#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1944112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	1944113	1994112	11	N	50000	contig	no	
S.lycopersicum-chr2	1994113	2119251	12	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2500000	15	N	216253	contig	no	
S.lycopersicum-chr2	2500001	2634549	16	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2634550	3300000	17	N	665451	contig	no	
S.lycopersicum-chr2	3300001	3417181	18	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	19	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	21	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	23	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	24	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	25	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4229483	26	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4229484	4600000	27	N	370517	contig	no	
S.lycopersicum-chr2	4600001	4720940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	30	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	31	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	32	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	34	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	36	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	38	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836427	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836428	7886427	40	N	50000	contig	no	
S.lycopersicum-chr2	7886428	8066297	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066298	8116297	42	N	50000	contig	no	
S.lycopersicum-chr2	8116298	8272187	43	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8272188	8322187	44	N	50000	contig	no	
S.lycopersicum-chr2	8322188	8403586	45	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8403587	8453586	46	N	50000	contig	no	
S.lycopersicum-chr2	8453587	8593519	47	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8593520	8643519	48	N	50000	contig	no	
S.lycopersicum-chr2	8643520	8779314	49	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8779315	8858667	50	F	C02SLm0049G16.1	35696	115048	+
S.lycopersicum-chr2	8858668	8908667	51	N	50000	contig	no	
S.lycopersicum-chr2	8908668	9044906	52	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9044907	9094906	53	N	50000	contig	no	
S.lycopersicum-chr2	9094907	9245332	54	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9245333	9295332	55	N	50000	clone	yes	
S.lycopersicum-chr2	9295333	9424929	56	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9424930	9474929	57	N	50000	contig	no	
S.lycopersicum-chr2	9474930	9587003	58	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9587004	9637003	59	N	50000	contig	no	
S.lycopersicum-chr2	9637004	9682587	60	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9682588	9732587	61	N	50000	contig	no	
S.lycopersicum-chr2	9732588	9867879	62	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	9867880	9917879	63	N	50000	clone	yes	
S.lycopersicum-chr2	9917880	9955451	64	F	C02SLm0097L01.1	1	37572	+
S.lycopersicum-chr2	9955452	10005451	65	N	50000	clone	yes	
S.lycopersicum-chr2	10005452	10110759	66	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10110760	10202128	67	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10202129	10252128	68	N	50000	clone	yes	
S.lycopersicum-chr2	10252129	10353900	69	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10353901	10411587	70	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10411588	10503551	71	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10503552	10553551	72	N	50000	contig	no	
S.lycopersicum-chr2	10553552	10667280	73	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10667281	10717280	74	N	50000	contig	no	
S.lycopersicum-chr2	10717281	10829324	75	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	10829325	10898574	76	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	10898575	11025851	77	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11025852	11075851	78	N	50000	contig	no	
S.lycopersicum-chr2	11075852	11278869	79	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11278870	11328869	80	N	50000	clone	yes	
S.lycopersicum-chr2	11328870	11464700	81	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11464701	11514700	82	N	50000	clone	yes	
S.lycopersicum-chr2	11514701	11646476	83	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	11646477	11712593	84	F	C02SLm0014P22.1	13389	79505	+
S.lycopersicum-chr2	11712594	11762593	85	N	50000	clone	yes	
S.lycopersicum-chr2	11762594	11859752	86	F	C02SLm0065M14.1	1	97159	-
S.lycopersicum-chr2	11859753	11954782	87	F	C02HBa0016A12.2	19548	114577	+
S.lycopersicum-chr2	11954783	12040400	88	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12040401	12116924	89	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12116925	12166924	90	N	50000	contig	no	
S.lycopersicum-chr2	12166925	12254587	91	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12254588	12304587	92	N	50000	contig	no	
S.lycopersicum-chr2	12304588	12440164	93	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	12440165	12490164	94	N	50000	contig	no	
S.lycopersicum-chr2	12490165	12597653	95	F	C02HBa0111M10.2	1	107489	+
S.lycopersicum-chr2	12597654	12707686	96	F	C02SLm0066K03.2	13044	123076	-
S.lycopersicum-chr2	12707687	12822576	97	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	12822577	12872576	98	N	50000	contig	no	
S.lycopersicum-chr2	12872577	12929900	99	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	12929901	12979900	100	N	50000	contig	no	
S.lycopersicum-chr2	12979901	13110921	101	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13110922	13950000	102	N	839079	contig	no	
