<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:50:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341457" ref_strand="+" ref_description="SGN-U341457        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|16944811|emb|CAC82811.1| resistance gene-like [Solanum tuberosum subsp. andigena](evalue: 2e-45, score=186)">
      <seq>acgcagtcacttgccttatccaatcagtcagaaggatttccagaatctgctattcattttttcttggtacctcttgctggattgtgggatatatctaaggcaaacggaaaaacaccaaatgattataggcacataaagttatctttttcggaagagttgaaggagtttggacttcgtttgctgtataaagatgaatctaagctcaaggccctgtgtgaaatgacgggaaataatgatgaaccaacagaacactgcatcgtgaaaaggaggggtcagtatgatgatgccagatgctcttcttctaagaaacaaaggtcacagctctagtatttgtctttgagaatctgctgcaacaaccagtctcttcacaaactttgcagctcttgtctctctgcttctgccgagccatgaaagaagtagctatggatggttatgcaaaaatgaatgctgcgatcgctaaggctgaaaaggaagagcgggagtgggatgagattgatcgaatgccgtttggacagcgaatgaactcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="13685" stop="8122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13385" g_stop="12976" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12975" i_stop="8544" i_length="4432">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8543" g_stop="8422" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="532" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U341457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13385" e_stop="12976"/>
          <exon e_start="8543" e_stop="8422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCAGTCACTTGCCTTATCCAATCAGTCAGAAGGATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTCTTGCTGGATTGTGGGATATATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATAAAGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGCTGTATAAAGATGAATCTAAGCTCAAGGCCCTGTGTGAAATGACGGGAAATAATGATGAACCAACAGAACACTGCATCGTGAAAAGGAGGGGTCAGTATGATGATGCCAGATGCTCTTCTTCTAAGAAACAAAGGTCACAGCTCTAGTATTTGTCTTTGAGAATCTGCTGCAACAACCAGTCTCTTCACAAACTTTGCAGCTCTTGTCTCTCTGCTTCTGCCGAGCCATGGTGAGTTAACTGATGTGAACAAGCTTAAACTTTTGATACTCAAATCATATCCTAGGATCATGCGATCTTAATTAAATTCATAACTTATAGTAGTCAAAATCAAGAATTTGAACTTGAGAATTAGTAAACTCTAAAATGAAAAGGTGAATACTTCAACTAATACCAAATAGTTAGTTTTCCAATTTGAAGAGATGTCGGTTTAGAAAGATAAATAGAGCTAACACTTGCTATAAGCGCTTCTTACTATAGGCGTTGAAGTCAGTCTGCCTGAGTATGTAAACTGTGTGGTTGATGATAACAAATAAACCTTCTACATCAGCCAATTTTTCTTCCTGCTTTACCAATCCAAGAATTTTCATGTATTGTATCGGAAAAGAAATGTTGCTTCTAAAGTTCTATGCTATACTCAAAATTGTTTTTTCGACTTGTTCATTTATGGTTCTTCTGTTTACATATGCCTAAAACTCTTTGGCTCTGTGTGTGATATTTGACCATCTATCAATCCCCTATAGGCGGCGGAAAATGGTATATTCTCAACTTGATTTGTAGTTGCTTCTATGTCAACATTAGTTCCTTAGGTAAGGGAAACATTGTCTGAGTTCTTCATCTGATTATGTGCTGCATTAGTATTACATTAACAAATTGGTCAATTCTATAATCAAATAATGTTGTGTATTCTTCTTTGGATTTTCAAAAAGATAGAAAATCTTTTAGGCCTCATTTGTTTGCACTTAATGGAGGTCAGAATCTTAATTAGTCCATTAAGTTCATTTATTTTATTTTTGGAAAAATCTCTTAATGGGTCTGAAGAGATCTGAACGAATCAGATCTGTAGGACATTCTTAATAACATTCAGACTCATTTGATAAGTTATTAAATAATAAATTGTAGCTTTCTACTTTAGATGTGTCTTTTTATCTCATAACTAAAAACTCTATTTTTCACTTTTCTCAATCATATACCATTTTTCCCAACCGGTAAGTTTTCATAAAAATTTCTTGTATTGATGTGTGTCAAGAACACTTGGTCGCAATAATATTTTTGGTGTATTGTTGTTTATCAAGGCTTTTGAATGAAAAAATAGTACTCCAAATCATGATTATTAGAACTTTTTTTAAATCAAAAGTGATACATTTTGTTGAAATGAAAATATAATAATATTTTATTAATATAATATTCATATGTGTATTCAGAAGCGGTGATTTATTATTTGATAACTTATTTAAATGAGTCTGAATGTTGTTAAGAGACTCCTACAAATATGATTCATTTAGATCTCTTCAGACCCATTAAGAGACTTTTTAAAAAATAAACCAAACGAACTTAATGAGCTGAATCTGAATAACTAAAATTCAGACCTAAAACTCAAATGTACTTAATGGGCTGAATCTGAATGATTAAGATTTAGACCTCCATTAAGTGCAAACAAATGAGGCCTAAGTGTGTTTGTTTTTAAGGACTGAATCTTAATTATTCAGATTCAGTTCATTAAGTTCGTTTGTTTTATTTTCTTATAAGCCTCTTCATGGGTCTGAATATATCTGAAAGATCTGTAACATCCTCTTAACACCATTCAGACTCGAAAATAAGATTTCTATCTTAATTCAACTACATCACAACAACTCATGAAAGTTGTTTTCTTATTTAATTAATGTTAATTACATGCTTACCGTTATAATTTCCTTTTTTCTTATTAACTTAATATGTCATTTACTTTCATAAATCAATCAATATATTTGAATTGATAAGAACTCCCATCATATAATATTTAGCACGATTTCAGAAAATAAAAAATATTAGTTGTTTGATCGATAATAATAATAAATGTCTATTATAAAATAATATATTTTCCTAAACAGTATACTACTACTCTATATAAACTATTTTATATTGCATTATATTAAATTCTCAAAGTTTTTGAGTGCAAAAGTAGTCTTATTAATGTTGTAACTTGATGTTTCATATTACTTTGTTACGTTAAAAATGTACAAAATTTCTATTAAAAAAAACTATTTTACTAACATGAGTTATAATATTTTATTGATATAACATTTAATTTCATAGACACATTCAGCTATTGAAAACAAACATTCACATGTTCAGATTCAGAGACAATATCTTAATATTCATATGTTTATTCAAATTTACACATTTAGATCTTAATATTCAAATGTGTATTCAGATTCAGACGTCTTAATCTTAATTAGAGTCGTCAAATAAATGGGATTGGCCCGCGAGCCTGCCCAACCCAACCCAACCCTTGAAATAAGTGGGGTTGAGCTTAATATTTTTGGCCCATCTATGAACGAGGCTTTTTAGCCCGCCCCATTTGGCCTCTTAGGACCAACCCGCAAGCCTCAGAGACCAGCCCGTGGGCTATAAATTTTTTTAATTTTTTTTATATATATTTTTAATAGTGTTTTAGTTGTAAAGATTTTATGAATAAATATTTTGAAAAACAAATAATCAAGTATTTTGTAATATCATCTTGCATGATGAATTGTAGATGAAGATGAACTTCTTAAGAAAATAATGTCACATGTTGATTCAAATGTCATCGATGATGAAAGTAGAAGAGGAGTTATAAAACGTTACTTAATAAGTCATGTAATATTTAGAAATTTAGATTTGTTAAGTATTTAGACTGCCTTGTGTTGCTGGAAATTTTTTAAACCAGCTAGTTTTTTGTGGGAGAAATGATGGAATGATCAACATTTATCCGCTAAATCTTATGTTGGCTATTATATATTTTTTCAAGTATTCACCAAAGTGTGTGATTCATAAATATATTTTTGTAAGTATTCATCGAAGTGTGTGATTTATAAATAAATTCATATATGAATTGATGTTGTGTTCATAGACGTCAAAATTCAGTACTCTTTCTAAGAGAGTAATATTGTTCATTTTTTGGTTGAAGGGTCAACCCGTCCCAATCCGTGGCCTGCTTAGGGCTGGGTTGAGCTGCTATTTTATTGATCCTTTAATTAAAAGGGTCAGCACACTCCAACCACTTAACTCTCTAGTCCGTTAGGATTGGGTTGGATTGGGACAACCAATTTTGACATCTCTAATCTTAATTAAAACAAATAAGGCCTAAGTATCATAAAATATAAGTATTTATGATTAAATTACAATTTAAATTAAAATATGATTACTAAAACAAATTAAAATTATAAATAAGAAGATTTTCAAGGTTGTCTTATTTAAATTTTAATTGAGTTTACAATAAAATTCAATTGTGATTTATAATTAGATTTATTTATTTTAATATAAGTAGTATCTTAAGGTTATAAGTTTCAATCAATTAATACACTTTTATTAATAAAAGATGTAGAGATTTAAAAAAGAAAAATGATTAAGAAAAGAAGAATAAGTCATAACAAATCATGAATATCGTTTTAACGTATTTTCTAGCTTACACACACTATAAACAGAGTGAAATCACTCTTCATACTACGCTTTACACTATATAGAATTTTAAATCGAAAATATTATAGATCTTAAGAGGTGAAACAAAGTTTTTTTTTTCTTTTAACTTTCTCGTTCATTTTTTACTCCTTTTTTTCCTTAATTTTCTTTAATTCCAAAGCAATGGTAATGGATTCTGAATTAAATTGTTTGACCGCCCTGTAAATTTTTAATCATGTAAATCTCTCTTAAAATATTTATTTGACCATGCATTTAATTTTTTTGACCATATATTTTAAATTGTTTGACTATATATTTTAGAAATTTGTCTTCAATTTTTTCAATTATAGACCAACTTTATAGAGAAATTCACTTCCACCCACAAAATTTTAATTTTTTCTCAAGACCGTCCTTGTGAATTTTTAATTAAAATTTGTAAAACTATCTTTAAATGTTTATTTGACTATACACTTGACCTGTTTGACCATATATTTTGAAAATCTCTTCAATTATTTTTTAATTATGAACCAATTTTTGAGAAAAAAATTTCACTTCTATCGATAAAACTCTAATTTTTTCTCCTAGACCATCCTTGTATGAGCAAATTACATCTACAAAAATAATAATAATACATTTATTAACTATTATTTCGATAAACAACTAAACAACACAATTTTTCTTTGTCAAGATAAGTTACGTAATCATAATTGTCTAGATAAGTTACATATTTAATCGATCGACCCGGAAAAAAAACCCAAAATAAACTAAAGCCCAAATTAGAAAAATAGCGCCAAAACACCTTTATGTTTGCAAAATCCATTTTCTCTCTCATTCATCTCTGTTGCAACAAAATTCTCTCACAAAAAACCAAAAAAGCTCTGCAAAAAGGTAAAATTCTTCTTCTTCTTCTCTGATTCTTCACATTTTTTCTGTGCATTTCATTGTATGAACGTAGAAAAATTCATTTGTGCATTGAAACCCTAGAAAAACAACGATTTCTTTTTTGTTTTCTTGATTGATATAGAAAGAAGTAGCTATGGATGGTTATGCAAAAATGAATGCTGCGATCGCTAAGGCTGAAAAGGAAGAGCGGGAGTGGGATGAGATTGATCGAATGCCGTTTGGACAGCGAATGAACTCACTGAT</genome_strand>
        <mrna_strand>ACGCAGTCACTTGCCTTATCCAATCAGTCAGAAGGATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTCTTGCTGGATTGTGGGATATATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATAAAGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGCTGTATAAAGATGAATCTAAGCTCAAGGCCCTGTGTGAAATGACGGGAAATAATGATGAACCAACAGAACACTGCATCGTGAAAAGGAGGGGTCAGTATGATGATGCCAGATGCTCTTCTTCTAAGAAACAAAGGTCACAGCTCTAGTATTTGTCTTTGAGAATCTGCTGCAACAACCAGTCTCTTCACAAACTTTGCAGCTCTTGTCTCTCTGCTTCTGCCGAGCCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGTAGCTATGGATGGTTATGCAAAAATGAATGCTGCGATCGCTAAGGCTGAAAAGGAAGAGCGGGAGTGGGATGAGATTGATCGAATGCCGTTTGGACAGCGAATGAACTCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327908" ref_strand="+" ref_description="SGN-U327908        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. | chr4:7197205-7201387 REVERSE | Aliases: F16J13.80, F16J13_80(evalue: 5e-44, score=175) genbank/nr: gi|16944811|emb|CAC82811.1| resistance gene-like [Solanum tuberosum subsp. andigena](evalue: 0, score=666)">
      <seq>attgcaaaaggaaaggggagaactcagcagactatggctcactcaagatttcgaaaaattctcaaatgcaaaaatacaagggaccaaggcaatcgaaacaatctggataccagaaattcaagacctaagctttaaaaaaaaaggccatgaaagacgtggaaaagcttaggatattatacatcaatggttttcatacacatgatagctccaacgatcagtaccttcccagcaacttgcgttggttcgactgttgtaagtatccttgggaatcattgccagccaaatttgatcctgacatgcttgttcatcttgatctccagcagagttcactgtttcatttatggaccggaacaaagaaatttccttttctacggaggctggttctcagccgctgtgctaacttgaggcgaacaccagatttctcggatatgccaaatttggagtatttgggtctaaaagagtgtaccaatcttaaagaggttcaccattccttgagatgttccaaaaaactcaataagttaaatttgagagactgtaaaagcctcgagagttttagctatgtttgctgggaatctcttgaatgtctatatctacaaggttgctctaatttagagaaattcccgaagatccggggaaaattgaagccagagataaagattcaagtgcaacgttctgggataaggaaactaccatcagctattattcagcaccagtcttgtcttacagaactagatttgattggcatgcaaaaccttgcaacacttccaagcagcattggcgagttaaaacgtttggtaaagctaaaagtgtccgactgctcaaaactcaaaatcttgccaaaagagataggtgatttagaaaacctggagatacttgaggccagatgtactctaatctcacaacctccgtcttccatcgtccgcttgaacaggcttaaagttttgacttttgcaaaacaaaaatcagaagtaggcctcgaaaacggagtgtacttttcattccctcgagtgaatgaaggattgcgctcattggaacatctggatctcagttactgcaatctaataaatgaaggacttccgatagacattggatgcctacactgtttgaaagcgttgaatctgaggggaaataatttcgagcatttgcctcaaagcatagcccgactttgtgctcttcaatccttggacttattagattgcaagaagcttacacaactgccagaatttccacggcaattagacacaatatacgccgattggagcaatgattcaatctgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="16037" stop="13341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15737" g_stop="15659" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15658" i_stop="15234" i_length="425">
