAAAAAGTTGAAACAGAAGTTAAGCAGTATTGTATGATTTCACACCATTACAAATATTTGACAGGTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGT</genome_strand>
        <mrna_strand>ATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCT...........................................................................................AGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAG........................................................................................................................................................................GATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGC............................................................................TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCGAGCTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG.................................................................................................................................................................................GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201212" ref_strand="+" ref_description="SGN-E201212 [cLEC-10-M21]">
      <seq>tatggcattgtctaccgggggaatttgattaatggaacacctgtagctattaagaagctcctcaacaatctaggccaagctgagaaagagttccaagtggaggttgaagccattggccacgtgcgtcacaaaaatttggtccgccttctaggatactgcattgaaggaactcacaggatgctggtttacgagtatgtcaacaatggcaatttggaacagtggcttcatggagctatgcgacaccacgggtatctcacttgggaggctaggatgaaggttctccttgggacagctaaagctcttgcgtatttgcatgagaatattgagcccaaagttgttcatcgagacataaaatcaagtaatatattgattgatgatgacttcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129486" stop="128163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129186" g_stop="129116" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129115" i_stop="129025" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129024" g_stop="128920" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="176" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128751" g_stop="128629" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="299" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128552" g_stop="128463" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="389" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E201212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129186" e_stop="129116"/>
          <exon e_start="129024" e_stop="128920"/>
          <exon e_start="128751" e_stop="128629"/>
          <exon e_start="128552" e_stop="128463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCTGTGAGTTGATAAAATCAAATTTAATGCTTTCCTTACTGGTCCTTTTGTTTTAGTTGCCGGCTTGAGTTTGAATTTAAAATCTTTGTCCCAGAGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAGGTATTTCCCTATATGGAAGTCCATGATAGTCTTATACCATTTCTCGGACACGAAAATGAAGCTTTGGATTGTTCAATTACTTTCATGCGCATGTGAAGTTATTGAATGAGTATTAAGTTGTTTCTTGTTTAGCATTTGAAAATGCTCTGTTCTAATTCATGATCTCAGGATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGCGTAAGCTCATTCAGCTAAATGCTTAAATCTATTTTGGAATAATACAGATCTCTTGATGTGCTATCTTTTCTTGCAGTCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGC</genome_strand>
        <mrna_strand>TATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCT...........................................................................................AGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAG........................................................................................................................................................................GATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGC............................................................................TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325191" ref_strand="+" ref_description="SGN-E325191 [cTOC-13-L18]">
      <seq>tccaataactgctccttgggcgctaagtggatttcctgaggtttctcacttcgcttggggccactggtttacattgagagatcttgagcttgcaacaggccggttttcaaaggagaatattctcggtgagggtggatatggcatagtctaccgggggaatttgattaatggaacacctgttgctattaagaagctcctcaacaatctaggccaagctgagaaagagttccaagtggaggttgaagccattggccacgtgcgtcacaaaaatttggtccgccttctaggatactgcattgaaggaactcacaggatgctggtttacgagtatgtcaacaatggcaatttggaacagcggcttcatggagctatgcgacaccacgggtatctcacttgggaggctaggatgaaggttctccttgggacagctaaagctcttgcgtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129602" stop="128329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129322" g_stop="129116" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129115" i_stop="129025" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129024" g_stop="128920" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="312" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128751" g_stop="128629" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="435" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128552" g_stop="128540" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="448" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E325191" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129322" e_stop="129116"/>
          <exon e_start="129024" e_stop="128920"/>
          <exon e_start="128751" e_stop="128629"/>
          <exon e_start="128552" e_stop="128540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCTGTGAGTTGATAAAATCAAATTTAATGCTTTCCTTACTGGTCCTTTTGTTTTAGTTGCCGGCTTGAGTTTGAATTTAAAATCTTTGTCCCAGAGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAGGTATTTCCCTATATGGAAGTCCATGATAGTCTTATACCATTTCTCGGACACGAAAATGAAGCTTTGGATTGTTCAATTACTTTCATGCGCATGTGAAGTTATTGAATGAGTATTAAGTTGTTTCTTGTTTAGCATTTGAAAATGCTCTGTTCTAATTCATGATCTCAGGATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGCGTAAGCTCATTCAGCTAAATGCTTAAATCTATTTTGGAATAATACAGATCTCTTGATGTGCTATCTTTTCTTGCAGTCTTGCGTATTTG</genome_strand>
        <mrna_strand>TCCAATAACTGCTCCTTGGGCGCTAAGTGGATTTCCTGAGGTTTCTCACTTCGCTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATAGTCTACCGGGGGAATTTGATTAATGGAACACCTGTTGCTATTAAGAAGCTCCTCAACAATCT...........................................................................................AGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAG........................................................................................................................................................................GATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGCGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGC............................................................................TCTTGCGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204018" ref_strand="+" ref_description="SGN-E204018 [cLEC-22-O17]">
      <seq>gacaaggaaggttgtggatcgcaatcaggagaagaagggagttcatgcaaaagtgcaatgtataaagcttataattcacatccaataactgctccttctcctctaactggattacctgagttttctcacttgggttggggccactggtttacattgagagatcttgagcttgcaacatgccggttttcaaaggagaatattctcggtgagggtggatattgcattgtctaccgggggaatttgattaatggaacacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129702" stop="128844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129402" g_stop="129144" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-E204018" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129402" e_stop="129144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGGAAGGTTGTGGATCGCAATCAGGAGAAGAAGGGAGTTCATGCAAAAGTGCAATGTATAAAGCTTATAATTCACATCCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTG</genome_strand>
        <mrna_strand>GACAAGGAAGGTTGTGGATCGCAATCAGGAGAAGAAGGGAGTTCATGCAAAAGTGCAATGTATAAAGCTTATAATTCACATCCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACATGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATTGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>588</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6807" PGL_stop="7293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6807" e_stop="7056"/>
            <exon e_start="7142" e_stop="7293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6807" e_stop="7056" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.948">
            <gDNA_intron_boundary i_start="7057" i_stop="7141" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="7142" e_stop="7293" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6807" stop="7056"/>
              <exon start="7142" stop="7293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTCACTTTTTCTGAAGAGTTAGGCATGCAGACCTCAGCAAGGTAGCCAAGGTTTCAGTTCACTTATGTAGGTTACAAGTATTTGATCCTAATCCTCGCCCTCTTCATTTTTCCCCTTCACGTAATAGATATCCTAAAGGCTATGGGATTTTAGGAGATGTTGTACACAGCCACATCTTCCAGACAGTGGCCTTGCTTGCTATGGAGCCGCCTGTCACCCTTGATGGTGAAGATGTTCGTTATGAGAAA : GTTAAGGTTTTGAAATCAATTCGAAAGTTGGAATCATCTGATGTAATTCTTGGGCATAGTGAAGCTGATTCCGGAAGTAACTTCAAGGATATGGAAAACCTTATGCCCACATATTTTGGTGCTGCTTTACACATCGATAACGCACGGTGGGA</gDNA_template>
            <first_frame> R  S  L  F  L  K  S  *  A  C  R  P  Q  Q  G  S  Q  G  F  S  S  L  M  *  V  T  S  I  *  S  *  S  S  P  S  S  F  F  P  F  T  *  *  I  S  *  R  L  W  D  F  R  R  C  C  T  Q  P  H  L  P  D  S  G  L  A  C  Y  G  A  A  C  H  P  *  W  *  R  C  S  L  *  E   : S  *  G  F  E  I  N  S  K  V  G  I  I  *  C  N  S  W  A  *  *  S  *  F  R  K  *  L  Q  G  Y  G  K  P  Y  A  H  I  F  W  C  C  F  T  H  R  *  R  T  V  G </first_frame>
            <second_frame>  G  H  F  F  *  R  V  R  H  A  D  L  S  K  V  A  K  V  S  V  H  L  C  R  L  Q  V  F  D  P  N  P  R  P  L  H  F  S  P  S  R  N  R  Y  P  K  G  Y  G  I  L  G  D  V  V  H  S  H  I  F  Q  T  V  A  L  L  A  M  E  P  P  V  T  L  D  G  E  D  V  R  Y  E  K  :  V  K  V  L  K  S  I  R  K  L  E  S  S  D  V  I  L  G  H  S  E  A  D  S  G  S  N  F  K  D  M  E  N  L  M  P  T  Y  F  G  A  A  L  H  I  D  N  A  R  W   </second_frame>
            <third_frame>   V  T  F  S  E  E  L  G  M  Q  T  S  A  R  *  P  R  F  Q  F  T  Y  V  G  Y  K  Y  L  I  L  I  L  A  L  F  I  F  P  L  H  V  I  D  I  L  K  A  M  G  F  *  E  M  L  Y  T  A  T  S  S  R  Q  W  P  C  L  L  W  S  R  L  S  P  L  M  V  K  M  F  V  M  R  K :   L  R  F  *  N  Q  F  E  S  W  N  H  L  M  *  F  L  G  I  V  K  L  I  P  E  V  T  S  R  I  W  K  T  L  C  P  H  I  L  V  L  L  Y  T  S  I  T  H  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6823" stop="7056"/>
                    <exon start="7142" stop="7291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVRHADLSKVAKVSVHLCRLQVFDPNPRPLHFSPSRNRYPKGYGILGDVVHSHIFQTVALLAMEPPVTLDGEDVRYEKVKVLKSIRKLESSDVILGHSEADSGSNFKDMENLMPTYFGAALHIDNARW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7670" PGL_stop="8351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7670" e_stop="7814"/>
            <exon e_start="7919" e_stop="8351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7670" e_stop="7814" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7815" i_stop="7918" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="7919" e_stop="8351" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7670" stop="7814"/>
              <exon start="7919" stop="8351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGGCATAAGCAAGATCTTGTCACTAATGAGCTGATTCTGCGTGATGTGCCTGATGAGGCCATACTCATCAGAATCAATAACAAAATTCCAGGATTAGGCATGAACTTGGAGGCTTCGGAATTGAACTTGCTTTATAAAGACAA : GTACAATGTTGATGTAACTGATTCGTATGAACAACTTCTTCATGATGTAATAGATGGAGACAACCATCTATTTATGAGAAGCGATGAGGTTGAAGCTGCATGGAACATTTTATCTCCAGTTTTAAGTGAGTTAGACAATAATAATGCGACAATTGAGCATTACGAGTTTGGTAGCAAGGGTCCAGATAAAGCCGGTAATCTCTGGGCTAAACATGGAGTCAAGTGGTTGGATGATTAGTGAATTTCACAGTTATACATCATACAAACACTGAAATTCCTAAAGAAGGAATTATTAGAAATCCACTCTCCATACTTATCTTAGTGATCATTGATTGAGATGGAATCATTGTGAGAAAATTTGCACACCTGTTACACACTACAGAAAAAGTTAAGACTTTAGATTAATGAGATTGATGGCACTAGCTTTTGAAAG</gDNA_template>
            <first_frame> E  G  I  S  K  I  L  S  L  M  S  *  F  C  V  M  C  L  M  R  P  Y  S  S  E  S  I  T  K  F  Q  D  *  A  *  T  W  R  L  R  N  *  T  C  F  I  K  T   : S  T  M  L  M  *  L  I  R  M  N  N  F  F  M  M  *  *  M  E  T  T  I  Y  L  *  E  A  M  R  L  K  L  H  G  T  F  Y  L  Q  F  *  V  S  *  T  I  I  M  R  Q  L  S  I  T  S  L  V  A  R  V  Q  I  K  P  V  I  S  G  L  N  M  E  S  S  G  W  M  I  S  E  F  H  S  Y  T  S  Y  K  H  *  N  S  *  R  R  N  Y  *  K  S  T  L  H  T  Y  L  S  D  H  *  L  R  W  N  H  C  E  K  I  C  T  P  V  T  H  Y  R  K  S  *  D  F  R  L  M  R  L  M  A  L  A  F  E   </first_frame>
            <second_frame>  R  A  *  A  R  S  C  H  *  *  A  D  S  A  *  C  A  *  *  G  H  T  H  Q  N  Q  *  Q  N  S  R  I  R  H  E  L  G  G  F  G  I  E  L  A  L  *  R  Q  :  V  Q  C  *  C  N  *  F  V  *  T  T  S  S  *  C  N  R  W  R  Q  P  S  I  Y  E  K  R  *  G  *  S  C  M  E  H  F  I  S  S  F  K  *  V  R  Q  *  *  C  D  N  *  A  L  R  V  W  *  Q  G  S  R  *  S  R  *  S  L  G  *  T  W  S  Q  V  V  G  *  L  V  N  F  T  V  I  H  H  T  N  T  E  I  P  K  E  G  I  I  R  N  P  L  S  I  L  I  L  V  I  I  D  *  D  G  I  I  V  R  K  F  A  H  L  L  H  T  T  E  K  V  K  T  L  D  *  *  D  *  W  H  *  L  L  K  </second_frame>
            <third_frame>   G  H  K  Q  D  L  V  T  N  E  L  I  L  R  D  V  P  D  E  A  I  L  I  R  I  N  N  K  I  P  G  L  G  M  N  L  E  A  S  E  L  N  L  L  Y  K  D  K :   Y  N  V  D  V  T  D  S  Y  E  Q  L  L  H  D  V  I  D  G  D  N  H  L  F  M  R  S  D  E  V  E  A  A  W  N  I  L  S  P  V  L  S  E  L  D  N  N  N  A  T  I  E  H  Y  E  F  G  S  K  G  P  D  K  A  G  N  L  W  A  K  H  G  V  K  W  L  D  D  *  *  I  S  Q  L  Y  I  I  Q  T  L  K  F  L  K  K  E  L  L  E  I  H  S  P  Y  L  S  *  *  S  L  I  E  M  E  S  L  *  E  N  L  H  T  C  Y  T  L  Q  K  K  L  R  L  *  I  N  E  I  D  G  T  S  F  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7672" stop="7814"/>
                    <exon start="7919" stop="8156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHKQDLVTNELILRDVPDEAILIRINNKIPGLGMNLEASELNLLYKDKYNVDVTDSYEQLLHDVIDGDNHLFMRSDEVEAAWNILSPVLSELDNNNATIEHYEFGSKGPDKAGNLWAKHGVKWLDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15529" PGL_stop="14068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15529" e_stop="15515"/>
            <exon e_start="15264" e_stop="14994"/>
            <exon e_start="14549" e_stop="14068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15529" e_stop="15515" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.929">
            <gDNA_intron_boundary i_start="15514" i_stop="15265" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15264" e_stop="14994" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14993" i_stop="14550" i_length="444"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="14549" e_stop="14068" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15529" stop="15515"/>
              <exon start="15264" stop="14994"/>
              <exon start="14549" stop="14068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15262" stop="14994"/>
              <exon start="14549" stop="14247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15262" stop="14994"/>
              <exon start="14549" stop="14408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAATGCAATTCAG : GTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATG : GCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCAAGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAATTTGGAAAAATAGAAAAAATGATTGGTTATAAGAAAGAGGCCAGGTAAACTTTTTGCTCTTAGTTTTGAAGTCACGATCCCCTTTTCAGTCCAGTTTTCCCTGTTATTTTAGGCATCTATAATGTATTAATTAATGTTGTAAGCAAGTCTTATGATATTAATTATTAAACCCATTAAGT</gDNA_template>
            <first_frame> R  N  A  I  Q  :  V  I  Y  S  Q  G  G  R  K  F  W  V  H  N  T  G  P  L  G  C  L  P  Q  K  L  T  L  V  Q  K  V  S  S  D  L  D  P  H  G  C  L  A  N  Y  N  S  A  A  K  L  F  N  E  G  L  R  H  L  L  Q  E  L  R  S  E  M  K  D  A  T  M  V  Y  V  D  I  Y  A  I  K  Y  D  L  I  A  N  S  S  S  Y   : G  F  S  N  P  L  M  A  C  C  G  Y  G  G  P  P  Y  N  Y  R  K  G  V  T  C  G  Q  H  D  Y  Q  V  C  S  E  G  S  E  F  I  S  W  D  G  V  H  Y  T  E  A  A  N  R  V  I  A  S  K  I  L  S  M  D  Y  S  T  P  R  I  G  F  D  F  F  C  H  *  L  S  F  A  R  I  K  C  K  H  E  L  I  Y  V  A  S  E  Y  Y  E  K  Y  L  I  W  K  N  R  K  N  D  W  L  *  E  R  G  Q  V  N  F  L  L  L  V  L  K  S  R  S  P  F  Q  S  S  F  P  C  Y  F  R  H  L  *  C  I  N  *  C  C  K  Q  V  L  *  Y  *  L  L  N  P  L  S </first_frame>
            <second_frame>  G  M  Q  F  R :   S  Y  I  L  K  E  E  E  N  F  G  S  T  T  P  D  H  *  D  A  C  L  K  N  L  L  W  F  R  K  F  L  L  I  S  I  R  M  A  V  W  Q  I  T  T  P  L  L  N  C  L  M  K  G  F  D  I  C  C  K  S  *  D  L  K  *  R  M  L  L  W  C  M  *  T  Y  M  L  S  N  M  I  L  *  P  T  P  A  V  M  :  A  S  Q  I  R  *  W  L  A  V  A  M  E  V  L  R  T  T  T  V  K  E  *  H  A  V  S  M  I  I  R  F  A  V  K  G  L  S  S  *  V  G  M  E  F  I  I  P  R  Q  L  I  E  L  *  L  L  R  Y  C  Q  W  T  T  P  L  H  E  L  A  S  I  S  F  A  I  D  C  H  L  L  E  *  S  A  S  M  N  *  Y  M  L  L  Q  S  I  M  K  N  I  *  F  G  K  I  E  K  M  I  G  Y  K  K  E  A  R  *  T  F  C  S  *  F  *  S  H  D  P  L  F  S  P  V  F  P  V  I  L  G  I  Y  N  V  L  I  N  V  V  S  K  S  Y  D  I  N  Y  *  T  H  *   </second_frame>
            <third_frame>   E  C  N  S   : G  H  I  F  S  R  R  K  K  I  L  G  P  Q  H  R  T  I  R  M  P  A  S  K  T  Y  S  G  S  E  S  F  F  *  S  R  S  A  W  L  S  G  K  L  Q  L  R  C  *  T  V  *  *  R  A  S  T  F  V  A  R  V  E  I  *  N  E  G  C  Y  Y  G  V  C  R  H  I  C  Y  Q  I  *  S  Y  S  Q  L  Q  Q  L  W :   L  L  K  S  V  N  G  L  L  W  L  W  R  S  S  V  Q  L  P  *  R  S  D  M  R  S  A  *  L  S  G  L  Q  *  R  V  *  V  H  K  L  G  W  S  S  L  Y  R  G  S  *  *  S  Y  S  F  *  D  T  V  N  G  L  L  H  S  T  N  W  L  R  F  L  L  P  L  I  V  I  C  *  N  K  V  Q  A  *  I  D  I  C  C  F  R  V  L  *  K  I  F  N  L  E  K  *  K  K  *  L  V  I  R  K  R  P  G  K  L  F  A  L  S  F  E  V  T  I  P  F  S  V  Q  F  S  L  L  F  *  A  S  I  M  Y  *  L  M  L  *  A  S  L  M  I  L  I  I  K  P  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15529" stop="15515"/>
                    <exon start="15264" stop="14994"/>
                    <exon start="14549" stop="14320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNAIQVIYSQGGRKFWVHNTGPLGCLPQKLTLVQKVSSDLDPHGCLANYNSAAKLFNEGLRHLLQELRSEMKDATMVYVDIYAIKYDLIANSSSYGFSNPLMACCGYGGPPYNYRKGVTCGQHDYQVCSEGSEFISWDGVHYTEAANRVIASKILSMDYSTPRIGFDFFCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25783" PGL_stop="31292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25783" e_stop="25939"/>
            <exon e_start="26508" e_stop="26795"/>
            <exon e_start="28803" e_stop="28907"/>
            <exon e_start="29016" e_stop="29063"/>
            <exon e_start="30724" e_stop="31232"/>
            <exon e_start="31284" e_stop="31292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.994"/>
          <exon-intron don_prob="0.639" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="25783" e_stop="25939" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26508" e_stop="26795" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.639" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28803" e_stop="28907" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29016" e_stop="29063" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30724" e_stop="31232" e_length="509"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.921">
            <gDNA_intron_boundary i_start="31233" i_stop="31283" i_length="51"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="31284" e_stop="31292" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25783" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25804" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25837" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25902" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25912" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25912" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25914" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25914" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25919" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25920" stop="25939"/>
              <exon start="26508" stop="26795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25922" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26523" stop="26795"/>
              <exon start="28803" stop="28843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26527" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26530" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26532" stop="26795"/>
              <exon start="28803" stop="28903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26576" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26730" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26731" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28890" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28899" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30752" stop="31112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30779" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30857" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTTTAATTATTTTAATAATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG : TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG : GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG : AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG : ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTAT : AAAATTACA</gDNA_template>
            <first_frame> I  F  F  N  Y  F  N  N  I  P  K  F  Y  S  S  I  M  K  N  P  N  Q  *  S  S  T  I  I  I  T  F  *  S  D  K  T  T  C  F  S  P  L  F  F  W  L  S  L  F  Q  L  S   : V  S  S  V  *  G  I  H  G  V  *  R  A  F  T  C  D  R  T  C  N  W  F  Q  E  I  S  W  S  C  *  K  S  N  R  N  H  C  K  *  S  *  R  L  Y  E  E  K  G  Y  A  Q  R  A  D  P  W  E  L  Q  H  P  *  Y  C  R  P  G  S  P  S  S  L  I  S  D  T  A  S  W  F  K  R  W  *  L  G  V  I  *  F  Q  E  S  Y  L   : G  T  L  W  S  *  *  W  C  H  N  V  C  H  R  E  S  G  C  Q  *  S  Y  F  P  L  S  R  *  D  G  M  E  T  S   : E  S  T  Y  C  S  C  R  W  G  N  F  A  *  T  R   : D  F  S  S  G  G  G  N  D  Q  G  I  G  K  D  G  I  *  S  N  D  L  *  *  C  R  P  V  C  M  Q  L  C  I  L  P  F  L  A  F  C  R  A  *  W  C  P  I  T  I  C  T  R  S  P  L  P  N  H  R  R  G  D  A  N  A  I  C  C  F  F  A  G  A  T  R  L  F  I  L  V  L  D  F  C  V  W  K  C  I  C  L  V  I  Y  A  V  Y  A  E  E  G  *  S  G  Y  K  C  N  A  L  I  N  S  E  L  L  V  N  G  K  C  I  W  C  V  H  V  S  S  S  T  F  L  G  W  F  I  S  L  I  W  R  C  F  M  P  I  C  E  Q  T  Y  S  F  L  Y  L  L  M  D  M  I  G  T  C  P  S  I  Y  :  K  I  T </first_frame>
            <second_frame>  F  F  L  I  I  L  I  I  F  Q  N  F  T  H  Q  *  *  R  I  P  I  S  S  L  L  P  L  *  S  P  F  D  Q  I  R  P  L  A  S  V  L  Y  S  F  G  S  L  S  F  S  F  Q  :  F  R  L  S  R  G  Y  M  G  S  E  G  P  S  P  V  I  V  H  V  T  G  F  K  K  F  H  G  V  A  E  N  P  T  E  T  I  V  S  N  L  K  D  Y  M  K  K  R  G  M  P  K  G  L  I  L  G  N  C  S  I  L  D  T  A  G  Q  G  A  L  V  P  L  Y  Q  T  L  Q  A  G  L  S  G  G  D  S  E  S  S  N  S  K  R  V  I  W  :  V  H  F  G  V  N  S  G  A  T  M  F  A  I  E  N  Q  A  V  N  E  A  T  F  R  C  P  D  E  M  G  W  K  P  Q  :  K  V  P  I  V  P  A  D  G  A  I  S  R  K  R  E  :  T  S  L  P  V  E  E  M  T  K  V  L  A  K  M  G  Y  E  V  M  T  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  H  N  G  V  R  S  L  F  V  H  V  P  L  F  L  T  I  D  E  E  T  Q  M  Q  F  A  A  S  L  L  E  L  L  A  S  S  Y  *  S  S  T  S  V  S  G  S  V  F  A  L  L  F  M  L  C  M  R  K  K  V  D  L  D  I  N  V  M  L  *  *  T  V  N  F  *  *  M  A  N  A  Y  G  V  Y  M  Y  L  P  Q  H  S  L  G  G  L  S  R  *  F  G  D  V  S  C  L  F  A  S  K  L  T  A  F  C  I  S  *  W  I  *  *  E  L  V  L  Q  F  I :   K  L   </second_frame>
            <third_frame>   F  F  *  L  F  *  *  Y  S  K  I  L  L  I  N  N  E  E  S  Q  S  V  V  F  Y  H  Y  N  H  L  L  I  R  *  D  H  L  L  Q  S  F  I  L  L  A  L  S  L  S  A  F  S :   F  V  C  L  G  D  T  W  G  L  K  G  L  H  L  *  S  Y  M  *  L  V  S  R  N  F  M  E  L  L  K  I  Q  Q  K  P  L  *  V  I  L  K  I  I  *  R  K  G  V  C  P  K  G  *  S  L  G  I  A  A  S  L  I  L  Q  A  R  E  P  *  F  P  Y  I  R  H  C  K  L  V  *  A  V  V  T  R  S  H  L  I  P  R  E  L  F  G :   Y  T  L  E  L  I  V  V  P  Q  C  L  P  *  R  I  R  L  S  M  K  L  L  S  V  V  Q  M  R  W  D  G  N  L  R :   K  Y  L  L  F  L  Q  M  G  Q  F  R  V  N  E  R :   L  L  F  R  W  R  K  *  P  R  Y  W  Q  R  W  D  M  K  *  *  P  L  M  M  Q  A  G  L  Y  A  I  M  Y  T  T  I  P  C  V  L  Q  S  I  M  V  S  D  H  Y  L  Y  T  F  P  S  S  *  P  *  T  R  R  R  K  C  N  L  L  L  L  C  W  S  Y  S  P  L  H  T  S  P  R  L  L  C  L  E  V  Y  L  P  C  Y  L  C  C  V  C  G  R  R  L  I  W  I  *  M  *  C  F  N  K  Q  *  T  F  S  E  W  Q  M  H  M  V  C  T  C  I  F  L  N  I  P  W  V  V  Y  L  V  D  L  E  M  F  H  A  Y  L  R  A  N  L  Q  L  S  V  S  P  N  G  Y  D  R  N  L  S  F  N  L   : *  N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25868" stop="25939"/>
                    <exon start="26508" stop="26795"/>
                    <exon start="28803" stop="28907"/>
                    <exon start="29016" stop="29063"/>
                    <exon start="30724" stop="30963"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPFDQIRPLASVLYSFGSLSFSFQFRLSRGYMGSEGPSPVIVHVTGFKKFHGVAENPTETIVSNLKDYMKKRGMPKGLILGNCSILDTAGQGALVPLYQTLQAGLSGGDSESSNSKRVIWVHFGVNSGATMFAIENQAVNEATFRCPDEMGWKPQKVPIVPADGAISRKRETSLPVEEMTKVLAKMGYEVMTSDDAGRFVCNYVYYHSLRFAEHNGVRSLFVHVPLFLTIDEETQMQFAASLLELLASSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31032" stop="31232"/>
                    <exon start="31284" stop="31292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYKCNALINSELLVNGKCIWCVHVSSSTFLGWFISLIWRCFMPICEQTYSFLYLLMDMIGTCPSIYKIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25783" e_stop="25939"/>
            <exon e_start="26508" e_stop="26795"/>
            <exon e_start="28803" e_stop="28907"/>
            <exon e_start="29016" e_stop="29063"/>
            <exon e_start="30724" e_stop="31103"/>
            <exon e_start="31284" e_stop="31291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.994"/>
          <exon-intron don_prob="0.639" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="25783" e_stop="25939" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26508" e_stop="26795" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.639" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28803" e_stop="28907" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29016" e_stop="29063" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30724" e_stop="31103" e_length="380"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.921">
            <gDNA_intron_boundary i_start="31104" i_stop="31283" i_length="180"/>
          </intron>
          <exon e_serial="6" e_score="0.625">
            <gDNA_exon_boundary e_start="31284" e_stop="31291" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25783" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25804" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25837" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25902" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25912" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25912" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25914" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25914" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25919" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25920" stop="25939"/>
              <exon start="26508" stop="26795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25922" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26523" stop="26795"/>
              <exon start="28803" stop="28843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26527" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26532" stop="26795"/>
              <exon start="28803" stop="28903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26576" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28856" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31103"/>
              <exon start="31284" stop="31291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTTTAATTATTTTAATAATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG : TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG : GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG : AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG : ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACAT : AAAATTAC</gDNA_template>
            <first_frame> I  F  F  N  Y  F  N  N  I  P  K  F  Y  S  S  I  M  K  N  P  N  Q  *  S  S  T  I  I  I  T  F  *  S  D  K  T  T  C  F  S  P  L  F  F  W  L  S  L  F  Q  L  S   : V  S  S  V  *  G  I  H  G  V  *  R  A  F  T  C  D  R  T  C  N  W  F  Q  E  I  S  W  S  C  *  K  S  N  R  N  H  C  K  *  S  *  R  L  Y  E  E  K  G  Y  A  Q  R  A  D  P  W  E  L  Q  H  P  *  Y  C  R  P  G  S  P  S  S  L  I  S  D  T  A  S  W  F  K  R  W  *  L  G  V  I  *  F  Q  E  S  Y  L   : G  T  L  W  S  *  *  W  C  H  N  V  C  H  R  E  S  G  C  Q  *  S  Y  F  P  L  S  R  *  D  G  M  E  T  S   : E  S  T  Y  C  S  C  R  W  G  N  F  A  *  T  R   : D  F  S  S  G  G  G  N  D  Q  G  I  G  K  D  G  I  *  S  N  D  L  *  *  C  R  P  V  C  M  Q  L  C  I  L  P  F  L  A  F  C  R  A  *  W  C  P  I  T  I  C  T  R  S  P  L  P  N  H  R  R  G  D  A  N  A  I  C  C  F  F  A  G  A  T  R  L  F  I  L  V  L  D  F  C  V  W  K  C  I  C  L  V  I  Y  A  V  Y  A  E  E  G  *  S  G  Y  K  C  N  A  L  I  N  S  E  L  L  V  N  G  K  C  I  W  C  V  H  :  K  I   </first_frame>
            <second_frame>  F  F  L  I  I  L  I  I  F  Q  N  F  T  H  Q  *  *  R  I  P  I  S  S  L  L  P  L  *  S  P  F  D  Q  I  R  P  L  A  S  V  L  Y  S  F  G  S  L  S  F  S  F  Q  :  F  R  L  S  R  G  Y  M  G  S  E  G  P  S  P  V  I  V  H  V  T  G  F  K  K  F  H  G  V  A  E  N  P  T  E  T  I  V  S  N  L  K  D  Y  M  K  K  R  G  M  P  K  G  L  I  L  G  N  C  S  I  L  D  T  A  G  Q  G  A  L  V  P  L  Y  Q  T  L  Q  A  G  L  S  G  G  D  S  E  S  S  N  S  K  R  V  I  W  :  V  H  F  G  V  N  S  G  A  T  M  F  A  I  E  N  Q  A  V  N  E  A  T  F  R  C  P  D  E  M  G  W  K  P  Q  :  K  V  P  I  V  P  A  D  G  A  I  S  R  K  R  E  :  T  S  L  P  V  E  E  M  T  K  V  L  A  K  M  G  Y  E  V  M  T  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  H  N  G  V  R  S  L  F  V  H  V  P  L  F  L  T  I  D  E  E  T  Q  M  Q  F  A  A  S  L  L  E  L  L  A  S  S  Y  *  S  S  T  S  V  S  G  S  V  F  A  L  L  F  M  L  C  M  R  K  K  V  D  L  D  I  N  V  M  L  *  *  T  V  N  F  *  *  M  A  N  A  Y  G  V  Y  I :   K  L  </second_frame>
            <third_frame>   F  F  *  L  F  *  *  Y  S  K  I  L  L  I  N  N  E  E  S  Q  S  V  V  F  Y  H  Y  N  H  L  L  I  R  *  D  H  L  L  Q  S  F  I  L  L  A  L  S  L  S  A  F  S :   F  V  C  L  G  D  T  W  G  L  K  G  L  H  L  *  S  Y  M  *  L  V  S  R  N  F  M  E  L  L  K  I  Q  Q  K  P  L  *  V  I  L  K  I  I  *  R  K  G  V  C  P  K  G  *  S  L  G  I  A  A  S  L  I  L  Q  A  R  E  P  *  F  P  Y  I  R  H  C  K  L  V  *  A  V  V  T  R  S  H  L  I  P  R  E  L  F  G :   Y  T  L  E  L  I  V  V  P  Q  C  L  P  *  R  I  R  L  S  M  K  L  L  S  V  V  Q  M  R  W  D  G  N  L  R :   K  Y  L  L  F  L  Q  M  G  Q  F  R  V  N  E  R :   L  L  F  R  W  R  K  *  P  R  Y  W  Q  R  W  D  M  K  *  *  P  L  M  M  Q  A  G  L  Y  A  I  M  Y  T  T  I  P  C  V  L  Q  S  I  M  V  S  D  H  Y  L  Y  T  F  P  S  S  *  P  *  T  R  R  R  K  C  N  L  L  L  L  C  W  S  Y  S  P  L  H  T  S  P  R  L  L  C  L  E  V  Y  L  P  C  Y  L  C  C  V  C  G  R  R  L  I  W  I  *  M  *  C  F  N  K  Q  *  T  F  S  E  W  Q  M  H  M  V  C  T   : *  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25868" stop="25939"/>
                    <exon start="26508" stop="26795"/>
                    <exon start="28803" stop="28907"/>
                    <exon start="29016" stop="29063"/>
                    <exon start="30724" stop="30963"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPFDQIRPLASVLYSFGSLSFSFQFRLSRGYMGSEGPSPVIVHVTGFKKFHGVAENPTETIVSNLKDYMKKRGMPKGLILGNCSILDTAGQGALVPLYQTLQAGLSGGDSESSNSKRVIWVHFGVNSGATMFAIENQAVNEATFRCPDEMGWKPQKVPIVPADGAISRKRETSLPVEEMTKVLAKMGYEVMTSDDAGRFVCNYVYYHSLRFAEHNGVRSLFVHVPLFLTIDEETQMQFAASLLELLASSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26502" e_stop="26795"/>
            <exon e_start="28803" e_stop="28907"/>
            <exon e_start="29016" e_stop="29063"/>
            <exon e_start="30724" e_stop="31232"/>
            <exon e_start="31284" e_stop="31292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.639" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26502" e_stop="26795" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.639" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28803" e_stop="28907" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29016" e_stop="29063" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30724" e_stop="31232" e_length="509"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.921">
            <gDNA_intron_boundary i_start="31233" i_stop="31283" i_length="51"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="31284" e_stop="31292" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26502" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26502" stop="26795"/>
              <exon start="28803" stop="28822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26504" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26523" stop="26795"/>
              <exon start="28803" stop="28843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26527" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26530" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26531" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="30844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26532" stop="26795"/>
              <exon start="28803" stop="28903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26576" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26730" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26731" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28890" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28899" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30752" stop="31112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30779" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30857" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG : GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG : AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG : ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTAT : AAAATTACA</gDNA_template>
            <first_frame> V  Q  F  R  L  S  R  G  Y  M  G  S  E  G  P  S  P  V  I  V  H  V  T  G  F  K  K  F  H  G  V  A  E  N  P  T  E  T  I  V  S  N  L  K  D  Y  M  K  K  R  G  M  P  K  G  L  I  L  G  N  C  S  I  L  D  T  A  G  Q  G  A  L  V  P  L  Y  Q  T  L  Q  A  G  L  S  G  G  D  S  E  S  S  N  S  K  R  V  I  W  :  V  H  F  G  V  N  S  G  A  T  M  F  A  I  E  N  Q  A  V  N  E  A  T  F  R  C  P  D  E  M  G  W  K  P  Q  :  K  V  P  I  V  P  A  D  G  A  I  S  R  K  R  E  :  T  S  L  P  V  E  E  M  T  K  V  L  A  K  M  G  Y  E  V  M  T  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  H  N  G  V  R  S  L  F  V  H  V  P  L  F  L  T  I  D  E  E  T  Q  M  Q  F  A  A  S  L  L  E  L  L  A  S  S  Y  *  S  S  T  S  V  S  G  S  V  F  A  L  L  F  M  L  C  M  R  K  K  V  D  L  D  I  N  V  M  L  *  *  T  V  N  F  *  *  M  A  N  A  Y  G  V  Y  M  Y  L  P  Q  H  S  L  G  G  L  S  R  *  F  G  D  V  S  C  L  F  A  S  K  L  T  A  F  C  I  S  *  W  I  *  *  E  L  V  L  Q  F  I :   K  L   </first_frame>
