##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C01HBa0130I12-Eskqt/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 155453, name = C01HBa0130I12.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	8567	8932	0.87	-	.	ID=g1
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	8567	8932	0.87	-	.	ID=g1.t1;Parent=g1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	8567	8569	.	-	0	Parent=g1.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	8567	8932	0.87	-	0	ID=g1.t1.cds;Parent=g1.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	8930	8932	.	-	0	Parent=g1.t1
# protein sequence = [MHVYATYHNQQITYYTQIPQVYQGHKDVNIWSPFVYGNNIPIAPYNGPGLSEDQQNGGVWLDFKIDGRVKWKVGSITT
# GHYHLHVTCSAYVPLGDRPGYGGVMVGNNAVKYQLARDCSVSV]
# end gene g1
###
# start gene g2
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	34100	38322	0.34	+	.	ID=g2
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	34100	38322	0.34	+	.	ID=g2.t1;Parent=g2
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	34100	34102	.	+	0	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	34184	34265	0.98	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	34313	34415	1	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	34487	34578	1	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	34693	34775	1	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	34952	35028	1	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	35118	35809	0.39	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	35952	36174	0.91	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	36249	36397	0.97	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	36446	36666	0.97	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	36836	37580	1	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	37704	38061	1	+	.	Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	34100	34183	0.98	+	0	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	34266	34312	1	+	0	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	34416	34486	1	+	1	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	34579	34692	1	+	2	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	34776	34951	1	+	2	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	35029	35117	1	+	0	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	35810	35951	0.38	+	1	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	36175	36248	0.94	+	0	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	36398	36445	0.97	+	1	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	36667	36835	1	+	1	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	37581	37703	1	+	0	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	38062	38322	0.96	+	0	ID=g2.t1.cds;Parent=g2.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	38320	38322	.	+	0	Parent=g2.t1
# protein sequence = [MKLDVNVLRYLSKDDFRVLTAVEMGMRNHEIVPCELIDRIARLKHGGTYKVLKNLLKHKLVHHDSSKYDGFRLTYLGY
# DFLAIKTLVNRGMFNGVGRQIGVGKESDIFEVVKEDGTVLAMKLHRLGRVSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEFAFMKALEEHGFPVPQA
# VDCNRHCVIMSLVPGYPLTYRNGYNSVQVRELQNPDVVFETIIAAVIRLAEHGLIHCDFNEFNIMIDDDEKVTIIDFPQMVSVSHPNAQMYFDRDVEC
# IYKFFAKRYNMSFDENENDSDGLEVDINEVGRPQFSEINKNSGFLDKELAASGFTRKDQDELEKLIEGELENHSDSDDEGTADEEDEEDINNTNVKQL
# ESLDLAKEDVNHQTGDDKHDDNHQVGDENDPEEEEEAESEDDPELEKSLSKQRKKAIQAAHRGKRNFASRNTYKDKGGKSSQNSKVHKQLSGW]
# end gene g2
###
# start gene g3
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	39000	40236	0.43	-	.	ID=g3
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	39000	40236	0.43	-	.	ID=g3.t1;Parent=g3
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	39000	39002	.	-	0	Parent=g3.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	39683	40012	0.92	-	.	Parent=g3.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	40149	40227	0.44	-	.	Parent=g3.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	39000	39682	1	-	2	ID=g3.t1.cds;Parent=g3.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	40013	40148	0.55	-	0	ID=g3.t1.cds;Parent=g3.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	40228	40236	0.44	-	0	ID=g3.t1.cds;Parent=g3.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	40234	40236	.	-	0	Parent=g3.t1