            <donor d_prob="0.614" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15233" g_stop="14958" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="356" r_length="277" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14957" i_stop="14565" i_length="393">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14564" g_stop="13641" g_length="924"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="1280" r_length="924" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U327908" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1279</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15737" e_stop="15659"/>
          <exon e_start="15233" e_stop="14958"/>
          <exon e_start="14564" e_stop="13641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAAAAGGAAAGGGGAGAACTCAGCAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAAGTAAGTGGGGGCCAAAACTTACCTTATCAATCCTCGGTCTGTTAGGCACTTGTTCATCGATTACTTTTTGTTTGAAAGATGACAATTACTGGTTCTATTTAAATTACAGTTTCCTTCTATCACAATGGTGAAAAACTTTTCGACTCGATTTTAAAGAACTTCTCAAGAAAATGTACTTCTTTACAAAATTAATTGCTCAAAGTATTTCTCTTAAGCAACATATTTCTTGAGAAAGACCTGACTAATATTGTACCTTGATTTTTCTAGTGGCACTAGTTATTCAAGAACTTCAAGTGCAATAGTAAATAAACGGAACATGAGAAATTTGGCATTGCGAGAAGTGAGAAAGTAGTCATACTGAGTGCGGATTTTATTTATGCAGATATTTGAAGTTATACTTTGTAGACTAATGATTCTTTTGTCAGGGGACCAAGGCAATCGAAACAATCTGGATACCAGAAATTCAAGACCTAAGCTTT-AAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACCGGAACAAAGGTAAAATAACTGAATTCAATTTTATTTTTATTTTGATCAAATACATAGATAGACACTCAAAGTTGACAATAACTTTTGGATATACATCTCAACTGGACCATAGATACACCTTTTATTGATGAGTTAATGGTCAAAAACACACCTAATGTATCCCGATTAGACTTTTTAAAGAATCAAATACTTTTATCTTTAGCCAGGGGCAGATCCAAAGGCTTATTACAAGTTCACGTGAATTTAGTAGCTTTTGAAAAACGAAGAAGAAATGAAACACAATAGTTTGTAGATTCACAAATAGCCACTAGCCAAATCTAAATCCACCCTAATTATATGATTATTCTTTTACCTAACATTTCTTATTTTCCTACCTCATTCTTTTACTGTTTTGAATAGCAGAAATTTCCTTTTCTACGGAGGCTGGTTCTCAGCCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGTTCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCGAGAGTTTTAGCTATGTTTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCAGAGATAAAGATTCAAGTGCAACGTTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCACCAGTCTTGTCTTACAGAACTAGATTTGATTGGCATGCAAAACCTTGCAACACTTCCAAGCAGCATTGGCGAGTTAAAACGTTTGGTAAAGCTAAAAGTGTCCGACTGCTCAAAACTCAAAATCTTGCCAAAAGAGATAGGTGATTTAGAAAACCTGGAGATACTTGAGGCCAGATGTACTCTAATCTCACAACCTCCGTCTTCCATCGTCCGCTTGAACAGGCTTAAAGTTTTGACTTTTGCAAAACAAAAATCAGAAGTAGGCCTCGAAAACGGAGTGTACTTTTCATTCCCTCGAGTGAATGAAGGATTGCGCTCATTGGAACATCTGGATCTCAGTTACTGCAATCTAATAAATGAAGGACTTCCGATAGACATTGGATGCCTACACTGTTTGAAAGCGTTGAATCTGAGGGGAAATAATTTCGAGCATTTGCCTCAAAGCATAGCCCGACTTTGTGCTCTTCAATCCTTGGACTTATTAGATTGCAAGAAGCTTACACAACTGCCAGAATTTCCACGGCAATTAGACACAATATACGCCGATTGGAGCAATGATTCAATCTGTAAT</genome_strand>
        <mrna_strand>ATTGCAAAAGGAAAGGGGAGAACTCAGCAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACCAAGGCAATCGAAACAATCTGGATACCAGAAATTCAAGACCTAAGCTTTAAAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACCGGAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCCTTTTCTACGGAGGCTGGTTCTCAGCCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGTTCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCGAGAGTTTTAGCTATGTTTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCAGAGATAAAGATTCAAGTGCAACGTTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCACCAGTCTTGTCTTACAGAACTAGATTTGATTGGCATGCAAAACCTTGCAACACTTCCAAGCAGCATTGGCGAGTTAAAACGTTTGGTAAAGCTAAAAGTGTCCGACTGCTCAAAACTCAAAATCTTGCCAAAAGAGATAGGTGATTTAGAAAACCTGGAGATACTTGAGGCCAGATGTACTCTAATCTCACAACCTCCGTCTTCCATCGTCCGCTTGAACAGGCTTAAAGTTTTGACTTTTGCAAAACAAAAATCAGAAGTAGGCCTCGAAAACGGAGTGTACTTTTCATTCCCTCGAGTGAATGAAGGATTGCGCTCATTGGAACATCTGGATCTCAGTTACTGCAATCTAATAAATGAAGGACTTCCGATAGACATTGGATGCCTACACTGTTTGAAAGCGTTGAATCTGAGGGGAAATAATTTCGAGCATTTGCCTCAAAGCATAGCCCGACTTTGTGCTCTTCAATCCTTGGACTTATTAGATTGCAAGAAGCTTACACAACTGCCAGAATTTCCACGGCAATTAGACACAATATACGCCGATTGGAGCAATGATTCAATCTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340488" ref_strand="+" ref_description="SGN-U340488        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G69545.1 | Symbol: None | leucine-rich repeat family protein, contains Pfam PF00560: Leucine Rich Repeat domains; similar to disease resistance protein RPP1-WsA (GI:3860163)(Arabidopsis thaliana) | chr1:26152499-26154610 REVERSE | Aliases: None (evalue: 7e-19, score=90.9) genbank/nr: gi|47681363|gb|AAT37497.1| N-like protein [Nicotiana tabacum] (evalue: 7e-35, score=150)">
      <seq>tccctcaagtggatgaagggttacggtcattggaacatctagatctcagttactgcaatctaatagatggaggacttccagaagatattggttgcctacgctctttgaaagagttggatctctgtggaaataatttcgagcatttgcctcgaagcatagcacaacttggcgctcttcgattcttgaacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="23062" stop="22270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22762" g_stop="22570" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U340488" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22762" e_stop="22570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCAAGTGGATGAAGGGTTACGGTCATTGGAACATCTAGATCTCAGTTACTGCAATCTAATAGATGGAGGACTTCCAGAAGATATTGGTTGCCTACGCTCTTTGAAAGAGTTGTATCTCTGTGGAAATAATTTCGAGCATTTGCCTCGAAGCATAGCACAACTTGGCGCTCTTCGATTCTTGAACTTATC</genome_strand>
        <mrna_strand>TCCCTCAAGTGGATGAAGGGTTACGGTCATTGGAACATCTAGATCTCAGTTACTGCAATCTAATAGATGGAGGACTTCCAGAAGATATTGGTTGCCTACGCTCTTTGAAAGAGTTGGATCTCTGTGGAAATAATTTCGAGCATTTGCCTCGAAGCATAGCACAACTTGGCGCTCTTCGATTCTTGAACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332919" ref_strand="+" ref_description="SGN-U332919        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gtgtcgcgctgttacttcaccgtcttttgacaatttggctgccaccgctggtcaagttggcggtggagccaccaaaagtggtggtacaaaagatgttactatagttgtacatgatggcataaatggtaaggtaaatactactactactagtgtttactcatcatcatcaactagctatgttgagaataataaatatggtatctgcaaaatggcggttacattagagtcagtaaacgatgatattcgtgttaatgatggtggtagtgataataacgatgcaaccggtggtgctagccatgctaaaataagtaatagtattaatagctaagcttctatgtgttgggaaagagggtttgtgcgggggatgatatccctactcatattattatactattgttcgattttattattattgttatatactttgtttcaattatcgtattatcaattcttcatttgaacagatcgacttttttatttgatatcaatcttattatattatactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="37698" stop="38803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37998" g_stop="38502" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="517"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-U332919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37998" e_stop="38502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</genome_strand>
        <mrna_strand>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322068" ref_strand="+" ref_description="SGN-U322068        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT5G37710.1 | Symbol: None | lipase class 3 family protein / calmodulin-binding heat-shock protein, putative, similar to almodulin-binding heat-shock protein, common tobacco, PIR:T04107; contains Pfam profilesPF03893: Lipase 3 N-terminal region, PF01764: Lipase | chr5:14996389-14998630 FORWARD | Aliases: K12B20.160, K12B20_160 (evalue: 9e-152, score=533) genbank/nr: gi|1087073|gb|AAB34987.1| calmodulin-binding heat-shock protein; CaMBP [Nicotiana tabacum] (evalue: 0, score=661)">