            <second_frame>  F  S  F  V  C  L  G  D  T  W  G  L  K  G  L  H  L  *  S  Y  M  *  L  V  S  R  N  F  M  E  L  L  K  I  Q  Q  K  P  L  *  V  I  L  K  I  I  *  R  K  G  V  C  P  K  G  *  S  L  G  I  A  A  S  L  I  L  Q  A  R  E  P  *  F  P  Y  I  R  H  C  K  L  V  *  A  V  V  T  R  S  H  L  I  P  R  E  L  F  G :   Y  T  L  E  L  I  V  V  P  Q  C  L  P  *  R  I  R  L  S  M  K  L  L  S  V  V  Q  M  R  W  D  G  N  L  R :   K  Y  L  L  F  L  Q  M  G  Q  F  R  V  N  E  R :   L  L  F  R  W  R  K  *  P  R  Y  W  Q  R  W  D  M  K  *  *  P  L  M  M  Q  A  G  L  Y  A  I  M  Y  T  T  I  P  C  V  L  Q  S  I  M  V  S  D  H  Y  L  Y  T  F  P  S  S  *  P  *  T  R  R  R  K  C  N  L  L  L  L  C  W  S  Y  S  P  L  H  T  S  P  R  L  L  C  L  E  V  Y  L  P  C  Y  L  C  C  V  C  G  R  R  L  I  W  I  *  M  *  C  F  N  K  Q  *  T  F  S  E  W  Q  M  H  M  V  C  T  C  I  F  L  N  I  P  W  V  V  Y  L  V  D  L  E  M  F  H  A  Y  L  R  A  N  L  Q  L  S  V  S  P  N  G  Y  D  R  N  L  S  F  N  L   : *  N  Y  </second_frame>
            <third_frame>   S  V  S  S  V  *  G  I  H  G  V  *  R  A  F  T  C  D  R  T  C  N  W  F  Q  E  I  S  W  S  C  *  K  S  N  R  N  H  C  K  *  S  *  R  L  Y  E  E  K  G  Y  A  Q  R  A  D  P  W  E  L  Q  H  P  *  Y  C  R  P  G  S  P  S  S  L  I  S  D  T  A  S  W  F  K  R  W  *  L  G  V  I  *  F  Q  E  S  Y  L   : G  T  L  W  S  *  *  W  C  H  N  V  C  H  R  E  S  G  C  Q  *  S  Y  F  P  L  S  R  *  D  G  M  E  T  S   : E  S  T  Y  C  S  C  R  W  G  N  F  A  *  T  R   : D  F  S  S  G  G  G  N  D  Q  G  I  G  K  D  G  I  *  S  N  D  L  *  *  C  R  P  V  C  M  Q  L  C  I  L  P  F  L  A  F  C  R  A  *  W  C  P  I  T  I  C  T  R  S  P  L  P  N  H  R  R  G  D  A  N  A  I  C  C  F  F  A  G  A  T  R  L  F  I  L  V  L  D  F  C  V  W  K  C  I  C  L  V  I  Y  A  V  Y  A  E  E  G  *  S  G  Y  K  C  N  A  L  I  N  S  E  L  L  V  N  G  K  C  I  W  C  V  H  V  S  S  S  T  F  L  G  W  F  I  S  L  I  W  R  C  F  M  P  I  C  E  Q  T  Y  S  F  L  Y  L  L  M  D  M  I  G  T  C  P  S  I  Y  :  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26502" stop="26795"/>
                    <exon start="28803" stop="28907"/>
                    <exon start="29016" stop="29063"/>
                    <exon start="30724" stop="30963"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQFRLSRGYMGSEGPSPVIVHVTGFKKFHGVAENPTETIVSNLKDYMKKRGMPKGLILGNCSILDTAGQGALVPLYQTLQAGLSGGDSESSNSKRVIWVHFGVNSGATMFAIENQAVNEATFRCPDEMGWKPQKVPIVPADGAISRKRETSLPVEEMTKVLAKMGYEVMTSDDAGRFVCNYVYYHSLRFAEHNGVRSLFVHVPLFLTIDEETQMQFAASLLELLASSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31032" stop="31232"/>
                    <exon start="31284" stop="31292"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYKCNALINSELLVNGKCIWCVHVSSSTFLGWFISLIWRCFMPICEQTYSFLYLLMDMIGTCPSIYKIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="26511" e_stop="26618"/>
            <exon e_start="26687" e_stop="26795"/>
            <exon e_start="28803" e_stop="28907"/>
            <exon e_start="29016" e_stop="29063"/>
            <exon e_start="30724" e_stop="31232"/>
            <exon e_start="31284" e_stop="31292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.268" acc_prob="0.000" e_score="0.981"/>
          <exon-intron don_prob="0.639" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="26511" e_stop="26618" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.268" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26619" i_stop="26686" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26687" e_stop="26795" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.639" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28803" e_stop="28907" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29016" e_stop="29063" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30724" e_stop="31232" e_length="509"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.921">
            <gDNA_intron_boundary i_start="31233" i_stop="31283" i_length="51"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="31284" e_stop="31292" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26511" stop="26618"/>
              <exon start="26687" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26730" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26731" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28890" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28899" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30752" stop="31112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30779" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30857" stop="31232"/>
              <exon start="31284" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATT : CATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG : GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG : AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG : ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTAT : AAAATTACA</gDNA_template>
            <first_frame> R  L  S  R  G  Y  M  G  S  E  G  P  S  P  V  I  V  H  V  T  G  F  K  K  F  H  G  V  A  E  N  P  T  E  T  I  :  H  P  *  Y  C  R  P  G  S  P  S  S  L  I  S  D  T  A  S  W  F  K  R  W  *  L  G  V  I  *  F  Q  E  S  Y  L   : G  T  L  W  S  *  *  W  C  H  N  V  C  H  R  E  S  G  C  Q  *  S  Y  F  P  L  S  R  *  D  G  M  E  T  S   : E  S  T  Y  C  S  C  R  W  G  N  F  A  *  T  R   : D  F  S  S  G  G  G  N  D  Q  G  I  G  K  D  G  I  *  S  N  D  L  *  *  C  R  P  V  C  M  Q  L  C  I  L  P  F  L  A  F  C  R  A  *  W  C  P  I  T  I  C  T  R  S  P  L  P  N  H  R  R  G  D  A  N  A  I  C  C  F  F  A  G  A  T  R  L  F  I  L  V  L  D  F  C  V  W  K  C  I  C  L  V  I  Y  A  V  Y  A  E  E  G  *  S  G  Y  K  C  N  A  L  I  N  S  E  L  L  V  N  G  K  C  I  W  C  V  H  V  S  S  S  T  F  L  G  W  F  I  S  L  I  W  R  C  F  M  P  I  C  E  Q  T  Y  S  F  L  Y  L  L  M  D  M  I  G  T  C  P  S  I  Y  :  K  I  T </first_frame>
            <second_frame>  V  C  L  G  D  T  W  G  L  K  G  L  H  L  *  S  Y  M  *  L  V  S  R  N  F  M  E  L  L  K  I  Q  Q  K  P  F :   I  L  D  T  A  G  Q  G  A  L  V  P  L  Y  Q  T  L  Q  A  G  L  S  G  G  D  S  E  S  S  N  S  K  R  V  I  W  :  V  H  F  G  V  N  S  G  A  T  M  F  A  I  E  N  Q  A  V  N  E  A  T  F  R  C  P  D  E  M  G  W  K  P  Q  :  K  V  P  I  V  P  A  D  G  A  I  S  R  K  R  E  :  T  S  L  P  V  E  E  M  T  K  V  L  A  K  M  G  Y  E  V  M  T  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  H  N  G  V  R  S  L  F  V  H  V  P  L  F  L  T  I  D  E  E  T  Q  M  Q  F  A  A  S  L  L  E  L  L  A  S  S  Y  *  S  S  T  S  V  S  G  S  V  F  A  L  L  F  M  L  C  M  R  K  K  V  D  L  D  I  N  V  M  L  *  *  T  V  N  F  *  *  M  A  N  A  Y  G  V  Y  M  Y  L  P  Q  H  S  L  G  G  L  S  R  *  F  G  D  V  S  C  L  F  A  S  K  L  T  A  F  C  I  S  *  W  I  *  *  E  L  V  L  Q  F  I :   K  L   </second_frame>
            <third_frame>   S  V  *  G  I  H  G  V  *  R  A  F  T  C  D  R  T  C  N  W  F  Q  E  I  S  W  S  C  *  K  S  N  R  N  H   : S  S  L  I  L  Q  A  R  E  P  *  F  P  Y  I  R  H  C  K  L  V  *  A  V  V  T  R  S  H  L  I  P  R  E  L  F  G :   Y  T  L  E  L  I  V  V  P  Q  C  L  P  *  R  I  R  L  S  M  K  L  L  S  V  V  Q  M  R  W  D  G  N  L  R :   K  Y  L  L  F  L  Q  M  G  Q  F  R  V  N  E  R :   L  L  F  R  W  R  K  *  P  R  Y  W  Q  R  W  D  M  K  *  *  P  L  M  M  Q  A  G  L  Y  A  I  M  Y  T  T  I  P  C  V  L  Q  S  I  M  V  S  D  H  Y  L  Y  T  F  P  S  S  *  P  *  T  R  R  R  K  C  N  L  L  L  L  C  W  S  Y  S  P  L  H  T  S  P  R  L  L  C  L  E  V  Y  L  P  C  Y  L  C  C  V  C  G  R  R  L  I  W  I  *  M  *  C  F  N  K  Q  *  T  F  S  E  W  Q  M  H  M  V  C  T  C  I  F  L  N  I  P  W  V  V  Y  L  V  D  L  E  M  F  H  A  Y  L  R  A  N  L  Q  L  S  V  S  P  N  G  Y  D  R  N  L  S  F  N  L   : *  N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26569" stop="26618"/>
                    <exon start="26687" stop="26795"/>
                    <exon start="28803" stop="28907"/>
                    <exon start="29016" stop="29063"/>
                    <exon start="30724" stop="30963"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRNFMELLKIQQKPFILDTAGQGALVPLYQTLQAGLSGGDSESSNSKRVIWVHFGVNSGATMFAIENQAVNEATFRCPDEMGWKPQKVPIVPADGAISRKRETSLPVEEMTKVLAKMGYEVMTSDDAGRFVCNYVYYHSLRFAEHNGVRSLFVHVPLFLTIDEETQMQFAASLLELLASSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31032" stop="31232"/>
                    <exon start="31284" stop="31292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYKCNALINSELLVNGKCIWCVHVSSSTFLGWFISLIWRCFMPICEQTYSFLYLLMDMIGTCPSIYKIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="29562" e_stop="30248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="29562" e_stop="30248" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29562" stop="30248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTG</gDNA_template>
            <first_frame> W  K  *  T  Q  S  T  E  L  R  K  *  L  V  N  T  K  S  *  A  F  W  K  L  K  I  V  G  S  L  S  M  L  I  H  A  K  P  *  V  K  C  L  I  F  Q  P  Q  W  F  S  F  L  F  W  S  Y  S  S  *  S  F  K  C  T  R  T  G  W  K  D  M  D  L  C  C  E  G  *  F  F  I  L  *  Y  T  V  R  I  Q  F  L  L  S  S  I  P  S  S  *  T  F  *  R  F  L  F  I  Y  F  Y  *  K  I  F  *  F  P  G  I  M  T  L  *  T  V  T  K  T  N  N  R  G  F  *  I  I  S  L  L  L  C  F  I  L  S  Q  S  L  L  *  L  P  *  G  G  R  S  *  *  I  T  K  W  C  S  A  C  W  K  Y  I  S  Y  L  E  *  L  E  L  P  S  K  L  N  T  N  F  S  I  L  Y  I  H  D  F  P  *  Y  V  F  I  S  I  P  L  F  D  S  G  I  P  A  *  S  V  L  S  I  F  P  I  Y  L  R  T  D  G  L </first_frame>
            <second_frame>  G  N  R  H  R  A  L  S  *  G  S  N  L  *  T  Q  S  H  K  L  F  G  S  S  R  L  L  V  H  C  P  C  L  Y  M  L  N  L  E  L  N  A  *  Y  S  S  L  N  G  S  L  S  F  S  G  H  I  L  H  N  P  L  N  A  P  G  P  D  G  K  I  W  T  Y  V  A  R  V  D  S  S  F  Y  D  I  Q  F  E  S  N  F  F  S  Q  V  F  R  A  H  E  L  F  K  D  F  Y  S  F  I  F  T  E  K  Y  S  S  F  Q  G  L  *  H  C  E  L  L  P  R  P  I  T  V  A  S  K  L  F  H  F  C  F  A  S  Y  Y  L  S  H  F  C  D  F  L  E  E  G  G  A  D  E  *  R  S  G  V  V  L  V  G  N  I  F  P  I  L  N  S  W  S  C  H  P  S  *  T  L  I  S  P  S  Y  I  Y  M  I  F  L  D  M  F  S  F  P  Y  L  Y  L  I  Q  G  S  L  H  N  Q  F  F  Q  F  S  L  S  T  *  E  R  T  V   </second_frame>
            <third_frame>   E  I  D  T  E  H  *  A  E  E  V  T  C  K  H  K  V  I  S  F  L  E  A  Q  D  C  W  F  T  V  H  A  Y  T  C  *  T  L  S  *  M  L  N  I  P  A  S  M  V  L  F  P  F  L  V  I  F  F  I  I  L  *  M  H  Q  D  R  M  E  R  Y  G  P  M  L  R  G  L  I  L  H  F  M  I  Y  S  S  N  P  I  S  S  L  K  Y  S  E  L  M  N  F  L  K  I  F  I  H  L  F  L  L  K  N  I  L  V  S  R  D  Y  D  I  V  N  C  Y  Q  D  Q  *  P  W  L  L  N  Y  F  T  F  A  L  L  H  T  I  S  V  T  F  V  T  S  L  R  R  E  E  L  M  N  N  E  V  V  *  C  L  L  E  I  Y  F  L  S  *  I  V  G  V  A  I  Q  A  K  H  *  F  L  H  L  I  Y  T  *  F  S  L  I  C  F  H  F  H  T  F  I  *  F  R  D  P  C  I  I  S  S  F  N  F  P  Y  L  P  K  N  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29692" stop="29925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSSLNGSLSFSGHILHNPLNAPGPDGKIWTYVARVDSSFYDIQFESNFFSQVFRAHELFKDFYSFIFTEKYSSFQGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29750" stop="29953"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHQDRMERYGPMLRGLILHFMIYSSNPISSLKYSELMNFLKIFIHLFLLKNILVSRDYDIVNCYQDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33134" PGL_stop="32488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33134" e_stop="32488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="33134" e_stop="32488" e_length="647"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33134" stop="32488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCCGGGCATGTGTATCCAACATTACAGTGGAAGATTCAACTATTAAGTATTCAGACAATGGTGTTAGGATCAAGACATGGCAAGGAGGATTTGGGACAGTATCCAACATTAATTTCAACAACATTAGAATGGAAAGTGTTCGAAATCCGATAATTTTAGATCAATATTACTGCAGCACAAAGAGCTGTGCAAATCAGACTTCAGCAGTGTACATATCTGATGTGATTTATTCAAACATAAAGGGTACTTATGATGTGAGAAGTCCACCAATGCATTTGGCTTGTAGTAACAGTGTCCCTTGCACAAATTTGACTTTTTTGGATGTGGAGTTATATCCTGCTCAAGGACAAAAAATCTTGGAACCATTTTGTTGGAATGCTTATGGTGCTCTAATTACTCTTACAATTCCACCAGTTTTTTGCTTGTTGGAAGGCACACCTCAGTCATTACCAAGTAATGATCTTGATCAATGCTGATACATGATTTGCTAAGAAATACAAACTTGTAAAAGATGGAGTACTTAATAGTATGTATTAAAGTTTTAGCTCTTCTAGTCTTGTTCCAGAGAGGACTAAAACTTAACTGTAAGCATGTATCCATTTTGTTAATGATATAAAAGTAGTATATTTTAAATCAGTTTTAGAA</gDNA_template>
            <first_frame> F  P  G  M  C  I  Q  H  Y  S  G  R  F  N  Y  *  V  F  R  Q  W  C  *  D  Q  D  M  A  R  R  I  W  D  S  I  Q  H  *  F  Q  Q  H  *  N  G  K  C  S  K  S  D  N  F  R  S  I  L  L  Q  H  K  E  L  C  K  S  D  F  S  S  V  H  I  *  C  D  L  F  K  H  K  G  Y  L  *  C  E  K  S  T  N  A  F  G  L  *  *  Q  C  P  L  H  K  F  D  F  F  G  C  G  V  I  S  C  S  R  T  K  N  L  G  T  I  L  L  E  C  L  W  C  S  N  Y  S  Y  N  S  T  S  F  L  L  V  G  R  H  T  S  V  I  T  K  *  *  S  *  S  M  L  I  H  D  L  L  R  N  T  N  L  *  K  M  E  Y  L  I  V  C  I  K  V  L  A  L  L  V  L  F  Q  R  G  L  K  L  N  C  K  H  V  S  I  L  L  M  I  *  K  *  Y  I  L  N  Q  F  *   </first_frame>
            <second_frame>  S  R  A  C  V  S  N  I  T  V  E  D  S  T  I  K  Y  S  D  N  G  V  R  I  K  T  W  Q  G  G  F  G  T  V  S  N  I  N  F  N  N  I  R  M  E  S  V  R  N  P  I  I  L  D  Q  Y  Y  C  S  T  K  S  C  A  N  Q  T  S  A  V  Y  I  S  D  V  I  Y  S  N  I  K  G  T  Y  D  V  R  S  P  P  M  H  L  A  C  S  N  S  V  P  C  T  N  L  T  F  L  D  V  E  L  Y  P  A  Q  G  Q  K  I  L  E  P  F  C  W  N  A  Y  G  A  L  I  T  L  T  I  P  P  V  F  C  L  L  E  G  T  P  Q  S  L  P  S  N  D  L  D  Q  C  *  Y  M  I  C  *  E  I  Q  T  C  K  R  W  S  T  *  *  Y  V  L  K  F  *  L  F  *  S  C  S  R  E  D  *  N  L  T  V  S  M  Y  P  F  C  *  *  Y  K  S  S  I  F  *  I  S  F  R  </second_frame>
            <third_frame>   P  G  H  V  Y  P  T  L  Q  W  K  I  Q  L  L  S  I  Q  T  M  V  L  G  S  R  H  G  K  E  D  L  G  Q  Y  P  T  L  I  S  T  T  L  E  W  K  V  F  E  I  R  *  F  *  I  N  I  T  A  A  Q  R  A  V  Q  I  R  L  Q  Q  C  T  Y  L  M  *  F  I  Q  T  *  R  V  L  M  M  *  E  V  H  Q  C  I  W  L  V  V  T  V  S  L  A  Q  I  *  L  F  W  M  W  S  Y  I  L  L  K  D  K  K  S  W  N  H  F  V  G  M  L  M  V  L  *  L  L  L  Q  F  H  Q  F  F  A  C  W  K  A  H  L  S  H  Y  Q  V  M  I  L  I  N  A  D  T  *  F  A  K  K  Y  K  L  V  K  D  G  V  L  N  S  M  Y  *  S  F  S  S  S  S  L  V  P  E  R  T  K  T  *  L  *  A  C  I  H  F  V  N  D  I  K  V  V  Y  F  K  S  V  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33133" stop="32657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRACVSNITVEDSTIKYSDNGVRIKTWQGGFGTVSNINFNNIRMESVRNPIILDQYYCSTKSCANQTSAVYISDVIYSNIKGTYDVRSPPMHLACSNSVPCTNLTFLDVELYPAQGQKILEPFCWNAYGALITLTIPPVFCLLEGTPQSLPSNDLDQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35146" PGL_stop="34536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35146" e_stop="34536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="35146" e_stop="34536" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35146" stop="34585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35145" stop="34536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTACTTGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGGTCACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATAGGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTAGCTGGACACAAATTATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATGCAGCAGGCATTTTCAATGTGTTGTCTTATGGGGCTGTTGGTGATGGTGT</gDNA_template>
            <first_frame> E  T  T  C  I  V  F  P  T  C  L  Q  V  L  V  F  S  W  W  S  H  K  Q  L  H  F  C  C  F  F  D  F  Q  E  R  G  C  L  A  L  Y  P  S  N  F  *  K  N  L  L  I  M  T  K  I  S  M  I  F  L  V  *  *  E  L  T  F  *  F  S  I  *  D  *  *  G  V  *  *  K  Q  V  A  K  L  C  Y  F  T  S  L  K  F  Y  K  Y  S  V  L  V  *  K  S  Y  T  S  W  T  Q  I  M  E  F  T  R  F  C  F  L  V  F  S  V  F  L  I  S  Y  V  F  S  V  H  G  R  F  Y  D  Y  P  K  V  S  R  F  R  A  L  S  Q  I  S  M  P  P  F  P  A  P  A  P  G  P  G  P  A  P  A  P  E  P  K  G  D  P  K  T  E  N  V  K  N  S  S  N  D  Y  A  A  G  I  F  N  V  L  S  Y  G  A  V  G  D  G   </first_frame>
            <second_frame>  K  L  L  A  *  S  F  Q  L  V  Y  K  C  W  F  L  V  G  G  H  I  N  N  F  I  F  V  V  F  L  T  S  K  N  V  G  A  L  P  Y  I  L  L  T  S  E  K  T  Y  *  *  *  Q  K  *  A  *  S  F  *  S  S  E  N  *  H  F  S  F  L  Y  R  I  S  E  G  S  S  K  N  K  *  P  N  C  V  T  S  L  P  L  S  S  I  S  T  L  F  *  F  K  K  A  I  L  A  G  H  K  L  W  N  S  L  D  F  A  S  W  F  F  L  F  S  *  F  P  M  F  F  Q  F  M  V  G  F  M  I  T  P  K  C  R  V  F  V  H  C  H  K  Y  Q  C  H  L  S  L  P  L  P  L  A  L  A  L  P  L  L  L  N  L  R  V  I  Q  K  L  R  M  *  R  I  H  Q  M  I  M  Q  Q  A  F  S  M  C  C  L  M  G  L  L  V  M  V  </second_frame>
            <third_frame>   N  Y  L  H  S  L  S  N  L  F  T  S  A  G  F  *  L  V  V  T  *  T  T  S  F  L  L  F  F  *  L  P  R  T  W  V  P  C  L  I  S  F  *  L  L  K  K  P  T  D  N  D  K  N  K  H  D  L  F  S  L  V  R  I  D  I  L  V  F  Y  I  G  L  V  R  G  L  V  K  T  S  S  Q  I  V  L  L  H  F  P  *  V  L  *  V  L  C  F  S  L  K  K  L  Y  *  L  D  T  N  Y  G  I  H  *  I  L  L  L  G  F  F  C  F  L  D  F  L  C  F  F  S  S  W  *  V  L  *  L  P  Q  S  V  A  F  S  C  I  V  T  N  I  N  A  T  F  P  C  P  C  P  W  P  W  P  C  P  C  S  *  T  *  G  *  S  K  N  *  E  C  E  E  F  I  K  *  L  C  S  R  H  F  Q  C  V  V  L  W  G  C  W  *  W  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34843" stop="34538"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYTSWTQIMEFTRFCFLVFSVFLISYVFSVHGRFYDYPKVSRFRALSQISMPPFPAPAPGPGPAPAPEPKGDPKTENVKNSSNDYAAGIFNVLSYGAVGDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40562" PGL_stop="38208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40562" e_stop="40436"/>
            <exon e_start="40361" e_stop="40297"/>
            <exon e_start="39557" e_stop="39473"/>
            <exon e_start="38713" e_stop="38651"/>
            <exon e_start="38509" e_stop="38208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.542" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40562" e_stop="40436" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.542">
            <gDNA_intron_boundary i_start="40435" i_stop="40362" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40361" e_stop="40297" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.928">
            <gDNA_intron_boundary i_start="40296" i_stop="39558" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39557" e_stop="39473" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.940">
            <gDNA_intron_boundary i_start="39472" i_stop="38714" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38713" e_stop="38651" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38650" i_stop="38510" i_length="141"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38509" e_stop="38208" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40562" stop="40436"/>
              <exon start="40361" stop="40297"/>
              <exon start="39557" stop="39473"/>
              <exon start="38713" stop="38651"/>
              <exon start="38509" stop="38208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253749" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40549" stop="40436"/>
              <exon start="40361" stop="40297"/>
              <exon start="39557" stop="39473"/>
              <exon start="38713" stop="38651"/>
              <exon start="38509" stop="38237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40548" stop="40436"/>
              <exon start="40361" stop="40297"/>
              <exon start="39557" stop="39473"/>
              <exon start="38713" stop="38651"/>
              <exon start="38509" stop="38218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTTGGGTAAATACTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCA : ATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACG : GGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAG : GGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAG : GTGATGTGTTCAGAGAAAAGGCCGGAGCATCACTGAGCAATCTGCCTCCCTCTCTAAGGCCTCCGCCTGAGGGTGGTTATCCACCTCTCCCATTTGTTGAGTGGGGATAGGTCTGCCACCTCATTTACTACTCTTGTCAGATATGCTTTAGAGTGGGTGGACTGAAGATGTAGATTGCCCTAAATATAAATACTATATTGACTATGAAACAAATAGATGACTACAAGTTCAGTTGAGTGATTTGCACTTAGAAACAGGAAATTAAAAGTTATGAAAGATTTAAAAATGTTGGTTTCAATTTA</gDNA_template>
            <first_frame> P  L  G  K  Y  Y  C  D  Y  C  D  K  E  F  Q  D  T  A  A  A  R  R  R  H  L  Q  G  V  Q  H  Q  R  A  K  A  L  W  Y  D  S  L  R   : N  P  Q  L  F  N  D  P  D  S  F  G  K  G  V  C  N  H  F  V  R  T  :  G  Y  C  Q  Y  G  D  S  C  K  Y  Y  H  P  K  Q  N  P  Q  T  V  N  Q  T  G  L  P  P   : G  E  N  S  R  E  G  F  H  S  S  S  Q  P  F  G  S  A  S  F  P   : G  D  V  F  R  E  K  A  G  A  S  L  S  N  L  P  P  S  L  R  P  P  P  E  G  G  Y  P  P  L  P  F  V  E  W  G  *  V  C  H  L  I  Y  Y  S  C  Q  I  C  F  R  V  G  G  L  K  M  *  I  A  L  N  I  N  T  I  L  T  M  K  Q  I  D  D  Y  K  F  S  *  V  I  C  T  *  K  Q  E  I  K  S  Y  E  R  F  K  N  V  G  F  N  L </first_frame>
            <second_frame>  R  W  V  N  T  T  A  I  T  A  I  R  N  S  R  I  P  Q  L  L  G  G  V  I  F  K  V  F  N  I  K  E  P  R  L  F  G  T  T  P  C  A  :  I  P  N  Y  L  T  I  R  T  R  S  V  K  E  S  A  I  T  L  F  E  R :   G  I  A  S  M  G  T  P  A  N  I  I  I  P  S  K  T  L  K  L  *  T  K  R  D  S  L  Q  :  G  K  I  V  E  R  V  S  I  Q  V  V  N  L  L  V  Q  P  L  F  Q  :  V  M  C  S  E  K  R  P  E  H  H  *  A  I  C  L  P  L  *  G  L  R  L  R  V  V  I  H  L  S  H  L  L  S  G  D  R  S  A  T  S  F  T  T  L  V  R  Y  A  L  E  W  V  D  *  R  C  R  L  P  *  I  *  I  L  Y  *  L  *  N  K  *  M  T  T  S  S  V  E  *  F  A  L  R  N  R  K  L  K  V  M  K  D  L  K  M  L  V  S  I   </second_frame>
            <third_frame>   V  G  *  I  L  L  R  L  L  R  *  G  I  P  G  Y  R  S  C  S  E  A  S  S  S  R  C  S  T  S  K  S  Q  G  S  L  V  R  L  L  A  Q :   S  P  I  I  *  R  S  G  L  V  R  *  R  S  L  Q  S  L  C  S  N   : G  V  L  P  V  W  G  L  L  Q  I  L  S  S  Q  A  K  P  S  N  C  E  P  N  G  T  P  S  R :   G  K  *  *  R  G  F  P  F  K  *  S  T  F  W  F  S  L  F  S  R :   *  C  V  Q  R  K  G  R  S  I  T  E  Q  S  A  S  L  S  K  A  S  A  *  G  W  L  S  T  S  P  I  C  *  V  G  I  G  L  P  P  H  L  L  L  L  S  D  M  L  *  S  G  W  T  E  D  V  D  C  P  K  Y  K  Y  Y  I  D  Y  E  T  N  R  *  L  Q  V  Q  L  S  D  L  H  L  E  T  G  N  *  K  L  *  K  I  *  K  C  W  F  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40562" stop="40436"/>
                    <exon start="40361" stop="40297"/>
                    <exon start="39557" stop="39473"/>
                    <exon start="38713" stop="38651"/>
                    <exon start="38509" stop="38400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLGKYYCDYCDKEFQDTAAARRRHLQGVQHQRAKALWYDSLRNPQLFNDPDSFGKGVCNHFVRTGYCQYGDSCKYYHPKQNPQTVNQTGLPPGENSREGFHSSSQPFGSASFPGDVFREKAGASLSNLPPSLRPPPEGGYPPLPFVEWG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47733" PGL_stop="41322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47733" e_stop="47579"/>
            <exon e_start="46482" e_stop="46321"/>
            <exon e_start="46196" e_stop="46104"/>
            <exon e_start="45919" e_stop="45860"/>
            <exon e_start="45735" e_stop="45463"/>
            <exon e_start="45105" e_stop="45031"/>
            <exon e_start="44078" e_stop="44022"/>
            <exon e_start="43892" e_stop="43752"/>
            <exon e_start="43656" e_stop="43606"/>
            <exon e_start="42510" e_stop="42415"/>
            <exon e_start="42323" e_stop="42240"/>
            <exon e_start="41924" e_stop="41822"/>
            <exon e_start="41735" e_stop="41322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47733" e_stop="47579" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46482" e_stop="46321" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46196" e_stop="46104" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="45860" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45735" e_stop="45463" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45105" e_stop="45031" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44078" e_stop="44022" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.855" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43892" e_stop="43752" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43656" e_stop="43606" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42510" e_stop="42415" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.915" acc_prob="0.954">
            <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42323" e_stop="42240" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41924" e_stop="41822" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.895">
            <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41735" e_stop="41322" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47733" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47731" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47729" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45463"/>
              <exon start="45105" stop="45066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47725" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47723" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47722" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47721" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47721" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47719" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45463"/>
              <exon start="45105" stop="45072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47717" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47709" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47709" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47706" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47706" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47706" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47703" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45463"/>
              <exon start="45105" stop="45067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211575" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43813" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43781" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43779" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43763" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42466" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42450" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42279" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42274" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42262" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42258" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366462" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41919" stop="41822"/>
              <exon start="41735" stop="41322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41887" stop="41822"/>
              <exon start="41735" stop="41438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41886" stop="41822"/>
              <exon start="41735" stop="41342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204958" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41824" stop="41822"/>
              <exon start="41735" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41674" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG : GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG : GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG : ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG : GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG : ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG : GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG : GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG : CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG : GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG : ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT : TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG : AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAAGACTCTTG</gDNA_template>
            <first_frame> S  F  S  L  S  I  N  I  R  F  F  F  L  S  L  Y  L  F  F  S  L  M  V  M  V  S  S  P  P  Q  F  L  S  E  D  R  R  *  S  V  F  F  S  V  S  S  T  F  *  F  F  R :   *  M  T  F  C  G  D  N  *  *  A  D  F  S  W  K  W  L  P  W  A  *  H  L  H  R  V  *  E  N  P  V  A  I  M  L  G  *  I  G  C  L  R  R  *  M  T  *  E  S  G  M  I  R :   K  W  K  Q  Q  L  L  T  V  M  G  L  R  Q  A  T  *  *  *  Q  L  L  V  V  E  M  A  S  Q  S  R :   L  L  V  T  W  L  N  V  L  L  D  K  D  P  L  G  W  C  F  R :   Q  N  A  *  R  L  V  K  L  L  L  L  K  R  F  F  K  I  K  D  I  R  T  E  N  C  R  Q  C  A  F  L  T  T  L  M  L  C  L  S  N  T  A  S  F  P  Q  L  T  R  M  N  C  I  L  T  W  F  L  S  M  Y  L  K  P  F  T  V  L  S  N  T  T  I  S  *  I  K  G  C  R  *  Y  L  *  S  F  I  H  I  R :   F  S  G  H  C  L  T  Y  T  A  L  L  E  C  A  T  G  T  L  N  L  R  I  F  W :   *  I  H  I  P  T  R  L  N  Y  A  I  L  G  V  P  K  F  W :   L  K  E  N  Q  I  F  L  T  S  V  L  G  I  I  E  H  L  S  S  Y  L  V  Q  Q  S  T  L  L  L  *  M  F  G  L  L  A  V  S  *  L  S  Y  F  L  V  S :   H  Y  F  Q  V  K  V  E  L  I  S  L  L  R  S  L  R :   F  *  A  L  L  Q  G  K  K  L  N  V  *  I  P  T  I  M  S  S  N  F  L  K  L  K  L  I  H  G  T  R :   Y  F  I  S  A  C  L  Q  K  Q  L  I  W  S  Q  D  C  F  S  T  L  L  T  C  A  V  L  L :   W  M  P  W  F  T  H  F  L  T  S  F  V  I  P  I  H  A  C  L  M  D  A  F  F  L  P  C  L  T  S  R  L  M  :  S  *  R  M  C  M  Q  R  Y  Y  *  S  W  F  Q  S  T  P  E  N  S  A  L  P  L  G  Y  E  F  L  P  C  D  R  N  N  L  S  V  P  F  E  A  V  F  L  L  C  I  N  L  F  L  L  S  L  I  L  P  C  L  C  C  P  F  V  L  L  L  L  Y  L  V  L  *  K  Q  M  *  G  I  D  L  *  Q  I  P  D  V  Q  P  V  F  L  F  T  L  F  R  Y  I  L  C  L  *  H  Y  V  V  E  N  *  Q  F  E  *  T  L  L  L  W  D  C  K  L  M  I  G  *  L  L  I  W  L  L  R  L  L </first_frame>
            <second_frame>  L  S  L  S  Q  S  I  S  G  S  S  F  S  L  C  I  S  F  S  L  S  W  *  W  Y  H  L  R  H  N  F  Y  R  R  T  A  G  D  R  C  F  S  P  S  P  Q  H  F  D  S  F   : G  E  *  P  F  V  V  I  T  S  K  Q  T  F  L  G  N  G  F  R  G  L  S  T  Y  I  G  F  E  R  I  Q  W  P  *  C  W  G  R  *  V  A  *  G  D  E  *  H  E  N  Q  G  *  *   : G  N  G  S  S  N  C  *  R  *  W  D  *  D  R  P  H  N  S  D  N  Y  W  W  *  K  W  P  A  K  A   : D  Y  *  L  H  G  *  T  C  C  W  T  R  I  L  W  G  G  V  S   : G  K  M  L  R  D  W  *  N  C  C  Y  *  K  G  S  S  R  *  K  I  *  E  P  R  I  A  D  N  A  P  S  *  P  P  *  C  C  V  S  Q  T  L  L  L  F  H  N  *  Q  G  *  T  V  S  *  L  G  S  *  V  C  T  *  N  R  S  P  C  Y  Q  T  L  Q  *  A  E  S  K  D  A  V  D  T  C  E  A  L  Y  I  S   : D  F  Q  G  I  V  L  H  T  P  H  Y  W  S  V  P  Q  G  H  *  T  S  E  S  F   : G  E  S  T  Y  P  P  G  *  I  M  R  F  W  E  C  Q  S  S   : G  *  R  R  T  K  Y  F  L  H  L  F  *  V  L  S  S  T  *  A  H  I  W  C  N  R  V  H  Y  C  Y  R  C  L  V  C  W  L  C  P  S  *  A  T  S  W  S   : A  I  I  S  R  *  K  W  S  *  S  A  C  *  D  H  *   : G  F  R  H  S  Y  K  G  R  N  *  M  Y  E  S  Q  L  *  *  V  Q  I  S  S  N  *  S  S  S  M  A  Q   : D  I  S  *  A  H  A  S  R  S  S  *  S  G  L  K  T  A  S  V  L  S  *  L  A  L  C  C   : F  G  C  L  G  S  P  I  F  *  R  A  S  *  S  Q  Y  T  L  A  *  W  T  L  S  S  S  L  V  *  L  Q  G  S  * :   V  E  E  C  A  C  R  D  I  T  E  V  G  S  R  A  R  Q  K  T  V  P  F  P  W  V  M  S  S  C  L  V  I  E  I  I  *  V  Y  P  L  K  L  C  F  F  S  V  S  I  C  S  F  F  P  L  S  Y  H  V  S  V  V  P  L  Y  Y  Y  Y  Y  I  L  F  C  K  S  R  C  R  E  L  I  F  N  K  Y  P  M  F  N  L  C  S  F  L  P  C  S  D  I  S  Y  A  C  N  I  M  W  L  R  I  N  N  L  S  E  R  Y  Y  Y  G  I  A  N  *  *  *  G  D  C  *  Y  G  S  *  D  S   </second_frame>
            <third_frame>   F  L  S  L  N  Q  Y  Q  V  L  L  S  L  F  V  S  L  F  L  S  H  G  D  G  I  I  S  A  T  I  F  I  G  G  P  P  V  I  G  V  F  L  R  L  L  N  I  L  I  L  S  :  V  N  D  L  L  W  *  *  L  V  S  R  L  F  L  E  M  A  S  V  G  L  A  P  T  S  G  L  R  E  S  S  G  H  N  A  G  V  D  R  L  P  E  E  M  N  D  M  R  I  R  D  D  K  :  E  M  E  A  A  I  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  R  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  V  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  N  V  V  S  L  K  H  C  F  F  S  T  T  D  K  D  E  L  Y  L  N  L  V  L  E  Y  V  P  E  T  V  H  R  V  I  K  H  Y  N  K  L  N  Q  R  M  P  L  I  L  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  S  Y  I  H  R  T  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  A  I  D  V  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  N  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  S  R  L  L  Q  Y  S  P  N  L  R  C  A  A  :  L  D  A  L  V  H  P  F  F  D  E  L  R  D  P  N  T  R  L  P  N  G  R  F  L  P  P  L  F  N  F  K  A  H   : E  L  K  N  V  H  A  E  I  L  L  K  L  V  P  E  H  A  R  K  Q  C  P  S  L  G  L  *  V  P  A  L  *  *  K  *  F  K  C  T  L  *  S  C  V  S  S  L  Y  Q  F  V  P  S  F  P  Y  L  T  M  S  L  L  S  L  C  I  I  I  I  I  S  C  F  V  K  A  D  V  G  N  *  S  L  T  N  T  R  C  S  T  C  V  P  F  Y  P  V  P  I  Y  P  M  L  V  T  L  C  G  *  E  L  T  I  *  V  N  V  I  I  M  G  L  Q  I  N  D  R  V  T  V  D  M  A  P  K  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46458" stop="46321"/>
                    <exon start="46196" stop="46104"/>
                    <exon start="45919" stop="45860"/>
                    <exon start="45735" stop="45463"/>
                    <exon start="45105" stop="45031"/>
                    <exon start="44078" stop="44022"/>
                    <exon start="43892" stop="43752"/>
                    <exon start="43656" stop="43606"/>
                    <exon start="42510" stop="42415"/>
                    <exon start="42323" stop="42240"/>
                    <exon start="41924" stop="41822"/>
