#Draft Tomato chromosome 2 #autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl) S.lycopersicum-chr2 1 50000 1 N 50000 contig no S.lycopersicum-chr2 50001 181547 2 F C02HBa0007F24.3 1 131547 + S.lycopersicum-chr2 181548 231547 3 N 50000 contig no S.lycopersicum-chr2 231548 393732 4 F C02HBa0323C04.2 1 162185 + S.lycopersicum-chr2 393733 1300000 5 N 906268 contig no S.lycopersicum-chr2 1300001 1433000 6 F C02HBa0303I24.2 1 133000 + S.lycopersicum-chr2 1433001 1600000 7 N 167000 contig no S.lycopersicum-chr2 1600001 1726228 8 F C02HBa0163K16.1 1 126228 + S.lycopersicum-chr2 1726229 1800000 9 N 73772 contig no S.lycopersicum-chr2 1800001 1925139 10 F C02HBa0025N15.2 1 125139 + S.lycopersicum-chr2 1925140 1975139 11 N 50000 contig no S.lycopersicum-chr2 1975140 2119251 12 F C02HBa0190N21.2 1 144112 + S.lycopersicum-chr2 2119252 2169251 13 N 50000 contig no S.lycopersicum-chr2 2169252 2283747 14 F C02HBa0280E02.2 1 114496 + S.lycopersicum-chr2 2283748 2500000 15 N 216253 contig no S.lycopersicum-chr2 2500001 2634549 16 F C02HBa0209K17.2 1 134549 + S.lycopersicum-chr2 2634550 3300000 17 N 665451 contig no S.lycopersicum-chr2 3300001 3417181 18 F C02HBa0025A22.2 1 117181 + S.lycopersicum-chr2 3417182 3600000 19 N 182819 contig no S.lycopersicum-chr2 3600001 3717515 20 F C02HBa0101G09.1 1 117515 + S.lycopersicum-chr2 3717516 3767515 21 N 50000 clone yes S.lycopersicum-chr2 3767516 3903839 22 F C02HBa0320M09.3 1 136324 + S.lycopersicum-chr2 3903840 3953839 23 N 50000 contig no S.lycopersicum-chr2 3953840 4072151 24 F C02HBa0155C04.3 1 118312 + S.lycopersicum-chr2 4072152 4122151 25 N 50000 contig no S.lycopersicum-chr2 4122152 4229483 26 F C02HBa0168N10.2 1 107332 + S.lycopersicum-chr2 4229484 4600000 27 N 370517 contig no S.lycopersicum-chr2 4600001 4720940 28 F C02HBa0072A04.1 1 120940 - S.lycopersicum-chr2 4720941 4832832 29 F C02HBa0066C13.1 24328 136219 + S.lycopersicum-chr2 4832833 7000000 30 N 2167168 contig no S.lycopersicum-chr2 7000001 7138260 31 F C02HBa0329G05.3 1 138260 + S.lycopersicum-chr2 7138261 7188260 32 N 50000 clone yes S.lycopersicum-chr2 7188261 7268579 33 F C02SLm0019I01.2 1 80319 + S.lycopersicum-chr2 7268580 7318579 34 N 50000 contig no S.lycopersicum-chr2 7318580 7365465 35 F C02SLm0008E03.1 1 46886 + S.lycopersicum-chr2 7365466 7415465 36 N 50000 contig no S.lycopersicum-chr2 7415466 7658093 37 F C02HBa0167J21.1 1 242628 + S.lycopersicum-chr2 7658094 7708093 38 N 50000 contig no S.lycopersicum-chr2 7708094 7836427 39 F C02HBa0323A14.2 1 128334 + S.lycopersicum-chr2 7836428 7886427 40 N 50000 contig no S.lycopersicum-chr2 7886428 8066297 41 F C02HBa0204D01.1 1 179870 + S.lycopersicum-chr2 8066298 8116297 42 N 50000 contig no S.lycopersicum-chr2 8116298 8262525 43 F C02HBa0175O20.1 1 146228 + S.lycopersicum-chr2 8262526 8407860 44 F C02HBa0320D04.2 10556 155890 - S.lycopersicum-chr2 8407861 8457860 45 N 50000 contig no S.lycopersicum-chr2 8457861 8539259 46 F C02HBa0044O16.1 1 81399 + S.lycopersicum-chr2 8539260 8601894 47 F C02SLm0073G04.1 26451 89085 - S.lycopersicum-chr2 8601895 8651894 48 N 50000 contig no S.lycopersicum-chr2 8651895 8791827 49 F C02HBa0198A03.1 1 139933 + S.lycopersicum-chr2 8791828 8841827 50 N 50000 contig