      <seq>tgcgttgggtgtggaaacgttgtacttacataggcaatgatgacagtgccacgtggcctccagcaacctatgatgaatttgaacctattcctcgtctttgccggacaattcttgctgtttatgaagatgaccttcataacccaaagtttccacctgaaggaggatataggcttaacgctgattgggtggtgaagcgtgtgacgtatcgagacacactcggtaatgctccaccttatttgatttaccttgatcatgagcaccatgagattgttgtagccattaggggtttaaatttggttaaagaaagtgattataaagtcttgatggataataagcttgggaagcagatgtttgatggtgggtatgtgcatcatgggttgttgaaggcagcaatttggatgttgaataaagaatccgagactttgaaaaggctttgggttgagaatgggaagagttacaggatgatatttgttggacattctttgggttctggagttgcatcattgttgactataattgcggcgaatcacggggatagattagggggtatcccaaggagttcactccgttgctatgctgttgctcctgctaggtgtatgtcactcaatttggctgttaaatatgctgatgttatccactcagtggttttgcaggatgatttcttaccacgaactcccacccccctggaagatatattcaaatccgtcttctgtttaccatgcttgttatttttggtgtgcttgagagataccttcataccagaaggtaggaaactcagagatccaagaagattatatgcacctggtcgaatgtatcacgttgttgaaagaaaattttgcagatgtgggagattccctccagatgttagaactgccatcccagttgatggaagatttgagcatattgtgctgtcatgcaatgcaacatctgatcacggaattatttggatacaaagagaatcagagaaggcgttagcgagactcaaggaggctacaagtgctgaggcaccgacagctccaccaccggtgcagagaattgaaaggcagcataccctagaaaaagaacacaagaaagcactagaaagagctgtcactttgaatattccacacgccgtgccaacagacacagatgaggaactatcggtacacaaagaggacgactcagggcgaggagtaacagagacggctttttttatagaagatgcatccacaagtacaagccattccaccgatgcaagaactaactggaacgatgtagttgagaagcttttcgcgcaagatgaaacggggaagttgacattgaacaaagaagcaagttgtagtactgaatgacaaccctctttgaaggtgctctctctctcttcttatttttttttttctttcaaatttttttttgtgatggttgaagaaaagtattattcttgttcaattatttgtacatttttcttatgtaaaacaatatatatgaattagaatgttcaatttctaaagccccaaagaggggaatatagaaacagaaagaaatgaaaagtggttgtaattgcatttttatttgttttgtttgtgaaatgtttttgcatagtttttgctcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="52065" stop="59589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52365" g_stop="52583" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52584" i_stop="53531" i_length="948">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53532" g_stop="53965" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="653" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53966" i_stop="55495" i_length="1530">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55496" g_stop="55554" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="712" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55555" i_stop="55687" i_length="133">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.277" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55688" g_stop="55816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="841" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55817" i_stop="57763" i_length="1947">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57764" g_stop="57899" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="977" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57900" i_stop="58673" i_length="774">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58674" g_stop="59288" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="978" r_stop="1592" r_length="615" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1593" polyA_stop="1622"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-U322068" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1592</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52365" e_stop="52583"/>
          <exon e_start="53532" e_stop="53965"/>
          <exon e_start="55496" e_stop="55554"/>
          <exon e_start="55688" e_stop="55816"/>
          <exon e_start="57764" e_stop="57899"/>
          <exon e_start="58674" e_stop="59288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTTGGGTGTGGAAACGTTGTACTTACATAGGCAATGATGACAGTGCCACGTGGCCTCCAGCAACCTATGATGAATTTGAACCTATTCCTCGTCTTTGCCGTACAATTCTTGCTGTTTATGAAGATGACCTTCATAACCCAAAGTTTCCACCTGAAGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCGGTAAACTTTTTATTCGCATTGCTGAATTAGTTTCTTAGGACAGTGTCTAAGACGACTCAACTTGTTTGGATAGTTGTTACCTATTGTATTGGATTGTTAGTATAAGTATAATGTTTGTTTTGACTTTTGAATGATAATCGTATCGTATCATTGATCCCTTCATTAACAGCTTGTTTGGATGGTTGTTACGTAATTGTGTAGTGTTGTTAGTTTAACTACCATGTTTGTTTTGATTGTTACTTAATCATATCATTAAATCCGTCATTAACACCTTATTTGGATGGTTGCTACCTATCGTATCATATTGTGTTGTTAGTTTGAATACGATGTTTGTTTTGATTGATACGTAAATGTTATTGTATTGTATCATTAATTCCGTTGTTGATAAGTTAGATGAAAAGTTTCATTTTGGTGTGATCGCGTCGTTACCTTGTTTTTCTTCTTATATTGTCTTTGCTTATTATTTAACGAACCTATTTTATCCTTTTCTCACAATTTTCTATAATAACTTTGCCCCATATCCTACTTTTATTTATAATACTGTATGTTGATTCTTGAAAGTGTGGCATTACGTAATGACAGAAAACGATACAATCTATACAAACATTGTAAGCATCAAAACAGCACAATACTATATGGAGAAAATGATACATGTAGGGTAGGAGCTAGTTACAAGGGAATTCAATTGAATCCCTTAGCCTGAAAATGAAATTGTGCAAAAAGGGAAAAAGATGTGAGAAATTTTTTGTATAGTGTTAAAGGGGGTTTCAAAGTTAGTTTAAGGTGCAGGTTCAAATCATTGGTGGTGTGATGTTTTAGTATTTCTGAATCCCCTTACGTAATTTCTTGCTCCGCCATTGTGTGCATTTACTCATAAAAAATTATATTGCTTCTTTTTTATTTATTTCCAACAATATTTTCATTTAATATTGTTTATTTTTCCCACAGGTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTAGGGGTTTAAATTTGGTTAAAGAAAGTGATTATAAAGTCTTGATGGATAATAAGCTTGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAGGTGAGTTGGTTTAGTCGTTATTGATTTGCCTATTCTAGTTTGTTACAATCATGCTTTAGCAACATATTCAGAAAAATATTACTGCTTGATTAATATGTTGTACATTAGCTTGTGATTGGAAATGTTGGATATGCTGTTAGTGTGATTTAGACTAAAATATATGTTCGTTCTGTTGATTTATCTAGTAATAATTTTGGGCATTAGGAGGCTAGAGGAAAAGATCGAAATTTGATGCTGATAACTTAAAAGTCCTAAAATGTAGAAGCGGATTGAAGTTTTTTGAATGTCTCTATTGCAATCACCTTGTGATGAGTGGATGGTGAAAATGCGTTGGCTATCATCCTGTCCTTGTATTTATTGCAGACAAATGTGGTCTCTTGTTTATAGTTTGTCTTTGTGTCAAGATGTGTTGGCATGTACATATAGTAGAAGTAGGATGGGTGATCCCCAGAGAAGTCCTCGTGTTGCATCCCTTTAGTAGTAGTATTTTGCATTACGTAGTATCTTATGCTCATTAGCTCTTTTTATTTTGCTATTATGTTGTCGCTGTTTTCCTTTTTATCCTGTTCTGTCTACACTTCTTTTGAGCCGAGGGTCTATCATTTGTACCTTGTTTTTACGGGATTTTATAGGGAGCAACTTGTGTATGATAGCCATCAGATGAATTTCAGGAGACAGTTGCACTAACCTATGGCAGTTTTTAGTTCTTCTATATAACGACCAACTTAATGTAGATTAAAGTTTGCATAATGAGCTTATAACCAATATATTACAGGATCATGACTTGGGACATAGTCCGAAATGCAAAGTCAGACTATTTGACACTTCCAAATGGTCAATTTTTTTTGTCGAATTAGCATAAAGTTCCTCTTGTCCCAAAAACTAGCTCATTTCAGTTCATTCTGTCTAAATCCTATCTTGTTCTGTTCAGTTTGGTACCATTTGAAGTTTTCTCTTACAACTCATATCTTATAGATAATACAGAATAAATAATTGGATCTAAATATTTCAACTTTCGATAACGAGGGGGAATTCGAAGCCATTAGAGTGGAAGAAGGGACATTTGTATGTCTTTCATGTGTTTAGTGTGCTTCAACTTCTGATTCTGGTGGACCCAAACAATTAGTTAAAATCCAAATTAAGAAAATATGAATAAACAAAAGGTATGTCTAGCAAGGGAAATTTTGGTCAATCCACTGACCGGAAATGGAACAGCCTCCGCTCTTTACCTCAGACCAAACATAGCTGATTCAGGCTGTTTACTATGATGTATCTAACCATTATCAATGTCATGCTAATTCATTTCTGTCAGATAATAGTTGATGGGGCAGTCAAACTTTTAGGATATTGCAGTAAAATAATTACTCAAACCATGTTTGTGCTGTTTTTATCCGGGAATTTAAAAATATTGCTGGCTAAAAGCCATGAAGGCAATACAAGGCGTTGATTTGTTCCTTATTGCTAAATGGAACTTATGAAGCAATCATGTTCTCTGAATTAACACGTCTATTCTGGCTTCTTCTTCTTCAGGATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTGGTTAGTTCAATTATCCTACACTCTTTGGGTGCAGAGCAAAGCCCTTGAGTTTCCTAAATTCCTTTCGTGCTTTTTTTGCTATGGATGAATTGTCATAAGTATCTCTTAAACTGGGCGTTGATGCTTTCAACAGTTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAGGTAAATCACATTCAAAATATTGATTTACCATTCTGTACTTCTGTTTTCAGGCAGTTTTTACTTTTTTGATCTGTGAAGAGGATTTGCTTTTTAGACACCCTTTCCTCCTCATTGGCAAGATTCCAATCCTGTCATACGTGGAAATGCAGAGCGCTTGCTCCGAGGATAAAATATTAGAATTTTGCATCAATAGGTTCAGATGTATGACCTCACTTTGGCAACATACCACCTGACGTCTTGGACTAAGAAGCATTTTTGAACTATTCAAGATGTTACTGAAACCTTTTCATATTTGAACTATGTTAGTTCCTGTTGTTAATAGAGCAATGCGGAGTAGAATTGATTTAGCATTGCATCAAAATTTGATGCCCCTCTCACCGAATGGAACTCTAGAAAAGAAAGGTTAATAATGCTTCTGGACTAAATACACCAAGAAGAACTTGTAGGCATGCACAGTCACTAGGGCATGGAACAAAGTAATTAACTGCTAATAATCATCTTTGCTTGATTCAGATTTTATATTCGTAGAAGAGACATGGAAGGTGTTCGCTTATCCTTCCATACAATTAGTCTGTAGTATTACACTTGTAGTTTCTTGTACTTTGAGTTTGGTTGCTATCTGTTGTTTAATGCGTCTTTTGATTGTCATATTATTTTCTTGTGATTACTGTTCAAGATGATTTATCATGTTGTCTATAGAATTTTGCCTTGGCTTCTTTCACTTCTGTTTTTTCTTTTTACCGTGCTGCTTTGGACTGTTTTTTCGTTGAACTGAGGATCTACTTGGAAACCTCTCTACCTCCGAGATAGGGGTAGTCTGCATACGGTGTACCCTCCCCAGGCCCCACTTTGTGGCATTACACTAAGTAGTTATTGTTGTTGTAGGCATGGAGGTGTAGTTGTATACCTTTTACAATGTTAACTACAGAGAAGTTCACACAAGTCAAATCACTTATGCTAGCTAACTGATATACACCATCTACGCATCCAAATTTTTGAACCCAAATTTCTAGCCAGACAGAGTTCTTGTATTGCTATTGCCTACCATGATTTGCCATTTTCTACTGGTGAATTCTGCCTTTAAATTCCCATCTTTCAGAAGCCTTTAGTTTTAGTTCAACTAGAAATCACCTTATGTGATTTTCTTAATTGTGTCATATATAGAGGCTAATGATTGGACACATAGCCGTTCTGTTAACAGACTTAAGTACTTGACCAGACCTGATTGTTTACATTCCAAAAGTTTTAGCTTAAACTTTTTAGTTAGTACGTGTTTGCGGTCTTCTTCTCAAGTGCATTACGAATTGCCCGAGAGTGGAGCCAAAGTCTTATTTTTCTCATGCTGTGATCAGAGATCAATACTTACTGAACTTTACTGCTCGCTGTGTTGTACTCCCCTATCCCAATTTATAGAGCACTCTTTCCTTTTTAGTCGGTCCGAAAAGAAAGACACCTTTCTTGTTACATGTTCAAAAAAATAAAAATAAAAATTTCTATATTTACTAACAATGTCAACTTTAATCTCCGTTTTATGCTTAATGAGATGATTGATAGTCACACACACACACTAACATCTATGACTTATTTTAGACTACAAGTTTCAAAAGTCTTCCTTTTATTCTTAAACTCGGTGCCCAGTCAAACACCTTCATTGAAAGGAGAAACCATTTGATACTATGCATGCTTAGATTCAGAGTTATTGAACAGATTGTTTACTGCTATTATGTATCTCATCAAAATGAAATCTTGGGGGTACCCGGTGTTGACCGCTGCTTGTTCTATTCTAAGTAAAAAGAAAAAGAGATCTTCTTTTGTTGCAACTTCTTTGGAAGCTGAGCTCTTGGGTGAAATTTTGGAAAGCCAGTTTGTAATTGATTTATCAATTTGCTGATGTTGTAACATTGATGCTTTATTACTTTTTCTTAATCATATTTTGTTTCTCTTCAGATGTGGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACAAAGAGAATCAGAGAAGGCGTTAGCGGTAAGTGACTTCTGGATATTTTTCCATTTGAAAAGAGAACGAAATCATCATTAATGATTTCATTTCGATCAAACATGTGAGTTAAATGTCTTACCTTCATTGCAAGTCTGAAGAGTCAAAAGAGACGAGCCTAATGTTAGGCTTTTTTTCATGAATCAGAAAAGAAGCGAGTTGTGTCTTTTTTCCCCTTCAAATATCAGTTTTCACTAGTAAATATGACAACAGACGTGCAGACATTGACATATGAGCCTCTAAGGCGTAACGAACTTCATGGTAATCCCTCGAAAGGAACCAAAAATTTCTAGGAATATTAATTACACTAATACTCACCAAAAATTTCCAGGGTGAGTATAAGCCATGGTGTTCTCCTTGATATAAAGTCATATTTTTTTTTATTTTTTGGGGGTATAATAGCATTTCTCCCACGGCCAACTAAACAATGCCCGCTTATCTCTAAATTCATCAAGTTGTTAAATTGTGTATAGCAGCTATCTAGTTACTGCACGGCTTTATTTGGTAGTAGTTTGAGAATTTCATTCTGTGTTTGTCTTGCCTTATCAAGTTTGAACAATAGAGACACACCCCGCTCCGTGACTGTTCCATATGTAGGTGAAACTAGACCTTCTGTGAGCTAAGATTCCGTGAATTTGTTTCAATTCCTAAGATCCCAAAGGAGCAGAATAGTGTGCCAAACGCTGCCATGTTTCCGCATCCTAGAAAGTCATTTTGATTTACTTGAAAATGTTTGTTGAAGAAATATATGGTTCCCTGCAGAGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGCGAGGAGTAACAGAGACGGCTTTTCTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTCTTTGAAGGTGCTCTCTCTCTCTTCTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTCTTGTTCAATTATTTGTACATTTTTCTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTCTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAGTTTTTGCTCCT</genome_strand>
        <mrna_strand>TGCGTTGGGTGTGGAAACGTTGTACTTACATAGGCAATGATGACAGTGCCACGTGGCCTCCAGCAACCTATGATGAATTTGAACCTATTCCTCGTCTTTGCCGGACAATTCTTGCTGTTTATGAAGATGACCTTCATAACCCAAAGTTTCCACCTGAAGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTAGGGGTTTAAATTTGGTTAAAGAAAGTGATTATAAAGTCTTGATGGATAATAAGCTTGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTG.....................................................................................................................................TTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACAAAGAGAATCAGAGAAGGCGTTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGCGAGGAGTAACAGAGACGGCTTTTTTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTCTTTGAAGGTGCTCTCTCTCTCTTCTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTCTTGTTCAATTATTTGTACATTTTTCTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTCTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAGTTTTTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319786" ref_strand="+" ref_description="SGN-U319786        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA and export factor-binding protein, putative, transcriptional coactivator ALY, Mus musculus, EMBL:MMU89876 | chr5:14998871-15001832 REVERSE | Aliases: K12B20.19, K12B20_19(evalue: 6e-48, score=188) genbank/nr: ALY(evalue: 3e-64, score=249)">
      <seq>ttctccaattcccttttgttctctgaaaccctaacaacattttttcttctctcgatcaaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataattactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagaggggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttagaggtggatcatttagaggtggaaggacaacaggggctcctcgtagagggccacttggcgtgaatgctcggccatcagcctacaccattgccaagactttccgcagaaccaagaatttgccatggcagaatggtttgtttgaagatagccttagagctgcaggactgtcatcagtattggagagtggcacaaagttatatgtttctaatttagacgttggagtgactaatgaagatataagggaactcttttcggagatgggagaactagtacgatttgcaatccactatgacaaaaatggacgtccaagtggcgctgctgaggtggtctttgccagaagaagtgatgcattccaagctcttaagagatataacaatgtgcagttggatgggaagcctatgaagattgaaatagttggttccaacccagaaattcctttgtcagctcgtgtaaatgtagttggaggaaccaaccggaggaggactgtggttatggcgccaggtggtccagctcgtggaagaggagctgctactagtcgtggttctagtcaaaggggccgtggtggtttgaggaatgcacctggacgtggtcgaggtggtggtggcggtcgtggttggggtagaggtcgtggccgcggtggtaggggaagtagcagcaggggcgctgataagtcagctgaggatcttgacaaggaactggacagctaccacgccaacgctgacgccatgcaaacttagatatggcgcttccataacttgtgagttaactagaagaaccaatcatgtctactatgtctctgtatcacgtcaccaaaactcatgctttccagttgtagtttcttgccgtttatatgattgtacgataaatcgatcatttgatgaatgctttttaatcccctaatgaacgtatcgtaaatagagtggtttatttgtcttccccatcttcctatgcaactgtagttctgcttaaattatgcataaggtaattagattgttcaattgtactcacatccatttgaggtgataaagttcattgagtgaaaactttatattgcaaaanaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65937" stop="59972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65637" g_stop="65443" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64375" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="446" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.365" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62969" g_stop="62823" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="593" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62822" i_stop="62738" i_length="85">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62737" g_stop="62669" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="662" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62668" i_stop="61408" i_length="1261">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61407" g_stop="61223" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="847" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61222" i_stop="61032" i_length="191">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61031" g_stop="60981" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="898" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60980" i_stop="60785" i_length="196">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60784" g_stop="60272" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="1411" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1412" polyA_stop="1434"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U319786" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1411</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65637" e_stop="65443"/>
          <exon e_start="64625" e_stop="64375"/>
          <exon e_start="62969" e_stop="62823"/>
          <exon e_start="62737" e_stop="62669"/>
          <exon e_start="61407" e_stop="61223"/>
          <exon e_start="61031" e_stop="60981"/>
          <exon e_start="60784" e_stop="60272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAGGCAAGCTCAAAATTATTGCGAAATCTTATGATTTCATAGACACATCTGATATGCTTTATGAACACAACTGAAGGTTCTCTGCTTTTGTTTAGTTGACGTACAAGCAACTCTTGATTTTTTGGTTCAAAGGAGAAGTCCACTTTGGTTCAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGATGATTGAACTTTCTCCTTACTAAAGGATTTCTGATGAATTTTGATTTAAGTGGGAGACTCAGATGGCCCTATTCAGGCAAATCACTTCTTTGTAGGATGCTTCTTGGGGAGATTCATTAACTGAAAATTTAAGAGCCTTCACACCATTTAAACATCCCTAACCCCTAAATGTATAGAGATTGGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTGCAAGGAGAAGTCTACTTTGGTACAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGGTGATCTTTGAACTTTCTCCTTGCTAGAGGTTTTCTGATGGATTTTGATTTAAGTGGGAAATTCAGGTGGCCCTATTCAGGCAAATCACTTCATTGTAGCATGTTTCTTGGGGAGATCCATTAACTGATAATTTAAGAGCCTTCACACCATTTAAACATTCCTAAGCCGTAAACGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTCCAAGGAGAAGTCTACTTTGGTTCAGCCATAAGAAGCTGTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACCCTCCTTTGCAATAGATGTCTTTGAAGATTTTAAAACCTGTCTTGAAACACAGGAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGTGTAAGTTATTCTGCTTTTCATTTTGTATTATGATGTTTTCAGGGTCTTTTTACTTGCTAAGTTGCTATATGTTTATTTATACGAATGAATCTGTTTATTTGCTGTTTAAAGATAACACTACAAGAATTTGTGTGTATTATTATTTAATGTGGAAGAAAGAAACATGATTGAATCATAACAAGATGAGGAGGAGAATGAGAAGGAAGAATATCACCAGCAGTTTGCTGATGATGTTCTAAGAGTTAAAGTCGTGCGAAGATTGGCATGGCTGTGAAAGGTATAGAAGAATAGATCCTACTTTAAGATGTCAAAAATTTTGAACCCTACACTACTGGCTCTTGGGAGATTTGGTTAAAAGAATTTGATATAATAAAAGATCTATAATTAATTGATATGTGTCTGTAAATTTTAATGGACCCTTTGTCTCCTGTTATTTGTTTCAAGACCTTCAGTTGTGGATTAATTGAATATACCAATTCTTAGTCGCATGCTGCTAGTTTACTCTTGGTAGGTCTTTCATTGTTATATTACCACTGCAGAAAATAAAATAGGCACTATCTCAATAGAACCACATATTTTCTCATATAGAGTTGCAGCAGTAAGCTATTTGGTAGTAGCATTTGTCTGTAGAGATTTGTCTTGAGTTCATAGTACTAGTTTGGTTTTGTGGAAATTTCCTAGTATGACTTGTAAACATGATATGAAACGATGCAAGAAGACAGTTCAATTTCTTTAGCCTTCAACTCTCGAGTATTGTATGAATTCAAGATTTGAAGACCCATGAAAAATATATTCTCTGATAACTTGGCAGTAATAAATTATAGTTAATAAGTGGGTTTGAAGGTATCGCAAAGGCTTTCAAATTGATTATGGATATAATTGCAAGCGGTTTTAGCAAAGTGGGACCATTGAAAATGGCCTACAAGTCCCTCTCACTGGTTTTCTAGAAAGTGCTGCTCTCTACTGTTTAATATATGTGTTGACATTTATTTTTGAAGGTCTTTTTTCCCTTGATATAATAGTGTCAAATCAATCTTTTATCCTTTTTCGTTATAATATAGTAGTGTTCAGGAAAAAGAAGTAGAGGATAGCACATGTCCGTAGTTGCATACATATGCGGATATGTGTATTTGTTGCTTTGGTCTTTTGCTTACGAGTTTATCAAATATTTTTCTGTATTTGGCTCAATGTTTCTGAATTTTATAATGCTTGTTTTTAGTTTTGTACTTAAATGTGAAGTTGATCTCATCTCAACTTTCAGGGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGTTCCAACCCAGAAATTCCTTTGTCAGCTCGTGTAAATGTAGTTGGAGGAACCAACCGGAGGAGGACTGTGGTTATGGCGTATGTTAATCTATTAACCATCTCTTCCTTTGGACTGAGATTTTTGTTGTTTCATGTTTGTGTATGTTTGAATGCTAACCGTGTGCGCTTACATACTCGAAGCTCTTTCTGTGTATAAACATCTTATCAAAGGTTTTGTGCAAATGTTTTTTCTTTCTTTGAGAGTTGAATTTGTACTTCGATTTCTGCAGGCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAGGTAAATCTCAGATGTGGTTTTTCTTGTTAGACGAGCTGTGCTCAACAATACATGTACTTTCTATAGGCGTAAAAAAAGAAAAATACATGTATAAATACGGACCAGTGGAGACGTTCAGTCTTCAGTGTGAGCTGTTTTTCATGGTTACATGTGTTAGAGAATGTGTATAACCTAGATTTCATTTTTCTTTTCACAGTCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCCATCTTCCTATGCAACTGTAGTTCTGCTTAAATTATGCATAAGGTAATTAGATTGTTCAATTGTACTCACATCCATTTGAGGTGATAAAGTTCATTGAGTGAAAACTTTATATTGCAAAACA</genome_strand>
        <mrna_strand>TTCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGG.....................................................................................GAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGTTCCAACCCAGAAATTCCTTTGTCAGCTCGTGTAAATGTAGTTGGAGGAACCAACCGGAGGAGGACTGTGGTTATGGC...............................................................................................................................................................................................GCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAG....................................................................................................................................................................................................TCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCCATCTTCCTATGCAACTGTAGTTCTGCTTAAATTATGCATAAGGTAATTAGATTGTTCAATTGTACTCACATCCATTTGAGGTGATAAAGTTCATTGAGTGAAAACTTTATATTGCAAAANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336918" ref_strand="+" ref_description="SGN-U336918        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA and export factor-binding protein, putative, transcriptional coactivator ALY, Mus musculus, EMBL:MMU89876 | chr5:14998871-15001832 REVERSE | Aliases: K12B20.19, K12B20_19(evalue: 7e-19, score=69.3) genbank/nr: gi|46982390|gb|AAT08172.1| Hin19 [Nicotiana tabacum] (evalue: 7e-25, score=92)">