                    <exon start="41735" stop="41653"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRLFLEMASVGLAPTSGLRESSGHNAGVDRLPEEMNDMRIRDDKEMEAAIVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLILVKLYTYQIFRALSYIHRTIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCAALDALVHPFFDELRDPNTRLPNGRFLPPLFNFKAHELKNVHAEILLKLVPEHARKQCPSLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41623" stop="41360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPLKLCFFSVSICSFFPLSYHVSVVPLYYYYYILFCKSRCRELIFNKYPMFNLCSFLPCSDISYACNIMWLRINNLSERYYYGIAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46197" e_stop="46104"/>
            <exon e_start="45919" e_stop="45860"/>
            <exon e_start="45735" e_stop="45463"/>
            <exon e_start="45105" e_stop="45031"/>
            <exon e_start="44078" e_stop="44022"/>
            <exon e_start="43892" e_stop="43752"/>
            <exon e_start="43656" e_stop="43606"/>
            <exon e_start="42510" e_stop="42415"/>
            <exon e_start="42323" e_stop="42240"/>
            <exon e_start="41924" e_stop="41822"/>
            <exon e_start="41735" e_stop="41322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46197" e_stop="46104" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="45860" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45735" e_stop="45463" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45105" e_stop="45031" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44078" e_stop="44022" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.855" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43892" e_stop="43752" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43656" e_stop="43606" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42510" e_stop="42415" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.915" acc_prob="0.954">
            <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42323" e_stop="42240" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.974" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41924" e_stop="41822" e_length="103"/>
          </exon>
          <intron i_serial="10" don_prob="0.980" acc_prob="0.895">
            <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41735" e_stop="41322" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46197" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45463"/>
              <exon start="45105" stop="45080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46168" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45656" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45652" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45646" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45614" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45597" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45583" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45580" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45550" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45520" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45494" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45481" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45078" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43890" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43824" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43813" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43781" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43779" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43763" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42466" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42450" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42279" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42274" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42262" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42258" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366462" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41919" stop="41822"/>
              <exon start="41735" stop="41322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41887" stop="41822"/>
              <exon start="41735" stop="41438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41886" stop="41822"/>
              <exon start="41735" stop="41342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204958" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41824" stop="41822"/>
              <exon start="41735" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41674" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG : ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG : GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG : ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG : GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG : GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG : CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG : GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG : ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT : TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG : AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAAGACTCTTG</gDNA_template>
            <first_frame> G  N  G  S  S  N  C  *  R  *  W  D  *  D  R  P  H  N  S  D  N  Y  W  W  *  K  W  P  A  K  A   : D  Y  *  L  H  G  *  T  C  C  W  T  R  I  L  W  G  G  V  S   : G  K  M  L  R  D  W  *  N  C  C  Y  *  K  G  S  S  R  *  K  I  *  E  P  R  I  A  D  N  A  P  S  *  P  P  *  C  C  V  S  Q  T  L  L  L  F  H  N  *  Q  G  *  T  V  S  *  L  G  S  *  V  C  T  *  N  R  S  P  C  Y  Q  T  L  Q  *  A  E  S  K  D  A  V  D  T  C  E  A  L  Y  I  S   : D  F  Q  G  I  V  L  H  T  P  H  Y  W  S  V  P  Q  G  H  *  T  S  E  S  F   : G  E  S  T  Y  P  P  G  *  I  M  R  F  W  E  C  Q  S  S   : G  *  R  R  T  K  Y  F  L  H  L  F  *  V  L  S  S  T  *  A  H  I  W  C  N  R  V  H  Y  C  Y  R  C  L  V  C  W  L  C  P  S  *  A  T  S  W  S   : A  I  I  S  R  *  K  W  S  *  S  A  C  *  D  H  *   : G  F  R  H  S  Y  K  G  R  N  *  M  Y  E  S  Q  L  *  *  V  Q  I  S  S  N  *  S  S  S  M  A  Q   : D  I  S  *  A  H  A  S  R  S  S  *  S  G  L  K  T  A  S  V  L  S  *  L  A  L  C  C   : F  G  C  L  G  S  P  I  F  *  R  A  S  *  S  Q  Y  T  L  A  *  W  T  L  S  S  S  L  V  *  L  Q  G  S  * :   V  E  E  C  A  C  R  D  I  T  E  V  G  S  R  A  R  Q  K  T  V  P  F  P  W  V  M  S  S  C  L  V  I  E  I  I  *  V  Y  P  L  K  L  C  F  F  S  V  S  I  C  S  F  F  P  L  S  Y  H  V  S  V  V  P  L  Y  Y  Y  Y  Y  I  L  F  C  K  S  R  C  R  E  L  I  F  N  K  Y  P  M  F  N  L  C  S  F  L  P  C  S  D  I  S  Y  A  C  N  I  M  W  L  R  I  N  N  L  S  E  R  Y  Y  Y  G  I  A  N  *  *  *  G  D  C  *  Y  G  S  *  D  S   </first_frame>
            <second_frame>  E  M  E  A  A  I  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  R  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  V  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  N  V  V  S  L  K  H  C  F  F  S  T  T  D  K  D  E  L  Y  L  N  L  V  L  E  Y  V  P  E  T  V  H  R  V  I  K  H  Y  N  K  L  N  Q  R  M  P  L  I  L  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  S  Y  I  H  R  T  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  A  I  D  V  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  N  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  S  R  L  L  Q  Y  S  P  N  L  R  C  A  A  :  L  D  A  L  V  H  P  F  F  D  E  L  R  D  P  N  T  R  L  P  N  G  R  F  L  P  P  L  F  N  F  K  A  H   : E  L  K  N  V  H  A  E  I  L  L  K  L  V  P  E  H  A  R  K  Q  C  P  S  L  G  L  *  V  P  A  L  *  *  K  *  F  K  C  T  L  *  S  C  V  S  S  L  Y  Q  F  V  P  S  F  P  Y  L  T  M  S  L  L  S  L  C  I  I  I  I  I  S  C  F  V  K  A  D  V  G  N  *  S  L  T  N  T  R  C  S  T  C  V  P  F  Y  P  V  P  I  Y  P  M  L  V  T  L  C  G  *  E  L  T  I  *  V  N  V  I  I  M  G  L  Q  I  N  D  R  V  T  V  D  M  A  P  K  T  L  </second_frame>
            <third_frame>   K  W  K  Q  Q  L  L  T  V  M  G  L  R  Q  A  T  *  *  *  Q  L  L  V  V  E  M  A  S  Q  S  R :   L  L  V  T  W  L  N  V  L  L  D  K  D  P  L  G  W  C  F  R :   Q  N  A  *  R  L  V  K  L  L  L  L  K  R  F  F  K  I  K  D  I  R  T  E  N  C  R  Q  C  A  F  L  T  T  L  M  L  C  L  S  N  T  A  S  F  P  Q  L  T  R  M  N  C  I  L  T  W  F  L  S  M  Y  L  K  P  F  T  V  L  S  N  T  T  I  S  *  I  K  G  C  R  *  Y  L  *  S  F  I  H  I  R :   F  S  G  H  C  L  T  Y  T  A  L  L  E  C  A  T  G  T  L  N  L  R  I  F  W :   *  I  H  I  P  T  R  L  N  Y  A  I  L  G  V  P  K  F  W :   L  K  E  N  Q  I  F  L  T  S  V  L  G  I  I  E  H  L  S  S  Y  L  V  Q  Q  S  T  L  L  L  *  M  F  G  L  L  A  V  S  *  L  S  Y  F  L  V  S :   H  Y  F  Q  V  K  V  E  L  I  S  L  L  R  S  L  R :   F  *  A  L  L  Q  G  K  K  L  N  V  *  I  P  T  I  M  S  S  N  F  L  K  L  K  L  I  H  G  T  R :   Y  F  I  S  A  C  L  Q  K  Q  L  I  W  S  Q  D  C  F  S  T  L  L  T  C  A  V  L  L :   W  M  P  W  F  T  H  F  L  T  S  F  V  I  P  I  H  A  C  L  M  D  A  F  F  L  P  C  L  T  S  R  L  M  :  S  *  R  M  C  M  Q  R  Y  Y  *  S  W  F  Q  S  T  P  E  N  S  A  L  P  L  G  Y  E  F  L  P  C  D  R  N  N  L  S  V  P  F  E  A  V  F  L  L  C  I  N  L  F  L  L  S  L  I  L  P  C  L  C  C  P  F  V  L  L  L  L  Y  L  V  L  *  K  Q  M  *  G  I  D  L  *  Q  I  P  D  V  Q  P  V  F  L  F  T  L  F  R  Y  I  L  C  L  *  H  Y  V  V  E  N  *  Q  F  E  *  T  L  L  L  W  D  C  K  L  M  I  G  *  L  L  I  W  L  L  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46196" stop="46104"/>
                    <exon start="45919" stop="45860"/>
                    <exon start="45735" stop="45463"/>
                    <exon start="45105" stop="45031"/>
                    <exon start="44078" stop="44022"/>
                    <exon start="43892" stop="43752"/>
                    <exon start="43656" stop="43606"/>
                    <exon start="42510" stop="42415"/>
                    <exon start="42323" stop="42240"/>
                    <exon start="41924" stop="41822"/>
                    <exon start="41735" stop="41653"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEAAIVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLILVKLYTYQIFRALSYIHRTIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCAALDALVHPFFDELRDPNTRLPNGRFLPPLFNFKAHELKNVHAEILLKLVPEHARKQCPSLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41623" stop="41360"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPLKLCFFSVSICSFFPLSYHVSVVPLYYYYYILFCKSRCRELIFNKYPMFNLCSFLPCSDISYACNIMWLRINNLSERYYYGIAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46095" e_stop="46092"/>
            <exon e_start="45919" e_stop="45860"/>
            <exon e_start="45735" e_stop="45463"/>
            <exon e_start="45105" e_stop="45031"/>
            <exon e_start="44078" e_stop="44022"/>
            <exon e_start="43892" e_stop="43752"/>
            <exon e_start="43656" e_stop="43606"/>
            <exon e_start="42510" e_stop="42415"/>
            <exon e_start="42323" e_stop="42240"/>
            <exon e_start="41924" e_stop="41822"/>
            <exon e_start="41735" e_stop="41322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.686" acc_prob="0.997" e_score="0.500"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="46095" e_stop="46092" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.686" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46091" i_stop="45920" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="45860" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45735" e_stop="45463" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45105" e_stop="45031" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44078" e_stop="44022" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.855" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43892" e_stop="43752" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43656" e_stop="43606" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42510" e_stop="42415" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.915" acc_prob="0.954">
            <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42323" e_stop="42240" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.974" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41924" e_stop="41822" e_length="103"/>
          </exon>
          <intron i_serial="10" don_prob="0.980" acc_prob="0.895">
            <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41735" e_stop="41322" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46095" stop="46092"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45656" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45652" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45646" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45623" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45614" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45597" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45583" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45580" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45550" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45520" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45494" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45481" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45078" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43890" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43824" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43813" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43781" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43779" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43763" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42466" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42450" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42279" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42274" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42262" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42261" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42258" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366462" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41919" stop="41822"/>
              <exon start="41735" stop="41322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41887" stop="41822"/>
              <exon start="41735" stop="41438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41886" stop="41822"/>
              <exon start="41735" stop="41342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204958" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41824" stop="41822"/>
              <exon start="41735" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41674" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCT : ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG : GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG : ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG : GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG : GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG : CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG : GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG : ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT : TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG : AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAAGACTCTTG</gDNA_template>
            <first_frame> L   : Y  Y  *  L  H  G  *  T  C  C  W  T  R  I  L  W  G  G  V  S   : G  K  M  L  R  D  W  *  N  C  C  Y  *  K  G  S  S  R  *  K  I  *  E  P  R  I  A  D  N  A  P  S  *  P  P  *  C  C  V  S  Q  T  L  L  L  F  H  N  *  Q  G  *  T  V  S  *  L  G  S  *  V  C  T  *  N  R  S  P  C  Y  Q  T  L  Q  *  A  E  S  K  D  A  V  D  T  C  E  A  L  Y  I  S   : D  F  Q  G  I  V  L  H  T  P  H  Y  W  S  V  P  Q  G  H  *  T  S  E  S  F   : G  E  S  T  Y  P  P  G  *  I  M  R  F  W  E  C  Q  S  S   : G  *  R  R  T  K  Y  F  L  H  L  F  *  V  L  S  S  T  *  A  H  I  W  C  N  R  V  H  Y  C  Y  R  C  L  V  C  W  L  C  P  S  *  A  T  S  W  S   : A  I  I  S  R  *  K  W  S  *  S  A  C  *  D  H  *   : G  F  R  H  S  Y  K  G  R  N  *  M  Y  E  S  Q  L  *  *  V  Q  I  S  S  N  *  S  S  S  M  A  Q   : D  I  S  *  A  H  A  S  R  S  S  *  S  G  L  K  T  A  S  V  L  S  *  L  A  L  C  C   : F  G  C  L  G  S  P  I  F  *  R  A  S  *  S  Q  Y  T  L  A  *  W  T  L  S  S  S  L  V  *  L  Q  G  S  * :   V  E  E  C  A  C  R  D  I  T  E  V  G  S  R  A  R  Q  K  T  V  P  F  P  W  V  M  S  S  C  L  V  I  E  I  I  *  V  Y  P  L  K  L  C  F  F  S  V  S  I  C  S  F  F  P  L  S  Y  H  V  S  V  V  P  L  Y  Y  Y  Y  Y  I  L  F  C  K  S  R  C  R  E  L  I  F  N  K  Y  P  M  F  N  L  C  S  F  L  P  C  S  D  I  S  Y  A  C  N  I  M  W  L  R  I  N  N  L  S  E  R  Y  Y  Y  G  I  A  N  *  *  *  G  D  C  *  Y  G  S  *  D  S   </first_frame>
            <second_frame>  S  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  V  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  N  V  V  S  L  K  H  C  F  F  S  T  T  D  K  D  E  L  Y  L  N  L  V  L  E  Y  V  P  E  T  V  H  R  V  I  K  H  Y  N  K  L  N  Q  R  M  P  L  I  L  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  S  Y  I  H  R  T  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  A  I  D  V  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  N  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  S  R  L  L  Q  Y  S  P  N  L  R  C  A  A  :  L  D  A  L  V  H  P  F  F  D  E  L  R  D  P  N  T  R  L  P  N  G  R  F  L  P  P  L  F  N  F  K  A  H   : E  L  K  N  V  H  A  E  I  L  L  K  L  V  P  E  H  A  R  K  Q  C  P  S  L  G  L  *  V  P  A  L  *  *  K  *  F  K  C  T  L  *  S  C  V  S  S  L  Y  Q  F  V  P  S  F  P  Y  L  T  M  S  L  L  S  L  C  I  I  I  I  I  S  C  F  V  K  A  D  V  G  N  *  S  L  T  N  T  R  C  S  T  C  V  P  F  Y  P  V  P  I  Y  P  M  L  V  T  L  C  G  *  E  L  T  I  *  V  N  V  I  I  M  G  L  Q  I  N  D  R  V  T  V  D  M  A  P  K  T  L  </second_frame>
            <third_frame>   L :   L  L  V  T  W  L  N  V  L  L  D  K  D  P  L  G  W  C  F  R :   Q  N  A  *  R  L  V  K  L  L  L  L  K  R  F  F  K  I  K  D  I  R  T  E  N  C  R  Q  C  A  F  L  T  T  L  M  L  C  L  S  N  T  A  S  F  P  Q  L  T  R  M  N  C  I  L  T  W  F  L  S  M  Y  L  K  P  F  T  V  L  S  N  T  T  I  S  *  I  K  G  C  R  *  Y  L  *  S  F  I  H  I  R :   F  S  G  H  C  L  T  Y  T  A  L  L  E  C  A  T  G  T  L  N  L  R  I  F  W :   *  I  H  I  P  T  R  L  N  Y  A  I  L  G  V  P  K  F  W :   L  K  E  N  Q  I  F  L  T  S  V  L  G  I  I  E  H  L  S  S  Y  L  V  Q  Q  S  T  L  L  L  *  M  F  G  L  L  A  V  S  *  L  S  Y  F  L  V  S :   H  Y  F  Q  V  K  V  E  L  I  S  L  L  R  S  L  R :   F  *  A  L  L  Q  G  K  K  L  N  V  *  I  P  T  I  M  S  S  N  F  L  K  L  K  L  I  H  G  T  R :   Y  F  I  S  A  C  L  Q  K  Q  L  I  W  S  Q  D  C  F  S  T  L  L  T  C  A  V  L  L :   W  M  P  W  F  T  H  F  L  T  S  F  V  I  P  I  H  A  C  L  M  D  A  F  F  L  P  C  L  T  S  R  L  M  :  S  *  R  M  C  M  Q  R  Y  Y  *  S  W  F  Q  S  T  P  E  N  S  A  L  P  L  G  Y  E  F  L  P  C  D  R  N  N  L  S  V  P  F  E  A  V  F  L  L  C  I  N  L  F  L  L  S  L  I  L  P  C  L  C  C  P  F  V  L  L  L  L  Y  L  V  L  *  K  Q  M  *  G  I  D  L  *  Q  I  P  D  V  Q  P  V  F  L  F  T  L  F  R  Y  I  L  C  L  *  H  Y  V  V  E  N  *  Q  F  E  *  T  L  L  L  W  D  C  K  L  M  I  G  *  L  L  I  W  L  L  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46094" stop="46092"/>
                    <exon start="45919" stop="45860"/>
                    <exon start="45735" stop="45463"/>
                    <exon start="45105" stop="45031"/>
                    <exon start="44078" stop="44022"/>
                    <exon start="43892" stop="43752"/>
                    <exon start="43656" stop="43606"/>
                    <exon start="42510" stop="42415"/>
                    <exon start="42323" stop="42240"/>
                    <exon start="41924" stop="41822"/>
                    <exon start="41735" stop="41653"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STISYMAERVVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLILVKLYTYQIFRALSYIHRTIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCAALDALVHPFFDELRDPNTRLPNGRFLPPLFNFKAHELKNVHAEILLKLVPEHARKQCPSLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41623" stop="41360"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPLKLCFFSVSICSFFPLSYHVSVVPLYYYYYILFCKSRCRELIFNKYPMFNLCSFLPCSDISYACNIMWLRINNLSERYYYGIAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="47733" e_stop="47579"/>
            <exon e_start="46482" e_stop="46321"/>
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            <exon e_start="41735" e_stop="41322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
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          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47733" e_stop="47579" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
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          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46482" e_stop="46321" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="1.000">
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          </intron>
          <exon e_serial="3" e_score="1.000">
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          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="45883" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
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          </intron>
          <exon e_serial="5" e_score="1.000">
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          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
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          </intron>
          <exon e_serial="6" e_score="1.000">
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          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.995">
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          </intron>
          <exon e_serial="7" e_score="1.000">
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          </exon>
          <intron i_serial="7" don_prob="0.855" acc_prob="0.985">
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          </intron>
          <exon e_serial="8" e_score="1.000">
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          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.998">
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          </intron>
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          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
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          </intron>
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          </exon>
          <intron i_serial="10" don_prob="0.915" acc_prob="0.954">
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          </intron>
          <exon e_serial="11" e_score="1.000">
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          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.994">
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          </intron>
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          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.895">
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          </intron>
          <exon e_serial="13" e_score="1.000">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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              <exon start="46196" stop="46144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47722" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="46196" stop="46119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47706" stop="47579"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47682" stop="47579"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47658" stop="47579"/>
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              <exon start="45919" stop="45889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47651" stop="47579"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332711" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45580" stop="45463"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212944" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E204266" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E361327" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45494" stop="45463"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211312" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45481" stop="45463"/>
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            <referenceDNA id="SGN-E249509" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264581" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E272477" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E210722" strand="+"/>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E200303" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E274033" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E308392" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238008" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E288306" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E355162" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E303646" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E303592" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E366462" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41919" stop="41822"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41887" stop="41822"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41886" stop="41822"/>
              <exon start="41735" stop="41342"/>
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            <referenceDNA id="SGN-E204958" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41824" stop="41822"/>
              <exon start="41735" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41674" stop="41330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG : GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG : GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG : ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAG : GATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG : ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG : GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG : GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG : CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG : GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG : ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT : TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG : AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCTAAGACTCTTG</gDNA_template>
            <first_frame> S  F  S  L  S  I  N  I  R  F  F  F  L  S  L  Y  L  F  F  S  L  M  V  M  V  S  S  P  P  Q  F  L  S  E  D  R  R  *  S  V  F  F  S  V  S  S  T  F  *  F  F  R :   *  M  T  F  C  G  D  N  *  *  A  D  F  S  W  K  W  L  P  W  A  *  H  L  H  R  V  *  E  N  P  V  A  I  M  L  G  *  I  G  C  L  R  R  *  M  T  *  E  S  G  M  I  R :   K  W  K  Q  Q  L  L  T  V  M  G  L  R  Q  A  T  *  *  *  Q  L  L  V  V  E  M  A  S  Q  S  R :   L  L  V  T  W  L  N  V  L  L  D  K  :  D  E  L  Y  L  N  L  V  L  E  Y  V  P  E  T  V  H  R  V  I  K  H  Y  N  K  L  N  Q  R  M  P  L  I  L  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  S  Y  I  H  R  T  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  A  I  D  V  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  N  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  S  R  L  L  Q  Y  S  P  N  L  R  C  A  A  :  L  D  A  L  V  H  P  F  F  D  E  L  R  D  P  N  T  R  L  P  N  G  R  F  L  P  P  L  F  N  F  K  A  H   : E  L  K  N  V  H  A  E  I  L  L  K  L  V  P  E  H  A  R  K  Q  C  P  S  L  G  L  *  V  P  A  L  *  *  K  *  F  K  C  T  L  *  S  C  V  S  S  L  Y  Q  F  V  P  S  F  P  Y  L  T  M  S  L  L  S  L  C  I  I  I  I  I  S  C  F  V  K  A  D  V  G  N  *  S  L  T  N  T  R  C  S  T  C  V  P  F  Y  P  V  P  I  Y  P  M  L  V  T  L  C  G  *  E  L  T  I  *  V  N  V  I  I  M  G  L  Q  I  N  D  R  V  T  V  D  M  A  P  K  T  L  </first_frame>
            <second_frame>  L  S  L  S  Q  S  I  S  G  S  S  F  S  L  C  I  S  F  S  L  S  W  *  W  Y  H  L  R  H  N  F  Y  R  R  T  A  G  D  R  C  F  S  P  S  P  Q  H  F  D  S  F   : G  E  *  P  F  V  V  I  T  S  K  Q  T  F  L  G  N  G  F  R  G  L  S  T  Y  I  G  F  E  R  I  Q  W  P  *  C  W  G  R  *  V  A  *  G  D  E  *  H  E  N  Q  G  *  *   : G  N  G  S  S  N  C  *  R  *  W  D  *  D  R  P  H  N  S  D  N  Y  W  W  *  K  W  P  A  K  A   : D  Y  *  L  H  G  *  T  C  C  W  T  R :   M  N  C  I  L  T  W  F  L  S  M  Y  L  K  P  F  T  V  L  S  N  T  T  I  S  *  I  K  G  C  R  *  Y  L  *  S  F  I  H  I  R :   F  S  G  H  C  L  T  Y  T  A  L  L  E  C  A  T  G  T  L  N  L  R  I  F  W :   *  I  H  I  P  T  R  L  N  Y  A  I  L  G  V  P  K  F  W :   L  K  E  N  Q  I  F  L  T  S  V  L  G  I  I  E  H  L  S  S  Y  L  V  Q  Q  S  T  L  L  L  *  M  F  G  L  L  A  V  S  *  L  S  Y  F  L  V  S :   H  Y  F  Q  V  K  V  E  L  I  S  L  L  R  S  L  R :   F  *  A  L  L  Q  G  K  K  L  N  V  *  I  P  T  I  M  S  S  N  F  L  K  L  K  L  I  H  G  T  R :   Y  F  I  S  A  C  L  Q  K  Q  L  I  W  S  Q  D  C  F  S  T  L  L  T  C  A  V  L  L :   W  M  P  W  F  T  H  F  L  T  S  F  V  I  P  I  H  A  C  L  M  D  A  F  F  L  P  C  L  T  S  R  L  M  :  S  *  R  M  C  M  Q  R  Y  Y  *  S  W  F  Q  S  T  P  E  N  S  A  L  P  L  G  Y  E  F  L  P  C  D  R  N  N  L  S  V  P  F  E  A  V  F  L  L  C  I  N  L  F  L  L  S  L  I  L  P  C  L  C  C  P  F  V  L  L  L  L  Y  L  V  L  *  K  Q  M  *  G  I  D  L  *  Q  I  P  D  V  Q  P  V  F  L  F  T  L  F  R  Y  I  L  C  L  *  H  Y  V  V  E  N  *  Q  F  E  *  T  L  L  L  W  D  C  K  L  M  I  G  *  L  L  I  W  L  L  R  L  L </second_frame>
            <third_frame>   F  L  S  L  N  Q  Y  Q  V  L  L  S  L  F  V  S  L  F  L  S  H  G  D  G  I  I  S  A  T  I  F  I  G  G  P  P  V  I  G  V  F  L  R  L  L  N  I  L  I  L  S  :  V  N  D  L  L  W  *  *  L  V  S  R  L  F  L  E  M  A  S  V  G  L  A  P  T  S  G  L  R  E  S  S  G  H  N  A  G  V  D  R  L  P  E  E  M  N  D  M  R  I  R  D  D  K  :  E  M  E  A  A  I  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  R  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q   : G  *  T  V  S  *  L  G  S  *  V  C  T  *  N  R  S  P  C  Y  Q  T  L  Q  *  A  E  S  K  D  A  V  D  T  C  E  A  L  Y  I  S   : D  F  Q  G  I  V  L  H  T  P  H  Y  W  S  V  P  Q  G  H  *  T  S  E  S  F   : G  E  S  T  Y  P  P  G  *  I  M  R  F  W  E  C  Q  S  S   : G  *  R  R  T  K  Y  F  L  H  L  F  *  V  L  S  S  T  *  A  H  I  W  C  N  R  V  H  Y  C  Y  R  C  L  V  C  W  L  C  P  S  *  A  T  S  W  S   : A  I  I  S  R  *  K  W  S  *  S  A  C  *  D  H  *   : G  F  R  H  S  Y  K  G  R  N  *  M  Y  E  S  Q  L  *  *  V  Q  I  S  S  N  *  S  S  S  M  A  Q   : D  I  S  *  A  H  A  S  R  S  S  *  S  G  L  K  T  A  S  V  L  S  *  L  A  L  C  C   : F  G  C  L  G  S  P  I  F  *  R  A  S  *  S  Q  Y  T  L  A  *  W  T  L  S  S  S  L  V  *  L  Q  G  S  * :   V  E  E  C  A  C  R  D  I  T  E  V  G  S  R  A  R  Q  K  T  V  P  F  P  W  V  M  S  S  C  L  V  I  E  I  I  *  V  Y  P  L  K  L  C  F  F  S  V  S  I  C  S  F  F  P  L  S  Y  H  V  S  V  V  P  L  Y  Y  Y  Y  Y  I  L  F  C  K  S  R  C  R  E  L  I  F  N  K  Y  P  M  F  N  L  C  S  F  L  P  C  S  D  I  S  Y  A  C  N  I  M  W  L  R  I  N  N  L  S  E  R  Y  Y  Y  G  I  A  N  *  *  *  G  D  C  *  Y  G  S  *  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46138" stop="46104"/>
                    <exon start="45919" stop="45883"/>
                    <exon start="45585" stop="45463"/>
                    <exon start="45105" stop="45031"/>
                    <exon start="44078" stop="44022"/>
                    <exon start="43892" stop="43752"/>
                    <exon start="43656" stop="43606"/>
                    <exon start="42510" stop="42415"/>
                    <exon start="42323" stop="42240"/>
                    <exon start="41924" stop="41822"/>
                    <exon start="41735" stop="41653"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLVVEMASQSRLLVTWLNVLLDKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLILVKLYTYQIFRALSYIHRTIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCAALDALVHPFFDELRDPNTRLPNGRFLPPLFNFKAHELKNVHAEILLKLVPEHARKQCPSLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41623" stop="41360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPLKLCFFSVSICSFFPLSYHVSVVPLYYYYYILFCKSRCRELIFNKYPMFNLCSFLPCSDISYACNIMWLRINNLSERYYYGIAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="58492" PGL_stop="54124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58492" e_stop="58238"/>
            <exon e_start="57406" e_stop="57248"/>
            <exon e_start="55217" e_stop="55056"/>
            <exon e_start="54493" e_stop="54124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58492" e_stop="58238" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58237" i_stop="57407" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57406" e_stop="57248" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55217" e_stop="55056" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="55055" i_stop="54494" i_length="562"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54493" e_stop="54124" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58492" stop="58238"/>
              <exon start="57406" stop="57248"/>
              <exon start="55217" stop="55056"/>
              <exon start="54493" stop="54130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58343" stop="58238"/>
              <exon start="57406" stop="57248"/>
              <exon start="55217" stop="55056"/>
              <exon start="54493" stop="54124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57343" stop="57248"/>
              <exon start="55217" stop="55056"/>
              <exon start="54493" stop="54130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGGAACAATGTTTAATTCCCTCTTCACATGGATATCATCATCGTCCTTGGCATTTATATATGGGCATGATGAAAGCAATAACGAGGAGTATTTGTCTATCAATGGAAGAGAATATCCTCGCAAAATTGTGTTATCTGATGGCCGGTCAACTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATG : GTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG : GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAG : GAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTTAAATCCAAGAACTGTTTGTCTCCAAATATTC</gDNA_template>
            <first_frame> F  G  T  M  F  N  S  L  F  T  W  I  S  S  S  S  L  A  F  I  Y  G  H  D  E  S  N  N  E  E  Y  L  S  I  N  G  R  E  Y  P  R  K  I  V  L  S  D  G  R  S  T  E  I  K  Q  T  L  A  G  C  L  A  R  A  L  P  G  L  V  A  D  L  R  L  P  V  P  I  S  T  L  E  Q  G  M  :  V  L  L  L  N  T  M  S  F  V  D  P  L  P  A  F  R  M  K  Q  W  Q  L  I  V  L  L  F  L  D  A  L  S  V  C  R  I  P  T  L  T  P  Y  M  T  G  R  R  T  S  F  P  K  :  V  L  D  G  A  Q  I  S  A  A  E  Y  E  I  M  K  D  L  I  I  P  L  G  R  V  P  Q  F  S  M  Q  S  G  G  *  F  D  M  K  *  L  L  W  T  L  S  Y  K  P  S  W  *  K  E  :  E  L  H  R  A  V  V  *  Y  N  L  Q  Q  V  L  *  S  *  *  E  L  I  L  P  P  F  H  Q  Q  H  I  F  V  L  S  L  Y  P  L  V  E  T  L  F  S  L  A  R  F  D  I  M  F  T  A  V  I  P  L  S  W  R  L  V  I  W  K  L  *  F  H  F  F  S  V  *  R  F  G  Q  S  F  L  P  T  C  A  V  M  *  K  S  S  D  V  F  C  E  V  *  I  *  L  *  N  R  T  I  I  F  L  C  F  K  S  K  N  C  L  S  P  N  I  </first_frame>