# protein sequence = [MRYRALPIWGVAHSLNKAVNYRTEDDPLMLFVKSCSNLLATVKGYRSFCIYVGDNKVIHFTRRGQEVGTGTILDHILV
# SSIPNRSTVPCTVCTPPSDGHGVVSSCLDCFLAGGILYRFEYAVTPAIFLAKARGGTCTLAVSDPDDIVVHRANYLLTNGFGLYNVFKNNCEDFAIYS
# KTGLLVVDDSTMGQSGQAVSIIGGPLAAVMSTPLRLVTTNVYGMVATAVGVYCASRYAADIGMRRDVMKVSAEDLTTRLTTGLLRVVEPSLAVLPPTT
# S]
# end gene g3
###
# start gene g4
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	43659	47979	0.6	+	.	ID=g4
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	43659	47979	0.6	+	.	ID=g4.t1;Parent=g4
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	43659	43661	.	+	0	Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	44247	45289	0.71	+	.	Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	45323	45638	0.73	+	.	Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	45727	45815	0.91	+	.	Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	46289	46383	1	+	.	Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	46651	46826	0.97	+	.	Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	47177	47447	1	+	.	Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	43659	44246	0.94	+	0	ID=g4.t1.cds;Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	45290	45322	0.74	+	0	ID=g4.t1.cds;Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	45639	45726	0.94	+	0	ID=g4.t1.cds;Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	45816	46288	0.97	+	2	ID=g4.t1.cds;Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	46384	46650	0.97	+	0	ID=g4.t1.cds;Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	46827	47176	1	+	0	ID=g4.t1.cds;Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	47448	47979	1	+	1	ID=g4.t1.cds;Parent=g4.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	47977	47979	.	+	0	Parent=g4.t1
# protein sequence = [MMNFKPPETKTTPSSSSYSSTAEKAFSLISKGWKEVRSSADADLQLIRNRAKELENFLSSVPTITATATATATATTPG
# EIDFVKKLRPKLSEIRRAYSSPDFNWAPKGKLRIDLSGITNAIVTESEDEKLGKWRREKRFKDEKQFGELSNWEPIRAFRNRLREMEVEIKSSNASSP
# VEIFEGIKNSEFMEKVKSSFKSICKEPEESKGVPPLDVPELLAYLVRQSSPFLDQIGIRKDISDKIVESLCSKRRNKLLPEGDCSLIEGDNMIDELEL
# RIASVLQSTGHHYEGGFWSNSTKQNVSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSEKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQELYI
# RNWLEERVGFKTDFKISFYPGKFSKERRSILPAGDTTQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGALQAFLVK
# HVNNWVTRAHCDKVLRLSAATQDLPRSVVCNVHGVNPKFLKIGEKMAAERQNGQQVFSKGAYFLGKMVWAKGYRELIDLLAKHKSDLDGFNMDLFGNG
# EDAHEVQTTARTLNLNVNFMKGRDHADDSLHSYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFQAFPNCLTYKTSEDFVTKVKEAMTGEPQ
# PLTPEEQYKLSWEAATQRFIEYSDLDKVLTSEKGGDRRKTRIKGIGKSVSMPNLGGMVDGSLAFAQYCLTGNEFVRWCSGATPGTRDFDQQHCEDLNL
# LPPQVENPIYGW]
# end gene g4
###
# start gene g5
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	48494	49387	0.63	-	.	ID=g5
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	48494	49387	0.63	-	.	ID=g5.t1;Parent=g5
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	48494	48496	.	-	0	Parent=g5.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	48494	49387	0.63	-	0	ID=g5.t1.cds;Parent=g5.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	49385	49387	.	-	0	Parent=g5.t1
# protein sequence = [MIMESKNALKEFALSIKTMAQPISYICNTKNVIDDLKLTLGTSKTFFRYDESRVMDCVPTASVVSLLIAVTKCVDEIS
# EAIEELSSKARFEKKSMSPATASRSHRPRILHRGTVNPIVEDEMNGGDFVSIEIGDNVDSKGEVVVEEVNQVNNTINATKEESFVIWISGSTAMAIVE
# EMITPKKIGDFMDLVDIKLYNNIPFVESTKGVLTVLEEANQVNNTLFKTEEESIVIGIRGNTTTTKVEEMEMTENKVELTDLTDIKFNNSIQFLESIL
# MTVTTIVEEMKTTEKRRFCKFSR]
# end gene g5
###
# start gene g6
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	56785	58926	0.58	+	.	ID=g6
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	56785	58926	0.58	+	.	ID=g6.t1;Parent=g6