      <seq>cctttttctgtaacaattgttgatgatcattgaactttctccttgctagaggtttgctgatggattttgatttaagtgggagattcagatggccctattcaggcaaatcacttccctgtagcatgcttcttggggagattcgttaactggaaatttaagagccttcacaccatttaaacatcctaccccctaatgtatagagattagagggaactttcttaaccgtctgttatccttattgtttagtagcaatcactctagttttctcattattggtttaaagagggagtttgtggctgtcttcatgaattctacttgcattttgtggaactgctaagggacaagatcttctgttaccatctcatttcaaggcatttttgcaaaggtggcttcatttgaacatcagaactggagctcttacctttttgcttaagtacctgatgtgcagtgggtcaattccttttaactcccatctacacttaattctgcatcgttgacttctcttttgctattagattgcatttttttgagcaattcaacttaactggaaactacgtagtgcgatgaaactttgatgaaatgatctactgtcgaagaatggtgaatttatctaattgtttggtagcatgctgacttttgctttcacacctgttaatctttccggcatgcttgcttcagactttccgcagaaccaagaatttgccatggcagaatggtttgtttgaagatagccttagagctgcaggactgtcatcagtattggagagtggcacaaagttatatgtttctaatttagacgttggagtgactaatgaagatataagggtacaccttgagcttgtcttctcacattatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="63940" stop="62490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63647" g_stop="62790" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="858" r_length="858" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U336918" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63647" e_stop="62790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACC</genome_strand>
        <mrna_strand>CCTTTTTCTGTAACAATTGTTGATGATCATTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320445" ref_strand="+" ref_description="SGN-U320445        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L23 family protein, contains Pfam profile PF00276: ribosomal protein L23 | chr4:18504531-18505332 FORWARD | Aliases: T5J17.50, T5J17_50(evalue: 3e-55, score=212) genbank/nr: ribosomal(evalue: 2e-93, score=345)">
      <seq>ttttcgggcgctatttgcagatctgtgctttcgttgcgtgtttctacatatattggatttttgaactcagacttctccagctgaagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtcccattataatcggatgctgctagtttacttccaacaagttatatggagttctatgtttttttcttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70499" stop="66448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70156" g_stop="70096" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="116" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="257" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="66753" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="873" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="874" polyA_stop="888"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U320445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70156" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</genome_strand>
        <mrna_strand>GATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342353" ref_strand="+" ref_description="SGN-U342353        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtgcatggggagtattttgctggttaggaattgaaaaaaaaatcaactttgctgctttgggtctctctattttacccacaaaactcaatggtgaatggctaatcagaaaaatagaaaattgtgggaaccataaactaggaaaagcacaacccttcaattgttcttatttccccaattctttgatacacttctgaaattttcatggcatatcttgtgatagacttctgaatttgttttagaatactatttcattttcttttccctttttttcccttatggtgtatgaaaataacacattatgcaatttttatgttagacagcttaattagtattggaagtattatatttcatgtcaaattaaagaaaattcaagtttatatcctcctgcttgtgcgacttctatgttgttgaagtttgtaaaaaagagcctgttcaataggtgagtgaaaaataattcaacaagaaagaacagtttcttaatttgtagaacaaactaaagtagcttagtataaagagcgacaatgtctttttcacgaaagccttgtttactaaagaggcagctagcttgaggaattatcaaaaaatccaaaaagttaacctaatttatcaaccacatatatgcttgtccctggcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="71269" stop="70033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70969" g_stop="70333" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U342353" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70969" e_stop="70333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATGGGGAGTATTTTGCTGGCAAGGAATTGAAAAAAAAATCAACTTTGCTGCTTTGGGTCTCTCTATTTTACCCACAAAACTCAATGGTGAATGGCTAATCAGAAAAATAGAAAATTGTGGGAACCATAAACTAGGAAAAGCACAACCCTTCAATTGTTCTTATTTCCCCAATTCTTTGATACACTTCTGAAATTTTCATGGCATATCTTGTGATAGACTTCTGAATTTGTTTTAGAATACTATTTCATTTTCTTTTCCCTTTTTTTCCCTTATGGTGTATGAAAATAACACATTATGCAATTTTTATGTTAGACAGCTTAATTAGTATTGGAAGTATTATATTTCATGTCAAATTAAAGAAAATTCAAGTTTATATCCTCCTGCTTGTGCGACTTCTATGTTGTTGAAGTTTGTAAAAAAGAGCCTGTTCAATAGGTGAGTGAAAAATAATTCAACAAGAAAGAACAGTTTCTTAATTTGTAGAACAAACTAAAGTAGCTTAGTATAAAGAGCGACAATGTCTTTTTCACGAAAGCCTTGTTTACTAAAGAGGCAGCTAGCTTGAGGAATTATCAAAAAATCCAAAAAGTTAACCTAATTTATCAACCACATATATGCTTGTCCCTGGCATAT</genome_strand>
        <mrna_strand>GTGCATGGGGAGTATTTTGCTGGTTAGGAATTGAAAAAAAAATCAACTTTGCTGCTTTGGGTCTCTCTATTTTACCCACAAAACTCAATGGTGAATGGCTAATCAGAAAAATAGAAAATTGTGGGAACCATAAACTAGGAAAAGCACAACCCTTCAATTGTTCTTATTTCCCCAATTCTTTGATACACTTCTGAAATTTTCATGGCATATCTTGTGATAGACTTCTGAATTTGTTTTAGAATACTATTTCATTTTCTTTTCCCTTTTTTTCCCTTATGGTGTATGAAAATAACACATTATGCAATTTTTATGTTAGACAGCTTAATTAGTATTGGAAGTATTATATTTCATGTCAAATTAAAGAAAATTCAAGTTTATATCCTCCTGCTTGTGCGACTTCTATGTTGTTGAAGTTTGTAAAAAAGAGCCTGTTCAATAGGTGAGTGAAAAATAATTCAACAAGAAAGAACAGTTTCTTAATTTGTAGAACAAACTAAAGTAGCTTAGTATAAAGAGCGACAATGTCTTTTTCACGAAAGCCTTGTTTACTAAAGAGGCAGCTAGCTTGAGGAATTATCAAAAAATCCAAAAAGTTAACCTAATTTATCAACCACATATATGCTTGTCCCTGGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341139" ref_strand="+" ref_description="SGN-U341139        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcctacttcccgggggacgggtatttcataggtttcaaccgtaccagatagctctcgcctgttctgagtatgctttagctaacttcatcgaacaaaaatgcgatccagaaatcatgcaaagcgacagaatcaatcaactgcaagtgaagactctctgaaacactatggtgagaaagagagccacagctgctgcaaagacgaagccagtggcaatgaaactctggcaaacatatttcgaggtgcagtggggaaacttctgaaacgagtcatcaagtcacgtggctctcggggtctgtaaacagatgatagttacctacacaaacaggataccatcttcgagccagagaatggatcaagtgaggcagaaaagcagcttactggtactacaggtgtaaggactacattcgatgctaaatgctgctctacagatgtgttacaaaatgtgccatcagaagtggaacatggaagtacagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="73676" stop="76879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73958" g_stop="74097" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74098" i_stop="75911" i_length="1814">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.685" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75912" g_stop="75986" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="215" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75987" i_stop="76126" i_length="140">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76127" g_stop="76251" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="340" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76252" i_stop="76442" i_length="191">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76443" g_stop="76579" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="477" r_length="137" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-U341139" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73958" e_stop="74097"/>
          <exon e_start="75912" e_stop="75986"/>
          <exon e_start="76127" e_stop="76251"/>