            <second_frame>  S  E  Q  C  L  I  P  S  S  H  G  Y  H  H  R  P  W  H  L  Y  M  G  M  M  K  A  I  T  R  S  I  C  L  S  M  E  E  N  I  L  A  K  L  C  Y  L  M  A  G  Q  L  R  L  S  R  L  *  L  A  V  L  L  E  H  C  R  D  W  L  L  T  L  G  C  L  Y  R  Y  Q  L  *  S  K  E  W :   F  S  S  *  I  Q  C  L  L  W  I  H  S  L  H  S  E  *  S  N  G  N  L  L  Y  F  C  F  L  M  L  F  L  Y  V  G  Y  P  H  *  L  H  I  *  R  G  E  G  L  R  F  Q  R :   C  L  M  V  L  R  *  A  Q  R  N  M  R  S  *  K  I  *  S  F  H  *  V  E  C  L  S  S  Q  C  K  V  E  A  S  L  T  *  N  S  C  C  G  P  S  P  I  N  L  H  G  R  K  R :   N  C  T  E  L  L  F  N  T  I  Y  S  K  S  S  N  P  D  R  S  *  F  C  H  L  S  T  S  N  I  S  S  S  C  H  Y  I  L  L  L  K  H  C  L  V  W  Q  G  L  I  S  C  L  L  L  *  S  L  Y  L  G  D  *  *  Y  G  N  C  D  S  T  S  L  V  C  E  D  L  V  N  H  F  Y  L  L  V  Q  S  C  K  N  P  Q  M  C  S  V  R  C  E  Y  N  F  K  I  E  L  L  F  F  C  V  L  N  P  R  T  V  C  L  Q  I  F </second_frame>
            <third_frame>   R  N  N  V  *  F  P  L  H  M  D  I  I  I  V  L  G  I  Y  I  W  A  *  *  K  Q  *  R  G  V  F  V  Y  Q  W  K  R  I  S  S  Q  N  C  V  I  *  W  P  V  N  *  D  *  A  D  S  S  W  L  S  C  S  S  I  A  G  I  G  C  *  P  *  A  A  C  T  D  I  N  F  R  A  R  N   : G  S  P  L  K  Y  N  V  F  C  G  S  T  P  C  I  P  N  E  A  M  A  T  Y  C  T  S  V  S  *  C  S  F  C  M  *  D  T  H  T  D  S  I  Y  D  G  A  K  D  F  V  S  K   : G  A  *  W  C  S  D  K  R  S  G  I  *  D  H  E  R  S  D  H  S  T  R  S  S  A  S  V  L  N  A  K  W  R  L  V  *  H  E  I  A  V  V  D  P  L  L  *  T  F  M  V  E  R   : G  T  A  Q  S  C  C  L  I  Q  F  T  A  S  P  L  I  L  I  G  V  D  F  A  T  F  P  P  A  T  Y  L  R  P  V  I  I  S  S  C  *  N  I  V  *  F  G  K  V  *  Y  H  V  Y  C  C  D  P  S  I  L  E  T  S  D  M  E  T  V  I  P  L  L  *  C  V  K  I  W  S  I  I  F  T  Y  L  C  S  H  V  K  I  L  R  C  V  L  *  G  V  N  I  T  L  K  *  N  Y  Y  F  S  V  F  *  I  Q  E  L  F  V  S  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58492" stop="58238"/>
                    <exon start="57406" stop="57248"/>
                    <exon start="55217" stop="55113"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGTMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGREYPRKIVLSDGRSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLIIPLGRVPQFSMQSGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57396" e_stop="57248"/>
            <exon e_start="55217" e_stop="54830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57396" e_stop="57248" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55217" e_stop="54830" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57396" stop="57248"/>
              <exon start="55217" stop="54830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274519" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG : GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAGGTTGTGAAAGTAGACTTGAAAGTGTGCACATACCGCAAAATTATATATGTTTGTTGCAACTTCTCTTCATATCTGCTTATGTTATAGAATTTGCTATGTTGTCAAGACACTGATGATTGATGATAAGTGAAAAATGTAAAGTAAGTATTTACTCCATTTCCCTCTGGCTTTTTTAAAAAAATTATGACAGCTATCGTCTATGTGGAGTAAATTAGTTTTTTTAACC</gDNA_template>
            <first_frame> *  I  Q  C  L  L  W  I  H  S  L  H  S  E  *  S  N  G  N  L  L  Y  F  C  F  L  M  L  F  L  Y  V  G  Y  P  H  *  L  H  I  *  R  G  E  G  L  R  F  Q  R :   C  L  M  V  L  R  *  A  Q  R  N  M  R  S  *  K  I  *  S  F  H  *  V  E  C  L  S  S  Q  C  K  V  E  A  S  L  T  *  N  S  C  C  G  P  S  P  I  N  L  H  G  R  K  R  L  *  K  *  T  *  K  C  A  H  T  A  K  L  Y  M  F  V  A  T  S  L  H  I  C  L  C  Y  R  I  C  Y  V  V  K  T  L  M  I  D  D  K  *  K  M  *  S  K  Y  L  L  H  F  P  L  A  F  L  K  K  L  *  Q  L  S  S  M  W  S  K  L  V  F  L  T </first_frame>
            <second_frame>  K  Y  N  V  F  C  G  S  T  P  C  I  P  N  E  A  M  A  T  Y  C  T  S  V  S  *  C  S  F  C  M  *  D  T  H  T  D  S  I  Y  D  G  A  K  D  F  V  S  K   : G  A  *  W  C  S  D  K  R  S  G  I  *  D  H  E  R  S  D  H  S  T  R  S  S  A  S  V  L  N  A  K  W  R  L  V  *  H  E  I  A  V  V  D  P  L  L  *  T  F  M  V  E  R  G  C  E  S  R  L  E  S  V  H  I  P  Q  N  Y  I  C  L  L  Q  L  L  F  I  S  A  Y  V  I  E  F  A  M  L  S  R  H  *  *  L  M  I  S  E  K  C  K  V  S  I  Y  S  I  S  L  W  L  F  *  K  N  Y  D  S  Y  R  L  C  G  V  N  *  F  F  *   </second_frame>
            <third_frame>   N  T  M  S  F  V  D  P  L  P  A  F  R  M  K  Q  W  Q  L  I  V  L  L  F  L  D  A  L  S  V  C  R  I  P  T  L  T  P  Y  M  T  G  R  R  T  S  F  P  K  :  V  L  D  G  A  Q  I  S  A  A  E  Y  E  I  M  K  D  L  I  I  P  L  G  R  V  P  Q  F  S  M  Q  S  G  G  *  F  D  M  K  *  L  L  W  T  L  S  Y  K  P  S  W  *  K  E  V  V  K  V  D  L  K  V  C  T  Y  R  K  I  I  Y  V  C  C  N  F  S  S  Y  L  L  M  L  *  N  L  L  C  C  Q  D  T  D  D  *  *  *  V  K  N  V  K  *  V  F  T  P  F  P  S  G  F  F  K  K  I  M  T  A  I  V  Y  V  E  *  I  S  F  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57394" stop="57248"/>
                    <exon start="55217" stop="55113"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTMSFVDPLPAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLIIPLGRVPQFSMQSGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="59411" PGL_stop="58771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59411" e_stop="58771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59411" e_stop="58771" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59411" stop="58854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59410" stop="58771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTTAGTGTCCAAAGCCGGGATTGTAATATTGCCACCTTCACAAGAAGTGGATGAAGCAATACTTCAGGAGACTGATGAGATGCTTG</gDNA_template>
            <first_frame> Q  V  D  A  L  Q  L  R  S  G  E  E  T  E  K  S  D  K  N  T  R  F  L  K  V  D  K  F  N  S  G  E  V  S  S  G  P  S  Q  H  D  V  K  N  K  S  V  L  I  M  S  D  D  G  R  K  Y  A  S  H  G  E  H  D  K  L  K  S  S  L  K  S  S  N  S  K  K  M  S  R  S  V  T  W  A  D  E  S  I  D  G  G  I  G  K  K  T  E  S  S  S  K  I  S  E  Y  E  S  Q  A  Y  G  G  S  A  S  T  D  M  E  E  N  D  D  S  Y  R  F  E  S  A  E  A  C  A  A  A  L  S  Q  A  A  E  A  V  A  S  G  S  D  V  P  D  A  G  M  T  F  S  L  I  L  L  I  R  R  F  A  S  H  T  L  F  A  S  N  C  F  *  V  L  L  H  V  I  F  S  V  Q  S  R  D  C  N  I  A  T  F  T  R  S  G  *  S  N  T  S  G  D  *  *  D  A   </first_frame>
            <second_frame>  K  L  M  P  C  S  C  V  L  E  K  K  Q  K  N  R  I  R  T  L  D  F  *  R  W  T  N  L  I  L  E  K  C  L  L  V  L  P  N  M  M  S  R  T  K  V  S  *  L  C  L  M  T  E  G  N  M  H  H  M  V  N  M  I  S  S  N  L  L  *  N  L  Q  I  P  K  K  C  L  G  Q  S  L  G  L  M  K  V  S  M  V  A  L  A  R  K  Q  R  A  H  P  K  Y  Q  N  M  R  V  K  L  M  G  D  Q  P  L  L  I  W  K  R  M  M  I  H  I  G  L  N  L  Q  K  P  V  Q  Q  H  *  A  K  Q  Q  R  L  L  P  Q  V  L  M  F  L  M  L  V  *  H  F  H  *  S  S  L  L  G  D  L  Q  V  I  L  S  L  H  L  I  A  F  E  F  C  C  M  *  Y  L  V  S  K  A  G  I  V  I  L  P  P  S  Q  E  V  D  E  A  I  L  Q  E  T  D  E  M  L  </second_frame>
            <third_frame>   S  *  C  L  A  V  A  F  W  R  R  N  R  K  I  G  *  E  H  *  I  F  E  G  G  Q  I  *  F  W  R  S  V  F  W  S  F  P  T  *  C  Q  E  Q  K  C  P  N  Y  V  *  *  R  K  E  I  C  I  T  W  *  T  *  *  A  Q  I  F  F  K  I  F  K  F  Q  K  N  V  S  V  S  H  L  G  *  *  K  Y  R  W  W  H  W  Q  E  N  R  E  L  I  Q  N  I  R  I  *  E  S  S  L  W  G  I  S  L  Y  *  Y  G  R  E  *  *  F  I  S  V  *  I  C  R  S  L  C  S  S  T  K  P  S  S  R  G  C  C  L  R  F  *  C  S  *  C  W  Y  D  I  F  I  D  P  P  Y  *  E  I  C  K  S  Y  S  L  C  I  *  L  L  L  S  S  V  A  C  D  I  *  C  P  K  P  G  L  *  Y  C  H  L  H  K  K  W  M  K  Q  Y  F  R  R  L  M  R  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59411" stop="58875"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVDALQLRSGEETEKSDKNTRFLKVDKFNSGEVSSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKLKSSLKSSNSKKMSRSVTWADESIDGGIGKKTESSSKISEYESQAYGGSASTDMEENDDSYRFESAEACAAALSQAAEAVASGSDVPDAGMTFSLILLIRRFASHTLFASNCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62927" PGL_stop="59845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62927" e_stop="62812"/>
            <exon e_start="60403" e_stop="59845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62927" e_stop="62812" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62811" i_stop="60404" i_length="2408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60403" e_stop="59845" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62927" stop="62812"/>
              <exon start="60403" stop="59845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCATTTGTAGAGCTTACAGAGACCTGATTCCTTCGTTGTTCTTGGGGGCGCTGTAGAGAGATTCAATTAAGTTGATGATTTAGGGTGGAATTACCAGTACCTTTTTTCTTTTAAG : TACTTCGGACGAGTTCTCTAATGGCAAAAGGAGAAGCCGTCGCTGTTAAAGATGCTGTCCACAAATTACAACTCTGTCTTCTTGAAGGCATCAAAGATGAAAGCCAACTCATTGCTGCTGGATCTCTGTTGTCTCGGAGTGATTATCAGGATGTAGTGACCGAACGATCAATTGCCAACATGTGTGGTTATCCTCTTTGCAGCAATTCTCTGCCTTCTGAAAGGTCTCGGAAAGGACATTACAGAATATCATTGAAGGAGCATAAAGTTTATGATCTTCATGAAACATACATGTACTGTTCAACAAATTGTGTAGTCAATAGCGGAGCATTTGCTGGTAGCTTGCAGGATGAGAGAAGCTCTACACTGAATCCAGCAAAGCTTAATCAAGTCCTGAATCTATTTAAGGGGTTGCATTTGCATTCCTTAGATGATGTGAAGGAAAATGGAGATCGAGGATCTTCTAAGTTGAAGATCCAGGAAAAAGTGGATTTAAAGGGTGGTGAAGTTTCATTAGAAGAGTGGATGGGTCCATCTAATGCAATTGAAGGCTATGTTCC</gDNA_template>
            <first_frame> A  I  C  R  A  Y  R  D  L  I  P  S  L  F  L  G  A  L  *  R  D  S  I  K  L  M  I  *  G  G  I  T  S  T  F  F  L  L  S :   T  S  D  E  F  S  N  G  K  R  R  S  R  R  C  *  R  C  C  P  Q  I  T  T  L  S  S  *  R  H  Q  R  *  K  P  T  H  C  C  W  I  S  V  V  S  E  *  L  S  G  C  S  D  R  T  I  N  C  Q  H  V  W  L  S  S  L  Q  Q  F  S  A  F  *  K  V  S  E  R  T  L  Q  N  I  I  E  G  A  *  S  L  *  S  S  *  N  I  H  V  L  F  N  K  L  C  S  Q  *  R  S  I  C  W  *  L  A  G  *  E  K  L  Y  T  E  S  S  K  A  *  S  S  P  E  S  I  *  G  V  A  F  A  F  L  R  *  C  E  G  K  W  R  S  R  I  F  *  V  E  D  P  G  K  S  G  F  K  G  W  *  S  F  I  R  R  V  D  G  S  I  *  C  N  *  R  L  C  S </first_frame>
            <second_frame>  P  F  V  E  L  T  E  T  *  F  L  R  C  S  W  G  R  C  R  E  I  Q  L  S  *  *  F  R  V  E  L  P  V  P  F  F  F  *   : V  L  R  T  S  S  L  M  A  K  G  E  A  V  A  V  K  D  A  V  H  K  L  Q  L  C  L  L  E  G  I  K  D  E  S  Q  L  I  A  A  G  S  L  L  S  R  S  D  Y  Q  D  V  V  T  E  R  S  I  A  N  M  C  G  Y  P  L  C  S  N  S  L  P  S  E  R  S  R  K  G  H  Y  R  I  S  L  K  E  H  K  V  Y  D  L  H  E  T  Y  M  Y  C  S  T  N  C  V  V  N  S  G  A  F  A  G  S  L  Q  D  E  R  S  S  T  L  N  P  A  K  L  N  Q  V  L  N  L  F  K  G  L  H  L  H  S  L  D  D  V  K  E  N  G  D  R  G  S  S  K  L  K  I  Q  E  K  V  D  L  K  G  G  E  V  S  L  E  E  W  M  G  P  S  N  A  I  E  G  Y  V   </second_frame>
            <third_frame>   H  L  *  S  L  Q  R  P  D  S  F  V  V  L  G  G  A  V  E  R  F  N  *  V  D  D  L  G  W  N  Y  Q  Y  L  F  S  F  K  :  Y  F  G  R  V  L  *  W  Q  K  E  K  P  S  L  L  K  M  L  S  T  N  Y  N  S  V  F  L  K  A  S  K  M  K  A  N  S  L  L  L  D  L  C  C  L  G  V  I  I  R  M  *  *  P  N  D  Q  L  P  T  C  V  V  I  L  F  A  A  I  L  C  L  L  K  G  L  G  K  D  I  T  E  Y  H  *  R  S  I  K  F  M  I  F  M  K  H  T  C  T  V  Q  Q  I  V  *  S  I  A  E  H  L  L  V  A  C  R  M  R  E  A  L  H  *  I  Q  Q  S  L  I  K  S  *  I  Y  L  R  G  C  I  C  I  P  *  M  M  *  R  K  M  E  I  E  D  L  L  S  *  R  S  R  K  K  W  I  *  R  V  V  K  F  H  *  K  S  G  W  V  H  L  M  Q  L  K  A  M  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62812" stop="59847"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRTSSLMAKGEAVAVKDAVHKLQLCLLEGIKDESQLIAAGSLLSRSDYQDVVTERSIANMCGYPLCSNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAKLNQVLNLFKGLHLHSLDDVKENGDRGSSKLKIQEKVDLKGGEVSLEEWMGPSNAIEGYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="67112" PGL_stop="69918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67112" e_stop="69918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="67112" e_stop="69918" e_length="2807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67112" stop="67850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67206" stop="67980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67937" stop="68321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68207" stop="69134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68207" stop="69091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68208" stop="69052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68715" stop="69395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68716" stop="69342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69077" stop="69911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69142" stop="69918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69142" stop="69851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAATGGATGCAATTTTTCGAGCAATGCAAGATCAGTCAGAGTCAAATGTGCCCGTTGTTGGACACATCGCGAGAGAAGCTCCTGAAGGGAATCTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCTCAATGTGGTTGAAAAGGAGGCACCTGAATTGGTTGCAAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTCCGTGAATCAGGGTTAAACCTCAACGGCAAGAATGATAGAATGCTGAAATCTGGCATGGTTTTTAATGTGTCTCTTGGGTTTCAGAATTTGCAAACAGAGTCTAAAAACCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCTGATACAGTTGTTATTGGTCAAAATGCTCCAGAAGTGGTGACTTCTATGAGTTCTAAAGCCGTAAAAGATGTGGCTTACTCATTCAACGAGGATGAAGAAGAAGAGGAGGAGCAGCCGAAGGTCAAAGCTAAGCCTGTTGCTGCCAATGGACTCTCATCCAAGGCTACACTTAGATCAGTTAACCACGAGACATCAAGGGAGGAACTAAGACGGCAACACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGTCGTCCTCCAGAGAGAAGAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTTAGGTAAAGAGTGC</gDNA_template>
            <first_frame> C  N  G  C  N  F  S  S  N  A  R  S  V  R  V  K  C  A  R  C  W  T  H  R  E  R  S  S  *  R  E  S  F  R  D  M  D  *  E  A  K  E  Y  T  I  S  A  Q  *  C  N  *  W  I  L  *  P  V  C  C  Q  G  Y  R  *  N  Y  E  C  E  E  S  W  L  S  D  F  I  S  D  E  A  L  C  S  P  K  A  R  K  G  Y  R  *  G  E  E  G  V  T  F  F  T  N  G  *  Y  *  K  G  H  T  G  T  C  K  D  *  G  E  V  E  G  R  E  C  R  H  L  L  P  S  N  F  S  E  W  R  R  V  *  S  E  T  K  C  I  K  Q  *  S  E  S  L  L  *  F  N  K  C  D  Y  L  C  N  W  F  S  I  *  *  L  L  L  K  C  C  S  D  L  S  N  *  C  Q  S  N  A  K  Q  G  V  *  S  P  F  E  G  S  *  G  C  N  W  S  S  E  T  R  K  *  G  W  R  C  L  P  S  S  P  Q  C  G  *  K  G  G  T  *  I  G  C  K  F  D  E  I  C  R  N  W  N  W  A  *  V  P  *  I  R  V  K  P  Q  R  Q  E  *  *  N  A  E  I  W  H  G  F  *  C  V  S  W  V  S  E  F  A  N  R  V  *  K  P  Q  N  *  K  N  L  C  F  G  C  *  Y  S  C  Y  W  S  K  C  S  R  S  G  D  F  Y  E  F  *  S  R  K  R  C  G  L  L  I  Q  R  G  *  R  R  R  G  G  A  A  E  G  Q  S  *  A  C  C  C  Q  W  T  L  I  Q  G  Y  T  *  I  S  *  P  R  D  I  K  G  G  T  K  T  A  T  P  G  R  I  G  P  P  K  E  R  R  N  C  T  K  A  H  R  R  K  F  W  G  C  R  *  P  W  F  C  E  S  H  W  R  F  A  C  I  *  E  H  *  *  S  A  T  S  K  R  I  D  D  S  G  *  P  A  E  *  G  Y  S  F  T  Y  S  W  Y  H  D  S  I  P  Y  C  H  R  E  K  C  I  *  S  T  R  Y  *  P  Y  L  L  Y  P  N  N  V  Q  C  S  W  H  S  I  H  S  S  *  H  K  Y  S  K  V  P  G  I  N  I  C  *  R  S  F  I  S  F  Q  G  P  K  A  H  H  *  S  G  S  T  N  K  N  P  P  Q  A  G  C  L  *  R  I  R  E  S  *  E  S  N  F  S  N  T  R  E  T  S  S  C  W  S  Q  I  *  T  N  Q  V  V  R  S  V  D  S  S  S  I  W  W  S  R  E  K  A  S  W  Y  S  R  G  S  H  K  W  I  P  V  W  N  F  K  A  R  *  E  S  G  C  Y  V  W  *  H  Q  T  R  I  L  P  A  S  R  K  G  D  D  Y  S  P  P  L  S  P  A  Q  S  H  N  G  G  E  Q  E  N  Q  G  R  A  V  L  C  *  S  D  G  R  C  A  D  N  W  G  W  K  K  I  C  L  *  S  *  *  D  *  G  G  T  A  *  K  G  *  E  K  Q  D  *  H  G  I  S  N  I  C  E  *  G  K  *  P  L  D  P  A  S  V  *  R  A  *  F  G  V  *  S  A  V  E  R  T  W  I  P  R  G  T  P  Q  V  N  S  F  Y  S  P  N  I  *  L  P  C  *  A  R  R  D  T  I  C  C  D  H  S  L  *  D  *  D  S  Q  L  G  E  G  W  S  R  A  E  E  F  *  H  D  N  Y  I  Q  G  L  Q  K  R  C  Y  A  N  *  F  Y  P  F  N  F  S  *  W  H  Q  G  V  A  R  Y  N  *  P  *  V  L  *  E  Q  A  E  S  E  L  A  S  D  T  E  N  N  Y  *  *  S  G  R  V  H  R  E  W  W  M  G  I  F  E  F  R  R  Y  *  F  G  I  *  E  L  T  G  V  *  S  R  I  *  T  F  R  C  R  A  R  L  I  R  R  G  R  *  *  K  R  I  T  S  *  V  R  *  *  *  R  G  G  L  *  G  I  F  R  R  R  R  E  N  M  G  R  A  G  K  R  S  K  Q  C  R  Q  R  E  R  G  *  I  R  Q  *  Q  *  *  E  E  E  E  Y  E  A  F  W  E  R  S  S  S  R  E  K  K  S  L  *  Q  H  F  Q  E  T  Q  V  *  V  K  S   </first_frame>
            <second_frame>  A  M  D  A  I  F  R  A  M  Q  D  Q  S  E  S  N  V  P  V  V  G  H  I  A  R  E  A  P  E  G  N  L  L  E  T  W  T  E  K  L  K  N  T  Q  F  Q  L  S  D  V  T  N  G  F  S  D  L  F  A  V  K  D  T  A  E  I  M  N  V  K  K  A  G  Y  L  T  S  S  V  M  K  H  F  V  V  P  K  L  E  R  V  I  D  E  E  K  K  V  S  H  S  S  L  M  D  D  T  E  K  V  I  L  E  P  A  K  I  K  V  K  L  K  A  E  N  V  D  I  C  Y  P  P  I  F  Q  S  G  G  E  F  D  L  R  P  S  A  S  S  N  D  Q  N  L  Y  Y  D  S  T  S  V  I  I  C  A  I  G  S  R  Y  N  S  Y  C  S  N  V  A  R  T  F  L  I  D  A  N  P  M  Q  S  K  A  Y  E  V  L  L  K  A  H  E  A  A  I  G  A  L  R  P  G  N  K  A  G  D  V  Y  Q  A  A  L  N  V  V  E  K  E  A  P  E  L  V  A  N  L  T  R  S  A  G  T  G  I  G  L  E  F  R  E  S  G  L  N  L  N  G  K  N  D  R  M  L  K  S  G  M  V  F  N  V  S  L  G  F  Q  N  L  Q  T  E  S  K  N  P  K  T  E  K  I  C  V  L  V  A  D  T  V  V  I  G  Q  N  A  P  E  V  V  T  S  M  S  S  K  A  V  K  D  V  A  Y  S  F  N  E  D  E  E  E  E  E  E  Q  P  K  V  K  A  K  P  V  A  A  N  G  L  S  S  K  A  T  L  R  S  V  N  H  E  T  S  R  E  E  L  R  R  Q  H  Q  A  E  L  A  R  Q  K  N  E  E  T  A  R  R  L  T  G  G  S  S  G  G  A  D  S  R  G  S  A  K  A  T  G  D  L  L  A  Y  K  N  I  N  D  L  P  P  P  R  E  L  M  I  Q  V  D  Q  R  S  E  A  I  L  L  P  I  H  G  T  M  I  P  F  H  I  A  T  V  K  S  V  S  S  Q  Q  D  T  N  R  T  C  Y  I  R  I  M  F  N  V  P  G  T  P  F  T  P  H  D  T  N  T  L  K  F  Q  G  S  I  Y  V  K  E  V  S  F  R  S  K  D  P  R  H  I  T  E  V  V  Q  Q  I  R  T  L  R  R  Q  V  V  S  R  E  S  E  R  A  E  R  A  T  L  V  T  Q  E  K  L  Q  V  A  G  A  K  F  K  P  I  K  L  S  D  L  W  I  R  P  V  F  G  G  R  G  R  K  L  P  G  T  L  E  A  H  T  N  G  F  R  Y  G  T  S  R  P  D  E  R  V  D  V  M  Y  G  N  I  K  H  A  F  F  Q  P  A  E  K  E  M  I  T  V  L  H  F  H  L  H  N  H  I  M  V  G  N  K  K  T  K  D  V  Q  F  Y  V  E  V  M  D  V  V  Q  T  I  G  G  G  K  R  S  A  Y  D  P  D  E  I  E  E  E  Q  R  E  R  D  R  K  N  K  I  N  M  E  F  Q  T  F  V  N  K  V  N  D  L  W  T  Q  P  Q  F  K  G  L  D  L  E  F  D  Q  P  L  R  E  L  G  F  H  G  V  P  H  K  S  T  A  F  I  V  P  T  S  S  C  L  V  E  L  V  E  T  P  F  V  V  I  T  L  C  E  I  E  I  V  N  L  E  R  V  G  L  G  Q  K  N  F  D  M  T  I  I  F  K  D  F  K  R  D  V  M  R  I  D  S  I  P  S  T  S  L  D  G  I  K  E  W  L  D  T  T  D  L  K  Y  Y  E  S  R  L  N  L  N  W  R  Q  I  L  K  T  I  T  D  D  P  E  E  F  I  E  N  G  G  W  E  F  L  N  L  E  G  T  D  S  E  S  E  N  S  Q  E  S  D  Q  G  Y  E  P  S  D  V  E  P  V  S  S  D  E  E  D  D  E  S  A  S  L  V  E  S  D  D  D  E  G  E  D  S  E  E  Y  S  E  E  E  G  K  T  W  E  E  L  E  R  E  A  S  N  A  D  R  E  K  G  A  E  S  D  S  D  N  D  R  K  R  R  N  M  K  P  F  G  K  G  R  P  P  E  R  R  N  L  S  S  N  I  S  K  R  P  R  F  R  *  R  V  </second_frame>
            <third_frame>   Q  W  M  Q  F  F  E  Q  C  K  I  S  Q  S  Q  M  C  P  L  L  D  T  S  R  E  K  L  L  K  G  I  F  *  R  H  G  L  R  S  *  R  I  H  N  F  S  S  V  M  *  L  M  D  S  L  T  C  L  L  S  R  I  P  L  K  L  *  M  *  R  K  L  A  I  *  L  H  Q  *  *  S  T  L  *  S  Q  S  *  K  G  L  S  M  R  R  R  R  C  H  I  L  H  *  W  M  I  L  K  R  S  Y  W  N  L  Q  R  L  R  *  S  *  R  Q  R  M  S  T  S  V  T  L  Q  F  F  R  V  E  E  S  L  I  *  D  Q  V  H  Q  A  M  I  R  I  F  T  M  I  Q  Q  V  *  L  S  V  Q  L  V  L  D  I  I  V  T  A  Q  M  L  L  G  P  F  *  L  M  P  I  Q  C  K  A  R  R  M  K  S  F  *  R  L  M  R  L  Q  L  E  L  *  D  Q  E  I  R  L  E  M  S  T  K  Q  P  S  M  W  L  K  R  R  H  L  N  W  L  Q  I  *  R  D  L  Q  E  L  E  L  G  L  S  S  V  N  Q  G  *  T  S  T  A  R  M  I  E  C  *  N  L  A  W  F  L  M  C  L  L  G  F  R  I  C  K  Q  S  L  K  T  P  K  L  K  K  F  V  F  W  L  L  I  Q  L  L  L  V  K  M  L  Q  K  W  *  L  L  *  V  L  K  P  *  K  M  W  L  T  H  S  T  R  M  K  K  K  R  R  S  S  R  R  S  K  L  S  L  L  L  P  M  D  S  H  P  R  L  H  L  D  Q  L  T  T  R  H  Q  G  R  N  *  D  G  N  T  R  Q  N  W  P  A  K  R  T  K  K  L  H  E  G  S  Q  E  E  V  L  G  V  Q  I  A  V  V  L  R  K  P  L  E  I  C  L  H  I  R  T  L  M  I  C  H  L  Q  E  N  *  *  F  R  L  T  S  G  V  R  L  F  F  Y  L  F  M  V  P  *  F  H  S  I  L  P  P  *  K  V  Y  L  V  N  K  I  L  T  V  P  A  I  S  E  *  C  S  M  F  L  A  L  H  S  L  L  M  T  Q  I  L  *  S  S  R  D  Q  Y  M  L  K  K  F  H  F  V  P  R  T  Q  G  T  S  L  K  W  F  N  K  *  E  P  S  A  G  R  L  S  L  E  N  Q  R  E  L  R  E  Q  L  *  *  H  K  R  N  F  K  L  L  E  P  N  L  N  Q  S  S  C  Q  I  C  G  F  V  Q  Y  L  V  V  A  G  E  S  F  L  V  L  *  R  L  T  Q  M  D  S  G  M  E  L  Q  G  Q  M  R  E  W  M  L  C  M  V  T  S  N  T  H  S  S  S  Q  Q  K  R  R  *  L  Q  S  S  T  F  T  C  T  I  T  *  W  W  G  T  R  K  P  R  T  C  S  S  M  L  K  *  W  T  L  C  R  Q  L  G  V  E  K  D  L  L  M  I  L  M  R  L  R  R  N  S  V  K  G  I  G  K  T  R  L  T  W  N  F  K  H  L  *  I  R  *  M  T  S  G  P  S  L  S  L  K  G  L  I  W  S  L  I  S  R  *  E  N  L  D  S  T  G  Y  P  T  S  Q  Q  L  L  *  S  Q  H  L  A  A  L  L  S  S  *  R  H  H  L  L  *  S  L  S  V  R  L  R  *  S  T  W  R  G  L  V  S  G  R  R  I  L  T  *  Q  L  Y  S  R  T  S  K  E  M  L  C  E  L  I  L  S  L  Q  L  L  L  M  A  S  R  S  G  S  I  Q  L  T  L  S  T  M  R  A  G  *  I  *  T  G  V  R  Y  *  K  Q  L  L  M  I  R  K  S  S  *  R  M  V  D  G  N  F  *  I  *  K  V  L  I  R  N  L  R  T  H  R  S  L  I  K  D  M  N  L  Q  M  *  S  P  S  H  Q  T  R  K  M  M  K  A  H  H  *  L  S  Q  M  M  M  K  G  R  T  L  R  N  I  Q  K  K  K  G  K  H  G  K  S  W  K  E  K  Q  A  M  P  T  E  R  K  G  L  N  Q  T  V  T  M  I  G  R  G  G  I  *  S  L  L  G  K  V  V  L  Q  R  E  E  I  S  L  A  T  F  P  R  D  P  G  L  G  K  E  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67113" stop="69911"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2796</number_coding_nucleotides>
                  <number_encoded_amino_acids>932</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMDAIFRAMQDQSESNVPVVGHIAREAPEGNLLETWTEKLKNTQFQLSDVTNGFSDLFAVKDTAEIMNVKKAGYLTSSVMKHFVVPKLERVIDEEKKVSHSSLMDDTEKVILEPAKIKVKLKAENVDICYPPIFQSGGEFDLRPSASSNDQNLYYDSTSVIICAIGSRYNSYCSNVARTFLIDANPMQSKAYEVLLKAHEAAIGALRPGNKAGDVYQAALNVVEKEAPELVANLTRSAGTGIGLEFRESGLNLNGKNDRMLKSGMVFNVSLGFQNLQTESKNPKTEKICVLVADTVVIGQNAPEVVTSMSSKAVKDVAYSFNEDEEEEEEQPKVKAKPVAANGLSSKATLRSVNHETSREELRRQHQAELARQKNEETARRLTGGSSGGADSRGSAKATGDLLAYKNINDLPPPRELMIQVDQRSEAILLPIHGTMIPFHIATVKSVSSQQDTNRTCYIRIMFNVPGTPFTPHDTNTLKFQGSIYVKEVSFRSKDPRHITEVVQQIRTLRRQVVSRESERAERATLVTQEKLQVAGAKFKPIKLSDLWIRPVFGGRGRKLPGTLEAHTNGFRYGTSRPDERVDVMYGNIKHAFFQPAEKEMITVLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKINMEFQTFVNKVNDLWTQPQFKGLDLEFDQPLRELGFHGVPHKSTAFIVPTSSCLVELVETPFVVITLCEIEIVNLERVGLGQKNFDMTIIFKDFKRDVMRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPEEFIENGGWEFLNLEGTDSESENSQESDQGYEPSDVEPVSSDEEDDESASLVESDDDEGEDSEEYSEEEGKTWEELEREASNADREKGAESDSDNDRKRRNMKPFGKGRPPERRNLSSNISKRPRFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="78755" PGL_stop="83449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78755" e_stop="79149"/>
            <exon e_start="79778" e_stop="79954"/>
            <exon e_start="80035" e_stop="80196"/>
            <exon e_start="80357" e_stop="80437"/>
            <exon e_start="80810" e_stop="80861"/>
            <exon e_start="81151" e_stop="81265"/>
            <exon e_start="81412" e_stop="81493"/>
            <exon e_start="82006" e_stop="82101"/>
            <exon e_start="82238" e_stop="82339"/>
            <exon e_start="82434" e_stop="82550"/>
            <exon e_start="82641" e_stop="82757"/>
            <exon e_start="83222" e_stop="83449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78755" e_stop="79149" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79778" e_stop="79954" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80035" e_stop="80196" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80357" e_stop="80437" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80810" e_stop="80861" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81151" e_stop="81265" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.627" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81412" e_stop="81493" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.957">
            <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82006" e_stop="82101" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82238" e_stop="82339" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="82434" e_stop="82550" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="82641" e_stop="82757" e_length="117"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="83222" e_stop="83449" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78755" stop="79149"/>
              <exon start="79778" stop="79939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78789" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78793" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82550"/>
              <exon start="82641" stop="82757"/>
              <exon start="83222" stop="83449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78837" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78842" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78849" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78856" stop="79149"/>
              <exon start="79778" stop="79909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78857" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78857" stop="79149"/>
              <exon start="79778" stop="79863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78865" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78905" stop="79149"/>
              <exon start="79778" stop="79911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78917" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78964" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78985" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78994" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78994" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79037" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79056" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79120" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80091" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80129" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80172" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80181" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80369" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80379" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82550"/>
              <exon start="82641" stop="82755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80381" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82550"/>
              <exon start="82641" stop="82757"/>
              <exon start="83222" stop="83442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80384" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82247" stop="82339"/>
              <exon start="82434" stop="82550"/>
              <exon start="82641" stop="82757"/>
              <exon start="83222" stop="83437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82546" stop="82550"/>
              <exon start="82641" stop="82757"/>
              <exon start="83222" stop="83437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA : GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG : GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG : GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG : GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG : ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA : GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA : ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA : GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT : TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAG : GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAG : GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAACTAACTGTACGA</gDNA_template>
            <first_frame> D  Y  E  N  Q  A  A  S  L  F  F  P  I  Q  Y  L  P  L  L  K  T  P  N  Y  L  L  P  C  P  H  P  H  L  S  S  F  I  S  L  T  S  C  C  L  V  G  E  Y  P  Q  F  F  Y  L  K  I  I  P  *  I  S  *  F  *  I  F  V  F  C  N  Q  L  H  T  H  Q  L  F  V  *  L  F  K  R  E  R  V  V  V  R  L  D  C  K  K  N  R  V  I  W  R  G  R  R  S  E  S  M  I  Q  R  G  F  *  G  S  I  *  N  A  L  L  A  L  I  F  R  S  A  L  L  K :   *  Q  N  L  Q  I  L  L  S  *  Q  T  K  N  H  G  F  H  R  Q  S  W  L  *  N  Q  T  C  C  L  E  S  V  E  R  V  A  W  *  L  *  I  W  I  *  Q  E  L  L  S  L  *  K  H  D  L  V  W  R :   L  K  W  V  A  A  R  H  L  *  Q  H  L  L  L  N  H  L  F  P  M  T  K  N  I  T  F  P  *  S  L  K  G  W  A  A  Q  L  A  F  Q  N  V  E  A  L  R  L  K  R  T  G  T  R :   S  R  Q  Y  S  F  Q  R  R  N  L  *  P  *  R  R  V  L  H  *  L  L  L  C  P  W  R :   Y  G  E  R  L  A  I  S  L  W  V  F  L  M  C  F  K  :  I  S  I  L  V  S  *  R  *  T  H  L  R  L  *  M  E  S  L  T  H  W  I  *  E  E  S  W  M  T  Q  Q  P  S  K  I  L  R   : S  G  E  A  S  S  F  L  C  L  L  E  E  F  *  A  L  P  K  A  S  F  T  L  W  M  R  K :   L  V  P  L  *  N  L  Q  F  *  T  Q  K  V  V  S  G  Q  W  W  L  E  V  V  Q  A  L  Y  M  L  I  Q :   *  G  I  *  V  M  P  L  S  L  V  T  M  P  S  I  V  E  L  Q  M  K  R  R  F  C  N  M  L  E  *  F  *  I :   V  L  L  Q  I  L  M  G  V  R  E  L  *  L  L  E  V  V  L  P  T  S  L  M  *  L  L  L  S  M  G  L  F  G  L  S  G  R  R :   K  P  S  *  K  R  L  E  C  I  S  M  Y  E  E  V  V  Q  I  I  R  L  V  *  Q  K  C  A  P  *  E  R  N  L  E  F  P  L  R :   F  M  D  Q  R  L  Q  *  R  E  F  V  K  G  Q  L  I  A  L  C  L  K  H  K  C  Q  M  R  K  K  T  C  V  T  F  L  Q  L  R  R  N  F  V  G  Y  L  I  C  L  L  I  L  F  C  Y  K  W  D  L  *  R  I  I  *  D  P  F  V  L  P  G  N  *  L  Y   </first_frame>
            <second_frame>  I  M  K  I  R  Q  H  H  Y  S  S  Q  Y  S  I  F  P  C  *  K  R  P  T  T  Y  S  P  V  P  T  P  T  S  A  H  S  S  H  S  P  V  V  A  W  L  V  N  T  H  N  S  S  T  L  R  *  F  H  K  F  H  S  S  R  S  S  F  F  V  I  N  C  I  P  T  N  C  L  Y  N  C  L  R  E  R  E  L  S  F  V  W  I  V  R  K  T  E  *  Y  G  E  E  E  D  Q  R  V  *  F  K  E  A  S  K  G  A  F  E  T  P  C  W  H  *  S  S  D  L  L  C  S   : S  D  R  I  Y  R  F  Y  *  V  N  K  Q  R  T  M  A  F  I  D  K  A  G  C  K  T  R  H  A  V  W  K  A  W  K  E  W  L  G  S  F  E  S  G  S  S  R  S  C  *  V  C  K  N  T  T  W  C  G   : G  *  N  G  W  L  Q  G  T  Y  N  N  I  Y  C  *  T  I  C  S  P  *  P  R  I  L  P  F  H  S  L  *  K  V  G  L  H  N  *  L  F  R  M  W  R  H  *  D  *  R  E  L  G  Q   : G  Q  D  N  I  P  S  N  G  E  T  Y  D  P  R  G  V  C  S  T  D  C  Y  S  A  L  G   : G  T  G  K  D  W  Q  F  P  Y  G  C  F  *  C  V  S  R :   S  R  F  *  F  H  R  D  E  P  I  Y  A  C  K  W  R  A  L  P  I  G  Y  E  R  R  V  G  *  H  S  S  L  Q  K  F  *  E  :  V  G  K  H  R  V  S  S  A  F  W  K  S  F  E  P  Y  R  K  L  H  S  L  F  G  *  E   : N  *  C  L  F  K  I  Y  S  F  E  P  K  R  S  Y  L  D  N  G  G  W  R  W  C  K  R  Y  I  C  *  Y   : S  R  G  F  R  L  C  L  *  A  W  *  L  C  R  V  *  W  S  S  K  *  R  G  G  S  A  I  C  S  S  S  S  R   : L  C  Y  C  K  S  *  W  A  *  E  S  S  D  C  W  R  W  Y  C  Q  L  H  *  C  S  C  Y  F  Q  W  D  Y  S  G  S  Q  G  E   : G  S  Q  A  K  S  G  *  N  A  Y  L  C  T  K  R  W  S  K  L  S  D  W  S  S  K  N  A  R  P  R  R  G  T  W  S  S  P  *   : G  L  W  T  R  G  Y  N  D  G  N  L  *  R  G  N  *  L  H  Y  V  *  S  I  S  A  K  *  E  R  R  L  V  L  H  S  C  N  *  E  E  T  L  L  D  I  *  F  A  F  *  Y  C  F  V  T  N  G  T  F  K  E  *  F  E  I  L  L  F  Y  L  E  T  N  C  T  </second_frame>
            <third_frame>   L  *  K  S  G  S  I  I  I  L  P  N  T  V  S  S  L  V  K  N  A  Q  L  P  T  P  L  S  P  P  P  P  Q  L  I  H  L  T  H  Q  L  L  P  G  W  *  I  P  T  I  L  L  P  *  D  N  S  I  N  F  I  V  L  D  L  R  F  L  *  S  I  A  Y  P  P  T  V  C  I  I  V  *  E  R  E  S  C  R  S  F  G  L  *  E  K  Q  S  N  M  A  R  K  K  I  R  E  Y  D  S  K  R  L  L  R  E  H  L  K  R  L  A  G  I  D  L  Q  I  C  S  A  Q  :  V  T  E  S  T  D  F  T  E  L  T  N  K  E  P  W  L  S  S  T  K  L  V  V  K  P  D  M  L  F  G  K  R  G  K  S  G  L  V  A  L  N  L  D  L  A  G  V  A  E  F  V  K  T  R  L  G  V  E  :  V  E  M  G  G  C  K  A  P  I  T  T  F  I  V  E  P  F  V  P  H  D  Q  E  Y  Y  L  S  I  V  S  E  R  L  G  C  T  I  S  F  S  E  C  G  G  I  E  I  E  E  N  W  D  K  :  V  K  T  I  F  L  P  T  E  K  P  M  T  L  E  A  C  A  P  L  I  A  T  L  P  L  E  :  V  R  G  K  I  G  N  F  L  M  G  V  F  D  V  F  Q   : D  L  D  F  S  F  I  E  M  N  P  F  T  L  V  N  G  E  P  Y  P  L  D  M  R  G  E  L  D  D  T  A  A  F  K  N  F  K  K :   W  G  S  I  E  F  P  L  P  F  G  R  V  L  S  P  T  E  S  F  I  H  S  L  D  E  K  :  T  S  A  S  L  K  F  T  V  L  N  P  K  G  R  I  W  T  M  V  A  G  G  G  A  S  V  I  Y  A  D  T  :  V  G  D  L  G  Y  A  S  E  L  G  N  Y  A  E  Y  S  G  A  P  N  E  E  E  V  L  Q  Y  A  R  V  V  L  D  :  C  A  T  A  N  P  D  G  R  K  R  A  L  I  V  G  G  G  I  A  N  F  T  D  V  A  A  T  F  N  G  I  I  R  A  L  R  E  K  :  E  A  K  L  K  A  A  R  M  H  I  Y  V  R  R  G  G  P  N  Y  Q  T  G  L  A  K  M  R  A  L  G  E  E  L  G  V  P  L  E  :  V  Y  G  P  E  A  T  M  T  G  I  C  K  G  A  I  D  C  I  M  S  E  A  *  V  P  N  E  K  E  D  L  C  Y  I  L  A  I  K  K  K  L  C  W  I  F  N  L  P  S  D  I  V  L  L  Q  M  G  P  L  K  N  N  L  R  S  F  C  F  T  W  K  L  T  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79036" stop="79149"/>
                    <exon start="79778" stop="79954"/>
                    <exon start="80035" stop="80196"/>
                    <exon start="80357" stop="80437"/>
                    <exon start="80810" stop="80861"/>