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	56785	56787	.	+	0	Parent=g6.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	56785	58926	0.58	+	0	ID=g6.t1.cds;Parent=g6.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	58924	58926	.	+	0	Parent=g6.t1
# protein sequence = [MEKSCSLLIHFDKGTPALANEIKEALEGNDIPAKVEAMKKAVMLLLNGETLPQLFITIIRYVLPSEDHTIQKLLLLYL
# EIIEKTDSKGRVLPEMILICQNLRNNLQHPNEYLRGATLRFLCRLNEVDIIEPLIPSIMNNLEHRHPFVRRNAILAVMSVYKLPHGEQLLVDAPEKIE
# NLLTTEQDPSAKRNAFLMLFQCAQERAINYLLTHVDRVSDWGELLQMVVLDLIRKVCRTNKAEKGRYIKIIISLLTAPSAAVTYECAGTLVSLSSAPS
# AIRAAANTYCQLLQSQSDNNVKLIVLDRLNELKSSHKDVMVDMIMDVLRALSSPNLDIRRKTLDIVLELITPRNINEVVLTLKKEVVKTQSGELEKNG
# EYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVVVFVREIIETNPKLRVSIVTRLLDTFYQIRAARVCSCALWIIGEYCLSLSEVESG
# IATIKQCLGDLPFFSVSEESEAADSSKKTQQANSITTLSSRRPAVLADGTYATQSAASETAFSPPTVVQGSLTTGNLRSLLLTGDFFLGAVVACTLTK
# LILRLEEVQPSKLELNKATTNALLIMVSMIQLGQSHALPHPIDNDSHDRIVLCIRLLCNTGNEVRKIWLSSCRESFVNMLSDKQLRETEEIKAKAQIS
# RSQPDDLIDFYHLKSRKVRNFYLKHGVFGRCNRFSFLIPAYTSLAIY]
# end gene g6
###
# start gene g7
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	60172	62650	0.22	+	.	ID=g7
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	60172	62650	0.22	+	.	ID=g7.t1;Parent=g7
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	60172	60174	.	+	0	Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	60193	60657	0.37	+	.	Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	61168	61660	1	+	.	Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	61747	62445	1	+	.	Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	60172	60192	0.37	+	0	ID=g7.t1.cds;Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	60658	61167	0.89	+	0	ID=g7.t1.cds;Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	61661	61746	1	+	0	ID=g7.t1.cds;Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	62446	62650	0.67	+	1	ID=g7.t1.cds;Parent=g7.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	62648	62650	.	+	0	Parent=g7.t1
# protein sequence = [MVAHVPKGMSQLELEDEVQDDLKRATGEFVKDENDANKLSRVLQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKET
# LQNLCLELATMGDLKLVERPQNYTIAPESSKQIKANIKVSSTETGVIFGNIVYESSNVLERTVVVLNDIHIDIMDYISPAVCSEAAFRTMWAEFEWEN
# KVAVNTVIQDEKGFLDHIIKSTNMKCLTAPSALEDECGFLAANLYAKSVFGEDALVNLSIEKQSDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGN]
# end gene g7
###
# start gene g8
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	72600	91104	0.06	-	.	ID=g8
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	72600	91104	0.06	-	.	ID=g8.t1;Parent=g8
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	72600	72602	.	-	0	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	72699	73083	0.85	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	73396	73720	0.94	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	73862	73966	1	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	74116	75053	0.98	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	75189	78063	0.84	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	78190	78294	0.99	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	78413	78546	0.92	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	78667	78943	0.86	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	79031	79346	0.98	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	79467	82811	0.84	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	82944	83688	0.75	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	84012	84777	0.94	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	84836	85551	0.28	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	85674	85785	0.31	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	85928	88903	0.82	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	89173	89905	1	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	90029	90878	0.91	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	90952	91047	0.85	-	.	Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	72600	72698	0.85	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	73084	73395	0.85	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	73721	73861	0.98	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	73967	74115	1	-	2	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	75054	75188	0.99	-	2	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	78064	78189	1	-	2	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	78295	78412	0.98	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	78547	78666	0.86	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	78944	79030	0.98	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	79347	79466	0.99	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	82812	82943	0.86	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	83689	84011	0.87	-	2	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	84778	84835	0.83	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	85552	85673	0.3	-	2	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	85786	85927	0.39	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	88904	89172	0.91	-	2	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	89906	90028	1	-	2	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	90879	90951	0.92	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	91048	91104	0.85	-	0	ID=g8.t1.cds;Parent=g8.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	91102	91104	.	-	0	Parent=g8.t1
# protein sequence = [MVKNKAQSKKQQKRGVDFKKIRRKIGRKLPPAQNATNTEIKSKAIILPEQSIASEKAGLAVSKKGLTLKELLQQTSHH
# NAKVRKDALIGIRDVLLKFPSELKLHKLAVIEKLRERISDDDKLVREALYQLLKSVIFPGCKEVGSLTFFLPVLSSSPGMVSRSESAFGMHTTTTLIL
# QNYEDILQKNKFYLQDKGRLKNALAGLVRCLSLLPCSNQGEGDSLKEIICFGSQESVQCLILHQISLVDISGSYTTHTYSVLSPIQDATRASLHAFDL
# DLSDKSTDLSGVVNKLTDLLPVLVSCFQDLSPSIHSMAHVDVQSFDCMSLLLQSIDLVVRFFVHASGNNQHDFQNLAPAYKKKNLSISDQSISAVTLK
# KIWDEFPLSSNHCLSEKDGDRYFMLNIVITEIFLHLSYGSKLSPGLLERFLEFIESSLSEKIHDGREAGKVHHEKHLISLVAFIPKLIMQVSVAWKSR
# ILQAFTKVFENCSAESSMKLACLSVVEEMLLPEQNCLYLDPKDLEILNHSTWIGELPKLLVLLGDKHPLHSKAVLRLQLRVGQTANLSMTPAKEYENM
# QYFIRAFYCTYSNETVSYGPFMRLPRDIQELSVCCLYYFPFLDKVILESLASCCICHELEPFILFRVMEVLHSAYKAGHIQIADYISFFITLLSRFQV
# YPEKIDPMEKHEGKSNRGTFKAVVRAVCSWLSQIGDDVLVLQMLEKIVLDEISQKQPVDNIYGFIRLLITLDSKPTRLSEETINRLSEVLPEYFLDVV
# NNIPEEDDESTKSLIRQTRVYYLLPCFFLFDRSNMLLNQILEVMGSFIRGNVPHSKGALAKDHSSRILSVVSVLLLVLGDIKMQKLLLSCKTQIRNIL
# ESMHRLESSEDITMTIEERHKIRSAYDILTAAVSTLEYD]
# end gene g8
###
# start gene g9
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	94777	97782	0.81	-	.	ID=g9
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	94777	97782	0.81	-	.	ID=g9.t1;Parent=g9
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	94777	94779	.	-	0	Parent=g9.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	95286	95423	0.92	-	.	Parent=g9.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	94777	95285	0.85	-	2	ID=g9.t1.cds;Parent=g9.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	95424	97782	0.88	-	0	ID=g9.t1.cds;Parent=g9.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	97780	97782	.	-	0	Parent=g9.t1
# protein sequence = [MELYFHHIWFVVALFLAFASLVFTVTDPNDLSIINEFRKGLENPEVLKWPENGGDPCGSPVWPHIVCSGSRIQQIQVM
# GLGLKGPLPQNLNKLSRLTHLGLQKNQFSGKLPSFSGLSELSFAYLDFNQFDTIPLDFFDGLVNLQVLALDENPLNATSGWSLPNGLQDSAQLINLTM
# INCNLAGPLPEFLGTMSSLEVLLLSTNRLSGPIPGTFKDAVLKMLWLNDQSGDGMSGSIDVVATMVSLTHLWLHGNQFSGKIPVEIGNLTNLKDLSVN
# TNNLVGLIPESLANMPLDNLDLNNNHFMGPVPKFKATNVSFMSNSFCQTKQGAVCAPEVMALLEFLDGVNYPSRLVESWSGNNPCDGRWWGISCDDNQ
# KVSVINLPKSNLSGTLSPSIANLETVTHIYLESNNLSGFVPSSWTSLKSLSILDLSNNNISPPLPKFTTPLKLVLNGNPKLTSNPPGANPSPNNSTTP
# ADSPTSSVPSSRPNSSSSVIFKPSEQSPEKKDSKSKIAIVVVPIAGFLLLVCLAIPLYIYVCKKSKDKHQAPTALVVHPRDPSDSDNVVKIAIANQTN
# GSLSTVNASGSASIHSGESHLIEAGNLLISVQVLRNVTKNFSPENELGRGGFGVVYKGELDDGTQIAVKRMEAGIVSNKALDEFRSEIDVLSKVRHRH
# LVSLLGYSVEGSERILVYEYMPQGALSRHLFRWKNFKLEPLSWKKRLNIALDVARGVEYLHTLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAP
# DKEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGMMALDEDRPEESQYLVSWFWNAKSSKEKLMTVIDPTLDVKDEITESISTLAE
# LAGHCTAREPGQRPDMGHAVNVLSPLVEKWKPLEDDPEDYCGIDYSLPLNQMVKGWQESEGKDLSYVDLEDSKGSIPARPTGFADSFTSADGR]
# end gene g9
###
# start gene g10
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	100924	105574	0.24	+	.	ID=g10