S.lycopersicum-chr2	13950001	14082204	103	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164792	104	F	C02SLm0055O24.1	12201	94788	-
S.lycopersicum-chr2	14164793	14214792	105	N	50000	contig	no	
S.lycopersicum-chr2	14214793	14337453	106	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337454	14447461	107	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447462	14497461	108	N	50000	contig	no	
S.lycopersicum-chr2	14497462	14610763	109	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610764	14660763	110	N	50000	clone	yes	
S.lycopersicum-chr2	14660764	14811191	111	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811192	60000000	112	N	45188809	contig	no	
S.lycopersicum-chr2	60000001	60083339	113	F	C02SLm0065K08.1	1	83339	+
S.lycopersicum-chr2	60083340	60133339	114	N	50000	contig	no	
S.lycopersicum-chr2	60133340	60243538	115	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	60243539	60293538	116	N	50000	contig	no	
S.lycopersicum-chr2	60293539	60403597	117	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	60403598	60453597	118	N	50000	contig	no	
S.lycopersicum-chr2	60453598	60561330	119	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	60561331	60611330	120	N	50000	contig	no	
S.lycopersicum-chr2	60611331	60686463	121	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	60686464	60736463	122	N	50000	contig	no	
S.lycopersicum-chr2	60736464	60859647	123	F	C02HBa0162I09.2	1	123184	+
S.lycopersicum-chr2	60859648	60909647	124	N	50000	contig	no	
S.lycopersicum-chr2	60909648	61051952	125	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	61051953	61101952	126	N	50000	contig	no	
S.lycopersicum-chr2	61101953	61226476	127	F	C02SLm0100O21.1	1	124524	+
S.lycopersicum-chr2	61226477	61276476	128	N	50000	contig	no	
S.lycopersicum-chr2	61276477	61389268	129	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	61389269	61439268	130	N	50000	contig	no	
S.lycopersicum-chr2	61439269	61568022	131	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	61568023	61618022	132	N	50000	contig	no	
S.lycopersicum-chr2	61618023	61769184	133	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	61769185	61819184	134	N	50000	contig	no	
S.lycopersicum-chr2	61819185	61858051	135	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	61858052	61908051	136	N	50000	contig	no	
S.lycopersicum-chr2	61908052	62048319	137	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	62048320	62098319	138	N	50000	contig	no	
S.lycopersicum-chr2	62098320	62169714	139	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	62169715	62219714	140	N	50000	contig	no	
S.lycopersicum-chr2	62219715	62291971	141	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	62291972	62341971	142	N	50000	contig	no	
S.lycopersicum-chr2	62341972	62459700	143	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	62459701	62509700	144	N	50000	contig	no	
S.lycopersicum-chr2	62509701	62625285	145	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	62625286	62675285	146	N	50000	contig	no	
S.lycopersicum-chr2	62675286	62765964	147	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	62765965	62815964	148	N	50000	contig	no	
S.lycopersicum-chr2	62815965	62935465	149	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	62935466	62985465	150	N	50000	contig	no	
S.lycopersicum-chr2	62985466	63100748	151	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	63100749	63150748	152	N	50000	contig	no	
S.lycopersicum-chr2	63150749	63296668	153	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	63296669	63346668	154	N	50000	contig	no	
S.lycopersicum-chr2	63346669	63455463	155	F	C02SLm0042B19.1	1	108795	+
S.lycopersicum-chr2	63455464	63505463	156	N	50000	contig	no	
S.lycopersicum-chr2	63505464	63572868	157	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	63572869	63622868	158	N	50000	contig	no	
S.lycopersicum-chr2	63622869	63747604	159	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	63747605	63797604	160	N	50000	contig	no	
S.lycopersicum-chr2	63797605	63881635	161	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	63881636	63931635	162	N	50000	contig	no	
S.lycopersicum-chr2	63931636	64023214	163	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	64023215	64073214	164	N	50000	contig	no	
S.lycopersicum-chr2	64073215	64184730	165	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	64184731	64234730	166	N	50000	contig	no	
S.lycopersicum-chr2	64234731	64349490	167	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	64349491	64399490	168	N	50000	contig	no	
S.lycopersicum-chr2	64399491	64490841	169	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	64490842	64540841	170	N	50000	contig	no	
S.lycopersicum-chr2	64540842	64603006	171	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	64603007	64653006	172	N	50000	contig	no	
S.lycopersicum-chr2	64653007	64686625	173	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	64686626	64736625	174	N	50000	contig	no	
S.lycopersicum-chr2	64736626	64835117	175	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	64835118	64990332	176	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	64990333	65040332	177	N	50000	contig	no	
S.lycopersicum-chr2	65040333	65138390	178	F	C02SLm0064E19.1	1	98058	-
S.lycopersicum-chr2	65138391	65253071	179	F	C02HBa0160F05.2	7995	122675	+
S.lycopersicum-chr2	65253072	65303071	180	N	50000	contig	no	
S.lycopersicum-chr2	65303072	65441851	181	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	65441852	65474257	182	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	65474258	65524257	183	N	50000	clone	yes	
S.lycopersicum-chr2	65524258	65618767	184	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	65618768	65728840	185	F	C02HBa0059M17.2	4964	115036	+