no S.lycopersicum-chr2 8841828 8977622 51 F C02HBa0165K22.1 1 135795 - S.lycopersicum-chr2 8977623 9056971 52 F C02SLm0049G16.2 35692 115040 + S.lycopersicum-chr2 9056972 9106971 53 N 50000 contig no S.lycopersicum-chr2 9106972 9243210 54 F C02HBa0291P19.1 1 136239 + S.lycopersicum-chr2 9243211 9293210 55 N 50000 contig no S.lycopersicum-chr2 9293211 9443636 56 F C02HBa0060J03.2 1 150426 + S.lycopersicum-chr2 9443637 9493636 57 N 50000 clone yes S.lycopersicum-chr2 9493637 9623233 58 F C02HBa0159F19.2 1 129597 + S.lycopersicum-chr2 9623234 9673233 59 N 50000 contig no S.lycopersicum-chr2 9673234 9785307 60 F C02HBa0009K06.2 1 112074 + S.lycopersicum-chr2 9785308 9835307 61 N 50000 contig no S.lycopersicum-chr2 9835308 9880891 62 F C02HBa0213A01.2 1 45584 + S.lycopersicum-chr2 9880892 9930891 63 N 50000 contig no S.lycopersicum-chr2 9930892 10066183 64 F C02HBa0023N04.2 1 135292 + S.lycopersicum-chr2 10066184 10116183 65 N 50000 clone yes S.lycopersicum-chr2 10116184 10221491 66 F C02HBa0106H06.1 1 105308 + S.lycopersicum-chr2 10221492 10312860 67 F C02HBa0116F10.1 19514 110882 + S.lycopersicum-chr2 10312861 10362860 68 N 50000 clone yes S.lycopersicum-chr2 10362861 10400424 69 F C02SLm0097L01.2 1 37564 + S.lycopersicum-chr2 10400425 10570215 70 F C02SLm0128E12.1 10114 179904 - S.lycopersicum-chr2 10570216 10620215 71 N 50000 clone yes S.lycopersicum-chr2 10620216 10721987 72 F C02HBa0030A21.2 1 101772 - S.lycopersicum-chr2 10721988 10779674 73 F C02HBa0074A14.2 52672 110358 + S.lycopersicum-chr2 10779675 10871638 74 F C02HBa0215M12.1 67803 159766 + S.lycopersicum-chr2 10871639 10921638 75 N 50000 contig no S.lycopersicum-chr2 10921639 11035367 76 F C02HBa0164H08.1 1 113729 + S.lycopersicum-chr2 11035368 11085367 77 N 50000 contig no S.lycopersicum-chr2 11085368 11197411 78 F C02SLe0010E18.1 1 112044 + S.lycopersicum-chr2 11197412 11266661 79 F C02HBa0134G09.1 54590 123839 - S.lycopersicum-chr2 11266662 11393938 80 F C02HBa0180C05.1 20927 148203 + S.lycopersicum-chr2 11393939 11443938 81 N 50000 contig no S.lycopersicum-chr2 11443939 11646956 82 F C02SLe0123B22.1 1 203018 + S.lycopersicum-chr2 11646957 11696956 83 N 50000 clone yes S.lycopersicum-chr2 11696957 11832787 84 F C02HBa0011A02.2 1 135831 + S.lycopersicum-chr2 11832788 11882787 85 N 50000 clone yes S.lycopersicum-chr2 11882788 12014563 86 F C02HBa0236E02.1 1 131776 + S.lycopersicum-chr2 12014564 12080676 87 F C02SLm0014P22.2 13385 79497 + S.lycopersicum-chr2 12080677 12130676 88 N 50000 clone yes S.lycopersicum-chr2 12130677 12227827 89 F C02SLm0065M14.2 1 97151 - S.lycopersicum-chr2 12227828 12322861 90 F C02HBa0016A12.2 19544 114577 + S.lycopersicum-chr2 12322862 12408479 91 F C02HBa0190P16.1 9835 95452 + S.lycopersicum-chr2 12408480 12485003 92 F C02HBa0031A13.1 12582 89105 - S.lycopersicum-chr2 12485004 12535003 93 N 50000 contig no S.lycopersicum-chr2 12535004 12622666 94 F C02HBa0124N09.1 1 87663 + S.lycopersicum-chr2 12622667 12672666 95 N 50000 clone yes S.lycopersicum-chr2 12672667 12815468 96 F C02HBa0236E08.1 1 142802 + S.lycopersicum-chr2 12815469 12865468 97 N 50000 contig no S.lycopersicum-chr2 12865469 13001045 98 F C02HBa0046M08.2 1 135577 + S.lycopersicum-chr2 13001046 13051045 