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	100924	105574	0.24	+	.	ID=g10.t1;Parent=g10
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	100924	100926	.	+	0	Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	101091	102309	0.6	+	.	Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	102566	102664	0.91	+	.	Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	102761	102881	0.85	+	.	Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	102951	103252	0.48	+	.	Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	103603	105438	0.91	+	.	Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	100924	101090	1	+	0	ID=g10.t1.cds;Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	102310	102565	1	+	1	ID=g10.t1.cds;Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	102665	102760	0.91	+	0	ID=g10.t1.cds;Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	102882	102950	0.92	+	0	ID=g10.t1.cds;Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	103253	103602	0.94	+	0	ID=g10.t1.cds;Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	105439	105574	0.9	+	1	ID=g10.t1.cds;Parent=g10.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	105572	105574	.	+	0	Parent=g10.t1
# protein sequence = [MQSKINSFFKPFSSSSSSITHKSVDSSQICSDDFEYKKVQPEILVTYQRRPQNPNGQMNGTSTGEASKQIDLEVPNLE
# VAKSGKILNKKRKYAQFYLELGQSDFLLHSCTICGFKYAKGDEEDEKFHKTFHKNYTHGIPLKGWRNERTIQIPSLEIGRIILVLDDDPTPQKNKVKE
# VVKMMEMELGDGWIYHQLCKVYLFISSQRISGCLVAEPIKRAYKLLSRPEGSRCNGSPEKEARQTSTTLQFGGVSFQREMVRRNQPTKSCEEFDESVS
# GVVLCEKESVSALCGIRAIWVTPSNRRKHIASYLLDAVRESFCKDLVLKQSELAYSQPTSAGKAFISSYTRSNSFLVYTTSDL]
# end gene g10
###
# start gene g11
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	106544	109573	0.76	-	.	ID=g11
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	106544	109573	0.76	-	.	ID=g11.t1;Parent=g11
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	106544	106546	.	-	0	Parent=g11.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	106544	109573	0.76	-	0	ID=g11.t1.cds;Parent=g11.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	109571	109573	.	-	0	Parent=g11.t1
# protein sequence = [MGDQICTRKVIVEVCNAKNLMPKDGQGTASAFAIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDVDSMASETLELNV
# YNDKKIGKRSNFLGKVKISGSTFVGVGFESLVYYPLEKRSVFSQIKGEIGLKIWFVDEETPPPPTATEEKKEEVAAEAAPEKKEEKTPTPAPEVTEEK
# PSTTTDENKSESAEKKEEEKKPDESGEKKEETPPENPKDGETPAAAAPPPPEVMEHPPIAQNKPPNKNPSANENTSELKILHKNLSTGVDRRTGAFDL
# VDQMPFLYVRLVKAKRAHHEPGSSAYAKLVIGTHSIKTKSLADYREWDQVFAFDKDGLNSTSLEVSIWVEKKEADDKIVENCMGNVSFDLQEVPKRVP
# PDSPLAPQWYSLEGVTGDQNPPGNDVMLAVWLGTQADEAFNEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQLGSGGTEPKVRNPDLYVKA
# QLGAQLFKTSRTTVGSSSSASNPTWNEDLVFVAAEPFEPFLVITVEDVTNGQVVGYAKVQVTSIDKRTDDKSEPRSRWFNLIGDEKKPYAGRIHVRTC
# LEGGYHVLDEAAHLTSDVRATAKQLSKPPIGLLEVGIRGANNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLT
# IGVFDNGRYKHDDALKKDVRLGKLRVRLSTLDTNKVYMGTYSLMVLLPSGAKKMGDIEIALRFTCSSWLSLIQAYTNPMLPRMHYIRPFGPAQQDILR
# HTAMRIVTARLARSEPALGQEVVQCMLDSDTHIWSMRRSKANWFRVVGCLSRAATLARWLDGIRTWVHPPTTILVHILLIAIVLCPHLVLPTICMYAF
# LIISLRYRYRQRVAITMDPRLSHVDAIGPDELDEEFDGFPSSRPMEHVRVRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATGIFVIVCLFA
# SLVFYVVPFKAFVVGSGLYYLRHPRFRDDMPSVPVNFFRRLPPLSDQIL]
# end gene g11
###
# start gene g12
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	114772	117261	0.26	-	.	ID=g12
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	114772	117261	0.26	-	.	ID=g12.t1;Parent=g12