                    <exon start="81151" stop="81265"/>
                    <exon start="81412" stop="81493"/>
                    <exon start="82006" stop="82101"/>
                    <exon start="82238" stop="82339"/>
                    <exon start="82434" stop="82550"/>
                    <exon start="82641" stop="82757"/>
                    <exon start="83222" stop="83293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQSNMARKKIREYDSKRLLREHLKRLAGIDLQICSAQVTESTDFTELTNKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAGVAEFVKTRLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLSIVSERLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLEACAPLIATLPLEVRGKIGNFLMGVFDVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGSIEFPLPFGRVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATANPDGRKRALIVGGGIANFTDVAATFNGIIRALREKEAKLKAARMHIYVRRGGPNYQTGLAKMRALGEELGVPLEVYGPEATMTGICKGAIDCIMSEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78755" e_stop="79149"/>
            <exon e_start="79778" e_stop="79954"/>
            <exon e_start="80035" e_stop="80196"/>
            <exon e_start="80357" e_stop="80437"/>
            <exon e_start="80810" e_stop="80861"/>
            <exon e_start="81151" e_stop="81265"/>
            <exon e_start="81412" e_stop="81493"/>
            <exon e_start="82006" e_stop="82101"/>
            <exon e_start="82238" e_stop="82339"/>
            <exon e_start="82434" e_stop="83277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78755" e_stop="79149" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79778" e_stop="79954" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80035" e_stop="80196" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80357" e_stop="80437" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80810" e_stop="80861" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81151" e_stop="81265" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.627" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81412" e_stop="81493" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.957">
            <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82006" e_stop="82101" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82238" e_stop="82339" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94"/>
          </intron>
          <exon e_serial="10" e_score="0.965">
            <gDNA_exon_boundary e_start="82434" e_stop="83277" e_length="844"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78755" stop="79149"/>
              <exon start="79778" stop="79939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78789" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78837" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78842" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78849" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78856" stop="79149"/>
              <exon start="79778" stop="79909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78857" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78857" stop="79149"/>
              <exon start="79778" stop="79863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78865" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78905" stop="79149"/>
              <exon start="79778" stop="79911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78917" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78964" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78985" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78994" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78994" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79037" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79056" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79120" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80091" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80129" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80172" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80181" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80369" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80384" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82443" stop="83277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82444" stop="82929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA : GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG : GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG : GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG : GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG : ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA : GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA : ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA : GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT : TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCAACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCAT</gDNA_template>
            <first_frame> D  Y  E  N  Q  A  A  S  L  F  F  P  I  Q  Y  L  P  L  L  K  T  P  N  Y  L  L  P  C  P  H  P  H  L  S  S  F  I  S  L  T  S  C  C  L  V  G  E  Y  P  Q  F  F  Y  L  K  I  I  P  *  I  S  *  F  *  I  F  V  F  C  N  Q  L  H  T  H  Q  L  F  V  *  L  F  K  R  E  R  V  V  V  R  L  D  C  K  K  N  R  V  I  W  R  G  R  R  S  E  S  M  I  Q  R  G  F  *  G  S  I  *  N  A  L  L  A  L  I  F  R  S  A  L  L  K :   *  Q  N  L  Q  I  L  L  S  *  Q  T  K  N  H  G  F  H  R  Q  S  W  L  *  N  Q  T  C  C  L  E  S  V  E  R  V  A  W  *  L  *  I  W  I  *  Q  E  L  L  S  L  *  K  H  D  L  V  W  R :   L  K  W  V  A  A  R  H  L  *  Q  H  L  L  L  N  H  L  F  P  M  T  K  N  I  T  F  P  *  S  L  K  G  W  A  A  Q  L  A  F  Q  N  V  E  A  L  R  L  K  R  T  G  T  R :   S  R  Q  Y  S  F  Q  R  R  N  L  *  P  *  R  R  V  L  H  *  L  L  L  C  P  W  R :   Y  G  E  R  L  A  I  S  L  W  V  F  L  M  C  F  K  :  I  S  I  L  V  S  *  R  *  T  H  L  R  L  *  M  E  S  L  T  H  W  I  *  E  E  S  W  M  T  Q  Q  P  S  K  I  L  R   : S  G  E  A  S  S  F  L  C  L  L  E  E  F  *  A  L  P  K  A  S  F  T  L  W  M  R  K :   L  V  P  L  *  N  L  Q  F  *  T  Q  K  V  V  S  G  Q  W  W  L  E  V  V  Q  A  L  Y  M  L  I  Q :   *  G  I  *  V  M  P  L  S  L  V  T  M  P  S  I  V  E  L  Q  M  K  R  R  F  C  N  M  L  E  *  F  *  I :   V  L  L  Q  I  L  M  G  V  R  E  L  *  L  L  E  V  V  L  P  T  S  L  M  *  L  L  L  S  M  G  L  F  G  L  S  G  R  R  L  A  V  C  Y  F  L  H  K  V  F  Y  F  F  Y  R  *  E  A  V  N  N  V  F  P  L  N  P  N  R  K  P  S  *  K  R  L  E  C  I  S  M  Y  E  E  V  V  Q  I  I  R  L  V  *  Q  K  C  A  P  *  E  R  N  L  E  F  P  L  R  Y  E  I  S  L  G  E  I  L  I  P  K  *  Y  S  D  Y  S  P  *  I  S  I  I  V  R  N  P  L  T  F  L  E  V  T  *  I  L  T  T  H  A  T  D  E  G  M  L  *  I  R  I  C  F  Y  L  I  L  G  I  L  F  F  *  L  H  L  P  N  *  I  N  *  P  D  H  G  D  V  T  R  N  Y  I  H  K  *  L  G  P  S  S  *  M  S  E  D  R  L  R  S  D  I  K  T  T  T  G  S  S  *  N  I  G  T  W  T  S  K  D  A  V  T  S  I  V  I  N  T  P  Y  F  L  S  F  H  I  Q  R  K  *  E  I  R  Y  K  I  C  V  D  S  A  I  A  G  L  W  T  R  G  Y  N  D  G  N  L  *  R  G  N  *  L  H </first_frame>
            <second_frame>  I  M  K  I  R  Q  H  H  Y  S  S  Q  Y  S  I  F  P  C  *  K  R  P  T  T  Y  S  P  V  P  T  P  T  S  A  H  S  S  H  S  P  V  V  A  W  L  V  N  T  H  N  S  S  T  L  R  *  F  H  K  F  H  S  S  R  S  S  F  F  V  I  N  C  I  P  T  N  C  L  Y  N  C  L  R  E  R  E  L  S  F  V  W  I  V  R  K  T  E  *  Y  G  E  E  E  D  Q  R  V  *  F  K  E  A  S  K  G  A  F  E  T  P  C  W  H  *  S  S  D  L  L  C  S   : S  D  R  I  Y  R  F  Y  *  V  N  K  Q  R  T  M  A  F  I  D  K  A  G  C  K  T  R  H  A  V  W  K  A  W  K  E  W  L  G  S  F  E  S  G  S  S  R  S  C  *  V  C  K  N  T  T  W  C  G   : G  *  N  G  W  L  Q  G  T  Y  N  N  I  Y  C  *  T  I  C  S  P  *  P  R  I  L  P  F  H  S  L  *  K  V  G  L  H  N  *  L  F  R  M  W  R  H  *  D  *  R  E  L  G  Q   : G  Q  D  N  I  P  S  N  G  E  T  Y  D  P  R  G  V  C  S  T  D  C  Y  S  A  L  G   : G  T  G  K  D  W  Q  F  P  Y  G  C  F  *  C  V  S  R :   S  R  F  *  F  H  R  D  E  P  I  Y  A  C  K  W  R  A  L  P  I  G  Y  E  R  R  V  G  *  H  S  S  L  Q  K  F  *  E  :  V  G  K  H  R  V  S  S  A  F  W  K  S  F  E  P  Y  R  K  L  H  S  L  F  G  *  E   : N  *  C  L  F  K  I  Y  S  F  E  P  K  R  S  Y  L  D  N  G  G  W  R  W  C  K  R  Y  I  C  *  Y   : S  R  G  F  R  L  C  L  *  A  W  *  L  C  R  V  *  W  S  S  K  *  R  G  G  S  A  I  C  S  S  S  S  R   : L  C  Y  C  K  S  *  W  A  *  E  S  S  D  C  W  R  W  Y  C  Q  L  H  *  C  S  C  Y  F  Q  W  D  Y  S  G  S  Q  G  E  G  W  L  C  A  I  F  Y  T  K  F  F  T  F  S  I  D  K  R  Q  *  I  M  F  F  L  *  I  R  T  G  S  Q  A  K  S  G  *  N  A  Y  L  C  T  K  R  W  S  K  L  S  D  W  S  S  K  N  A  R  P  R  R  G  T  W  S  S  P  *  G  M  K  Y  H  L  A  K  F  L  F  L  S  D  T  V  T  T  V  P  E  F  Q  L  *  Y  V  I  L  *  H  F  W  R  *  H  R  Y  *  P  H  M  P  Q  M  K  G  C  C  R  S  E  F  A  F  T  *  S  *  A  F  C  F  F  S  Y  I  F  P  T  K  S  I  S  P  T  M  V  M  L  L  V  I  T  F  I  S  S  L  V  H  L  H  R  C  L  R  I  V  *  G  Q  T  S  R  L  Q  Q  V  P  V  R  I  *  E  H  G  L  P  K  M  L  L  P  V  L  L  L  I  H  P  T  S  *  V  F  I  F  N  E  S  K  R  *  G  I  K  F  V  S  I  L  L  L  Q  V  Y  G  P  E  A  T  M  T  G  I  C  K  G  A  I  D  C   </second_frame>
            <third_frame>   L  *  K  S  G  S  I  I  I  L  P  N  T  V  S  S  L  V  K  N  A  Q  L  P  T  P  L  S  P  P  P  P  Q  L  I  H  L  T  H  Q  L  L  P  G  W  *  I  P  T  I  L  L  P  *  D  N  S  I  N  F  I  V  L  D  L  R  F  L  *  S  I  A  Y  P  P  T  V  C  I  I  V  *  E  R  E  S  C  R  S  F  G  L  *  E  K  Q  S  N  M  A  R  K  K  I  R  E  Y  D  S  K  R  L  L  R  E  H  L  K  R  L  A  G  I  D  L  Q  I  C  S  A  Q  :  V  T  E  S  T  D  F  T  E  L  T  N  K  E  P  W  L  S  S  T  K  L  V  V  K  P  D  M  L  F  G  K  R  G  K  S  G  L  V  A  L  N  L  D  L  A  G  V  A  E  F  V  K  T  R  L  G  V  E  :  V  E  M  G  G  C  K  A  P  I  T  T  F  I  V  E  P  F  V  P  H  D  Q  E  Y  Y  L  S  I  V  S  E  R  L  G  C  T  I  S  F  S  E  C  G  G  I  E  I  E  E  N  W  D  K  :  V  K  T  I  F  L  P  T  E  K  P  M  T  L  E  A  C  A  P  L  I  A  T  L  P  L  E  :  V  R  G  K  I  G  N  F  L  M  G  V  F  D  V  F  Q   : D  L  D  F  S  F  I  E  M  N  P  F  T  L  V  N  G  E  P  Y  P  L  D  M  R  G  E  L  D  D  T  A  A  F  K  N  F  K  K :   W  G  S  I  E  F  P  L  P  F  G  R  V  L  S  P  T  E  S  F  I  H  S  L  D  E  K  :  T  S  A  S  L  K  F  T  V  L  N  P  K  G  R  I  W  T  M  V  A  G  G  G  A  S  V  I  Y  A  D  T  :  V  G  D  L  G  Y  A  S  E  L  G  N  Y  A  E  Y  S  G  A  P  N  E  E  E  V  L  Q  Y  A  R  V  V  L  D  :  C  A  T  A  N  P  D  G  R  K  R  A  L  I  V  G  G  G  I  A  N  F  T  D  V  A  A  T  F  N  G  I  I  R  A  L  R  E  K  V  G  C  V  L  F  F  T  Q  S  F  L  L  F  L  *  I  R  G  S  K  *  C  F  S  F  E  S  E  Q  E  A  K  L  K  A  A  R  M  H  I  Y  V  R  R  G  G  P  N  Y  Q  T  G  L  A  K  M  R  A  L  G  E  E  L  G  V  P  L  E  V  *  N  I  T  W  R  N  S  Y  S  *  V  I  Q  *  L  Q  S  L  N  F  N  Y  S  T  *  S  F  D  I  F  G  G  N  I  D  T  N  H  T  C  H  R  *  R  D  V  V  D  Q  N  L  L  L  L  D  P  R  H  S  V  F  L  V  T  S  S  Q  L  N  Q  L  A  R  P  W  *  C  Y  S  *  L  H  S  *  V  A  W  S  I  F  I  D  V  *  G  S  F  E  V  R  H  Q  D  Y  N  R  F  Q  L  E  Y  R  N  M  D  F  Q  R  C  C  Y  Q  Y  C  Y  *  Y  T  L  L  P  K  F  S  Y  S  T  K  V  R  D  K  V  *  N  L  C  R  F  C  Y  C  R  F  M  D  Q  R  L  Q  *  R  E  F  V  K  G  Q  L  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79036" stop="79149"/>
                    <exon start="79778" stop="79954"/>
                    <exon start="80035" stop="80196"/>
                    <exon start="80357" stop="80437"/>
                    <exon start="80810" stop="80861"/>
                    <exon start="81151" stop="81265"/>
                    <exon start="81412" stop="81493"/>
                    <exon start="82006" stop="82101"/>
                    <exon start="82238" stop="82339"/>
                    <exon start="82434" stop="82598"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQSNMARKKIREYDSKRLLREHLKRLAGIDLQICSAQVTESTDFTELTNKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAGVAEFVKTRLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLSIVSERLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLEACAPLIATLPLEVRGKIGNFLMGVFDVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGSIEFPLPFGRVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATANPDGRKRALIVGGGIANFTDVAATFNGIIRALREKVGCVLFFTQSFLLFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78755" e_stop="79149"/>
            <exon e_start="79778" e_stop="79954"/>
            <exon e_start="80035" e_stop="80196"/>
            <exon e_start="80357" e_stop="80523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78755" e_stop="79149" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79778" e_stop="79954" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80035" e_stop="80196" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80357" e_stop="80523" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78755" stop="79149"/>
              <exon start="79778" stop="79939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78789" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78856" stop="79149"/>
              <exon start="79778" stop="79909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78857" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78857" stop="79149"/>
              <exon start="79778" stop="79863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78865" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78905" stop="79149"/>
              <exon start="79778" stop="79911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78964" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78985" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79047" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA : GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG : GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG : GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCA</gDNA_template>
            <first_frame> D  Y  E  N  Q  A  A  S  L  F  F  P  I  Q  Y  L  P  L  L  K  T  P  N  Y  L  L  P  C  P  H  P  H  L  S  S  F  I  S  L  T  S  C  C  L  V  G  E  Y  P  Q  F  F  Y  L  K  I  I  P  *  I  S  *  F  *  I  F  V  F  C  N  Q  L  H  T  H  Q  L  F  V  *  L  F  K  R  E  R  V  V  V  R  L  D  C  K  K  N  R  V  I  W  R  G  R  R  S  E  S  M  I  Q  R  G  F  *  G  S  I  *  N  A  L  L  A  L  I  F  R  S  A  L  L  K :   *  Q  N  L  Q  I  L  L  S  *  Q  T  K  N  H  G  F  H  R  Q  S  W  L  *  N  Q  T  C  C  L  E  S  V  E  R  V  A  W  *  L  *  I  W  I  *  Q  E  L  L  S  L  *  K  H  D  L  V  W  R :   L  K  W  V  A  A  R  H  L  *  Q  H  L  L  L  N  H  L  F  P  M  T  K  N  I  T  F  P  *  S  L  K  G  W  A  A  Q  L  A  F  Q  N  V  E  A  L  R  L  K  R  T  G  T  R :   S  R  Q  Y  S  F  Q  R  R  N  L  *  P  *  R  R  V  L  H  *  L  L  L  C  P  W  R  *  S  E  I  F  V  F  V  L  C  F  Y  F  P  F  S  H  Q  S  R  S  S  Q  H  D  L  S  V  </first_frame>
            <second_frame>  I  M  K  I  R  Q  H  H  Y  S  S  Q  Y  S  I  F  P  C  *  K  R  P  T  T  Y  S  P  V  P  T  P  T  S  A  H  S  S  H  S  P  V  V  A  W  L  V  N  T  H  N  S  S  T  L  R  *  F  H  K  F  H  S  S  R  S  S  F  F  V  I  N  C  I  P  T  N  C  L  Y  N  C  L  R  E  R  E  L  S  F  V  W  I  V  R  K  T  E  *  Y  G  E  E  E  D  Q  R  V  *  F  K  E  A  S  K  G  A  F  E  T  P  C  W  H  *  S  S  D  L  L  C  S   : S  D  R  I  Y  R  F  Y  *  V  N  K  Q  R  T  M  A  F  I  D  K  A  G  C  K  T  R  H  A  V  W  K  A  W  K  E  W  L  G  S  F  E  S  G  S  S  R  S  C  *  V  C  K  N  T  T  W  C  G   : G  *  N  G  W  L  Q  G  T  Y  N  N  I  Y  C  *  T  I  C  S  P  *  P  R  I  L  P  F  H  S  L  *  K  V  G  L  H  N  *  L  F  R  M  W  R  H  *  D  *  R  E  L  G  Q   : G  Q  D  N  I  P  S  N  G  E  T  Y  D  P  R  G  V  C  S  T  D  C  Y  S  A  L  G  G  D  L  K  F  L  F  L  F  Y  A  S  T  F  L  L  V  I  S  L  D  Q  A  S  M  I  C  Q  S </second_frame>
            <third_frame>   L  *  K  S  G  S  I  I  I  L  P  N  T  V  S  S  L  V  K  N  A  Q  L  P  T  P  L  S  P  P  P  P  Q  L  I  H  L  T  H  Q  L  L  P  G  W  *  I  P  T  I  L  L  P  *  D  N  S  I  N  F  I  V  L  D  L  R  F  L  *  S  I  A  Y  P  P  T  V  C  I  I  V  *  E  R  E  S  C  R  S  F  G  L  *  E  K  Q  S  N  M  A  R  K  K  I  R  E  Y  D  S  K  R  L  L  R  E  H  L  K  R  L  A  G  I  D  L  Q  I  C  S  A  Q  :  V  T  E  S  T  D  F  T  E  L  T  N  K  E  P  W  L  S  S  T  K  L  V  V  K  P  D  M  L  F  G  K  R  G  K  S  G  L  V  A  L  N  L  D  L  A  G  V  A  E  F  V  K  T  R  L  G  V  E  :  V  E  M  G  G  C  K  A  P  I  T  T  F  I  V  E  P  F  V  P  H  D  Q  E  Y  Y  L  S  I  V  S  E  R  L  G  C  T  I  S  F  S  E  C  G  G  I  E  I  E  E  N  W  D  K  :  V  K  T  I  F  L  P  T  E  K  P  M  T  L  E  A  C  A  P  L  I  A  T  L  P  L  E  V  I  *  N  F  C  F  C  F  M  L  L  L  S  F  *  S  S  V  S  I  K  P  A  *  S  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79036" stop="79149"/>
                    <exon start="79778" stop="79954"/>
                    <exon start="80035" stop="80196"/>
                    <exon start="80357" stop="80446"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQSNMARKKIREYDSKRLLREHLKRLAGIDLQICSAQVTESTDFTELTNKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAGVAEFVKTRLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLSIVSERLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLEACAPLIATLPLEVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="78857" e_stop="79149"/>
            <exon e_start="79778" e_stop="79886"/>
            <exon e_start="80826" e_stop="80861"/>
            <exon e_start="81151" e_stop="81265"/>
            <exon e_start="81412" e_stop="81493"/>
            <exon e_start="82006" e_stop="82101"/>
            <exon e_start="82238" e_stop="82339"/>
            <exon e_start="82434" e_stop="82550"/>
            <exon e_start="82641" e_stop="82757"/>
            <exon e_start="83222" e_stop="83437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78857" e_stop="79149" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79778" e_stop="79886" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79887" i_stop="80825" i_length="939"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80826" e_stop="80861" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81151" e_stop="81265" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.627" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81412" e_stop="81493" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.957">
            <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82006" e_stop="82101" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82238" e_stop="82339" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82434" e_stop="82550" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82641" e_stop="82757" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83222" e_stop="83437" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78857" stop="79149"/>
              <exon start="79778" stop="79863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78994" stop="79149"/>
              <exon start="79778" stop="79886"/>
              <exon start="80826" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82247" stop="82339"/>
              <exon start="82434" stop="82550"/>
              <exon start="82641" stop="82757"/>
              <exon start="83222" stop="83437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82546" stop="82550"/>
              <exon start="82641" stop="82757"/>
              <exon start="83222" stop="83437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA : GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTG : GCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG : ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA : GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA : ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA : GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT : TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAG : GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAG : GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAA</gDNA_template>
            <first_frame> S  F  I  S  L  T  S  C  C  L  V  G  E  Y  P  Q  F  F  Y  L  K  I  I  P  *  I  S  *  F  *  I  F  V  F  C  N  Q  L  H  T  H  Q  L  F  V  *  L  F  K  R  E  R  V  V  V  R  L  D  C  K  K  N  R  V  I  W  R  G  R  R  S  E  S  M  I  Q  R  G  F  *  G  S  I  *  N  A  L  L  A  L  I  F  R  S  A  L  L  K :   *  Q  N  L  Q  I  L  L  S  *  Q  T  K  N  H  G  F  H  R  Q  S  W  L  *  N  Q  T  C  C  L  E  S  V  E  R  V  :  A  I  S  L  W  V  F  L  M  C  F  K  :  I  S  I  L  V  S  *  R  *  T  H  L  R  L  *  M  E  S  L  T  H  W  I  *  E  E  S  W  M  T  Q  Q  P  S  K  I  L  R   : S  G  E  A  S  S  F  L  C  L  L  E  E  F  *  A  L  P  K  A  S  F  T  L  W  M  R  K :   L  V  P  L  *  N  L  Q  F  *  T  Q  K  V  V  S  G  Q  W  W  L  E  V  V  Q  A  L  Y  M  L  I  Q :   *  G  I  *  V  M  P  L  S  L  V  T  M  P  S  I  V  E  L  Q  M  K  R  R  F  C  N  M  L  E  *  F  *  I :   V  L  L  Q  I  L  M  G  V  R  E  L  *  L  L  E  V  V  L  P  T  S  L  M  *  L  L  L  S  M  G  L  F  G  L  S  G  R  R :   K  P  S  *  K  R  L  E  C  I  S  M  Y  E  E  V  V  Q  I  I  R  L  V  *  Q  K  C  A  P  *  E  R  N  L  E  F  P  L  R :   F  M  D  Q  R  L  Q  *  R  E  F  V  K  G  Q  L  I  A  L  C  L  K  H  K  C  Q  M  R  K  K  T  C  V  T  F  L  Q  L  R  R  N  F  V  G  Y  L  I  C  L  L  I  L  F  C  Y  K  W  D  L  *  R  I  I  *  D  P  F  V  L  P  G   </first_frame>
            <second_frame>  H  S  S  H  S  P  V  V  A  W  L  V  N  T  H  N  S  S  T  L  R  *  F  H  K  F  H  S  S  R  S  S  F  F  V  I  N  C  I  P  T  N  C  L  Y  N  C  L  R  E  R  E  L  S  F  V  W  I  V  R  K  T  E  *  Y  G  E  E  E  D  Q  R  V  *  F  K  E  A  S  K  G  A  F  E  T  P  C  W  H  *  S  S  D  L  L  C  S   : S  D  R  I  Y  R  F  Y  *  V  N  K  Q  R  T  M  A  F  I  D  K  A  G  C  K  T  R  H  A  V  W  K  A  W  K  E  W :   Q  F  P  Y  G  C  F  *  C  V  S  R :   S  R  F  *  F  H  R  D  E  P  I  Y  A  C  K  W  R  A  L  P  I  G  Y  E  R  R  V  G  *  H  S  S  L  Q  K  F  *  E  :  V  G  K  H  R  V  S  S  A  F  W  K  S  F  E  P  Y  R  K  L  H  S  L  F  G  *  E   : N  *  C  L  F  K  I  Y  S  F  E  P  K  R  S  Y  L  D  N  G  G  W  R  W  C  K  R  Y  I  C  *  Y   : S  R  G  F  R  L  C  L  *  A  W  *  L  C  R  V  *  W  S  S  K  *  R  G  G  S  A  I  C  S  S  S  S  R   : L  C  Y  C  K  S  *  W  A  *  E  S  S  D  C  W  R  W  Y  C  Q  L  H  *  C  S  C  Y  F  Q  W  D  Y  S  G  S  Q  G  E   : G  S  Q  A  K  S  G  *  N  A  Y  L  C  T  K  R  W  S  K  L  S  D  W  S  S  K  N  A  R  P  R  R  G  T  W  S  S  P  *   : G  L  W  T  R  G  Y  N  D  G  N  L  *  R  G  N  *  L  H  Y  V  *  S  I  S  A  K  *  E  R  R  L  V  L  H  S  C  N  *  E  E  T  L  L  D  I  *  F  A  F  *  Y  C  F  V  T  N  G  T  F  K  E  *  F  E  I  L  L  F  Y  L  E  </second_frame>
            <third_frame>   I  H  L  T  H  Q  L  L  P  G  W  *  I  P  T  I  L  L  P  *  D  N  S  I  N  F  I  V  L  D  L  R  F  L  *  S  I  A  Y  P  P  T  V  C  I  I  V  *  E  R  E  S  C  R  S  F  G  L  *  E  K  Q  S  N  M  A  R  K  K  I  R  E  Y  D  S  K  R  L  L  R  E  H  L  K  R  L  A  G  I  D  L  Q  I  C  S  A  Q  :  V  T  E  S  T  D  F  T  E  L  T  N  K  E  P  W  L  S  S  T  K  L  V  V  K  P  D  M  L  F  G  K  R  G  K  S   : G  N  F  L  M  G  V  F  D  V  F  Q   : D  L  D  F  S  F  I  E  M  N  P  F  T  L  V  N  G  E  P  Y  P  L  D  M  R  G  E  L  D  D  T  A  A  F  K  N  F  K  K :   W  G  S  I  E  F  P  L  P  F  G  R  V  L  S  P  T  E  S  F  I  H  S  L  D  E  K  :  T  S  A  S  L  K  F  T  V  L  N  P  K  G  R  I  W  T  M  V  A  G  G  G  A  S  V  I  Y  A  D  T  :  V  G  D  L  G  Y  A  S  E  L  G  N  Y  A  E  Y  S  G  A  P  N  E  E  E  V  L  Q  Y  A  R  V  V  L  D  :  C  A  T  A  N  P  D  G  R  K  R  A  L  I  V  G  G  G  I  A  N  F  T  D  V  A  A  T  F  N  G  I  I  R  A  L  R  E  K  :  E  A  K  L  K  A  A  R  M  H  I  Y  V  R  R  G  G  P  N  Y  Q  T  G  L  A  K  M  R  A  L  G  E  E  L  G  V  P  L  E  :  V  Y  G  P  E  A  T  M  T  G  I  C  K  G  A  I  D  C  I  M  S  E  A  *  V  P  N  E  K  E  D  L  C  Y  I  L  A  I  K  K  K  L  C  W  I  F  N  L  P  S  D  I  V  L  L  Q  M  G  P  L  K  N  N  L  R  S  F  C  F  T  W  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79036" stop="79149"/>
                    <exon start="79778" stop="79886"/>
                    <exon start="80826" stop="80861"/>
                    <exon start="81151" stop="81265"/>
                    <exon start="81412" stop="81493"/>
                    <exon start="82006" stop="82101"/>
                    <exon start="82238" stop="82339"/>
                    <exon start="82434" stop="82550"/>
                    <exon start="82641" stop="82757"/>
                    <exon start="83222" stop="83293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQSNMARKKIREYDSKRLLREHLKRLAGIDLQICSAQVTESTDFTELTNKEPWLSSTKLVVKPDMLFGKRGKSGNFLMGVFDVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGSIEFPLPFGRVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATANPDGRKRALIVGGGIANFTDVAATFNGIIRALREKEAKLKAARMHIYVRRGGPNYQTGLAKMRALGEELGVPLEVYGPEATMTGICKGAIDCIMSEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="88761" PGL_stop="90037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88761" e_stop="89021"/>
            <exon e_start="89140" e_stop="90037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88761" e_stop="89021" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89022" i_stop="89139" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="89140" e_stop="90037" e_length="898"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88761" stop="89021"/>
              <exon start="89140" stop="89642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88762" stop="89021"/>
              <exon start="89140" stop="89460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89402" stop="90037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGG : GGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTAGAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCATTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGACTTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGATCCAATTGCTCCACTTGACGTTGATACTCCAAATAGGCTGGACAATAAGTACTATCTCAATTTGAAGAATAAGAGAGGAGTGTTAACCTCAGATCAGACGCTATGGAACAGTCCTTCAACGGCTAGGATGGCGAGGAGTAACGCGATTCATGGTGCGAATTGGGCTCATAAATTTGCTGATGCAATGGTGAAAATGGGATCCATAGAGGTTATGACTGGGATACAGGGAGAGATCAGGAAGAATTGCAGGGTTGTGAATTAATCTATTAATACTTCTTCTTTTTTTTTGTTCTTGTAATTGTATCATCACATTTTTTTTTTATTCATTTTCAATGTCGATAACAAAGTAACTGATTCTTTTCAATTGTCATAATTTAAATATATTGATTTAAGAG</gDNA_template>
            <first_frame> V  I  N  S  I  *  I  T  P  L  F  K  S  L  *  L  K  H  I  T  M  K  L  S  T  L  F  I  L  Y  F  F  T  V  S  T  L  A  N  A  S  L  K  I  G  Y  Y  H  S  S  C  P  N  A  E  S  I  V  R  K  A  V  N  K  A  V  S  R  N  P  G  L  G  A  G  I  I  R  M  H  F  H  D  C  F  V  R  :  G  C  D  A  S  I  L  L  D  P  T  P  G  N  P  T  E  K  E  H  P  A  N  N  P  S  L  R  G  Y  E  V  I  D  E  A  K  I  E  L  E  S  I  C  P  E  T  V  S  C  S  D  I  I  A  F  A  A  R  D  S  A  F  K  L  G  G  I  R  Y  S  V  P  S  G  R  R  D  G  R  V  S  I  K  D  E  P  T  A  N  L  P  P  S  T  L  N  A  G  E  L  E  E  N  F  A  K  K  G  L  S  L  D  E  M  V  T  L  S  G  A  H  S  I  G  R  S  H  C  S  S  F  S  D  R  L  Y  S  F  N  S  T  H  P  Q  D  P  S  M  D  P  K  L  A  Q  Q  L  I  K  R  C  P  R  P  S  T  T  D  P  I  A  P  L  D  V  D  T  P  N  R  L  D  N  K  Y  Y  L  N  L  K  N  K  R  G  V  L  T  S  D  Q  T  L  W  N  S  P  S  T  A  R  M  A  R  S  N  A  I  H  G  A  N  W  A  H  K  F  A  D  A  M  V  K  M  G  S  I  E  V  M  T  G  I  Q  G  E  I  R  K  N  C  R  V  V  N  *  S  I  N  T  S  S  F  F  L  F  L  *  L  Y  H  H  I  F  F  L  F  I  F  N  V  D  N  K  V  T  D  S  F  Q  L  S  *  F  K  Y  I  D  L  R  </first_frame>
            <second_frame>  S  *  I  V  Y  K  L  L  H  F  S  N  P  Y  N  *  N  T  *  R  *  N  C  Q  L  C  S  S  Y  I  F  S  L  F  L  H  L  Q  M  H  L  L  R  L  V  T  T  I  Q  V  A  Q  M  Q  N  P  L  S  E  K  Q  S  T  K  P  S  L  V  T  L  A  L  A  L  A  L  S  G  C  I  S  M  I  V  L  L  G :   D  V  M  P  Q  S  F  W  I  Q  L  Q  G  I  Q  Q  K  K  N  I  Q  Q  I  I  Q  A  Y  E  A  M  K  *  S  T  K  Q  K  L  N  *  N  L  F  A  Q  K  Q  F  H  V  Q  I  S  L  H  L  L  Q  E  I  V  L  L  S  L  E  A  L  D  I  Q  F  H  Q  V  V  E  M  E  E  Y  P  L  K  T  N  Q  P  Q  I  S  P  L  P  H  *  M  L  E  S  L  R  K  I  L  Q  K  K  D  F  L  *  M  R  W  S  H  F  R  V  H  I  L  L  E  D  H  I  V  L  P  F  Q  I  D  F  T  L  S  I  Q  L  T  R  K  I  L  R  W  I  L  N  *  P  N  N  *  S  R  D  V  R  V  L  L  P  L  I  Q  L  L  H  L  T  L  I  L  Q  I  G  W  T  I  S  T  I  S  I  *  R  I  R  E  E  C  *  P  Q  I  R  R  Y  G  T  V  L  Q  R  L  G  W  R  G  V  T  R  F  M  V  R  I  G  L  I  N  L  L  M  Q  W  *  K  W  D  P  *  R  L  *  L  G  Y  R  E  R  S  G  R  I  A  G  L  *  I  N  L  L  I  L  L  L  F  F  C  S  C  N  C  I  I  T  F  F  F  Y  S  F  S  M  S  I  T  K  *  L  I  L  F  N  C  H  N  L  N  I  L  I  *  E </second_frame>
            <third_frame>   H  K  *  Y  I  N  Y  S  T  F  Q  I  P  I  T  K  T  H  N  D  E  I  V  N  F  V  H  L  I  F  F  H  C  F  Y  T  C  K  C  I  S  *  D  W  L  L  P  F  K  L  P  K  C  R  I  H  C  Q  K  S  S  Q  Q  S  R  L  S  *  P  W  P  W  R  W  H  Y  Q  D  A  F  P  *  L  F  C  *   : G  M  *  C  L  N  P  F  G  S  N  S  R  E  S  N  R  K  R  T  S  S  K  *  S  K  L  T  R  L  *  S  D  R  R  S  K  N  *  T  R  I  Y  L  P  R  N  S  F  M  F  R  Y  H  C  I  C  C  K  R  *  C  F  *  A  W  R  H  *  I  F  S  S  I  R  S  S  R  W  K  S  I  H  *  R  R  T  N  R  K  S  P  P  F  H  I  K  C  W  R  A  *  G  K  F  C  K  K  R  T  F  F  R  *  D  G  H  T  F  G  C  T  F  Y  W  K  I  T  L  F  F  L  F  R  *  T  L  L  F  Q  F  N  S  P  A  R  S  F  D  G  S  *  I  S  P  T  I  D  Q  E  M  S  A  S  F  Y  H  *  S  N  C  S  T  *  R  *  Y  S  K  *  A  G  Q  *  V  L  S  Q  F  E  E  *  E  R  S  V  N  L  R  S  D  A  M  E  Q  S  F  N  G  *  D  G  E  E  *  R  D  S  W  C  E  L  G  S  *  I  C  *  C  N  G  E  N  G  I  H  R  G  Y  D  W  D  T  G  R  D  Q  E  E  L  Q  G  C  E  L  I  Y  *  Y  F  F  F  F  F  V  L  V  I  V  S  S  H  F  F  F  I  H  F  Q  C  R  *  Q  S  N  *  F  F  S  I  V  I  I  *  I  Y  *  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88806" stop="89021"/>
                    <exon start="89140" stop="89904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKHITMKLSTLFILYFFTVSTLANASLKIGYYHSSCPNAESIVRKAVNKAVSRNPGLGAGIIRMHFHDCFVRGCDASILLDPTPGNPTEKEHPANNPSLRGYEVIDEAKIELESICPETVSCSDIIAFAARDSAFKLGGIRYSVPSGRRDGRVSIKDEPTANLPPSTLNAGELEENFAKKGLSLDEMVTLSGAHSIGRSHCSSFSDRLYSFNSTHPQDPSMDPKLAQQLIKRCPRPSTTDPIAPLDVDTPNRLDNKYYLNLKNKRGVLTSDQTLWNSPSTARMARSNAIHGANWAHKFADAMVKMGSIEVMTGIQGEIRKNCRVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
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      <AGS_information>
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          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97018" e_stop="97162" e_length="145"/>
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          <intron i_serial="1" don_prob="0.976" acc_prob="0.997">
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        </exon-intron_info>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725058" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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              <exon start="98233" stop="99151"/>
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          </PGS_line>
          <PGS_line>
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              <exon start="98245" stop="98732"/>
            </gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248903" strand="+"/>
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          <PGS_line>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="98319" stop="98903"/>
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          <PGS_line>
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              <exon start="98322" stop="98902"/>
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            <referenceDNA id="SGN-E248850" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98373" stop="98939"/>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98416" stop="99167"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E263406" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98475" stop="99335"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E244821" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E715297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E235210" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99154" stop="99489"/>
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            <referenceDNA id="SGN-E322158" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E220165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99190" stop="99487"/>
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            <referenceDNA id="SGN-E309693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99198" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99301" stop="99473"/>
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            <referenceDNA id="SGN-E222432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAAAACTCGCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG : AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCATTTGTGGAATGATTTTCTTTATTGAAAAAAAG</gDNA_template>
            <first_frame> S  K  N  S  Q  A  F  G  E  P  K  I  Q  R  G  Y  F  S  Q  G  V  K  R  L  P  L  F  D  I  Y  N  P  L  F  L  F  V  R  R  W  V  L  H  F  P  V  S  *   : E  W  K  L  S  Y  S  P  P  S  L  *  T  R  V  T  Q  T  S  S  V  I  R  S  L  M  Q  F  L  M  P  A  L  S  K  I  P  R  A  K  L  H  V  K  L  A  P  R  P  T  W  S  W  S  L  V  R  S  Q  P  R  L  L  *  T  M  R  R  L  C  V  T  H  A  V  I  L  D  L  F  L  M  M  L  V  L  M  L  T  T  A  R  S  L  F  T  L  S  S  K  V  L  I  L  L  K  V  S  T  A  I  *  P  N  A  P  R  R  L  V  L  V  T  R  A  T  C  L  A  M  Q  Q  M  R  P  L  N  *  C  L  S  V  T  C  L  Q  L  N  L  V  P  V  L  Q  K  S  A  R  M  A  P  A  P  G  *  G  L  M  A  R  P  K  L  L  L  S  I  A  M  T  M  V  P  W  F  Q  L  G  Y  T  L  F  L  S  P  P  N  T  M  R  P  L  P  M  M  R  L  P  A  T  L  R  S  M  S  S  N  Q  S  S  Q  R  S  T  L  M  R  I  L  F  S  T  L  T  H  L  A  D  S  L  L  V  D  L  M  V  M  L  V  S  L  V  V  K  S  S  S  T  L  M  V  V  G  V  L  M  V  V  V  L  S  R  A  K  T  Q  P  R  S  T  G  V  V  H  T  L  *  G  R  L  Q  R  V  S  *  L  V  D  L  L  V  D  A  S  C  R  Y  L  M  P  S  V  C  L  S  H  C  L  Y  S  L  T  P  M  A  L  E  R  S  L  T  G  K  F  *  R  S  L  R  R  T  L  T  S  D  L  E  *  C  P  L  T  W  I  *  R  G  V  A  I  E  D  S  *  K  L  L  P  M  V  T  L  D  V  M  T  P  I  S  H  G  K  L  S  S  P  S  S  G  K  S  P  K  T  N  K  C  L  P  M  F  L  F  F  V  V  C  L  W  L  *  N  L  P  R  V  C  L  F  V  F  V  F  S  L  L  T  L  Y  F  V  I  V  L  F  P  L  C  W  M  D  I  L  G  L  G  I  L  R  K  E  K  E  I  L  L  Y  T  *  K  L  V  H  L  W  N  D  F  L  Y  *  K  K  </first_frame>