99 N 50000 contig no S.lycopersicum-chr2 13051046 13158778 100 F C02SLe0033D19.2 1 107733 + S.lycopersicum-chr2 13158779 13212255 101 F C02HBa0111M10.2 54012 107488 + S.lycopersicum-chr2 13212256 13274064 102 F C02HBa0008G02.1 85198 147006 - S.lycopersicum-chr2 13274065 13322288 103 F C02SLm0066K03.2 74853 123076 - S.lycopersicum-chr2 13322289 13437178 104 F C02HBa0226F10.1 17208 132097 + S.lycopersicum-chr2 13437179 13487178 105 N 50000 contig no S.lycopersicum-chr2 13487179 13544502 106 F C02HBa0104A12.1 1 57324 + S.lycopersicum-chr2 13544503 13594502 107 N 50000 contig no S.lycopersicum-chr2 13594503 13725523 108 F C02HBa0073P13.1 1 131021 + S.lycopersicum-chr2 13725524 13950000 109 N 224477 contig no S.lycopersicum-chr2 13950001 14082204 110 F C02HBa0064B17.3 1 132204 + S.lycopersicum-chr2 14082205 14164788 111 F C02SLm0055O24.2 12197 94780 - S.lycopersicum-chr2 14164789 14214788 112 N 50000 contig no S.lycopersicum-chr2 14214789 14337449 113 F C02HBa0194L19.2 1 122661 - S.lycopersicum-chr2 14337450 14447457 114 F C02HBa0072B02.2 5384 115391 + S.lycopersicum-chr2 14447458 14497457 115 N 50000 contig no S.lycopersicum-chr2 14497458 14610759 116 F C02HBa0032J10.3 1 113302 + S.lycopersicum-chr2 14610760 14660759 117 N 50000 clone yes S.lycopersicum-chr2 14660760 14811187 118 F C02HBa0177F12.3 1 150428 + # END OF DRAFT CHROMOSOME BUILD. THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP S.lycopersicum-chr2 14811188 60000000 119 N 45188813 contig no S.lycopersicum-chr2 60000001 60071395 120 F C02SLm0045L06.2 1 71395 + S.lycopersicum-chr2 60071396 60121395 121 N 50000 contig no S.lycopersicum-chr2 60121396 60231454 122 F C02SLm0006E22.1 1 110059 + S.lycopersicum-chr2 60231455 60281454 123 N 50000 contig no S.lycopersicum-chr2 60281455 60396214 124 F C02SLe0034H10.1 1 114760 + S.lycopersicum-chr2 60396215 60446214 125 N 50000 contig no S.lycopersicum-chr2 60446215 60569398 126 F C02HBa0162I09.2 1 123184 + S.lycopersicum-chr2 60569399 60619398 127 N 50000 contig no S.lycopersicum-chr2 60619399 60710749 128 F C02SLe0096G02.1 1 91351 + S.lycopersicum-chr2 60710750 60760749 129 N 50000 contig no S.lycopersicum-chr2 60760750 60873541 130 F C02HBa0098J01.1 1 112792 + S.lycopersicum-chr2 60873542 60923541 131 N 50000 contig no S.lycopersicum-chr2 60923542 61048277 132 F C02HBa0044L14.1 1 124736 + S.lycopersicum-chr2 61048278 61098277 133 N 50000 contig no S.lycopersicum-chr2 61098278 61189856 134 F C02SLe0011K05.1 1 91579 + S.lycopersicum-chr2 61189857 61239856 135 N 50000 contig no S.lycopersicum-chr2 61239857 61350055 136 F C02SLe0042D07.2 1 110199 + S.lycopersicum-chr2 61350056 61400055 137 N 50000 contig no S.lycopersicum-chr2 61400056 61540323 138 F C02HBa0172G12.1 1 140268 + S.lycopersicum-chr2 61540324 61590323 139 N 50000 contig no S.lycopersicum-chr2 61590324 61678155 140 F C02SLm0057H03.1 1 87832 + S.lycopersicum-chr2 61678156 61728155 141 N 50000 contig no S.lycopersicum-chr2 61728156 61839671 142 F C02HBa0091J18.1 1 111516 + S.lycopersicum-chr2 61839672 61889671 143 N 50000 contig no S.lycopersicum-chr2 61889672 61998458 144 F C02SLm0042B19.2 1 108787 + S.lycopersicum-chr2 61998459 62048458 145 N 50000 contig no S.lycopersicum-chr2 62048459 