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	114772	114774	.	-	0	Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	114815	115348	0.46	-	.	Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	115421	115493	0.8	-	.	Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	115687	117008	0.98	-	.	Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	117112	117192	0.83	-	.	Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	114772	114814	0.58	-	1	ID=g12.t1.cds;Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	115349	115420	0.54	-	1	ID=g12.t1.cds;Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	115494	115686	0.94	-	2	ID=g12.t1.cds;Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	117009	117111	0.88	-	0	ID=g12.t1.cds;Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	117193	117261	0.51	-	0	ID=g12.t1.cds;Parent=g12.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	117259	117261	.	-	0	Parent=g12.t1
# protein sequence = [MAILGNNRIEDVRWLCSLTESELDLLIGLKVLIQQRAKKIGHKSLANKFDLKTLRALSFVLMENLKGKLRDLSGTPDT
# AEFSSTLDACNLLNYVRDKTFANMGVEQLSSYICNDKRKRILEIHSSGPSSPMIPQLVDISVETKITRFSEDMAPNRKQRS]
# end gene g12
###
# start gene g13
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	142483	143217	1	+	.	ID=g13
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	142483	143217	1	+	.	ID=g13.t1;Parent=g13
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	142483	142485	.	+	0	Parent=g13.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	142483	143217	1	+	0	ID=g13.t1.cds;Parent=g13.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	143215	143217	.	+	0	Parent=g13.t1
# protein sequence = [MVEGGAGPEFSVVFYDGEREMNIGSIRIYPLLEFKAFQLMLSQRIGISPNQISIYLCDRKTSKLEDRRRIPITGKANF
# SLIAREIDCFFLVVLKRSRKSRNRKIIKPGGGFVTENESFSSVKPPPPGNPILLRRTHPNQFGSPFFDQISPLELENLNEKLQSLKIQREEYNYSMGV
# SSIPMHRNNPFPRIQDTFPVKMKAKCEQCRKGNNGNEEIPSFHHCKNDPVIVGVYRSRFGPVSPAGFC]
# end gene g13
###
# start gene g14
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	146761	147159	0.59	+	.	ID=g14
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	146761	147159	0.59	+	.	ID=g14.t1;Parent=g14
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	146761	146763	.	+	0	Parent=g14.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	147001	147114	0.59	+	.	Parent=g14.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	146761	147000	0.98	+	0	ID=g14.t1.cds;Parent=g14.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	147115	147159	0.59	+	0	ID=g14.t1.cds;Parent=g14.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	147157	147159	.	+	0	Parent=g14.t1
# protein sequence = [MENSSSENLDDGELWLPSDIFPVEETVSSANNKLKNNNPIASSLCCCYSCVLLLRHPHNSIFMAEQQVLQSVPKPFPI
# TEMFKASSSFLLTVFP]
# end gene g14
###
# start gene g15
C01HBa0130I12.1	AUGUSTUS_ab_initio	gene	147248	147963	0.22	+	.	ID=g15
C01HBa0130I12.1	AUGUSTUS_ab_initio	transcript	147248	147963	0.22	+	.	ID=g15.t1;Parent=g15
C01HBa0130I12.1	AUGUSTUS_ab_initio	start_codon	147248	147250	.	+	0	Parent=g15.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	147299	147398	0.61	+	.	Parent=g15.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	intron	147540	147660	0.42	+	.	Parent=g15.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	147248	147298	0.57	+	0	ID=g15.t1.cds;Parent=g15.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	147399	147539	0.44	+	0	ID=g15.t1.cds;Parent=g15.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	CDS	147661	147963	0.75	+	0	ID=g15.t1.cds;Parent=g15.t1
C01HBa0130I12.1	AUGUSTUS_ab_initio	stop_codon	147961	147963	.	+	0	Parent=g15.t1
# protein sequence = [MAEQVLHSFPKPFPVAERFRPPSSFLLTVFSRYCSGGSDRLRGVAPVQIVQFQTILNGVEEKQPVESLMEVRAPFLQK
# EEQSRFIGIQRRNLGLNRFAGNWVSPFVGFGGNGCGFNGESSSVRDYGGTGVFLPRIPSNINNNGGKKQGKSIISSSYVARILQKR]
# end gene g15
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C01HBa0130I12-Eskqt/AUGUSTUS_ab_initio/seq_with_defline_removed