          <exon e_start="76443" e_stop="76579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTTCCCGGGTTTTGGGTATTTCATAGGTTTCAACCGTACCAGATAGCTCGCGCCTCTTCTGATTATGCTTTAGCTAAATTCATCGAAAAAAAATGCGAACCAGAAATCAGGCAAAGCGACAGAATCAATCAACTGGTACGTTTCAAAAATCAAAACTGCATAAAAATTCAATTTTTTTTTGAGTTTTGCTTGTCATTTTGTAGTATTAGCACTGTTCTGGTGGTTTCTTGTTCTTCAATTTCGGTTGTCATCAGTGTTCTTGTGATTCAGTTATGACATTATTTCGTTGTTCTTAATGTTCTTCCTTCTTTATGTTGTGTAATGCTCTGCATTTCGTATTATTTCCTTCTTGTTACGGCTCCCATATGTGTAATCCTTTTATTTTAAAGCTTAGGTCTATTTAAAACAAATCTCTTTATGTTGTTGTTTATTGTTGTGTCTTCTTTTAAGTATGCACCCTTTTATCGGATTATTTCACATTTGTTTGCTAGTTTTCTTTGTGATTTCACTTTAGTAATTGATTGACCACAGCAAAACATAACCAAGAATGGATAAAAATTCTATCTTTGATTATTGTTTCTCCTTTTTTGTTTGCTTTTCTGTCTTATTTAACCACCCTTTATCTGTTTATGTCACATTTGTTTGCTAGGTTTCTTTGTGATTCAGTTTAGCATCTTATTAACCAGAGCTAAACATAACAAAGGATGCATAAAATTTTTATGTTTGACTATTGTTTCTCATTTTTCATTGGCTTAATACATAAACATACACTAACACTTGGCCTCAACTGGCTAGTAAGTGTTCTAACTTGGAGAGTGTACACCTAGACACCTCAACTTGGTCTCAACGGGTAGCTGACTACTTCAACTCATCCCCTTTCTTGTGGACACCGGATGTTGACATGGCATATAGATTTTGGAGGTGTCTTTGTAAGTTGGAGTGTTTAACTGACCTAGTGGAGATGAGTTGAGATGTGCATACTCAAAGTTGGAGCATTTACTTGCCAATTGAGGACAAGTTTGAAGGTTTATCTATGTGTTATGCCTTTTTAGTTTATTTATCCTATTCTTTAACTATCGGTTTAAGGGATTATTTGTTCCATGTTTTTCTTTGTGTTTCAGTTTAGCAAATGTTTAACTACATAACATTACAGCAAAACATAACCAAGAATGCATATAAAGTTCCATCTTTGATTAATGTTTCTCATTTTTGGTTAATTTTATCCTATTCTTTGATTTCCCCTTTATAGGATTATTTCATCTTTGTTTGCTAGTTGTCAATGTTATTCAGTTCATCAACTGGTATGTTTTCGTTAATTACACAACATGCCACCAAAAACACAACCAGACTGCATAAAGTTTCAATTTTTATATTTTTGTTACACATTTATTTGCTTTTCTAGTCGTTCTTACAATCCTCTTTTCAGGTTCATTCATCTTTCTTTGGTAGATATCTTAGGCTTTCTGTTTATCAAGTGGTATTTTTTCTTTAACCAACATCACAACACCAAAACATAAGGAAGAATGCATACAATTCAATCTTGGATTCTTGCACTTATTCTTTTAACTGGTCTCCCTCTTCAACTATCCCTCTATTGGATTCATTTTTTTTTTTGGTAGCGCTTTCTTGGTTTGGGTTATAGCTTTGAAAAAGCTTGTGGTTGAAGTGAAAAAATGAGTGGGTTCTCAATAGCCGACCATCTGAGGCATGTTTCTTTATTTTCAATTGATAACATGTGTATTTTGATGATAAGTAATTTCTGTTTGTCTGCATGAGTGGTGTCTTACTAGAAGCGAACATTCACGAGCTTTGCAAATGACTAGTGACCACTGATTAAAAAGGAGAAGATCAATATGCTTATGCATGGACTTGTGTTATGTGCTAGTTTGTTTGTTCCATTACCAGAGCGCACTGAGGTCTGGTTAACTTATATGTTCCATTTTGGACAGCAAGTGAAGACTCTTTGAAACACTATGGTGAGAAAGAGAGCCAAAGCGGCTGCAAAGACGAAGCCAGTGGCAATGGTTTGTTCCATTGCAATTGTTCATTATTAATTAATATTTTAAAAATCTTAATAAGTAATTTAATATGGACTAACAATAATAGTATAGATTTGAGTACTTTAAGATTGAAACTACGTTATGAATAGAATGCTTGATTTCAGAAACTCTGGCAAACATATCTCGAGGTGCAGTGGGGAAACTTCTGAAACGAGTCAACAAGTCACGTGGCTCTCGGGGTCTGAAAACAGATGATAGTTACCTACGCAAACAGGATACCATCGTCGAGGTTTGTTTCTTTCTTGATCTATCGCTTCAGTTAGGCAATGTACCGAGTGAAACATTTCCTGCTGGAAGAAGTCTCTTTTTTTCGTAGTGCTGAATAATCATATGTGGTTTGCACGTGTTTTGACGATGACTTAGGTATGAACTGCATTTTATAATCTATTTCTTAATTTCTATTATGTTATATATGTTTAGCCAGAGAATGGATCAAGTGAGGCAGAAAAGCAGCTTACTGGTACTACAGTTGTAAGGACTACATTAGATGCTAAATGCTGCACTACAGATGTGTTACAAAATGTGCCATCGGAAGTGGAACATGGAAGTACAGATGT</genome_strand>
        <mrna_strand>TCCTACTTCCCGGGGGACGGGTATTTCATAGGTTTCAACCGTACCAGATAGCTCTCGCCTGTTCTGAGTATGCTTTAGCTAACTTCATCGAACAAAAATGCGATCCAGAAATCATGCAAAGCGACAGAATCAATCAACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGAAGACTCTCTGAAACACTATGGTGAGAAAGAGAGCCACAGCTGCTGCAAAGACGAAGCCAGTGGCAATG............................................................................................................................................AAACTCTGGCAAACATATTTCGAGGTGCAGTGGGGAAACTTCTGAAACGAGTCATCAAGTCACGTGGCTCTCGGGGTCTGTAAACAGATGATAGTTACCTACACAAACAGGATACCATCTTCGAG...............................................................................................................................................................................................CCAGAGAATGGATCAAGTGAGGCAGAAAAGCAGCTTACTGGTACTACAGGTGTAAGGACTACATTCGATGCTAAATGCTGCTCTACAGATGTGTTACAAAATGTGCCATCAGAAGTGGAACATGGAAGTACAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331377" ref_strand="+" ref_description="SGN-U331377        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to PREDICTED: similar to DNA-repair protein complementing XP-C cells homolog (Xeroderma pigmentosum group C complementing protein homolog) (p125) [Rattus norvegicus] (GB:XP_232194.2); contains InterPro domain DNA repair protein Rad4 (InterPro:IPR004583) | chr5:5454806-5459620 FORWARD | Aliases: None(evalue: 1e-43, score=173) genbank/nr: gi|22326854|ref|NP_197166.2| expressed protein [Arabidopsis thaliana] gi|17065358|gb|AAL32833.1| Unknown protein [Arabidopsis thaliana] gi|34098839|gb|AAQ56802.1| At5g16630 [Arabidopsis thaliana](evalue: 7e-42, score=173)">
      <seq>tttagagggaagatgaacttgatggtattgattgggaagatgggccgggtgatactttgaagtctgaaagcaatgttaaggaagatacaatcaatggtgtgactgttgagtttgatgctccgcctgatcctagtaaacagaagacagtacgccgagcaactgcacaagaaaaggaattggctgagcttgtgcataaggttaacttgctttgtttactagcaaggggcaggtttgtagatagcgcttgcaatgatcctcttatccaggcttcgttactttcactgctgcctgcacatctgctgaagttgaccgatgctccaaaacttactgcaaaggcactagctcctcttgtcaattggatccatagtcatttccgtgttagaggtgcaaatgatatggagaagccatttcattcagctttggcatcaactctcgagtcccaggaagggaccccagaagaggttgctgcattatctgtggccctgtttagggccttgaatcttacgaccaggttcgtatcaatcttggatgtggcttctttgaagcctgaaattgagaaatcatatccctctggtaaaggccctagtaaggctggtagtgggatatttagctcttcaacattgatggtggctggaccaaagtgttctcctctctctcctgctaaatctatggcttatggcaagcacaatgtttctgataagacttcaacatctgctggccaagctaccaatgacaagtctagagaaactattacagataagtctaataaaagaatgtcagcatcgacatcagatgctcagggtgattctaatgatgcatgtattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="76294" stop="80599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76594" g_stop="76766" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76767" i_stop="76863" i_length="97">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76864" g_stop="76956" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="266" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76957" i_stop="77355" i_length="399">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77356" g_stop="77448" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="359" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77449" i_stop="77531" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77532" g_stop="77633" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="461" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77634" i_stop="79233" i_length="1600">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79234" g_stop="79283" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="511" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79284" i_stop="79984" i_length="701">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79985" g_stop="80299" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="826" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-U331377" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76594" e_stop="76766"/>
          <exon e_start="76864" e_stop="76956"/>
          <exon e_start="77356" e_stop="77448"/>
          <exon e_start="77532" e_stop="77633"/>
          <exon e_start="79234" e_stop="79283"/>
          <exon e_start="79985" e_stop="80299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAGATGGGCCAGTTGATACTTTGAAGTCTGAAAGCAATGTTAAGGAAGATACAATCAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAGGTGGTTTGAATATGATAGATATATGAATACCATGATATAAGATTTTAGTCCCTTGTTGGAAGTACATCAATTTATACTTTTCCTCCTTAAATTACAGGAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAGGTTCTTTCTTATGCCTGTAGTTTGATATTCTAACTAGAATAATCATCTGTCACCTTTCTTTTTGTTATGGACTCATGGTTGTTATATGTGTTGAACTTCAAAATTGTGTAAATTTAAAATCTCTATATAATTCTACAACATATGATCACTGGGAACTTTGTGCCTATGCTTACATACTCTCAGATAATTTCAGTTTATCATATGTTTTTCCGGAAACTCTCATTTATTTTGACATTAATCTATGACCTTTTCCCCCCAAAAAAAACATTAATATTTGACTTAGCATGCCATACCTCTTATGTGTGCATGATATGGAAATACTGGCGAGCTTTTGACTTTTGATCGTTTGCTCCAAGTACTGATACTTATACTATATAAGAAATCACTTACTTTTGCCAGGCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGGGTATGTGTTACATGTTATCATTATAACTACCCTTTGATATAGAAGTTTCATTTTCTTATTTCACCTTTTACCACTGGATGCAGATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAGGTATGTTTTCCTTTTATAAGCGTTTCCTCCTTTGTTTTGCTTGTTCTGAGCATAGCTTTTTCTGTAACATTGCGTGCTCTCTTGGGAATTTCCTGTGTAATGGATTAAGGCTACCCTGACATTTGACATGTTTCCTCTACATCACATGTTTACTTCTCTGCCCCATCATATATTTGCATCTTCTTGCTTTAGGATATGAATAGGGGTGGGTATAATTCACCGAAAATCGAATTACCGAGCAGAACCGAGAAATTTGGTGATTCACTAACTGGTACTATATTCAGGATTAAATTTCAGAATTCTGGTAATCAATTTTGATACCCGGTTCCAGACAAGTCAGTACTACCGAATGCCACAGTATTTTAATCTATTACAGTTTTCCAATTACAGACATCACTTACTCTTATTTCGGATTATCTATTTAGCTCAAGTGGTGGTATGATGCCTTAAATAAAGTAAAGATTCACAGTCAAATGACTCTGATAACATGTCAGTTTTTCTTGTTTGTGATTATAACCAATCAAGTTCTCTCGCTCTAATCTTGTGTACAATGTTCAATAATTTTTACTTTCTATTTAGAAAATAGTCTCTAATTAAGGAGCCAGCAGCACAGTTATCAACAAGTTAAATTTTAATGCTTCAGAGAGTTAATATGCTCGTTGTTTATTCAAGGTCACTGTCCTATTTAAATCAGTCAGTATCCTCATAGCTATTTCTTTCCATTTAAACCTTTCTATACTCTCTGTGCGCCTATTAAATATAGAAAATTTTTGAGGGTAAAACAAGCTGTTGGCAGAAATATAATTAATGGACAGTGGTAGAGCAATCCAGACTTTAAAGCAGGACCTGTTGAGTGTTTAGAAGAGTTAATGTGAGTGAAACAAATTAGGCCAACCAAAAAGTGGGGGGAGTACCGGAGTAGTAAAAAAGAGTTGTGGCCTTGTAAAGGTGAAGTCTATACATAATTGCCAACTTACTGTACCGGGATTTACCATACCGAGGTTTGATTTACTGTACTGGACTGAACTTTGGAAATTTCGGTATTTGGTATCTCCTATCTACTATCAATTACCGATTATCGAAAATTAACTTTGAAAATACTGAACAGAATTCCGAATGCCCTCCCCTAGATATGAATCAGATGGTTGGAGACTAGGTTGCATAGACACAAGCAGTCTTATAGTGACAGGAGATGGTAATGAATAATGATGGTTGCTGGCTTGCTGCTGAAGAAAATGGTTTTACTTCTGCTTTTCTGCTGAAGTCACCAAATTAGCTTGCAATTTCTTGTAATTCAGGCACAGTAATTCATTGCAGATCCGCTTGTGGAAGTTTCTCAGACAACTTTTTTTGTGTTTGTTCAATTAGAAAGTTCATAAGTTTGTTCTTTGCCCTTTTTGTCTTTAAAAAAAAATAAAAATAAAGAAACTATGGTCATTTAAATATGGTGTAATATCATGGTTAATTGCTTAACCTTTGGAACCTACCTATTTAAAAACAGAGTTGGAGACTGTCCAGACATCTTAATCTTGATTGAAGAAATAATGTTCAGTATTTGGCCCATTTATCTTAGAACAATTTTTTTTTTTTGTTATTACAGGTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAGGTAAGCTGCTACTTTCTTATTCTTATTACAGCTAAATAGCCTCTATTGTTCTTCTACTGACTGTTTTATTCTCCGTTACTCTGGCTTCTTAATGACGATCATGCGTAAATTCTCTAAGTCCTGGATTGTATACCATGAGGATTCATTTAAATGTGCAAGTCAGTGGGAGGGAGTTAAGCTGTGTAGAGCAGTCAAACTCTGAAACTATCTCAAGTCGGTTGAATTATTTTTATGACTTGTATTCCCCAGTTGGTAATAAGTGAGTTCTGTTTCCCATTTTCCTGTTCATATTTAGTTAGTTGCTAGAGCTATTGCATAGTGATGTTAACACATCTGTCAACGAATTGACTATTGTTGGAGTAAGGAAGTGCATAAATTTACCCTAGCTAAGTGCTGACAATTCAAGTTACCCTGGTTTTTGACATATTTGTGGAAGTCCCCTTCTGCAGACTTTTATTTTGGTAACAAGCAGCATGGTCTAGGAAGTTAGGTGACTATCTTGCATTAGAACTTCTCTTGTACAGGTTCTTTACTGTATTTCAAACATGAAAACCCCCTGGTGGTAGGTACACCAAAAGGACAATTTAAGCTGCTTATGTTTTCTATTCTCGATATTGCAAGCATTATGAAAGCCCCAAAGATTGCAAGTTTTTAATCTCATGACAAATTACCTTCAAGATATCTGAAGATATTCATTGCAGGTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAA</genome_strand>