            <second_frame>  V  K  T  R  K  H  L  A  N  Q  K  Y  K  E  V  I  S  L  K  G  *  K  D  C  P  F  S  T  F  I  I  L  F  F  S  L  F  A  V  G  F  F  T  F  L  F  L  E  :  N  G  N  F  L  I  H  L  R  V  C  E  R  G  S  P  R  Q  A  L  *  S  D  L  *  C  S  S  *  C  L  P  *  A  R  S  R  E  Q  S  C  M  *  N  L  H  Q  D  Q  L  G  H  G  L  W  *  D  H  N  Q  G  Y  C  R  L  *  E  D  C  A  *  H  M  P  *  Y  W  I  C  F  *  *  C  W  S  *  C  *  Q  L  Q  G  P  C  L  H  *  A  A  K  S  *  Y  C  S  R  C  P  R  P  S  D  Q  T  P  R  G  D  W  C  W  *  P  G  P  H  V  W  L  C  N  R  *  D  P  *  I  N  A  S  Q  S  R  A  C  N  *  T  W  C  P  S  Y  R  S  P  Q  E  W  H  L  R  L  V  E  A  *  W  Q  D  P  S  Y  C  *  V  *  Q  *  Q  W  C  H  G  S  N  *  G  T  H  C  S  Y  L  H  P  T  R  *  D  R  Y  Q  *  *  D  C  P  R  P  *  G  A  C  H  Q  T  S  H  P  R  E  V  P  *  *  E  Y  Y  F  P  P  *  P  I  W  P  I  R  Y  W  W  T  S  W  *  C  W  S  H  W  S  *  N  H  H  R  H  L  W  W  L  G  C  S  W  W  W  C  F  L  G  Q  R  P  N  Q  G  R  Q  E  W  C  I  H  C  K  A  G  C  K  E  Y  R  S  *  W  T  C  S  *  M  H  R  A  G  I  L  C  H  R  C  A  *  A  I  V  C  I  R  *  H  L  W  H  W  K  D  P  *  Q  G  N  F  E  D  R  *  G  E  L  *  L  Q  T  W  N  D  V  H  *  L  G  F  E  E  G  W  Q  *  K  I  L  E  N  C  C  L  W  S  L  W  T  *  *  P  R  F  H  M  G  S  C  Q  A  P  Q  V  G  K  A  P  R  L  I  S  A  C  L  C  F  C  S  L  L  F  A  C  G  F  R  I  S  P  V  F  A  C  L  S  L  Y  F  L  F  *  P  F  I  L  L  L  S  C  F  H  C  V  G  W  I  S  *  A  L  E  Y  *  G  K  K  K  K  Y  Y  Y  I  L  E  N  *  C  I  C  G  M  I  F  F  I  E  K  K </second_frame>
            <third_frame>   *  K  L  A  S  I  W  R  T  K  N  T  K  R  L  F  L  S  R  G  K  K  I  A  P  F  R  H  L  *  S  S  F  S  L  C  S  P  L  G  S  S  L  S  C  F  L  R :   M  E  T  F  L  F  T  S  E  S  V  N  E  G  H  P  D  K  L  C  D  Q  I  S  D  A  V  L  D  A  C  L  E  Q  D  P  E  S  K  V  A  C  E  T  C  T  K  T  N  L  V  M  V  F  G  E  I  T  T  K  A  I  V  D  Y  E  K  I  V  R  D  T  C  R  N  I  G  F  V  S  D  D  V  G  L  D  A  D  N  C  K  V  L  V  Y  I  E  Q  Q  S  P  D  I  A  Q  G  V  H  G  H  L  T  K  R  P  E  E  I  G  A  G  D  Q  G  H  M  F  G  Y  A  T  D  E  T  P  E  L  M  P  L  S  H  V  L  A  T  K  L  G  A  R  L  T  E  V  R  K  N  G  T  C  A  W  L  R  P  D  G  K  T  Q  V  T  V  E  Y  S  N  D  N  G  A  M  V  P  I  R  V  H  T  V  L  I  S  T  Q  H  D  E  T  V  T  N  D  E  I  A  R  D  L  K  E  H  V  I  K  P  V  I  P  E  K  Y  L  D  E  N  T  I  F  H  L  N  P  S  G  R  F  V  I  G  G  P  H  G  D  A  G  L  T  G  R  K  I  I  I  D  T  Y  G  G  W  G  A  H  G  G  G  A  F  S  G  K  D  P  T  K  V  D  R  S  G  A  Y  I  V  R  Q  A  A  K  S  I  V  A  S  G  L  A  R  R  C  I  V  Q  V  S  Y  A  I  G  V  P  E  P  L  S  V  F  V  D  T  Y  G  T  G  K  I  P  D  R  E  I  L  K  I  V  K  E  N  F  D  F  R  P  G  M  M  S  I  N  L  D  L  K  R  G  G  N  R  R  F  L  K  T  A  A  Y  G  H  F  G  R  D  D  P  D  F  T  W  E  V  V  K  P  L  K  W  E  K  P  Q  D  *  *  V  L  A  Y  V  F  V  L  C  C  L  L  V  A  L  E  S  P  P  C  L  L  V  C  L  C  I  F  S  F  D  P  L  F  C  Y  C  P  V  S  I  V  L  D  G  Y  L  R  P  W  N  I  K  E  R  K  R  N  I  I  I  Y  L  K  I  S  A  F  V  E  *  F  S  L  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97110" stop="97162"/>
                    <exon start="98108" stop="99290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFSLCSPLGSSLSCFLRMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYSNDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99294" stop="99506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAYVFVLCCLLVALESPPCLLVCLCIFSFDPLFCYCPVSIVLDGYLRPWNIKERKRNIIIYLKISAFVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98036" e_stop="99526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="98036" e_stop="99526" e_length="1491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98036" stop="98921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98036" stop="98884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98101" stop="98860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98105" stop="98798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98114" stop="98719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98117" stop="98590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98141" stop="98797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98145" stop="98655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98154" stop="98566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98155" stop="98625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98162" stop="98505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98173" stop="98793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98174" stop="98934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98188" stop="98704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98192" stop="98726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98201" stop="99111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98202" stop="98648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98210" stop="98796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98212" stop="99017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98216" stop="98649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98223" stop="98796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98233" stop="99151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98245" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98249" stop="98879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98279" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98279" stop="98733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98285" stop="99064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98306" stop="98721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98309" stop="98595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98318" stop="98707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98319" stop="98903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98322" stop="98902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98327" stop="99162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98336" stop="99164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98364" stop="99239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98368" stop="99167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98373" stop="98939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98385" stop="99212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98400" stop="99207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98404" stop="98924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98404" stop="98920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98416" stop="99167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98416" stop="98812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98418" stop="99223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98433" stop="99249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98458" stop="99327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98461" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98462" stop="99309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98468" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98471" stop="99016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98475" stop="99335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98481" stop="98906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="98965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98497" stop="99033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98498" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98498" stop="99066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98520" stop="99298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98525" stop="99099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98529" stop="98814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98534" stop="99212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98567" stop="98818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98581" stop="99365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98590" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98595" stop="99111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98600" stop="98961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98606" stop="99109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98642" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98652" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98725" stop="99264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98752" stop="99278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98768" stop="99246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98768" stop="99245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="99314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="99311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98814" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98815" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98822" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98863" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98874" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98899" stop="99396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98915" stop="99295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98922" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202485" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98924" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300064" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98931" stop="99496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98931" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98936" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98954" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98954" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98965" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98968" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98978" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98979" stop="99526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98994" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98994" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99001" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99001" stop="99472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99015" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99016" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99050" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99078" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99102" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99104" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99125" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99132" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99132" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99154" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322158" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99168" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99190" stop="99487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99198" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99301" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCATTTGTGGAATGATTTTCTTTATTGAAAAAAAG</gDNA_template>
            <first_frame> A  L  F  L  F  I  L  C  L  L  L  Y  T  *  T  C  V  I  D  F  I  F  L  *  N  G  N  F  L  I  H  L  R  V  C  E  R  G  S  P  R  Q  A  L  *  S  D  L  *  C  S  S  *  C  L  P  *  A  R  S  R  E  Q  S  C  M  *  N  L  H  Q  D  Q  L  G  H  G  L  W  *  D  H  N  Q  G  Y  C  R  L  *  E  D  C  A  *  H  M  P  *  Y  W  I  C  F  *  *  C  W  S  *  C  *  Q  L  Q  G  P  C  L  H  *  A  A  K  S  *  Y  C  S  R  C  P  R  P  S  D  Q  T  P  R  G  D  W  C  W  *  P  G  P  H  V  W  L  C  N  R  *  D  P  *  I  N  A  S  Q  S  R  A  C  N  *  T  W  C  P  S  Y  R  S  P  Q  E  W  H  L  R  L  V  E  A  *  W  Q  D  P  S  Y  C  *  V  *  Q  *  Q  W  C  H  G  S  N  *  G  T  H  C  S  Y  L  H  P  T  R  *  D  R  Y  Q  *  *  D  C  P  R  P  *  G  A  C  H  Q  T  S  H  P  R  E  V  P  *  *  E  Y  Y  F  P  P  *  P  I  W  P  I  R  Y  W  W  T  S  W  *  C  W  S  H  W  S  *  N  H  H  R  H  L  W  W  L  G  C  S  W  W  W  C  F  L  G  Q  R  P  N  Q  G  R  Q  E  W  C  I  H  C  K  A  G  C  K  E  Y  R  S  *  W  T  C  S  *  M  H  R  A  G  I  L  C  H  R  C  A  *  A  I  V  C  I  R  *  H  L  W  H  W  K  D  P  *  Q  G  N  F  E  D  R  *  G  E  L  *  L  Q  T  W  N  D  V  H  *  L  G  F  E  E  G  W  Q  *  K  I  L  E  N  C  C  L  W  S  L  W  T  *  *  P  R  F  H  M  G  S  C  Q  A  P  Q  V  G  K  A  P  R  L  I  S  A  C  L  C  F  C  S  L  L  F  A  C  G  F  R  I  S  P  V  F  A  C  L  S  L  Y  F  L  F  *  P  F  I  L  L  L  S  C  F  H  C  V  G  W  I  S  *  A  L  E  Y  *  G  K  K  K  K  Y  Y  Y  I  L  E  N  *  C  I  C  G  M  I  F  F  I  E  K  K </first_frame>
            <second_frame>  L  Y  F  S  L  Y  C  A  F  F  Y  I  L  E  L  V  *  L  I  L  S  S  C  R  M  E  T  F  L  F  T  S  E  S  V  N  E  G  H  P  D  K  L  C  D  Q  I  S  D  A  V  L  D  A  C  L  E  Q  D  P  E  S  K  V  A  C  E  T  C  T  K  T  N  L  V  M  V  F  G  E  I  T  T  K  A  I  V  D  Y  E  K  I  V  R  D  T  C  R  N  I  G  F  V  S  D  D  V  G  L  D  A  D  N  C  K  V  L  V  Y  I  E  Q  Q  S  P  D  I  A  Q  G  V  H  G  H  L  T  K  R  P  E  E  I  G  A  G  D  Q  G  H  M  F  G  Y  A  T  D  E  T  P  E  L  M  P  L  S  H  V  L  A  T  K  L  G  A  R  L  T  E  V  R  K  N  G  T  C  A  W  L  R  P  D  G  K  T  Q  V  T  V  E  Y  S  N  D  N  G  A  M  V  P  I  R  V  H  T  V  L  I  S  T  Q  H  D  E  T  V  T  N  D  E  I  A  R  D  L  K  E  H  V  I  K  P  V  I  P  E  K  Y  L  D  E  N  T  I  F  H  L  N  P  S  G  R  F  V  I  G  G  P  H  G  D  A  G  L  T  G  R  K  I  I  I  D  T  Y  G  G  W  G  A  H  G  G  G  A  F  S  G  K  D  P  T  K  V  D  R  S  G  A  Y  I  V  R  Q  A  A  K  S  I  V  A  S  G  L  A  R  R  C  I  V  Q  V  S  Y  A  I  G  V  P  E  P  L  S  V  F  V  D  T  Y  G  T  G  K  I  P  D  R  E  I  L  K  I  V  K  E  N  F  D  F  R  P  G  M  M  S  I  N  L  D  L  K  R  G  G  N  R  R  F  L  K  T  A  A  Y  G  H  F  G  R  D  D  P  D  F  T  W  E  V  V  K  P  L  K  W  E  K  P  Q  D  *  *  V  L  A  Y  V  F  V  L  C  C  L  L  V  A  L  E  S  P  P  C  L  L  V  C  L  C  I  F  S  F  D  P  L  F  C  Y  C  P  V  S  I  V  L  D  G  Y  L  R  P  W  N  I  K  E  R  K  R  N  I  I  I  Y  L  K  I  S  A  F  V  E  *  F  S  L  L  K  K   </second_frame>
            <third_frame>   F  I  S  L  Y  I  V  P  S  F  I  Y  L  N  L  C  N  *  F  Y  L  L  V  E  W  K  L  S  Y  S  P  P  S  L  *  T  R  V  T  Q  T  S  S  V  I  R  S  L  M  Q  F  L  M  P  A  L  S  K  I  P  R  A  K  L  H  V  K  L  A  P  R  P  T  W  S  W  S  L  V  R  S  Q  P  R  L  L  *  T  M  R  R  L  C  V  T  H  A  V  I  L  D  L  F  L  M  M  L  V  L  M  L  T  T  A  R  S  L  F  T  L  S  S  K  V  L  I  L  L  K  V  S  T  A  I  *  P  N  A  P  R  R  L  V  L  V  T  R  A  T  C  L  A  M  Q  Q  M  R  P  L  N  *  C  L  S  V  T  C  L  Q  L  N  L  V  P  V  L  Q  K  S  A  R  M  A  P  A  P  G  *  G  L  M  A  R  P  K  L  L  L  S  I  A  M  T  M  V  P  W  F  Q  L  G  Y  T  L  F  L  S  P  P  N  T  M  R  P  L  P  M  M  R  L  P  A  T  L  R  S  M  S  S  N  Q  S  S  Q  R  S  T  L  M  R  I  L  F  S  T  L  T  H  L  A  D  S  L  L  V  D  L  M  V  M  L  V  S  L  V  V  K  S  S  S  T  L  M  V  V  G  V  L  M  V  V  V  L  S  R  A  K  T  Q  P  R  S  T  G  V  V  H  T  L  *  G  R  L  Q  R  V  S  *  L  V  D  L  L  V  D  A  S  C  R  Y  L  M  P  S  V  C  L  S  H  C  L  Y  S  L  T  P  M  A  L  E  R  S  L  T  G  K  F  *  R  S  L  R  R  T  L  T  S  D  L  E  *  C  P  L  T  W  I  *  R  G  V  A  I  E  D  S  *  K  L  L  P  M  V  T  L  D  V  M  T  P  I  S  H  G  K  L  S  S  P  S  S  G  K  S  P  K  T  N  K  C  L  P  M  F  L  F  F  V  V  C  L  W  L  *  N  L  P  R  V  C  L  F  V  F  V  F  S  L  L  T  L  Y  F  V  I  V  L  F  P  L  C  W  M  D  I  L  G  L  G  I  L  R  K  E  K  E  I  L  L  Y  T  *  K  L  V  H  L  W  N  D  F  L  Y  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98088" stop="99290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILSSCRMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYSNDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99294" stop="99506"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAYVFVLCCLLVALESPPCLLVCLCIFSFDPLFCYCPVSIVLDGYLRPWNIKERKRNIIIYLKISAFVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97082" e_stop="97162"/>
            <exon e_start="97746" e_stop="97827"/>
            <exon e_start="98108" e_stop="99526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.472" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97082" e_stop="97162" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97163" i_stop="97745" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97746" e_stop="97827" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.472" acc_prob="0.997">
            <gDNA_intron_boundary i_start="97828" i_stop="98107" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="98108" e_stop="99526" e_length="1419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97082" stop="97162"/>
              <exon start="97746" stop="97827"/>
              <exon start="98108" stop="98415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98114" stop="98719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98117" stop="98590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98141" stop="98797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98145" stop="98655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98154" stop="98566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98155" stop="98625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98162" stop="98505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98173" stop="98793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98174" stop="98934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98188" stop="98704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98192" stop="98726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98201" stop="99111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98202" stop="98648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98210" stop="98796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98212" stop="99017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98216" stop="98649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98223" stop="98796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98233" stop="99151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98245" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98249" stop="98879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98279" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98279" stop="98733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98285" stop="99064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98306" stop="98721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98309" stop="98595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98318" stop="98707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98319" stop="98903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98322" stop="98902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98327" stop="99162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98336" stop="99164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98364" stop="99239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98368" stop="99167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98373" stop="98939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98385" stop="99212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98400" stop="99207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98404" stop="98924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98404" stop="98920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98416" stop="99167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98416" stop="98812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98418" stop="99223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98433" stop="99249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98458" stop="99327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98461" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98462" stop="99309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98468" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98471" stop="99016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98475" stop="99335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98481" stop="98906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="98965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98497" stop="99033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98498" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98498" stop="99066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98520" stop="99298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98525" stop="99099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98529" stop="98814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98534" stop="99212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98567" stop="98818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98581" stop="99365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98590" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98595" stop="99111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98600" stop="98961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98606" stop="99109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98642" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98652" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98725" stop="99264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98752" stop="99278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98768" stop="99246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98768" stop="99245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="99314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="99311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98814" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98815" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98822" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98863" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98874" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98899" stop="99396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98915" stop="99295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98922" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202485" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98924" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300064" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98931" stop="99496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98931" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98936" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98954" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98954" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98965" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98968" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98978" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98979" stop="99526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98994" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98994" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99001" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99001" stop="99472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99015" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99016" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99050" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99078" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99102" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99104" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99125" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99132" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99132" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99154" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322158" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99168" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99190" stop="99487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99198" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99301" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG : ATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAG : AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCATTTGTGGAATGATTTTCTTTATTGAAAAAAAG</gDNA_template>
            <first_frame> K  D  C  P  F  S  T  F  I  I  L  F  F  S  L  F  A  V  G  F  F  T  F  L  F  L  E  :  I  L  V  K  I  G  G  P  A  *  Y  F  I  G  K  K  R  F  H  W  A  F  S  L  I  L  S   : E  W  K  L  S  Y  S  P  P  S  L  *  T  R  V  T  Q  T  S  S  V  I  R  S  L  M  Q  F  L  M  P  A  L  S  K  I  P  R  A  K  L  H  V  K  L  A  P  R  P  T  W  S  W  S  L  V  R  S  Q  P  R  L  L  *  T  M  R  R  L  C  V  T  H  A  V  I  L  D  L  F  L  M  M  L  V  L  M  L  T  T  A  R  S  L  F  T  L  S  S  K  V  L  I  L  L  K  V  S  T  A  I  *  P  N  A  P  R  R  L  V  L  V  T  R  A  T  C  L  A  M  Q  Q  M  R  P  L  N  *  C  L  S  V  T  C  L  Q  L  N  L  V  P  V  L  Q  K  S  A  R  M  A  P  A  P  G  *  G  L  M  A  R  P  K  L  L  L  S  I  A  M  T  M  V  P  W  F  Q  L  G  Y  T  L  F  L  S  P  P  N  T  M  R  P  L  P  M  M  R  L  P  A  T  L  R  S  M  S  S  N  Q  S  S  Q  R  S  T  L  M  R  I  L  F  S  T  L  T  H  L  A  D  S  L  L  V  D  L  M  V  M  L  V  S  L  V  V  K  S  S  S  T  L  M  V  V  G  V  L  M  V  V  V  L  S  R  A  K  T  Q  P  R  S  T  G  V  V  H  T  L  *  G  R  L  Q  R  V  S  *  L  V  D  L  L  V  D  A  S  C  R  Y  L  M  P  S  V  C  L  S  H  C  L  Y  S  L  T  P  M  A  L  E  R  S  L  T  G  K  F  *  R  S  L  R  R  T  L  T  S  D  L  E  *  C  P  L  T  W  I  *  R  G  V  A  I  E  D  S  *  K  L  L  P  M  V  T  L  D  V  M  T  P  I  S  H  G  K  L  S  S  P  S  S  G  K  S  P  K  T  N  K  C  L  P  M  F  L  F  F  V  V  C  L  W  L  *  N  L  P  R  V  C  L  F  V  F  V  F  S  L  L  T  L  Y  F  V  I  V  L  F  P  L  C  W  M  D  I  L  G  L  G  I  L  R  K  E  K  E  I  L  L  Y  T  *  K  L  V  H  L  W  N  D  F  L  Y  *  K  K  </first_frame>
            <second_frame>  K  I  A  P  F  R  H  L  *  S  S  F  S  L  C  S  P  L  G  S  S  L  S  C  F  L  R :   S  L  S  K  L  V  V  Q  L  D  I  L  *  V  K  R  D  F  I  G  P  F  L  *  F  C  Q  :  N  G  N  F  L  I  H  L  R  V  C  E  R  G  S  P  R  Q  A  L  *  S  D  L  *  C  S  S  *  C  L  P  *  A  R  S  R  E  Q  S  C  M  *  N  L  H  Q  D  Q  L  G  H  G  L  W  *  D  H  N  Q  G  Y  C  R  L  *  E  D  C  A  *  H  M  P  *  Y  W  I  C  F  *  *  C  W  S  *  C  *  Q  L  Q  G  P  C  L  H  *  A  A  K  S  *  Y  C  S  R  C  P  R  P  S  D  Q  T  P  R  G  D  W  C  W  *  P  G  P  H  V  W  L  C  N  R  *  D  P  *  I  N  A  S  Q  S  R  A  C  N  *  T  W  C  P  S  Y  R  S  P  Q  E  W  H  L  R  L  V  E  A  *  W  Q  D  P  S  Y  C  *  V  *  Q  *  Q  W  C  H  G  S  N  *  G  T  H  C  S  Y  L  H  P  T  R  *  D  R  Y  Q  *  *  D  C  P  R  P  *  G  A  C  H  Q  T  S  H  P  R  E  V  P  *  *  E  Y  Y  F  P  P  *  P  I  W  P  I  R  Y  W  W  T  S  W  *  C  W  S  H  W  S  *  N  H  H  R  H  L  W  W  L  G  C  S  W  W  W  C  F  L  G  Q  R  P  N  Q  G  R  Q  E  W  C  I  H  C  K  A  G  C  K  E  Y  R  S  *  W  T  C  S  *  M  H  R  A  G  I  L  C  H  R  C  A  *  A  I  V  C  I  R  *  H  L  W  H  W  K  D  P  *  Q  G  N  F  E  D  R  *  G  E  L  *  L  Q  T  W  N  D  V  H  *  L  G  F  E  E  G  W  Q  *  K  I  L  E  N  C  C  L  W  S  L  W  T  *  *  P  R  F  H  M  G  S  C  Q  A  P  Q  V  G  K  A  P  R  L  I  S  A  C  L  C  F  C  S  L  L  F  A  C  G  F  R  I  S  P  V  F  A  C  L  S  L  Y  F  L  F  *  P  F  I  L  L  L  S  C  F  H  C  V  G  W  I  S  *  A  L  E  Y  *  G  K  K  K  K  Y  Y  Y  I  L  E  N  *  C  I  C  G  M  I  F  F  I  E  K  K </second_frame>
            <third_frame>   R  L  P  L  F  D  I  Y  N  P  L  F  L  F  V  R  R  W  V  L  H  F  P  V  S  *   : D  P  C  Q  N  W  W  S  S  L  I  F  Y  R  *  K  E  I  S  L  G  L  F  F  N  F  V  R :   M  E  T  F  L  F  T  S  E  S  V  N  E  G  H  P  D  K  L  C  D  Q  I  S  D  A  V  L  D  A  C  L  E  Q  D  P  E  S  K  V  A  C  E  T  C  T  K  T  N  L  V  M  V  F  G  E  I  T  T  K  A  I  V  D  Y  E  K  I  V  R  D  T  C  R  N  I  G  F  V  S  D  D  V  G  L  D  A  D  N  C  K  V  L  V  Y  I  E  Q  Q  S  P  D  I  A  Q  G  V  H  G  H  L  T  K  R  P  E  E  I  G  A  G  D  Q  G  H  M  F  G  Y  A  T  D  E  T  P  E  L  M  P  L  S  H  V  L  A  T  K  L  G  A  R  L  T  E  V  R  K  N  G  T  C  A  W  L  R  P  D  G  K  T  Q  V  T  V  E  Y  S  N  D  N  G  A  M  V  P  I  R  V  H  T  V  L  I  S  T  Q  H  D  E  T  V  T  N  D  E  I  A  R  D  L  K  E  H  V  I  K  P  V  I  P  E  K  Y  L  D  E  N  T  I  F  H  L  N  P  S  G  R  F  V  I  G  G  P  H  G  D  A  G  L  T  G  R  K  I  I  I  D  T  Y  G  G  W  G  A  H  G  G  G  A  F  S  G  K  D  P  T  K  V  D  R  S  G  A  Y  I  V  R  Q  A  A  K  S  I  V  A  S  G  L  A  R  R  C  I  V  Q  V  S  Y  A  I  G  V  P  E  P  L  S  V  F  V  D  T  Y  G  T  G  K  I  P  D  R  E  I  L  K  I  V  K  E  N  F  D  F  R  P  G  M  M  S  I  N  L  D  L  K  R  G  G  N  R  R  F  L  K  T  A  A  Y  G  H  F  G  R  D  D  P  D  F  T  W  E  V  V  K  P  L  K  W  E  K  P  Q  D  *  *  V  L  A  Y  V  F  V  L  C  C  L  L  V  A  L  E  S  P  P  C  L  L  V  C  L  C  I  F  S  F  D  P  L  F  C  Y  C  P  V  S  I  V  L  D  G  Y  L  R  P  W  N  I  K  E  R  K  R  N  I  I  I  Y  L  K  I  S  A  F  V  E  *  F  S  L  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97790" stop="97827"/>
                    <exon start="98108" stop="99290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEISLGLFFNFVRMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYSNDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99294" stop="99506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAYVFVLCCLLVALESPPCLLVCLCIFSFDPLFCYCPVSIVLDGYLRPWNIKERKRNIIIYLKISAFVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="96988" e_stop="97060"/>
            <exon e_start="98108" e_stop="99526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.063" acc_prob="0.997" e_score="0.959"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="96988" e_stop="97060" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.063" acc_prob="0.997">
            <gDNA_intron_boundary i_start="97061" i_stop="98107" i_length="1047"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="98108" e_stop="99526" e_length="1419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96988" stop="97060"/>