62082077 146 F C02HBa0214B22.1 1 33619 + S.lycopersicum-chr2 62082078 62132077 147 N 50000 contig no S.lycopersicum-chr2 62132078 62230127 148 F C02SLm0064E19.2 1 98050 + S.lycopersicum-chr2 62230128 62280127 149 N 50000 contig no S.lycopersicum-chr2 62280128 62402802 150 F C02HBa0160F05.2 1 122675 + S.lycopersicum-chr2 62402803 62452802 151 N 50000 contig no S.lycopersicum-chr2 62452803 62536833 152 F C02SLe0010H16.1 1 84031 + S.lycopersicum-chr2 62536834 62586833 153 N 50000 contig no S.lycopersicum-chr2 62586834 62715587 154 F C02SLm0020N19.2 1 128754 + S.lycopersicum-chr2 62715588 62765587 155 N 50000 contig no S.lycopersicum-chr2 62765588 62848918 156 F C02SLm0065K08.2 1 83331 + S.lycopersicum-chr2 62848919 62898918 157 N 50000 contig no S.lycopersicum-chr2 62898919 62971175 158 F C02HBa0257H21.2 1 72257 + S.lycopersicum-chr2 62971176 63021175 159 N 50000 contig no S.lycopersicum-chr2 63021176 63145656 160 F C02SLm0100O21.2 1 124481 + S.lycopersicum-chr2 63145657 63195656 161 N 50000 contig no S.lycopersicum-chr2 63195657 63315157 162 F C02SLm0025E22.1 1 119501 + S.lycopersicum-chr2 63315158 63365157 163 N 50000 contig no S.lycopersicum-chr2 63365158 63427322 164 F C02HBa0185P07.1 1 62165 + S.lycopersicum-chr2 63427323 63477322 165 N 50000 contig no S.lycopersicum-chr2 63477323 63544727 166 F C02HBa0223O24.1 1 67405 + S.lycopersicum-chr2 63544728 63594727 167 N 50000 contig no S.lycopersicum-chr2 63594728 63633594 168 F C02HBa0212P19.1 1 38867 + S.lycopersicum-chr2 63633595 63683594 169 N 50000 contig no S.lycopersicum-chr2 63683595 63825899 170 F C02HBa0189G15.1 1 142305 + S.lycopersicum-chr2 63825900 63875899 171 N 50000 contig no S.lycopersicum-chr2 63875900 63991182 172 F C02HBa0040B13.1 1 115283 + S.lycopersicum-chr2 63991183 64041182 173 N 50000 contig no S.lycopersicum-chr2 64041183 64187102 174 F C02HBa0090O01.2 1 145920 + S.lycopersicum-chr2 64187103 64237102 175 N 50000 contig no S.lycopersicum-chr2 64237103 64327781 176 F C02SLe0016P15.1 1 90679 + S.lycopersicum-chr2 64327782 64377781 177 N 50000 contig no S.lycopersicum-chr2 64377782 64452914 178 F C02SLe0042O06.1 1 75133 + S.lycopersicum-chr2 64452915 64502914 179 N 50000 contig no S.lycopersicum-chr2 64502915 64620643 180 F C02HBa0013N18.1 1 117729 + S.lycopersicum-chr2 64620644 64670643 181 N 50000 contig no S.lycopersicum-chr2 64670644 64821805 182 F C02HBa0030D08.1 1 151162 + S.lycopersicum-chr2 64821806 64871805 183 N 50000 contig no S.lycopersicum-chr2 64871806 64970297 184 F C02SLe0057O21.1 1 98492 - S.lycopersicum-chr2 64970298 65125512 185 F C02HBa0155E05.2 3844 159058 + S.lycopersicum-chr2 65125513 65175512 186 N 50000 contig no S.lycopersicum-chr2 65175513 65291104 187 F C02HBa0155D20.2 1 115592 + S.lycopersicum-chr2 65291105 65382074 188 F C02SLe0053H21.1 56227 147196 - S.lycopersicum-chr2 65382075 65432074 189 N 50000 contig no S.lycopersicum-chr2 65432075 65570854 190 F C02HBa0161P02.1 1 138780 - S.lycopersicum-chr2 65570855 65603260 191 F C02HBa0031A21.1 100203 132608 + S.lycopersicum-chr2 65603261 65653260 192 N 50000 clone yes S.lycopersicum-chr2 65653261 65747770 193 F C02SLe0075O22.1 1 94510 - S.lycopersicum-chr2 65747771 65857843 194 F C02HBa0059M17.2 4964 115036 +