        <mrna_strand>TTTAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAGATGGGCCGGGTGATACTTTGAAGTCTGAAAGCAATGTTAAGGAAGATACAATCAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAG.................................................................................................GAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGG...................................................................................ATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U347024" ref_strand="+" ref_description="SGN-U347024        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to PREDICTED: similar to DNA-repair protein complementing XP-C cells homolog (Xeroderma pigmentosum group C complementing protein homolog) (p125) [Rattus norvegicus] (GB:XP_232194.2); contains InterPro domain DNA repair protein Rad4 (InterPro:IPR004583) | chr5:5454806-5459620 FORWARD | Aliases: None(evalue: 4e-26, score=115) genbank/nr: gi|22326854|ref|NP_197166.2| expressed protein [Arabidopsis thaliana] gi|17065358|gb|AAL32833.1| Unknown protein [Arabidopsis thaliana] gi|34098839|gb|AAQ56802.1| At5g16630 [Arabidopsis thaliana](evalue: 3e-24, score=115)">
      <seq>cccttattccgaaatggtcgatctctacctgtttatgaggggcctgtggtgtgtaccgagttcaaggatgcaattcttgaggcatatgcagaagaagaggtgagaagagaggccaaagagcggaggaggactgaagcagaagctctttctaggtggtatcagcttctttcatcacttattacccgacagaggctgcacaattgttacgtagacggggcatcctcacaatcagcagtcaatattgcaacatccaacgataaatcctccttactagctggtggcagtgagaacacgaggagcgctcgtcaagaaaaatctgagatagccaaatctaatagtccaccatttgtacttgcagaaaaccatgagcatgttttctttgtagaagatcagactgttgatgaagaaagttcaacaaggacgaaacgatgtcgttgtggcttttcagttcaatatgaggagttgtagagctttaaatctctcaattttagtatgagaaattagagaactttttattctcatgcaaagttgggttgtaagttgaagttgatagaaatactaatgtatgattgtatgtaacatcagatcatgacaacaatctgtctttttgtataatatcggtttgggatgagcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="83067" stop="87258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83362" g_stop="83442" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83443" i_stop="83637" i_length="195">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83638" g_stop="84193" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="637" r_length="556" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84194" i_stop="87023" i_length="2830">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87024" g_stop="87042" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="656" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-U347024" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U347024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83362" e_stop="83442"/>
          <exon e_start="83638" e_stop="84193"/>
          <exon e_start="87024" e_stop="87042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATTCCGAAATGGTCGATCTCTACCTGTTTATGAGGGGATTGTGGTGTGTACCGAGTTCAAGGATGCAATTCTTGAGGTAATTAAATTGCATTAACTGTAATATATTTTCATCGCTTGGTTACATATCTTTGAGGTCTCCCCCACCAATCATGTTTTCGTTCTTCATTCCTCAAAACCTTTTTGTTCAAATGCTATCAAATAAGTCCAAAACCGTTACTGCATTTGAAGCACTCTGGTAGAACTACTGTTGAATTTGTTGAGATGTTATCAGGCATATGCAGAAGAAGAGGTGAGAAGAGAGGCCAAAGAGCGGAGGAGGACTGAAGCAGAAGCTCTTTCTAGGTGGTATCAGCTTCTTTCATCACTTATTACCCGACAGAGGCTGCACAATTGTTACGTAGACGGGGCATCCTCACAATCAGCAGTCAATATTGCAACATCCAACGATAAATCCTCCTTACTAGCTGGTGGCAGTGAGAACACGAGGAGCGCTCGTCAAGAAAAATCTGAGATAGCCAAATCTAATAGTCCACCATTTGTACTTGCAGAAAACCATGAGCATGTTTTCTTTGTAGAAGATCAGACTGTTGATGAAGAAAGTTCAACAAGGACGAAACGATGTCGTTGTGGCTTTTCAGTTCAATATGAGGAGTTGTAGAGCTTTAAATCTCTCAATTTTAGTATGAGAAATTAGAGAACTTTTTATTCTCATGCAAAGTTGGGTTGTAAGTTGAAGTTGATAGAAATACTAATGTATGATTGTATGTAACATCAGATCATGACAACAATCTGTCTTTTTGTATAATATCGGTTTGGGATGAGCTTAAATAATGCGATATGGTAACTAGTGAGTTTTTGAGCCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATGTAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCAAGACGTCATCATTGTTTATGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATTGTTTATAAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTCTGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTCTGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATGTAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTATGAACCATGCGTTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTCTGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGAACAATCTTTTTGCAGTTTCAGTTACTTATTGGAATAAGCAACTGTTACAACAATGTAGAACATTACAACAGATAAGTTACAACCATGAATTTGTTGTAATAAATCAAGATTTTAAACTCAAGTGGGGACCTTAAGCAACTTTGACAAAGACATTACCAATTCATAGGATACTTTAGAAGATATGATAGATAATGTCATGGACAAAGACTATCTACATTTTTTTTGTACATATGATGTTTTTGGTTCACATAACATGTCACAAATCCACTTTCCCACAGTCTCCATTTATATATCAATTCCTTATCCAAATATTCTCTTTTCTTTCACCTTCACTTCCAGCACACACTCACTTTATTAGTCAACCATCAAACACCACAACTGATTTTTTATCAACATAAAGAACAGGATCACTTGTAGAATTAGAATTGTTGACAAGACAATAATCTATTTGGAGAGTTGACAACAACACTGGGGGCCAATATAGTTAAACTAAGAATAAGAATCAAGTGTCAGAGAAAATAAACCTGATCTAACTCAACTTCAAAAGTTAGCTCGTAAAATGAAGATTGTCCAAACTATATAAAGACAACAATCCATTCCCTTAACCAATGTAGGACATTTCAATGGATGATAATAGGATTAAGAATTGAACAAGTGCATCCTCTTCTAACAAGAACTACAAATAAAACACCAACCAAGAAAAAAAGAAGACTAATACAACATAACAAAGCCAAATGAAGTAATAACATCCCACAAATTTTCAGTGTGAATCTTGAATCAACAAGAATTAAACAAGTACACACACTTCTAACAATCTATATTTCTCAGCTACAAGAATTACACACAAATCACTACAAATACAACATCAACCAAGAAAAACTTGAGACATAACACAGTCATTGAGAGTCATCACCATCAACAAAGTCAACAAATCTTCAGCTTCACTTTACACCATTCTGTGCTGGCTGTGGCTCAACTTCCCTATCTACTGTGAATCGCGAATCAACAAGCATTAAAACAAGTACAGGATCTCCTAACAATCTACATTACACAGCTAGAAGAAACACAACCCCTTACAACTACAACATCAACCAAGAAAACTTAAAAACACAACAGAGTTATAAAAGTCGTCACCATCAACCAAGTCTGCGGATTTTCAGCTTCACTCTAAACCATTTTGTGGTGGCTGCGGCCTAATCTTCCTAGGCCTACCTCTAGGCCTTCCGGTTTTCGAAACAGGAGCTAAGTCACTAGGGACACTTGTTGGTTTTGGTTTCTTGGGAGTAGGTGGTGCATTGGGGTCTTTTTTCGGGCGACCTCTTGGCTTTGGAGCTGCAATATCTGTTCCTTGTGGCAATATAGGTTTGGGTTTAGGTGGTCGGCCGCGGCCACGCTTAGGGGGTGCATCTGGACCAGGTTTAATGTAGTTGTTTTTTAGGAAAATAAGTTCACCAGTTTGTTTCATTCTATCCAAATGGTAAGTTATCAACTTTGAGTGTGCATCATTCATGTTTCCATACTTAGATTCAATGTACTTTGATATTGATGACTTGTTTGAGCCTTCTTTTTGTTGCAATGCATCAAGGGCTTCATAAATCATCTGATAATTAAAAACCAACATACCAAAAGTTGAGTTTTTTTTTTTAATGAAATAAATAATTTTCAAAAAAGAAGACAGACATGCAGATCTGTGTTTAAAAAAAAAAAAGCATTCTTGATGATCATGTGATCATGTGGAAGCCATTAAAGAAGTAAAAAAAAAAAGCAAAAAATTAAGAACTAGACAAAAGTTGTTCCTGTATCTTTAATAAACTGTTCTTTATTTTCTCTTTTTTCCCAAGTTTTCTTGGGATTCCAAATCTCATTTTTGGCACTAACAAATGCAAGAATCTACACTTTCAAAAATCCAAAATTCAAGAAAAATCCAGTTGTATTGCACAAAAGTTACAATTTTGCTTGAAAAAAATGATTACTTGTTTTTCTTCCTTCTTAGTTTTTAGTTATCAAAGATTAAATCTTTCTTCCAAAATCAACATAAAAGGAATCAACTTGAGTTAAAAAAAAAAAAAAATTGGCAATATACTTTGTACTCTCTCAATTTCAATTTATTTGTCTGATTTTATTGATATAAAATTTAAAAAAAAAACAAAAAAAA</genome_strand>
        <mrna_strand>CCCTTATTCCGAAATGGTCGATCTCTACCTGTTTATGAGGGGCCTGTGGTGTGTACCGAGTTCAAGGATGCAATTCTTGAG...................................................................................................................................................................................................GCATATGCAGAAGAAGAGGTGAGAAGAGAGGCCAAAGAGCGGAGGAGGACTGAAGCAGAAGCTCTTTCTAGGTGGTATCAGCTTCTTTCATCACTTATTACCCGACAGAGGCTGCACAATTGTTACGTAGACGGGGCATCCTCACAATCAGCAGTCAATATTGCAACATCCAACGATAAATCCTCCTTACTAGCTGGTGGCAGTGAGAACACGAGGAGCGCTCGTCAAGAAAAATCTGAGATAGCCAAATCTAATAGTCCACCATTTGTACTTGCAGAAAACCATGAGCATGTTTTCTTTGTAGAAGATCAGACTGTTGATGAAGAAAGTTCAACAAGGACGAAACGATGTCGTTGTGGCTTTTCAGTTCAATATGAGGAGTTGTAGAGCTTTAAATCTCTCAATTTTAGTATGAGAAATTAGAGAACTTTTTATTCTCATGCAAAGTTGGGTTGTAAGTTGAAGTTGATAGAAATACTAATGTATGATTGTATGTAACATCAGATCATGACAACAATCTGTCTTTTTGTATAATATCGGTTTGGGATGAGCTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318873" ref_strand="+" ref_description="SGN-U318873        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | high-mobility-group protein / HMG-I/Y protein, nearly identical to high-mobility-group protein HMG-I/Y protein (Arabidopsis thaliana) GI:1429211; contains Pfam profiles PF00538: linker histone H1 and H5 family, PF02178: AT hook motif | chr1:5138329-5139419 REVERSE | Aliases: F10B6.31, F10B6_31(evalue: 3e-09, score=59.3) genbank/nr: high(evalue: 2e-13, score=79.3)">