              <exon start="98108" stop="98751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98108" stop="98281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98114" stop="98719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98117" stop="98590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98141" stop="98797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98145" stop="98655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98154" stop="98566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98155" stop="98625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98162" stop="98505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98173" stop="98793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98174" stop="98934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="98812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98188" stop="98704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98192" stop="98726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98201" stop="99111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98202" stop="98648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98210" stop="98796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98212" stop="99017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98216" stop="98649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98223" stop="98796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98233" stop="99151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98245" stop="98732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98249" stop="98879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98279" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98279" stop="98733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98285" stop="99064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98306" stop="98721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98309" stop="98595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98318" stop="98707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98319" stop="98903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98322" stop="98902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98327" stop="99162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98336" stop="99164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98364" stop="99239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98368" stop="99167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98373" stop="98939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98385" stop="99212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98400" stop="99207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98404" stop="98924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98404" stop="98920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98416" stop="99167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98416" stop="98812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98418" stop="99223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98433" stop="99249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98458" stop="99327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98461" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98462" stop="99309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98468" stop="99166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98471" stop="99016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98475" stop="99335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98481" stop="98906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98488" stop="98965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98497" stop="99033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98498" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98498" stop="99066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98520" stop="99298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98525" stop="99099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98529" stop="98814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98534" stop="99212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="99063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98539" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98567" stop="98818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98581" stop="99365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98590" stop="99110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98595" stop="99111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98600" stop="98961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98606" stop="99109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98642" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98652" stop="99450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98725" stop="99264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98752" stop="99278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98768" stop="99246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98768" stop="99245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="99314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="99311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98814" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98815" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98822" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98863" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98874" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98899" stop="99396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98915" stop="99295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98922" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202485" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98924" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300064" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98931" stop="99496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98931" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98936" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264961" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98954" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98954" stop="99494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98965" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98968" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98978" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98979" stop="99526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98994" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98994" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99001" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99001" stop="99472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99015" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99016" stop="99492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99050" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99078" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99102" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99104" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99125" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99132" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99132" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99154" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322158" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99168" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99190" stop="99487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99198" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99301" stop="99473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCTATAAATAAGACTCCAAAGTCTCAAGTAAAAACTCGCAAGCATTTGGCGAACCAAAAATACAAAGAG : AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGAAGTACCTTGATGAGAATACTATTTTCCACCTTAACCCATCTGGCCGATTCGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCGTAAAATCATCATCGACACTTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAAGACCCAACCAAGGTCGACAGGAGTGGTGCATACATTGTAAGGCAGGCTGCAAAGAGTATCGTAGCTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTAGTGCATTTGTGGAATGATTTTCTTTATTGAAAAAAAG</gDNA_template>
            <first_frame> R  V  Y  K  *  D  S  K  V  S  S  K  N  S  Q  A  F  G  E  P  K  I  Q  R   : E  W  K  L  S  Y  S  P  P  S  L  *  T  R  V  T  Q  T  S  S  V  I  R  S  L  M  Q  F  L  M  P  A  L  S  K  I  P  R  A  K  L  H  V  K  L  A  P  R  P  T  W  S  W  S  L  V  R  S  Q  P  R  L  L  *  T  M  R  R  L  C  V  T  H  A  V  I  L  D  L  F  L  M  M  L  V  L  M  L  T  T  A  R  S  L  F  T  L  S  S  K  V  L  I  L  L  K  V  S  T  A  I  *  P  N  A  P  R  R  L  V  L  V  T  R  A  T  C  L  A  M  Q  Q  M  R  P  L  N  *  C  L  S  V  T  C  L  Q  L  N  L  V  P  V  L  Q  K  S  A  R  M  A  P  A  P  G  *  G  L  M  A  R  P  K  L  L  L  S  I  A  M  T  M  V  P  W  F  Q  L  G  Y  T  L  F  L  S  P  P  N  T  M  R  P  L  P  M  M  R  L  P  A  T  L  R  S  M  S  S  N  Q  S  S  Q  R  S  T  L  M  R  I  L  F  S  T  L  T  H  L  A  D  S  L  L  V  D  L  M  V  M  L  V  S  L  V  V  K  S  S  S  T  L  M  V  V  G  V  L  M  V  V  V  L  S  R  A  K  T  Q  P  R  S  T  G  V  V  H  T  L  *  G  R  L  Q  R  V  S  *  L  V  D  L  L  V  D  A  S  C  R  Y  L  M  P  S  V  C  L  S  H  C  L  Y  S  L  T  P  M  A  L  E  R  S  L  T  G  K  F  *  R  S  L  R  R  T  L  T  S  D  L  E  *  C  P  L  T  W  I  *  R  G  V  A  I  E  D  S  *  K  L  L  P  M  V  T  L  D  V  M  T  P  I  S  H  G  K  L  S  S  P  S  S  G  K  S  P  K  T  N  K  C  L  P  M  F  L  F  F  V  V  C  L  W  L  *  N  L  P  R  V  C  L  F  V  F  V  F  S  L  L  T  L  Y  F  V  I  V  L  F  P  L  C  W  M  D  I  L  G  L  G  I  L  R  K  E  K  E  I  L  L  Y  T  *  K  L  V  H  L  W  N  D  F  L  Y  *  K  K  </first_frame>
            <second_frame>  G  S  I  N  K  T  P  K  S  Q  V  K  T  R  K  H  L  A  N  Q  K  Y  K  E  :  N  G  N  F  L  I  H  L  R  V  C  E  R  G  S  P  R  Q  A  L  *  S  D  L  *  C  S  S  *  C  L  P  *  A  R  S  R  E  Q  S  C  M  *  N  L  H  Q  D  Q  L  G  H  G  L  W  *  D  H  N  Q  G  Y  C  R  L  *  E  D  C  A  *  H  M  P  *  Y  W  I  C  F  *  *  C  W  S  *  C  *  Q  L  Q  G  P  C  L  H  *  A  A  K  S  *  Y  C  S  R  C  P  R  P  S  D  Q  T  P  R  G  D  W  C  W  *  P  G  P  H  V  W  L  C  N  R  *  D  P  *  I  N  A  S  Q  S  R  A  C  N  *  T  W  C  P  S  Y  R  S  P  Q  E  W  H  L  R  L  V  E  A  *  W  Q  D  P  S  Y  C  *  V  *  Q  *  Q  W  C  H  G  S  N  *  G  T  H  C  S  Y  L  H  P  T  R  *  D  R  Y  Q  *  *  D  C  P  R  P  *  G  A  C  H  Q  T  S  H  P  R  E  V  P  *  *  E  Y  Y  F  P  P  *  P  I  W  P  I  R  Y  W  W  T  S  W  *  C  W  S  H  W  S  *  N  H  H  R  H  L  W  W  L  G  C  S  W  W  W  C  F  L  G  Q  R  P  N  Q  G  R  Q  E  W  C  I  H  C  K  A  G  C  K  E  Y  R  S  *  W  T  C  S  *  M  H  R  A  G  I  L  C  H  R  C  A  *  A  I  V  C  I  R  *  H  L  W  H  W  K  D  P  *  Q  G  N  F  E  D  R  *  G  E  L  *  L  Q  T  W  N  D  V  H  *  L  G  F  E  E  G  W  Q  *  K  I  L  E  N  C  C  L  W  S  L  W  T  *  *  P  R  F  H  M  G  S  C  Q  A  P  Q  V  G  K  A  P  R  L  I  S  A  C  L  C  F  C  S  L  L  F  A  C  G  F  R  I  S  P  V  F  A  C  L  S  L  Y  F  L  F  *  P  F  I  L  L  L  S  C  F  H  C  V  G  W  I  S  *  A  L  E  Y  *  G  K  K  K  K  Y  Y  Y  I  L  E  N  *  C  I  C  G  M  I  F  F  I  E  K  K </second_frame>
            <third_frame>   G  L  *  I  R  L  Q  S  L  K  *  K  L  A  S  I  W  R  T  K  N  T  K  R :   M  E  T  F  L  F  T  S  E  S  V  N  E  G  H  P  D  K  L  C  D  Q  I  S  D  A  V  L  D  A  C  L  E  Q  D  P  E  S  K  V  A  C  E  T  C  T  K  T  N  L  V  M  V  F  G  E  I  T  T  K  A  I  V  D  Y  E  K  I  V  R  D  T  C  R  N  I  G  F  V  S  D  D  V  G  L  D  A  D  N  C  K  V  L  V  Y  I  E  Q  Q  S  P  D  I  A  Q  G  V  H  G  H  L  T  K  R  P  E  E  I  G  A  G  D  Q  G  H  M  F  G  Y  A  T  D  E  T  P  E  L  M  P  L  S  H  V  L  A  T  K  L  G  A  R  L  T  E  V  R  K  N  G  T  C  A  W  L  R  P  D  G  K  T  Q  V  T  V  E  Y  S  N  D  N  G  A  M  V  P  I  R  V  H  T  V  L  I  S  T  Q  H  D  E  T  V  T  N  D  E  I  A  R  D  L  K  E  H  V  I  K  P  V  I  P  E  K  Y  L  D  E  N  T  I  F  H  L  N  P  S  G  R  F  V  I  G  G  P  H  G  D  A  G  L  T  G  R  K  I  I  I  D  T  Y  G  G  W  G  A  H  G  G  G  A  F  S  G  K  D  P  T  K  V  D  R  S  G  A  Y  I  V  R  Q  A  A  K  S  I  V  A  S  G  L  A  R  R  C  I  V  Q  V  S  Y  A  I  G  V  P  E  P  L  S  V  F  V  D  T  Y  G  T  G  K  I  P  D  R  E  I  L  K  I  V  K  E  N  F  D  F  R  P  G  M  M  S  I  N  L  D  L  K  R  G  G  N  R  R  F  L  K  T  A  A  Y  G  H  F  G  R  D  D  P  D  F  T  W  E  V  V  K  P  L  K  W  E  K  P  Q  D  *  *  V  L  A  Y  V  F  V  L  C  C  L  L  V  A  L  E  S  P  P  C  L  L  V  C  L  C  I  F  S  F  D  P  L  F  C  Y  C  P  V  S  I  V  L  D  G  Y  L  R  P  W  N  I  K  E  R  K  R  N  I  I  I  Y  L  K  I  S  A  F  V  E  *  F  S  L  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97023" stop="97060"/>
                    <exon start="98108" stop="99290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLASIWRTKNTKRMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYSNDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99294" stop="99506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAYVFVLCCLLVALESPPCLLVCLCIFSFDPLFCYCPVSIVLDGYLRPWNIKERKRNIIIYLKISAFVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="97046" e_stop="97740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="97046" e_stop="97740" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97046" stop="97740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97086" stop="97322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97119" stop="97509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGT</gDNA_template>
            <first_frame> Q  K  Y  K  E  V  I  S  L  K  G  *  K  D  C  P  F  S  T  F  I  I  L  F  F  S  L  F  A  V  G  F  F  T  F  L  F  L  E  V  I  L  S  L  A  S  *  I  L  V  F  F  C  F  F  H  R  V  L  L  F  S  C  W  V  F  Y  D  R  S  G  V  F  V  Q  N  F  F  W  G  F  *  S  D  E  R  L  C  F  Y  L  V  C  L  G  L  V  V  F  *  L  E  C  W  E  Q  G  R  E  G  T  V  S  *  I  W  K  *  T  N  F  S  C  *  F  V  F  P  *  K  F  *  N  A  S  V  F  L  L  L  K  N  P  A  L  Y  *  K  L  *  C  S  Q  H  V  C  F  F  V  K  L  F  L  C  V  L  G  D  L  C  F  F  V  S  *  L  *  I  T  V  C  V  V  F  Q  N  Y  V  E  I  R  S  S  *  L  V  W  W  R  F  C  L  V  R  D  Q  L  D  L  V  Q  I  C  F  C  Q  L  W  S  R  R  F  *  L  N  S  I  V  F  L  K   </first_frame>
            <second_frame>  K  N  T  K  R  L  F  L  S  R  G  K  K  I  A  P  F  R  H  L  *  S  S  F  S  L  C  S  P  L  G  S  S  L  S  C  F  L  R  *  F  *  V  *  L  V  E  Y  *  S  F  S  V  S  F  I  G  F  C  C  F  L  A  G  C  F  M  I  D  L  G  F  L  C  K  I  S  F  G  V  F  E  V  M  K  D  C  V  F  I  W  F  V  *  G  W  L  C  F  S  L  S  V  G  N  R  G  G  K  E  Q  F  L  E  S  G  N  E  L  I  F  P  V  N  L  S  F  H  E  N  F  E  M  L  L  Y  F  C  S  *  K  T  L  L  Y  T  E  N  F  D  V  L  N  M  F  V  F  L  *  N  Y  F  C  V  F  W  V  I  F  V  S  L  Y  H  D  Y  K  L  Q  Y  V  L  F  F  K  I  T  *  R  L  E  V  V  D  W  Y  G  G  G  F  V  L  *  E  I  S  *  I  *  C  K  Y  A  F  A  N  F  G  V  E  D  S  S  L  T  L  L  C  F  *  K  </second_frame>
            <third_frame>   K  I  Q  R  G  Y  F  S  Q  G  V  K  R  L  P  L  F  D  I  Y  N  P  L  F  L  F  V  R  R  W  V  L  H  F  P  V  S  *  G  N  F  K  F  S  *  L  N  T  S  L  F  L  F  L  S  S  G  F  A  V  F  L  L  G  V  L  *  *  I  W  G  F  C  A  K  F  L  L  G  F  L  K  *  *  K  I  V  F  L  F  G  L  F  R  V  G  C  V  L  A  *  V  L  G  T  G  E  G  R  N  S  F  L  N  L  E  M  N  *  F  F  L  L  I  C  L  S  M  K  I  L  K  C  F  C  I  F  A  L  K  K  P  C  F  I  L  K  T  L  M  F  S  T  C  L  F  F  C  K  I  I  F  V  C  S  G  *  S  L  F  L  C  I  M  I  I  N  Y  S  M  C  C  F  S  K  L  R  R  D  *  K  *  L  I  G  M  V  E  V  L  S  C  K  R  S  A  R  S  S  A  N  M  L  L  P  T  L  E  *  K  I  L  A  *  L  Y  C  V  F  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0001H15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="103245" PGL_stop="98758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103245" e_stop="103197"/>
            <exon e_start="103097" e_stop="102807"/>
            <exon e_start="102648" e_stop="102565"/>
            <exon e_start="102466" e_stop="102333"/>
            <exon e_start="102204" e_stop="101977"/>
            <exon e_start="101544" e_stop="101373"/>
            <exon e_start="101238" e_stop="100984"/>
            <exon e_start="100863" e_stop="100418"/>
            <exon e_start="99913" e_stop="99899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.353" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.553" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103245" e_stop="103197" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.353" acc_prob="0.769">
            <gDNA_intron_boundary i_start="103196" i_stop="103098" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103097" e_stop="102807" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102806" i_stop="102649" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102648" e_stop="102565" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.955">
            <gDNA_intron_boundary i_start="102564" i_stop="102467" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102466" e_stop="102333" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102332" i_stop="102205" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102204" e_stop="101977" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.987">
            <gDNA_intron_boundary i_start="101976" i_stop="101545" i_length="432"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101544" e_stop="101373" e_length="172"/>
          </exon>
          <intron i_serial="6" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="101372" i_stop="101239" i_length="134"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101238" e_stop="100984" e_length="255"/>
          </exon>
          <intron i_serial="7" don_prob="0.879" acc_prob="0.812">
            <gDNA_intron_boundary i_start="100983" i_stop="100864" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100863" e_stop="100418" e_length="446"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.553">
            <gDNA_intron_boundary i_start="100417" i_stop="99914" i_length="504"/>
          </intron>
          <exon e_serial="9" e_score="0.800">
            <gDNA_exon_boundary e_start="99913" e_stop="99899" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103245" stop="103197"/>
              <exon start="103097" stop="102807"/>
              <exon start="102648" stop="102565"/>
              <exon start="102466" stop="102333"/>
              <exon start="102204" stop="102007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103245" stop="103197"/>
              <exon start="103097" stop="102807"/>
              <exon start="102648" stop="102565"/>
              <exon start="102466" stop="102333"/>
              <exon start="102204" stop="102018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103244" stop="103197"/>
              <exon start="103097" stop="102807"/>
              <exon start="102648" stop="102594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102114" stop="101977"/>
              <exon start="101544" stop="101373"/>
              <exon start="101238" stop="100984"/>
              <exon start="100863" stop="100791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101402" stop="101373"/>
              <exon start="101238" stop="100984"/>
              <exon start="100863" stop="100418"/>
              <exon start="99913" stop="99899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101113" stop="100984"/>
              <exon start="100863" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATAT : GAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAG : CTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAG : GGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAA : AAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGGATTGCTTTTCTGGAACAAGGGAAAGAAACT : AGATGACCAGCAGAGTGTCTTCAGTGTATTTGGTTCTATGTTCACTGCAGTAATCTTCTGTGGCATAAATAATTCATCTTCAGTTTTACCATATGTGACCACGGAGCGATCAGTCCTATACCGGGAAAGATTTGCTGGAATGTATGCATCATGGGCTTATGCATTAGCACAG : GTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCT : CAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTATT : AAGAAGAAAAAAAAA</gDNA_template>
            <first_frame> F  C  L  A  T  T  S  S  S  D  *  F  Q  N  E  I   : *  V  C  E  R  S  P  R  D  H  *  A  R  W  Y  K  R  H  V  G  W  Y  A  G  C  *  W  A  F  N  R  T  T  *  T  A  D  N  R  C  G  A  C  C  K  S  L  N  Y  L  Y  G  *  T  H  N  R  V  G  R  K  V  S  C  N  C  H  A  G  C  E  K  C  C  *  Y  R  K  N  N  S  L  Y  H  P  P  T  K  H  *  H  I  *  S  I  *  *   : A  D  S  I  E  K  W  W  A  H  D  L  L  G  T  T  R  T  K  F  L  *  N  D  R  I  F  *   : G  Y  L  W  C  A  *  N  K  E  Q  L  Q  S  S  N  M  D  V  R  G  Y  I  N  I  *  *  S  *  D  Q  H  R  L  R  *  S  I  *  E  F  C  S  T  Q  :  K  *  R  R  A  C  E  K  T  D  F  P  T  S  W  F  K  R  F  A  F  P  H  P  I  F  T  E  W  L  G  T  I  Q  D  L  L  L  E  A  I  L  V  L  L  E  E  S  F  I  Q  F  D  A  L  S  A  H  A  F  C  F  R  C  F  W  I  A  F  L  E  Q  G  K  E  T  :  R  *  P  A  E  C  L  Q  C  I  W  F  Y  V  H  C  S  N  L  L  W  H  K  *  F  I  F  S  F  T  I  C  D  H  G  A  I  S  P  I  P  G  K  I  C  W  N  V  C  I  M  G  L  C  I  S  T   : G  G  N  *  N  S  V  S  F  S  S  S  T  F  I  Y  C  H  H  L  F  D  D  W  I  L  L  V  G  P  Q  G  F  V  V  L  L  F  D  V  L  H  I  V  V  L  H  I  L  G  N  D  A  C  F  I  D  T  K  L  A  S  S  C  N  S  P  V  I  L  L  H  N  V  Q  P  L  C  R  I  L  D  T  K  S   : S  N  S  K  M  V  D  L  V  L  L  S  S  T  Y  I  V  D  V  E  W  D  A  Y  F  T  I  W  R  C  *  Y  R  D  Y  C  V  W  R  *  E  I  S  S  S  L  Y  *  G  L  F  W  I  S  P  Q  S  I  T  Y  C  R  C  C  F  D  C  I  P  L  S  F  C  H  F  I  C  I  F  H  W  E  V  E  L  P  K  K  V  M  L  Q  L  I  H  L  L  F  I  E  T  F  D  I  L  S  K  L  N  T  S  P  P  P  F  V  H  *  T  G  E  I  L  L  V  N  K  K  D  K  Q  C  V  T  S  F  N  M  K  E  I  *  K  K  K  N  T  I  I  :  K  K  K  K  K </first_frame>
            <second_frame>  S  A  W  L  R  L  H  P  Q  I  D  S  R  T  K  Y  :  E  F  V  K  E  V  L  E  T  I  E  L  D  G  I  K  D  T  L  V  G  M  P  G  V  S  G  L  S  T  E  Q  R  K  R  L  T  I  A  V  E  L  V  A  N  P  S  I  I  F  M  D  E  P  T  T  G  L  D  A  R  S  A  A  I  V  M  R  A  V  K  N  V  A  D  T  G  R  T  I  V  C  T  I  H  Q  P  S  I  D  I  F  E  A  F  D  E  :  L  I  L  L  K  S  G  G  R  M  I  Y  W  G  P  L  G  R  N  S  C  K  M  I  E  Y  F  E  :  G  I  S  G  V  P  K  I  K  N  N  Y  N  P  A  T  W  M  L  E  V  T  S  T  S  S  E  A  E  T  S  I  D  F  A  E  V  Y  K  N  S  A  L  H  K :   N  N  E  E  L  V  K  K  L  T  F  P  P  A  G  S  K  D  L  H  F  P  T  Q  F  S  Q  N  G  W  G  Q  F  K  T  C  F  W  K  Q  Y  W  S  Y  W  R  S  P  S  Y  N  L  M  R  S  L  H  M  L  F  A  S  V  V  F  G  L  L  F  W  N  K  G  K  K  L :   D  D  Q  Q  S  V  F  S  V  F  G  S  M  F  T  A  V  I  F  C  G  I  N  N  S  S  S  V  L  P  Y  V  T  T  E  R  S  V  L  Y  R  E  R  F  A  G  M  Y  A  S  W  A  Y  A  L  A  Q  :  V  A  I  E  I  P  Y  L  L  A  Q  A  L  S  F  T  V  I  T  Y  S  M  I  G  Y  Y  W  S  A  H  K  V  L  W  Y  F  Y  S  M  F  C  T  L  L  Y  F  T  Y  L  G  M  M  L  V  S  L  T  P  N  L  P  V  A  A  I  L  Q  S  S  F  Y  T  M  F  N  L  F  A  G  F  L  I  P  K  A  :  Q  I  P  K  W  W  I  W  F  Y  Y  L  V  P  T  S  W  T  L  N  G  M  L  T  S  Q  Y  G  D  V  D  T  E  I  T  V  F  G  D  K  K  S  V  A  A  F  I  R  D  Y  F  G  F  H  H  N  Q  L  P  I  V  G  V  V  L  I  A  Y  P  L  V  F  A  T  L  F  A  F  F  I  G  R  L  N  F  Q  R  R  *  C  C  N  L  F  I  C  C  L  *  K  L  L  I  Y  Y  P  N  *  I  L  P  L  L  L  L  Y  I  R  L  V  R  F  Y  W  *  I  K  K  T  N  S  V  L  H  H  L  I  *  R  K  Y  E  K  R  K  I  Q  L  L :   R  R  K  K   </second_frame>
            <third_frame>   L  L  G  Y  D  F  I  L  R  L  I  P  E  R  N  M :   S  L  *  K  K  S  S  R  P  L  S  *  M  V  *  K  T  R  W  L  V  C  R  V  L  V  G  F  Q  Q  N  N  V  N  G  *  Q  S  L  W  S  L  L  Q  I  P  Q  L  S  L  W  M  N  P  Q  Q  G  W  T  Q  G  Q  L  Q  L  S  C  G  L  *  K  M  L  L  I  Q  E  E  Q  *  F  V  P  S  T  N  Q  A  L  T  Y  L  K  H  L  M  S :   *  F  Y  *  K  V  V  G  A  *  S  T  G  D  H  S  D  E  I  L  V  K  *  S  N  I  L  R :   V  S  L  V  C  L  K  *  R  T  T  T  I  Q  Q  H  G  C  *  R  L  H  Q  H  L  V  K  L  R  P  A  *  T  S  L  K  Y  I  R  I  L  L  Y  T   : K  I  T  K  S  L  *  K  N  *  L  S  H  Q  L  V  Q  K  I  C  I  S  P  P  N  F  H  R  M  A  G  D  N  S  R  L  A  S  G  S  N  T  G  P  I  G  G  V  L  H  T  I  *  C  A  L  C  T  C  F  L  L  P  L  F  L  D  C  F  S  G  T  R  E  R  N   : *  M  T  S  R  V  S  S  V  Y  L  V  L  C  S  L  Q  *  S  S  V  A  *  I  I  H  L  Q  F  Y  H  M  *  P  R  S  D  Q  S  Y  T  G  K  D  L  L  E  C  M  H  H  G  L  M  H  *  H  R :   W  Q  L  K  F  R  I  F  *  L  K  H  F  H  L  L  S  S  P  I  R  *  L  D  I  I  G  R  P  T  R  F  C  G  T  S  I  R  C  S  A  H  C  C  T  S  H  T  W  E  *  C  L  F  H  *  H  Q  T  C  Q  *  L  Q  F  S  S  H  P  F  T  Q  C  S  T  S  L  P  D  S  *  Y  Q  K  L :   K  F  Q  N  G  G  S  G  S  I  I  *  Y  L  H  R  G  R  *  M  G  C  L  L  H  N  M  E  M  L  I  Q  R  L  L  C  L  E  I  R  N  Q  *  Q  P  L  L  G  T  I  L  D  F  T  T  I  N  Y  L  L  *  V  L  F  *  L  H  T  P  *  F  L  P  L  Y  L  H  F  S  L  G  G  *  T  S  K  E  G  D  A  A  T  Y  S  F  V  V  Y  R  N  F  *  Y  I  I  Q  I  K  Y  F  P  S  S  F  C  T  L  D  W  *  D  F  I  G  K  *  K  R  Q  T  V  C  Y  I  I  *  Y  E  G  N  M  K  K  E  K  Y  N  Y   : *  E  E  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103244" stop="103197"/>
                    <exon start="103097" stop="102807"/>
                    <exon start="102648" stop="102565"/>
                    <exon start="102466" stop="102333"/>
                    <exon start="102204" stop="101977"/>
                    <exon start="101544" stop="101373"/>
                    <exon start="101238" stop="100984"/>
                    <exon start="100863" stop="100597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1476</number_coding_nucleotides>
                  <number_encoded_amino_acids>492</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAWLRLHPQIDSRTKYEFVKEVLETIELDGIKDTLVGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELILLKSGGRMIYWGPLGRNSCKMIEYFEGISGVPKIKNNYNPATWMLEVTSTSSEAETSIDFAEVYKNSALHKNNEELVKKLTFPPAGSKDLHFPTQFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRSLHMLFASVVFGLLFWNKGKKLDDQQSVFSVFGSMFTAVIFCGINNSSSVLPYVTTERSVLYRERFAGMYASWAYALAQVAIEIPYLLAQALSFTVITYSMIGYYWSAHKVLWYFYSMFCTLLYFTYLGMMLVSLTPNLPVAAILQSSFYTMFNLFAGFLIPKAQIPKWWIWFYYLVPTSWTLNGMLTSQYGDVDTEITVFGDKKSVAAFIRDYFGFHHNQLPIVGVVLIAYPLVFATLFAFFIGRLNFQRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99496" e_stop="98758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="99496" e_stop="98758" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99496" stop="98805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99495" stop="99022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99492" stop="98758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99486" stop="98869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99483" stop="99008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTTAAGGTGGAAAATAGTATTCTCATCAAGGTACTTCTCTGGGATGACTG</gDNA_template>
            <first_frame> N  A  L  I  F  K  Y  I  I  I  F  L  F  L  S  L  I  F  Q  G  L  R  Y  P  S  N  T  M  E  T  G  Q  *  Q  N  K  G  S  K  E  K  I  Q  R  Q  T  S  K  H  G  G  D  S  K  A  T  S  K  Q  Q  R  T  K  T  *  A  S  T  Y  *  S  W  G  F  S  H  L  R  G  L  T  T  S  H  V  K  S  G  S  S  R  P  K  *  P  *  A  A  V  F  K  N  L  L  L  P  P  L  F  K  S  K  L  M  D  I  I  P  G  L  K  S  K  F  S  L  T  I  F  K  I  S  L  S  G  I  F  P  V  P  *  V  S  T  N  T  D  N  G  S  G  T  P  M  A  *  D  T  C  T  M  H  L  R  A  S  P  L  A  T  I  L  F  A  A  C  L  T  M  Y  A  P  L  L  S  T  L  V  G  S  L  P  E  K  A  P  P  P  *  A  P  Q  P  P  *  V  S  M  M  I  L  R  P  V  R  P  A  S  P  *  G  P  P  I  T  N  R  P  D  G  L  R  W  K  I  V  F  S  S  R  Y  F  S  G  M  T  </first_frame>
            <second_frame>  M  H  *  F  S  S  I  *  *  Y  F  F  F  F  P  *  Y  S  K  A  *  D  I  H  P  T  Q  W  K  Q  D  N  N  K  I  K  G  Q  K  R  K  Y  K  D  K  Q  A  N  T  G  E  I  L  K  P  Q  A  N  N  K  E  Q  K  H  R  Q  A  L  I  S  L  G  A  F  P  T  *  G  A  *  Q  L  P  M  *  N  R  G  H  H  V  Q  S  D  H  R  Q  Q  F  S  R  I  F  Y  C  H  P  S  S  N  P  S  *  W  T  S  F  Q  V  *  S  Q  S  S  P  *  R  S  S  K  F  P  C  Q  G  S  F  Q  C  H  R  C  Q  R  I  Q  T  M  A  Q  A  H  R  W  H  K  I  P  A  R  C  I  Y  E  Q  V  H  *  L  R  Y  S  L  Q  P  A  L  Q  C  M  H  H  S  C  R  P  W  L  G  L  C  P  R  K  H  H  H  H  E  H  P  N  H  H  K  C  R  *  *  F  Y  D  Q  *  D  Q  H  H  H  E  V  H  Q  *  R  I  G  Q  M  G  *  G  G  K  *  Y  S  H  Q  G  T  S  L  G  *  L </second_frame>
            <third_frame>   C  T  N  F  Q  V  Y  N  N  I  S  F  S  F  L  N  I  P  R  P  K  I  S  I  Q  H  N  G  N  R  T  I  T  K  *  R  V  K  R  E  N  T  K  T  N  K  Q  T  R  G  R  F  *  S  H  K  Q  T  T  K  N  K  N  I  G  K  H  L  L  V  L  G  L  F  P  L  E  G  L  D  N  F  P  C  E  I  G  V  I  T  S  K  V  T  I  G  S  S  F  Q  E  S  S  I  A  T  P  L  Q  I  Q  V  N  G  H  H  S  R  S  E  V  K  V  L  L  N  D  L  Q  N  F  P  V  R  D  L  S  S  A  I  G  V  N  E  Y  R  Q  W  L  R  H  T  D  G  I  R  Y  L  H  D  A  S  T  S  K  S  T  S  Y  D  T  L  C  S  L  P  Y  N  V  C  T  T  P  V  D  L  G  W  V  F  A  R  E  S  T  T  T  M  S  T  P  T  T  I  S  V  D  D  D  F  T  T  S  E  T  S  I  T  M  R  S  T  N  N  E  S  A  R  W  V  K  V  E  N  S  I  L  I  K  V  L  L  W  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99335" stop="98760"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHKQTTKNKNIGKHLLVLGLFPLEGLDNFPCEIGVITSKVTIGSSFQESSIATPLQIQVNGHHSRSEVKVLLNDLQNFPVRDLSSAIGVNEYRQWLRHTDGIRYLHDASTSKSTSYDTLCSLPYNVCTTPVDLGWVFARESTTTMSTPTTISVDDDFTTSETSITMRSTNNESARWVKVENSILIKVLLWDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="101159" e_stop="101146"/>
            <exon e_start="100510" e_stop="100493"/>
            <exon e_start="99494" e_stop="98758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.765" acc_prob="0.687" e_score="0.643"/>
          <exon-intron don_prob="0.305" acc_prob="0.000" e_score="0.444"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.643">
            <gDNA_exon_boundary e_start="101159" e_stop="101146" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.765" acc_prob="0.687">
            <gDNA_intron_boundary i_start="101145" i_stop="100511" i_length="635"/>
          </intron>
          <exon e_serial="2" e_score="0.444">
            <gDNA_exon_boundary e_start="100510" e_stop="100493" e_length="18"/>
          </exon>
          <intron i_serial="2" don_prob="0.305" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100492" i_stop="99495" i_length="998"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="99494" e_stop="98758" e_length="737"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101159" stop="101146"/>
              <exon start="100510" stop="100493"/>
              <exon start="99494" stop="98765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542062" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99492" stop="98758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99486" stop="98869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99483" stop="99008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCGGCCCACAAG : ACTGGTGAGATTTTATTG : TGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACGACCAGTGAGACCAGCATCACCATGAGGTCCACCAATAACGAATCGGCCAGATGGGTTAAGGTGGAAAATAGTATTCTCATCAAGGTACTTCTCTGGGATGACTG</gDNA_template>
            <first_frame> G  R  P  T  R :   L  V  R  F  Y  C :   A  L  I  F  K  Y  I  I  I  F  L  F  L  S  L  I  F  Q  G  L  R  Y  P  S  N  T  M  E  T  G  Q  *  Q  N  K  G  S  K  E  K  I  Q  R  Q  T  S  K  H  G  G  D  S  K  A  T  S  K  Q  Q  R  T  K  T  *  A  S  T  Y  *  S  W  G  F  S  H  L  R  G  L  T  T  S  H  V  K  S  G  S  S  R  P  K  *  P  *  A  A  V  F  K  N  L  L  L  P  P  L  F  K  S  K  L  M  D  I  I  P  G  L  K  S  K  F  S  L  T  I  F  K  I  S  L  S  G  I  F  P  V  P  *  V  S  T  N  T  D  N  G  S  G  T  P  M  A  *  D  T  C  T  M  H  L  R  A  S  P  L  A  T  I  L  F  A  A  C  L  T  M  Y  A  P  L  L  S  T  L  V  G  S  L  P  E  K  A  P  P  P  *  A  P  Q  P  P  *  V  S  M  M  I  L  R  P  V  R  P  A  S  P  *  G  P  P  I  T  N  R  P  D  G  L  R  W  K  I  V  F  S  S  R  Y  F  S  G  M  T  </first_frame>
            <second_frame>  V  G  P  Q   : D  W  *  D  F  I   : V  H  *  F  S  S  I  *  *  Y  F  F  F  F  P  *  Y  S  K  A  *  D  I  H  P  T  Q  W  K  Q  D  N  N  K  I  K  G  Q  K  R  K  Y  K  D  K  Q  A  N  T  G  E  I  L  K  P  Q  A  N  N  K  E  Q  K  H  R  Q  A  L  I  S  L  G  A  F  P  T  *  G  A  *  Q  L  P  M  *  N  R  G  H  H  V  Q  S  D  H  R  Q  Q  F  S  R  I  F  Y  C  H  P  S  S  N  P  S  *  W  T  S  F  Q  V  *  S  Q  S  S  P  *  R  S  S  K  F  P  C  Q  G  S  F  Q  C  H  R  C  Q  R  I  Q  T  M  A  Q  A  H  R  W  H  K  I  P  A  R  C  I  Y  E  Q  V  H  *  L  R  Y  S  L  Q  P  A  L  Q  C  M  H  H  S  C  R  P  W  L  G  L  C  P  R  K  H  H  H  H  E  H  P  N  H  H  K  C  R  *  *  F  Y  D  Q  *  D  Q  H  H  H  E  V  H  Q  *  R  I  G  Q  M  G  *  G  G  K  *  Y  S  H  Q  G  T  S  L  G  *  L </second_frame>
            <third_frame>   S  A  H  K  :  T  G  E  I  L  L  :  C  T  N  F  Q  V  Y  N  N  I  S  F  S  F  L  N  I  P  R  P  K  I  S  I  Q  H  N  G  N  R  T  I  T  K  *  R  V  K  R  E  N  T  K  T  N  K  Q  T  R  G  R  F  *  S  H  K  Q  T  T  K  N  K  N  I  G  K  H  L  L  V  L  G  L  F  P  L  E  G  L  D  N  F  P  C  E  I  G  V  I  T  S  K  V  T  I  G  S  S  F  Q  E  S  S  I  A  T  P  L  Q  I  Q  V  N  G  H  H  S  R  S  E  V  K  V  L  L  N  D  L  Q  N  F  P  V  R  D  L  S  S  A  I  G  V  N  E  Y  R  Q  W  L  R  H  T  D  G  I  R  Y  L  H  D  A  S  T  S  K  S  T  S  Y  D  T  L  C  S  L  P  Y  N  V  C  T  T  P  V  D  L  G  W  V  F  A  R  E  S  T  T  T  M  S  T  P  T  T  I  S  V  D  D  D  F  T  T  S  E  T  S  I  T  M  R  S  T  N  N  E  S  A  R  W  V  K  V  E  N  S  I  L  I  K  V  L  L  W  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99335" stop="98760"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHKQTTKNKNIGKHLLVLGLFPLEGLDNFPCEIGVITSKVTIGSSFQESSIATPLQIQVNGHHSRSEVKVLLNDLQNFPVRDLSSAIGVNEYRQWLRHTDGIRYLHDASTSKSTSYDTLCSLPYNVCTTPVDLGWVFARESTTTMSTPTTISVDDDFTTSETSITMRSTNNESARWVKVENSILIKVLLWDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="99565" e_stop="99555"/>
            <exon e_start="99489" e_stop="98862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.664" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.636">
            <gDNA_exon_boundary e_start="99565" e_stop="99555" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.664" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99554" i_stop="99490" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="99489" e_stop="98862" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99565" stop="99555"/>
              <exon start="99489" stop="98862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99486" stop="98869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99483" stop="99008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTCCTA : TAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCACTCCTGTCGACCTTGGTTGGGTCTTTGCCCGAGAAAGCACCACCACCATGAGCACCCCAACCACCATAAGTGTCGATGATGATTTTACG</gDNA_template>
            <first_frame> L  F  S  Y :   N  F  Q  V  Y  N  N  I  S  F  S  F  L  N  I  P  R  P  K  I  S  I  Q  H  N  G  N  R  T  I  T  K  *  R  V  K  R  E  N  T  K  T  N  K  Q  T  R  G  R  F  *  S  H  K  Q  T  T  K  N  K  N  I  G  K  H  L  L  V  L  G  L  F  P  L  E  G  L  D  N  F  P  C  E  I  G  V  I  T  S  K  V  T  I  G  S  S  F  Q  E  S  S  I  A  T  P  L  Q  I  Q  V  N  G  H  H  S  R  S  E  V  K  V  L  L  N  D  L  Q  N  F  P  V  R  D  L  S  S  A  I  G  V  N  E  Y  R  Q  W  L  R  H  T  D  G  I  R  Y  L  H  D  A  S  T  S  K  S  T  S  Y  D  T  L  C  S  L  P  Y  N  V  C  T  T  P  V  D  L  G  W  V  F  A  R  E  S  T  T  T  M  S  T  P  T  T  I  S  V  D  D  D  F  T </first_frame>
            <second_frame>  C  F  P   : I  I  F  K  Y  I  I  I  F  L  F  L  S  L  I  F  Q  G  L  R  Y  P  S  N  T  M  E  T  G  Q  *  Q  N  K  G  S  K  E  K  I  Q  R  Q  T  S  K  H  G  G  D  S  K  A  T  S  K  Q  Q  R  T  K  T  *  A  S  T  Y  *  S  W  G  F  S  H  L  R  G  L  T  T  S  H  V  K  S  G  S  S  R  P  K  *  P  *  A  A  V  F  K  N  L  L  L  P  P  L  F  K  S  K  L  M  D  I  I  P  G  L  K  S  K  F  S  L  T  I  F  K  I  S  L  S  G  I  F  P  V  P  *  V  S  T  N  T  D  N  G  S  G  T  P  M  A  *  D  T  C  T  M  H  L  R  A  S  P  L  A  T  I  L  F  A  A  C  L  T  M  Y  A  P  L  L  S  T  L  V  G  S  L  P  E  K  A  P  P  P  *  A  P  Q  P  P  *  V  S  M  M  I  L   </second_frame>
            <third_frame>   V  F  L  :  *  F  S  S  I  *  *  Y  F  F  F  F  P  *  Y  S  K  A  *  D  I  H  P  T  Q  W  K  Q  D  N  N  K  I  K  G  Q  K  R  K  Y  K  D  K  Q  A  N  T  G  E  I  L  K  P  Q  A  N  N  K  E  Q  K  H  R  Q  A  L  I  S  L  G  A  F  P  T  *  G  A  *  Q  L  P  M  *  N  R  G  H  H  V  Q  S  D  H  R  Q  Q  F  S  R  I  F  Y  C  H  P  S  S  N  P  S  *  W  T  S  F  Q  V  *  S  Q  S  S  P  *  R  S  S  K  F  P  C  Q  G  S  F  Q  C  H  R  C  Q  R  I  Q  T  M  A  Q  A  H  R  W  H  K  I  P  A  R  C  I  Y  E  Q  V  H  *  L  R  Y  S  L  Q  P  A  L  Q  C  M  H  H  S  C  R  P  W  L  G  L  C  P  R  K  H  H  H  H  E  H  P  N  H  H  K  C  R  *  *  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99335" stop="98862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHKQTTKNKNIGKHLLVLGLFPLEGLDNFPCEIGVITSKVTIGSSFQESSIATPLQIQVNGHHSRSEVKVLLNDLQNFPVRDLSSAIGVNEYRQWLRHTDGIRYLHDASTSKSTSYDTLCSLPYNVCTTPVDLGWVFARESTTTMSTPTTISVDDDFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="106317" PGL_stop="105677"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106317" e_stop="106302"/>
            <exon e_start="106223" e_stop="105942"/>
            <exon e_start="105791" e_stop="105677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.668" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106317" e_stop="106302" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.668" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106301" i_stop="106224" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106223" e_stop="105942" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.931">
            <gDNA_intron_boundary i_start="105941" i_stop="105792" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105791" e_stop="105677" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106317" stop="106302"/>
              <exon start="106223" stop="105942"/>
              <exon start="105791" stop="105677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACTTCCTCCAGGAG : GTTACGTCGAAAAAGGATCAAGCACAGTATTGGCATGAAACTAAAGAAACATATAAATTTCTGTCAGTTGATACATTATCAAGAAAGTTTAAGGAATCTCCATACAGGAAAAAGCTGAATGATGAACTTTCTGTTGCATATGATAAGTCCAGGTGTCATAAAAATTCTATAACCTTTCGTGACTATTCACTTCCTAAATGGGAACTCTTTCGAGCTTGTATGTCAAGAGAATTCCTTCTGATGAAAAGGAATTCTTTTATCTACATATTCAAAACTGTTCAG : CTTGTCATCATTGCATTCATAACTATGACCGTATTTTTGAGAACTCGGATGCATACTGATCTTGTACATGCAAATTATTATTTGGGAGCTCTGTTTTTTGCTCTCATCATTCTTC</gDNA_template>
            <first_frame> *  L  P  P  G   : G  Y  V  E  K  G  S  S  T  V  L  A  *  N  *  R  N  I  *  I  S  V  S  *  Y  I  I  K  K  V  *  G  I  S  I  Q  E  K  A  E  *  *  T  F  C  C  I  *  *  V  Q  V  S  *  K  F  Y  N  L  S  *  L  F  T  S  *  M  G  T  L  S  S  L  Y  V  K  R  I  P  S  D  E  K  E  F  F  Y  L  H  I  Q  N  C  S   : A  C  H  H  C  I  H  N  Y  D  R  I  F  E  N  S  D  A  Y  *  S  C  T  C  K  L  L  F  G  S  S  V  F  C  S  H  H  S   </first_frame>
            <second_frame>  D  F  L  Q  E  :  V  T  S  K  K  D  Q  A  Q  Y  W  H  E  T  K  E  T  Y  K  F  L  S  V  D  T  L  S  R  K  F  K  E  S  P  Y  R  K  K  L  N  D  E  L  S  V  A  Y  D  K  S  R  C  H  K  N  S  I  T  F  R  D  Y  S  L  P  K  W  E  L  F  R  A  C  M  S  R  E  F  L  L  M  K  R  N  S  F  I  Y  I  F  K  T  V  Q  :  L  V  I  I  A  F  I  T  M  T  V  F  L  R  T  R  M  H  T  D  L  V  H  A  N  Y  Y  L  G  A  L  F  F  A  L  I  I  L  </second_frame>
            <third_frame>   T  S  S  R  R :   L  R  R  K  R  I  K  H  S  I  G  M  K  L  K  K  H  I  N  F  C  Q  L  I  H  Y  Q  E  S  L  R  N  L  H  T  G  K  S  *  M  M  N  F  L  L  H  M  I  S  P  G  V  I  K  I  L  *  P  F  V  T  I  H  F  L  N  G  N  S  F  E  L  V  C  Q  E  N  S  F  *  *  K  G  I  L  L  S  T  Y  S  K  L  F  S :   L  S  S  L  H  S  *  L  *  P  Y  F  *  E  L  G  C  I  L  I  L  Y  M  Q  I  I  I  W  E  L  C  F  L  L  S  S  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106316" stop="106302"/>
                    <exon start="106223" stop="105942"/>
                    <exon start="105791" stop="105678"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFLQEVTSKKDQAQYWHETKETYKFLSVDTLSRKFKESPYRKKLNDELSVAYDKSRCHKNSITFRDYSLPKWELFRACMSREFLLMKRNSFIYIFKTVQLVIIAFITMTVFLRTRMHTDLVHANYYLGALFFALIIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="110210" PGL_stop="107322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110210" e_stop="109834"/>
            <exon e_start="109613" e_stop="109490"/>
            <exon e_start="109006" e_stop="108921"/>
            <exon e_start="108022" e_stop="107938"/>
            <exon e_start="107436" e_stop="107322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.413" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.284" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110210" e_stop="109834" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.413">
            <gDNA_intron_boundary i_start="109833" i_stop="109614" i_length="220"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109613" e_stop="109490" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="109489" i_stop="109007" i_length="483"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109006" e_stop="108921" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.993">
            <gDNA_intron_boundary i_start="108920" i_stop="108023" i_length="898"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108022" e_stop="107938" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.936" acc_prob="0.284">
            <gDNA_intron_boundary i_start="107937" i_stop="107437" i_length="501"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="107436" e_stop="107322" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110210" stop="109834"/>
              <exon start="109613" stop="109490"/>
              <exon start="109006" stop="108921"/>
              <exon start="108022" stop="107938"/>
              <exon start="107436" stop="107322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110210" stop="109834"/>
              <exon start="109613" stop="109490"/>
              <exon start="109006" stop="108921"/>
              <exon start="108022" stop="108004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAA : AGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATG : AACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGGCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAACCCGGACG : TATGACTCTACTGCTTGGACCTCCTGGGTGTGGAAAAACAACACTGCTGAAAGCACTTTCAGGAAATCTGGACAATTCTCTTAAG : GTTTCTGGGGAGATTTCTTATAACGGCTATAAATTGGAGGAGTTTGTACCACAGAAAACTTCTGCATATATAAGCCAAAATGACCTACACATCCCTGAAATGACTGTTAGAGAAA</gDNA_template>
            <first_frame> L  V  S  S  D  D  I  E  S  I  R  M  D  L  S  E  I  G  R  S  F  R  S  S  F  R  R  Q  T  S  I  L  R  S  N  S  A  L  S  A  S  E  K  D  D  V  V  D  E  E  N  M  L  A  W  A  A  I  E  R  L  P  T  Y  D  R  L  R  S  S  V  F  E  E  V  N  G  N  E  A  N  V  K  T  K  R  V  T  D  V  T  K  L  G  A  V  E  R  H  V  F  I  E  K  M  I  K  H  I  E  H  D  N  L  Q  L  L  H  K  I  R  K  R  I  D  K :   V  G  V  K  L  P  T  V  E  V  R  Y  K  N  L  T  I  E  A  E  C  E  L  V  H  G  K  P  L  P  T  L  W  N  S  L  K  S  T  I  M  :  N  L  A  R  L  P  G  L  Q  S  E  M  A  K  I  N  I  I  N  D  V  S  G  V  I  K  P  G  R :   M  T  L  L  L  G  P  P  G  C  G  K  T  T  L  L  K  A  L  S  G  N  L  D  N  S  L  K  :  V  S  G  E  I  S  Y  N  G  Y  K  L  E  E  F  V  P  Q  K  T  S  A  Y  I  S  Q  N  D  L  H  I  P  E  M  T  V  R  E  </first_frame>
            <second_frame>  L  L  V  R  T  I  *  S  R  L  E  W  I  S  Q  R  L  E  E  A  L  D  H  H  L  G  A  R  L  R  F  *  G  V  I  Q  L  *  V  L  L  K  R  T  T  L  W  M  R  R  T  C  W  L  G  Q  Q  L  R  D  C  Q  R  M  T  G  *  D  H  L  Y  L  R  K  S  M  A  M  R  P  M  L  R  R  K  E  *  L  M  L  P  S  L  E  L  *  K  G  M  F  S  L  K  R  *  L  N  T  L  N  M  T  T  F  N  C  C  T  K  S  E  R  E  L  T   : K  L  V  *  N  C  L  L  W  K  *  D  T  K  I  *  P  L  K  Q  N  V  S  *  F  M  E  S  L  S  L  L  F  G  I  L  S  K  A  Q  *  * :   T  L  P  G  F  Q  A  Y  S  Q  K  W  P  R  *  I  S  L  M  M  S  A  V  *  *  N  P  D   : V  *  L  Y  C  L  D  L  L  G  V  E  K  Q  H  C  *  K  H  F  Q  E  I  W  T  I  L  L  R :   F  L  G  R  F  L  I  T  A  I  N  W  R  S  L  Y  H  R  K  L  L  H  I  *  A  K  M  T  Y  T  S  L  K  *  L  L  E  K </second_frame>
            <third_frame>   C  *  F  G  R  Y  R  V  D  *  N  G  S  L  R  D  W  K  K  L  *  I  I  I  *  A  P  D  F  D  F  E  E  *  F  S  F  E  C  F  *  K  G  R  R  C  G  *  G  E  H  V  G  L  G  S  N  *  E  T  A  N  V  *  Q  V  E  I  I  C  I  *  G  S  Q  W  Q  *  G  Q  C  *  D  E  K  S  N  *  C  Y  Q  A  W  S  C  R  K  A  C  F  H  *  K  D  D  *  T  H  *  T  *  Q  P  S  I  V  A  Q  N  Q  K  E  N  *  Q  :  S  W  C  K  I  A  Y  C  G  S  E  I  Q  K  F  N  H  *  S  R  M  *  A  S  S  W  K  A  S  P  Y  S  L  E  F  S  Q  K  H  N  N   : E  P  C  Q  A  S  R  P  T  V  R  N  G  Q  D  K  Y  H  *  *  C  Q  R  C  N  K  T  R  T  :  Y  D  S  T  A  W  T  S  W  V  W  K  N  N  T  A  E  S  T  F  R  K  S  G  Q  F  S  *   : G  F  W  G  D  F  L  *  R  L  *  I  G  G  V  C  T  T  E  N  F  C  I  Y  K  P  K  *  P  T  H  P  *  N  D  C  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110210" stop="109834"/>
                    <exon start="109613" stop="109490"/>
                    <exon start="109006" stop="108921"/>
                    <exon start="108022" stop="107938"/>
                    <exon start="107436" stop="107323"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSSDDIESIRMDLSEIGRSFRSSFRRQTSILRSNSALSASEKDDVVDEENMLAWAAIERLPTYDRLRSSVFEEVNGNEANVKTKRVTDVTKLGAVERHVFIEKMIKHIEHDNLQLLHKIRKRIDKVGVKLPTVEVRYKNLTIEAECELVHGKPLPTLWNSLKSTIMNLARLPGLQSEMAKINIINDVSGVIKPGRMTLLLGPPGCGKTTLLKALSGNLDNSLKVSGEISYNGYKLEEFVPQKTSAYISQNDLHIPEMTVRE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="114639" PGL_stop="116072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114639" e_stop="114866"/>
            <exon e_start="115535" e_stop="115649"/>
            <exon e_start="115724" e_stop="116072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.974"/>
          <exon-intron don_prob="0.992" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="114639" e_stop="114866" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="114867" i_stop="115534" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115535" e_stop="115649" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.937">
            <gDNA_intron_boundary i_start="115650" i_stop="115723" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="115724" e_stop="116072" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114639" stop="114866"/>
              <exon start="115535" stop="115649"/>
              <exon start="115724" stop="116072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTTTGTCCGCCATTTTCGTCTAATATTCTTGAAAG : ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT : TGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAATGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</gDNA_template>
            <first_frame> L  L  N  F  E  N  Q  N  L  C  S  P  S  V  S  L  R  L  I  C  P  P  F  L  S  T  L  S  A  F  E  N  Q  N  C  A  L  R  P  S  V  F  V  *  S  V  R  H  F  C  L  L  C  P  P  *  K  I  K  S  P  I  S  S  T  L  S  A  I  F  V  *  Y  S  *  K  :  I  G  Q  H  W  M  H  I  K  T  R  K  L  E  N  F  W  V  H  N  I  R  L  M  W  S  L  L  K  T  T  C  N  K  *  V  I  A   : L  I  A  D  Y  S  *  L  Y  M  Q  N  S  E  *  Q  N  Q  H  V  M  *  *  F  *  E  *  L  S  S  Q  K  I  C  D  S  F  I  E  V  W  S  R  Q  D  E  C  W  I  C  *  Q  Q  *  *  P  F  K  N  E  E  C  I  K  P  I  I  *  R  *  N  C  *  C  R  L  V  S  F  Q  C  L  I  F  F  C  F  L  E  L  N  K  M  F  E  V  F  I  N  I  T  T  H  I  V  K  L  *  K  C  F  D  F  *  N  Y   </first_frame>
            <second_frame>  F  S  I  L  K  I  K  I  C  A  L  H  P  S  A  F  V  *  S  V  R  H  F  C  L  L  C  Q  P  L  K  I  K  I  V  L  S  V  R  P  S  S  S  N  L  S  A  I  F  V  Y  S  V  R  L  K  K  S  N  R  Q  F  R  L  L  C  P  P  F  S  S  N  I  L  E  R :   L  G  S  I  G  C  I  *  R  Q  E  N  W  R  T  F  G  S  T  T  F  V  *  C  G  V  C  S  R  Q  H  A  T  N  K  *  *  P  :  *  L  R  T  I  R  S  C  I  C  R  I  L  N  D  K  I  N  M  S  C  N  S  F  K  S  S  Y  L  R  K  R  Y  A  I  L  L  L  K  Y  G  L  D  K  M  N  A  G  Y  V  S  N  S  D  D  P  S  R  M  K  N  V  L  N  P  S  S  E  D  E  I  V  N  V  G  *  L  V  F  N  V  *  F  F  F  V  F  W  S  *  T  R  C  L  K  Y  L  L  T  *  Q  H  I  L  L  N  Y  E  S  V  L  I  F  K  I  I  </second_frame>
            <third_frame>   S  Q  F  *  K  S  K  F  V  L  S  I  R  Q  P  S  S  N  L  S  A  I  F  V  Y  F  V  S  L  *  K  S  K  L  C  S  P  S  V  R  L  R  L  I  C  P  P  F  L  S  T  L  S  A  L  K  N  Q  I  A  N  F  V  Y  F  V  R  H  F  R  L  I  F  L  K   : D  W  A  A  L  D  A  Y  K  D  K  K  T  G  E  L  L  G  P  Q  H  S  F  N  V  E  F  A  Q  D  N  M  Q  Q  I  S  D  S  L :   D  C  G  L  F  V  V  V  Y  A  E  F  *  M  T  K  S  T  C  H  V  I  V  L  R  V  A  I  F  A  K  D  M  R  F  F  Y  *  S  M  V  S  T  R  *  M  L  D  M  L  A  T  V  M  T  L  Q  E  *  R  M  Y  *  T  H  H  L  K  M  K  L  L  M  *  A  S  *  F  S  M  F  D  F  F  L  F  F  G  V  K  Q  D  V  *  S  I  Y  *  H  N  N  T  Y  C  *  I  M  K  V  F  *  F  L  K  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114731" stop="114866"/>
                    <exon start="115535" stop="115649"/>
                    <exon start="115724" stop="115763"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKLCSPSVRLRLICPPFLSTLSALKNQIANFVYFVRHFRLIFLKDWAALDAYKDKKTGELLGPQHSFNVEFAQDNMQQISDSLDCGLFVVVYAEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115727" stop="115951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTIRSCICRILNDKINMSCNSFKSSYLRKRYAILLLKYGLDKMNAGYVSNSDDPSRMKNVLNPSSEDEIVNVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="118392" PGL_stop="124729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118392" e_stop="118481"/>
            <exon e_start="119236" e_stop="119295"/>
            <exon e_start="119396" e_stop="119649"/>
            <exon e_start="120170" e_stop="120365"/>
            <exon e_start="120619" e_stop="120789"/>
            <exon e_start="120873" e_stop="120989"/>
            <exon e_start="122315" e_stop="122512"/>
            <exon e_start="122590" e_stop="122649"/>
            <exon e_start="122737" e_stop="122835"/>
            <exon e_start="124354" e_stop="124729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.546" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118392" e_stop="118481" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.975">
            <gDNA_intron_boundary i_start="118482" i_stop="119235" i_length="754"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119236" e_stop="119295" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="119296" i_stop="119395" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119396" e_stop="119649" e_length="254"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119650" i_stop="120169" i_length="520"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120170" e_stop="120365" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.989">
            <gDNA_intron_boundary i_start="120366" i_stop="120618" i_length="253"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120619" e_stop="120789" e_length="171"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120790" i_stop="120872" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120873" e_stop="120989" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.546">
            <gDNA_intron_boundary i_start="120990" i_stop="122314" i_length="1325"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="122315" e_stop="122512" e_length="198"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="122590" e_stop="122649" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="122737" e_stop="122835" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="124354" e_stop="124729" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118392" stop="118481"/>
              <exon start="119236" stop="119295"/>
              <exon start="119396" stop="119649"/>
              <exon start="120170" stop="120365"/>
              <exon start="120619" stop="120789"/>
              <exon start="120873" stop="120989"/>
              <exon start="122315" stop="122512"/>
              <exon start="122590" stop="122649"/>
              <exon start="122737" stop="122835"/>
              <exon start="124354" stop="124699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118409" stop="118481"/>
              <exon start="119236" stop="119295"/>
              <exon start="119396" stop="119649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118426" stop="118481"/>
              <exon start="119236" stop="119295"/>
              <exon start="119396" stop="119450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118427" stop="118481"/>
              <exon start="119236" stop="119295"/>
              <exon start="119396" stop="119649"/>
              <exon start="120170" stop="120365"/>
              <exon start="120619" stop="120647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120953" stop="120989"/>
              <exon start="122315" stop="122512"/>
              <exon start="122590" stop="122649"/>
              <exon start="122737" stop="122835"/>
              <exon start="124354" stop="124729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122419" stop="122512"/>
              <exon start="122590" stop="122649"/>
              <exon start="122737" stop="122835"/>
              <exon start="124354" stop="124717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122504" stop="122512"/>
              <exon start="122590" stop="122649"/>
              <exon start="122737" stop="122835"/>
              <exon start="124354" stop="124645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266955" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122506" stop="122512"/>
              <exon start="122590" stop="122649"/>
              <exon start="122737" stop="122835"/>
              <exon start="124354" stop="124645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266953" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCCTGAGAACGCGGGTTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAAC : GATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAG : TTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAG : AGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAG : CAACTAGTCATATATGAGACATCAGCTTCCGAGTTGGATATTATTCGAGATATTTCTCGCACATTTCCTTCACATGTTTTCTTTCAGCAGAGACATGGACCTGGTCAAAGGTCTCTTTACAATGTTCTGAAAGCATATTCTGTCTTTGACCGAGATGTTGGATACGTACAG : GGCATGGGATTTGTGGCAGGTCTGCTTCTTCTTTACATGAGTGAAGAGGATGCATTTTGGTTACTGGTTGCATTGTTGAAGGGAGCCGTTCACACTCCTATGGAAGGAATGTACTTG : GTAGGATTGCCTCTAGTCCAGCAATATCTCTTTCAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAG : GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTG : GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAG : GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTTTACACGCGTTTA</gDNA_template>
            <first_frame> H  P  E  N  A  G  S  P  V  M  P  K  N  T  E  G  R  M  L  A  H  A  S  Y  V  V  V  N  Q  N  :  D  E  T  L  W  K  *  S  H  K  D  H  W  C  *  *  S  I  F  Q  :  F  R  V  *  E  I  L  Y  Y  W  S  M  Q  L  G  M  H  G  N  L  V  A  V  V  *  C  S  I  G  V  *  S  W  G  C  S  R  L  A  M  E  S  K  V  V  D  E  N  E  E  G  P  V  V  P  M  R  V  D  R  F  G  F  V  K  Q  E  H  G  P  T  E  G  L  A  R  S  R  S  A  F  E  Y  Q  R :   D  E  R  R  I  R  K  W  R  K  M  I  G  V  G  G  S  D  W  K  Q  Y  V  R  R  K  P  H  V  V  K  R  R  I  R  K  G  I  P  D  C  L  R  G  L  L  W  Q  L  I  S  G  S  R  D  L  L  L  L  N  P  G  V  Y  E  :  Q  L  V  I  Y  E  T  S  A  S  E  L  D  I  I  R  D  I  S  R  T  F  P  S  H  V  F  F  Q  Q  R  H  G  P  G  Q  R  S  L  Y  N  V  L  K  A  Y  S  V  F  D  R  D  V  G  Y  V  Q  :  G  M  G  F  V  A  G  L  L  L  L  Y  M  S  E  E  D  A  F  W  L  L  V  A  L  L  K  G  A  V  H  T  P  M  E  G  M  Y  L  :  V  G  L  P  L  V  Q  Q  Y  L  F  Q  F  D  H  L  V  K  E  H  M  P  K  L  G  E  H  F  A  Q  E  M  I  N  P  S  M  Y  A  S  Q  W  F  I  T  V  F  S  Y  S  F  P  F  H  L  A  L  R  I  W  D  V  F  L  F  E  :  G  V  K  V  V  F  K  V  G  L  A  L  L  K  Y  C  H  D  D  L  :  V  K  L  P  F  E  K  L  I  H  A  L  R  N  F  P  E  D  A  M  N  P  D  I  L  L  P  M  A  F  S  I  K  :  V  S  K  S  L  V  E  L  K  Q  E  Y  E  Q  Q  R  L  K  P  P  E  S  P  V  K  Q  *  D  V  S  N  A  K  Y  F  W  R  N  N  Q  Q  L  L  C  T  N  L  D  S  L  V  L  C  L  K  N  C  L  S  *  C  T  *  S  H  *  S  D  Y  P  I  H  T  V  L  V  Q  N  S  L  L  F  E  G  E  G  T  S  V  F  A  M  R  V  N  C  T  S  P  T  S  L  L  M  *  K  C  Y  V  H  F  S  L  C  K  G  S  F  L  I  S  L  H  A  F  </first_frame>
            <second_frame>  T  L  R  T  R  V  H  Q  *  C  P  K  T  R  R  G  E  C  S  H  T  P  A  M  L  L  L  T  K  T :   M  R  H  C  G  N  N  P  T  K  I  I  G  V  S  E  V  F  F  S :   S  G  F  R  R  F  C  I  T  G  P  C  S  W  E  C  T  E  I  L  W  Q  *  F  N  V  L  L  E  C  S  L  G  V  V  L  G  *  Q  W  K  V  K  *  *  T  K  M  R  K  V  R  L  F  P  C  E  L  I  D  L  V  L  *  S  R  N  M  V  L  L  K  V  *  Q  G  A  G  R  P  L  N  I  R   : E  M  K  E  G  L  G  N  G  E  K  *  *  V  L  E  E  V  I  G  S  S  M  L  G  G  N  H  M  L  L  N  E  E  Y  G  K  E  F  L  I  V  *  G  G  F  S  G  S  *  F  L  E  V  E  T  S  C  C  *  I  L  E  F  M  S :   N  *  S  Y  M  R  H  Q  L  P  S  W  I  L  F  E  I  F  L  A  H  F  L  H  M  F  S  F  S  R  D  M  D  L  V  K  G  L  F  T  M  F  *  K  H  I  L  S  L  T  E  M  L  D  T  Y  R :   A  W  D  L  W  Q  V  C  F  F  F  T  *  V  K  R  M  H  F  G  Y  W  L  H  C  *  R  E  P  F  T  L  L  W  K  E  C  T  W :   *  D  C  L  *  S  S  N  I  S  F  N  L  I  I  W  *  K  S  T  C  R  S  W  V  N  I  L  L  R  K  *  *  I  P  A  C  M  P  V  S  G  S  *  Q  F  S  R  T  L  S  R  F  T  W  L  S  E  F  G  M  S  F  F  L  R :   V  *  K  *  S  S  K  L  A  W  L  Y  *  N  I  A  M  M  I  W :   *  S  C  H  L  R  N  S  Y  M  L  C  A  T  S  L  R  M  P  *  I  Q  I  Y  F  Y  Q  W  L  F  Q  S  R :   F  P  R  V  W  W  N  *  S  R  N  M  N  S  N  D  *  N  L  L  N  P  Q  S  N  S  K  M  Y  Q  M  Q  N  T  S  G  E  T  I  N  S  F  C  A  Q  T  W  I  L  *  F  S  V  *  K  T  V  S  A  D  V  H  N  H  I  D  Q  I  T  R  S  I  Q  F  *  Y  K  I  V  Y  Y  L  K  E  K  A  P  Q  S  L  P  *  G  S  I  V  Q  V  Q  L  V  F  L  C  K  N  V  M  C  I  S  L  F  V  K  V  V  F  *  S  V  Y  T  R  L </second_frame>
            <third_frame>   P  *  E  R  G  F  T  S  D  A  Q  K  H  G  G  E  N  A  R  T  R  Q  L  C  C  C  *  P  K   : R  *  D  T  V  E  I  I  P  Q  R  S  L  V  L  V  K  Y  F  S   : V  Q  G  L  G  D  S  V  L  L  V  H  A  V  G  N  A  R  K  S  C  G  S  S  L  M  F  Y  W  S  V  V  L  G  L  F  *  V  S  N  G  K  *  S  S  R  R  K  *  G  R  S  G  C  S  H  A  S  *  *  I  W  F  C  E  A  G  T  W  S  Y  *  R  F  S  K  E  P  V  G  L  *  I  S  E  :  R  *  K  K  D  *  E  M  E  K  N  D  R  C  W  R  K  *  L  E  A  V  C  *  E  E  T  T  C  C  *  T  K  N  T  E  R  N  S  *  L  S  E  G  A  S  L  A  A  N  F  W  K  S  R  P  L  V  V  K  S  W  S  L  *   : A  T  S  H  I  *  D  I  S  F  R  V  G  Y  Y  S  R  Y  F  S  H  I  S  F  T  C  F  L  S  A  E  T  W  T  W  S  K  V  S  L  Q  C  S  E  S  I  F  C  L  *  P  R  C  W  I  R  T   : G  H  G  I  C  G  R  S  A  S  S  L  H  E  *  R  G  C  I  L  V  T  G  C  I  V  E  G  S  R  S  H  S  Y  G  R  N  V  L   : G  R  I  A  S  S  P  A  I  S  L  S  I  *  S  F  G  E  R  A  H  A  E  V  G  *  T  F  C  S  G  N  D  K  S  Q  H  V  C  Q  S  V  V  H  N  S  F  L  V  L  F  P  V  S  L  G  S  Q  N  L  G  C  L  S  F  *   : G  C  K  S  S  L  Q  S  W  L  G  S  T  E  I  L  P  *  *  S   : G  K  V  A  I  *  E  T  H  T  C  F  A  Q  L  P  *  G  C  H  E  S  R  Y  T  F  T  N  G  F  F  N  Q   : G  F  Q  E  F  G  G  T  E  A  G  I  *  T  A  T  T  E  T  S  *  I  P  S  Q  T  V  R  C  I  K  C  K  I  L  L  E  K  Q  S  T  A  F  V  H  K  L  G  F  F  S  S  L  F  K  K  L  S  Q  L  M  Y  I  I  T  L  I  R  L  P  D  P  Y  S  F  S  T  K  *  F  I  I  *  R  R  R  H  L  S  L  C  H  E  G  Q  L  Y  K  S  N  *  S  S  Y  V  K  M  L  C  A  F  L  S  L  *  R  *  F  S  D  Q  F  T  R  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119489" stop="119649"/>
                    <exon start="120170" stop="120365"/>
                    <exon start="120619" stop="120789"/>
                    <exon start="120873" stop="120989"/>
                    <exon start="122315" stop="122512"/>
                    <exon start="122590" stop="122649"/>
                    <exon start="122737" stop="122835"/>
                    <exon start="124354" stop="124434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWGCSRLAMESKVVDENEEGPVVPMRVDRFGFVKQEHGPTEGLARSRSAFEYQRDERRIRKWRKMIGVGGSDWKQYVRRKPHVVKRRIRKGIPDCLRGLLWQLISGSRDLLLLNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRDVGYVQGMGFVAGLLLLYMSEEDAFWLLVALLKGAVHTPMEGMYLVGLPLVQQYLFQFDHLVKEHMPKLGEHFAQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKVVFKVGLALLKYCHDDLVKLPFEKLIHALRNFPEDAMNPDILLPMAFSIKVSKSLVELKQEYEQQRLKPPESPVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="129402" PGL_stop="125801"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129402" e_stop="129116"/>
            <exon e_start="129024" e_stop="128920"/>
            <exon e_start="128751" e_stop="128629"/>
            <exon e_start="128552" e_stop="128382"/>
            <exon e_start="128204" e_stop="128075"/>
            <exon e_start="127112" e_stop="126900"/>
            <exon e_start="126343" e_stop="125801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="0.992"/>
          <exon-intron don_prob="0.857" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="129402" e_stop="129116" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="129115" i_stop="129025" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129024" e_stop="128920" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.996">
            <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128751" e_stop="128629" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128552" e_stop="128382" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128204" e_stop="128075" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="128074" i_stop="127113" i_length="962"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="127112" e_stop="126900" e_length="213"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.996">
            <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="126343" e_stop="125801" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129402" stop="129144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129322" stop="129116"/>
              <exon start="129024" stop="128920"/>
              <exon start="128751" stop="128629"/>
              <exon start="128552" stop="128540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129187" stop="129116"/>
              <exon start="129024" stop="128920"/>
              <exon start="128751" stop="128629"/>
              <exon start="128552" stop="128382"/>
              <exon start="128204" stop="128136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129186" stop="129116"/>
              <exon start="129024" stop="128920"/>
              <exon start="128751" stop="128629"/>
              <exon start="128552" stop="128463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128988" stop="128920"/>
              <exon start="128751" stop="128629"/>
              <exon start="128552" stop="128382"/>
              <exon start="128204" stop="128075"/>
              <exon start="127112" stop="127035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128988" stop="128920"/>
              <exon start="128751" stop="128629"/>
              <exon start="128552" stop="128382"/>
              <exon start="128204" stop="128075"/>
              <exon start="127112" stop="127036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128988" stop="128920"/>
              <exon start="128751" stop="128629"/>
              <exon start="128552" stop="128382"/>
              <exon start="128204" stop="128075"/>
              <exon start="127112" stop="127036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128519" stop="128382"/>
              <exon start="128204" stop="128075"/>
              <exon start="127112" stop="126925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126996" stop="126900"/>
              <exon start="126343" stop="125803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126984" stop="126900"/>
              <exon start="126343" stop="125807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126984" stop="126900"/>
              <exon start="126343" stop="125807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126983" stop="126900"/>
              <exon start="126343" stop="125865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126952" stop="126900"/>
              <exon start="126343" stop="125806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126952" stop="126900"/>
              <exon start="126343" stop="125808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126951" stop="126900"/>
              <exon start="126343" stop="125935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126928" stop="126900"/>
              <exon start="126343" stop="125801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAGGAAGGTTGTGGATCGCAATCAGGAGAAGAAGGGAGTTCATGCAAAAGTGCAATGTATAAAGCTTATAATTCACATCCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCT : AGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAG : GATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGC : TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG : GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAG : GTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACTAGGCCACCAACAAGAGCTCTCAAAAGAGCCCTTCTGACTGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG : GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAGAAACAAAATATGCA</gDNA_template>
            <first_frame> D  K  E  G  C  G  S  Q  S  G  E  E  G  S  S  C  K  S  A  M  Y  K  A  Y  N  S  H  P  I  T  A  P  S  P  L  T  G  L  P  E  F  S  H  L  G  W  G  H  W  F  T  L  R  D  L  E  L  A  T  G  R  F  S  K  E  N  I  L  G  E  G  G  Y  G  I  V  Y  R  G  N  L  I  N  G  T  P  V  A  I  K  K  L  L  N  N  L :   G  Q  A  E  K  E  F  Q  V  E  V  E  A  I  G  H  V  R  H  K  N  L  V  R  L  L  G  Y  C  I  E  G  T  H  R :   M  L  V  Y  E  Y  V  N  N  G  N  L  E  Q  W  L  H  G  A  M  R  H  H  G  Y  L  T  W  E  A  R  M  K  V  L  L  G  T  A  K  A :   L  A  Y  L  H  E  N  I  E  P  K  V  V  H  R  D  I  K  S  S  N  I  L  I  D  D  D  F  N  A  K  V  S  D  F  G  L  A  K  L  L  G  A  G  K  S  H  I  T  T  R  V  M  G  T  F  G :   Y  V  A  P  E  Y  A  N  T  G  L  L  N  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  S  I  T  G  R  D  P  V  D  Y  G  R  P  A  Q  E  :  V  N  L  V  D  W  L  K  M  M  V  G  S  R  R  S  E  E  V  V  D  P  N  I  E  T  R  P  P  T  R  A  L  K  R  A  L  L  T  A  L  R  C  V  D  P  D  S  D  K  R  P  K  M  S  Q  V  V  R  M  L  E  S  E  E  Y  P  I  P  R  E  :  D  R  R  Q  R  R  S  Q  A  G  N  G  E  S  D  S  Q  N  Y  D  T  D  K  S  D  N  P  D  P  R  S  E  S  R  R  S  H  Q  V  *  P  S  K  T  H  L  S  G  L  S  *  E  V  C  H  N  K  A  F  I  I  M  K  V  Y  G  I  K  *  V  G  R  *  T  V  S  A  G  I  L  L  V  R  R  D  *  L  L  F  F  S  L  Q  G  F  Y  S  F  L  I  S  F  I  C  I  L  F  F  S  S  L  F  W  F  F  P  C  M  K  V  D  R  E  *  I  V  V  D  L  M  V  M  *  L  N  W  K  Q  S  G  A  G  V  C  V  Q  K  N  F  L  L  R  Y  S  T  L  F  K  *  Y  C  N  L  F  S  S  K  V  N  T  M  V  *  I  L  A  E  T  K  Y  A </first_frame>
            <second_frame>  T  R  K  V  V  D  R  N  Q  E  K  K  G  V  H  A  K  V  Q  C  I  K  L  I  I  H  I  Q  *  L  L  L  L  L  *  L  D  Y  L  S  F  L  T  W  V  G  A  T  G  L  H  *  E  I  L  S  L  Q  Q  A  G  F  Q  R  R  I  F  S  V  R  V  D  M  A  L  S  T  G  G  I  *  L  M  E  H  L  *  L  L  R  S  S  S  T  I   : *  A  K  L  R  K  S  S  K  W  R  L  K  P  L  A  T  C  V  T  K  I  W  S  A  F  *  D  T  A  L  K  E  L  T   : G  C  W  F  T  S  M  S  T  M  A  I  W  N  S  G  F  M  E  L  C  D  T  T  G  I  S  L  G  R  L  G  *  R  F  S  L  G  Q  L  K   : L  L  R  I  C  M  R  I  L  S  P  K  L  F  I  E  T  *  N  Q  V  I  Y  *  L  M  M  T  S  M  R  R  S  L  I  L  V  W  P  N  C  L  V  L  V  K  V  I  S  Q  L  E  S  W  V  P  L   : G  M  W  L  L  N  M  Q  I  L  V  S  *  M  K  R  V  M  F  I  A  L  G  *  C  C  *  N  R  S  Q  E  E  I  L  W  T  M  A  V  L  P  K  R :   *  I  L  S  I  G  *  K  *  W  L  E  A  G  A  L  R  K  *  *  I  Q  I  L  K  L  G  H  Q  Q  E  L  S  K  E  P  F  *  L  L  *  D  V  L  I  Q  I  L  T  R  D  Q  R  *  A  K  L  F  V  C  L  N  Q  R  N  I  P  Y  Q  E  R :   I  E  G  N  E  D  L  K  Q  V  T  G  R  V  I  L  K  T  M  T  L  T  R  V  T  T  Q  I  Q  G  L  K  V  E  E  A  I  K  Y  N  H  Q  R  H  I  F  L  V  F  H  E  K  C  A  I  T  K  L  S  L  *  *  K  S  T  G  S  N  E  *  D  D  E  L  F  L  L  V  Y  C  W  S  E  E  I  D  Y  F  S  S  P  F  K  G  S  I  L  S  *  Y  L  L  F  V  S  C  F  F  L  L  Y  F  G  S  F  L  V  *  K  *  I  G  S  K  L  L  W  T  *  W  S  C  N  *  T  G  S  N  Q  G  R  G  F  V  Y  R  R  I  S  C  F  G  I  Q  H  Y  S  S  S  I  V  I  Y  F  L  L  K  *  I  P  W  F  K  F  *  Q  K  Q  N  M   </second_frame>
            <third_frame>   Q  G  R  L  W  I  A  I  R  R  R  R  E  F  M  Q  K  C  N  V  *  S  L  *  F  T  S  N  N  C  S  F  S  S  N  W  I  T  *  V  F  S  L  G  L  G  P  L  V  Y  I  E  R  S  *  A  C  N  R  P  V  F  K  G  E  Y  S  R  *  G  W  I  W  H  C  L  P  G  E  F  D  *  W  N  T  C  S  Y  *  E  A  P  Q  Q  S  :  R  P  S  *  E  R  V  P  S  G  G  *  S  H  W  P  R  A  S  Q  K  F  G  P  P  S  R  I  L  H  *  R  N  S  Q  :  D  A  G  L  R  V  C  Q  Q  W  Q  F  G  T  V  A  S  W  S  Y  A  T  P  R  V  S  H  L  G  G  *  D  E  G  S  P  W  D  S  *  S  :  S  C  V  F  A  *  E  Y  *  A  Q  S  C  S  S  R  H  K  I  K  *  Y  I  D  *  *  *  L  Q  C  E  G  L  *  F  W  S  G  Q  T  A  W  C  W  *  K  S  Y  H  N  S  S  H  G  Y  L  W  :  V  C  G  S  *  I  C  K  Y  W  S  L  E  *  K  E  *  C  L  *  L  W  G  S  V  V  R  I  D  H  R  K  R  S  C  G  L  W  P  S  C  P  R   : G  E  S  C  R  L  V  E  N  D  G  W  K  Q  A  L  *  G  S  S  R  S  K  Y  *  N  *  A  T  N  K  S  S  Q  K  S  P  S  D  C  S  E  M  C  *  S  R  F  *  Q  E  T  K  D  E  P  S  C  S  Y  A  *  I  R  G  I  S  H  T  K  R   : G  S  K  A  T  K  I  S  S  R  *  R  G  E  *  F  S  K  L  *  H  *  Q  E  *  Q  P  R  S  K  V  *  K  *  K  K  P  S  S  I  T  I  K  D  T  S  F  W  S  F  M  R  S  V  P  *  Q  S  F  H  Y  N  E  S  L  R  D  Q  M  S  R  T  M  N  C  F  C  W  Y  I  V  G  Q  K  R  L  T  T  F  L  L  P  S  R  V  L  F  F  L  N  I  F  Y  L  Y  L  V  F  F  F  F  I  L  V  L  S  L  Y  E  S  R  *  G  V  N  C  C  G  L  N  G  H  V  T  K  L  E  A  I  R  G  G  G  L  C  T  E  E  F  L  A  S  V  F  N  I  I  Q  V  V  L  *  F  I  F  F  *  S  E  Y  H  G  L  N  S  S  R  N  K  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129402" stop="129116"/>
                    <exon start="129024" stop="128920"/>
                    <exon start="128751" stop="128629"/>
                    <exon start="128552" stop="128382"/>
                    <exon start="128204" stop="128075"/>
                    <exon start="127112" stop="126900"/>
                    <exon start="126343" stop="126224"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKEGCGSQSGEEGSSCKSAMYKAYNSHPITAPSPLTGLPEFSHLGWGHWFTLRDLELATGRFSKENILGEGGYGIVYRGNLINGTPVAIKKLLNNLGQAEKEFQVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARMKVLLGTAKALAYLHENIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLESITGRDPVDYGRPAQEVNLVDWLKMMVGSRRSEEVVDPNIETRPPTRALKRALLTALRCVDPDSDKRPKMSQVVRMLESEEYPIPREDRRQRRSQAGNGESDSQNYDTDKSDNPDPRSESRRSHQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126176" stop="125979"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFHYNESLRDQMSRTMNCFCWYIVGQKRLTTFLLPSRVLFFLNIFYLYLVFFFFILVLSLYESR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 839 chains have been computed
$ 
$ memory statistics:
$ 1372560 bytes spliced alignments in total
$ 588 spliced alignments have been stored
$ 2334 bytes was the average size of a spliced alignment
$ 47432 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 2258 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 864 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:14:43
-->