      <seq>gtcctcactctctctctctctctccatctctttgtggggacatttctctctttctctctctgcaagtttcaatggctactgaatttgtcaacaagattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgacgacttttataactctgttgtgtttttaagttttcttggttgatgttgtagttgtaaggggttgtgtttcttctagctgtgtaatgtagattgttaggagatcctgtacttgttttaatgcttgttgattcgcgattcacagtagatagggaaattgagccacagccagcacagaatggtgtaaagtgaagctgaagatttgttgactttgttgatggtgatgactctcaatgactgtgttatgtctcaagtttttccttgggtgatgnntgtattgtagtgatttgtgtgtaattcttgtagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87864" stop="85413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87564" g_stop="87449" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="85713" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="892" r_length="776" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U318873" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87564" e_stop="87449"/>
          <exon e_start="86487" e_stop="85713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTT-CTTGGTTGATG-TTGTATTTGTAGTGATTTGTGTGTAATTCTTGTAGCTG</genome_strand>
        <mrna_strand>GTCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAATTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTTCCTTGGGTGATGNNTGTA-TTGTAGTGATTTGTGTGTAATTCTTGTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319308" ref_strand="+" ref_description="SGN-U319308        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | senescence-associated family protein, similar to senescence-associated protein (GI:12836895) (Ipomoea batatas) | chr1:24733292-24736125 REVERSE | Aliases: None(evalue: 2e-114, score=409) genbank/nr: NTA15(evalue: 0, score=701)">
      <seq>gctagatgaaattatgtagttgctttgctttatttagcttatttttccatgtgggtgtccatcaattcttccaagatttcatctttactaaccccaccccacccccttctctctgtgctgggtagcaaaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctgggaattttgcttttggcttgtacgatcttgtagataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagtcaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccagaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcaagcaaccacagttgggaaagttattccttcaagtcaggcaattgcagaagcttgtaaatttgcttacaacgatgccaaatttgtgaatgaaagggcgaagaatgatattgtgctgctttctcgggaaataatgagaatggatgcccgtgcgcgccaagatgttgcatttcttggttcagagtttcttaagcttgatgctcgggcacgggaagatactgagaaagttgatcacaatgtaaagaaaagagccgaaagaatccagcatgttgccactattcttaaaaacatagctcaaacgagactgaagaaagctgctgatcgacactggagcgatggtgccttggaggctgatttaagacgtgccgattttgtggcaaaacagcgtgcaatggaggattctctgatggctctggagtttgtcaagaacattcatgataggatggtgagcaagatgtgcaaattgaaaagaagttccatcgatacggagaaaacaaggcatattactctagagaagaatgggaaaactctggagtttcttcctggggaagtttcagctgatcgcctcactgctatccaggaagcatattgggatatagcatctgcactttccgaagctgatggaattgactatactgatccagaagagctcgagttgttggtagcaacgcttatagatcttgatgcaatggatggtaaaagtagtgtatccttgctggccgagtgttcaagttctcctgatgtgaacacaaggaaagcattagcaaatgcacttgcagctgcaccgtccatgtggactttaggaaacgctggcatgggagcgttacagagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaatagttcataagctctacttacattagaaaaaaaaatgccaaactgatttcatcctttcatgctatgtaacttgtttgtatctttggatcattgatatttttatcaatgtataaaaagtctaaagcaacactttattcttcttatatacaaagcagatttctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="94520" stop="87800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94220" g_stop="94091" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94090" i_stop="92923" i_length="1168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92922" g_stop="92557" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="496" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92359" g_stop="92219" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="637" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91508" g_stop="91435" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="711" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91192" g_stop="91116" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="788" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91115" i_stop="91042" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.597" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91041" g_stop="90970" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="860" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90206" g_stop="90138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="929" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89983" g_stop="89937" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="976" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89823" g_stop="89709" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="1091" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="89626" g_stop="89558" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1092" r_stop="1160" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="89444" g_stop="89341" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1264" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="88695" g_stop="88620" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1265" r_stop="1340" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="88512" g_stop="88105" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1341" r_stop="1748" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1749" polyA_stop="1763"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U319308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1748</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94220" e_stop="94091"/>
          <exon e_start="92922" e_stop="92557"/>
          <exon e_start="92359" e_stop="92219"/>
          <exon e_start="91508" e_stop="91435"/>
          <exon e_start="91192" e_stop="91116"/>
          <exon e_start="91041" e_stop="90970"/>
          <exon e_start="90206" e_stop="90138"/>
          <exon e_start="89983" e_stop="89937"/>
          <exon e_start="89823" e_stop="89709"/>
          <exon e_start="89626" e_stop="89558"/>
          <exon e_start="89444" e_stop="89341"/>
          <exon e_start="88695" e_stop="88620"/>
          <exon e_start="88512" e_stop="88105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAGGTAAGACTTTTCCTTAATGTGCTATTGACTTACTTCATTCATCTGTCTTTCTTGTTTTAAGGTGAAATTGTTTAGTTTATTTGCTTTGTTTTGCTTATTTTTCCATGTGGGTGTCCATAAATGCTTCAAGATTCCATCTTTACTCTGTTAATAAAAGTTGTACCTCTTGGTTGCTGAAAATGAGGATTTTTCTGCTTGTTTAGCTTTAGTTTGACTAATTTCCATTTGGGTGTCTACGAAATTCTTCCAAGATTTCATCTTTATTGTACCCTCACTCTATTCATAAGTTGTACCTTTTGGTTGCTGAAACTGAGGATTTTTCCGTTTTGCTTAGCTTTATTTTGATTGATTGCCATGTGGGTGTCCATCAAATTTATTCAAGATTCTATCTTTATTGTGCCCTCACTCTGTTCATAAGTTGTACCTCTTGGTTGCTGAAACTGAAGATTTTTCTGCTTGTTTAGCTTTATTTTGATTGGTTTCCTTATCGGCAACTAAGTTCACTTACCCTTCGATTGAGTCTTTGGTTAAGAAAGGGAGATTTGAGGGGACATCACTAATTGTGGTCTAATCGTTACTACTGAACTTTTGAGGGTCTTGTGAAGGCTGGGTGCTTTTGAAGTTACTAGTTATTATGCATTCATAGGTGCTTTTGGTGATCCTGATTGCGATTAATGATTGAGAAGTATATGATTAATCTAGAATCCAAATTTATTGTATAACAATCCGTGTATTCTGCTTAAGTATATGTATGAACTGTTGGCAACGAGAACCATGAAATACAAAGCAGTTAAAAAAAAAACTTTTAATTTGAATCACAAAAAGGCAGTTGCTAAATGCCTAAATCTGAGCACGAACTCGAGGGAAAGCTATAGAGTACAGATGACAATACCAAAGGACGGCTAAGCGAGGCAAAGCACTCAACATGCTTTGCGCTTTGTTCAGGGCTTAAGTGCTCTTCAAGCACGCCTTCGGCAACATGAGTTTTGCAATAATACTTAATACTTTGGAACTTGATTATCTTTTTTAATTTGTGGTACTCTACCAATAAGGTCATTGTAGAGTAACCTTTGTCTTTATTCATGTTAGTAACCATTTTGATACTAGACAATTGTTTATAGTTTAAACTAAAGAATCTTATTTTGTTAGAATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCGGTACAATATATGCTAAACATTTTATGCATTATTTATTCAAGTCTTGTATCAGATTAAAATAATTACTGAGGCTAAAAAAATTCCATTATGGGTAAAATGAGAAAGTTCAAAAATCTAAATTATTTCAAAATGTAGCTGTCATTCTTTGGAACAGAAATAGTGTCACGTAAAATGGAATAGAGGGATTACTTTATACACCCCAGAAAAACGTTAGAGAGGTCAAAAAACTTAATTATAGTCCTCACCAGCCTTTTTCCCATTGAAAAAAGAAAAAACATTTTGTCATTTGTTGTATATTTAGCTTTGAATTGGGGTCAAGATATGAGGATATAATTTGTGAGCCTCCACTTAGGTAGAAGGAAGAGGACTGGCTCGTTATTAGAAATGAGATTTTGATACAGTTTACTATACTGTAGAATCAAATCTGCATGTTAAATGTTCTCTCTATGTCTGTACCTAGCAAATTCTAGAGACTATATAATTCGTTTAACAATCGAACACTGAGAGATAATTGGTGATTACAACACATTGAGATAATGTTTGTTTGATTTTTTGCTACCTCAAACTGTTATTCTCATCAGCTCCATCATCATATATTCCAGTATTTGTCAAATACCTCTGTACATCATCTTCGAAACCTACTTTATCAAATGAAATATGATACATTAGCTTCATCTCAAATATCTTCCTAATTTACTTTTACCCAACAGGGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATGGTAAAATTCTTTACCCGATTTTCAAGCTTTTACACTATGATAAAAGAACCATATTCAACTGCCTATTTGCAATTTTCATGCTGGGAATCAAAGTTCAATACTTTGATGTATATTGCTTGGATAGTGGTATTGGTGAAGGAGATAGTTGACAATAGCATTTGGATAATAACTTTTGTCATTTGATGTTGGTGATACACTCCTGATATTCTGATTGATCCGTTTTCTTTTCTTTCTTCAATTAGCTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACTGTAAGATAATTATCTACCATAAGATATTCCATCACCATCTTTTCATTGGGATGCTTATCAATTGTGCTTAGCAGATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAGGTGAATTTTTTCATTTGTGCCGTATAAATTCATGCAGTGCATTTTTTTCACTTGTTCCCTAAGGTAGCTGGAGGCAAAGTAGAGAGAATCATTTTCTTGTTTGCCATGTTGTAATTTAACTTGGATAAGATGAAGCATGCATTTTAGTGGCTCCACCAAGTAGACGGCCCATTAGAGAGGTAATTGCATAATCTCAGTCTCCAGATACATAGGGGCTTCTAATTGGAGATACAAAATGCACCAAAAGGTTATAAACTTGCGAGTACAGACAAATTGTAAGTTTTTAGGCCTTATCTATTAATAGTATTTAATTCCAAAATGAACATATTGAACCTGAGGTACATGTGATCAAAGATATAATGCGTCGAGCAGCACATGAAACCAAAGATCTAATTTATGAGTCAGGGACCTAAACTGAGTGTGGAAGTGATGTTCGATACATTCAGGCTGAAACTAGCAGAACATGTTTTCACCTCAAAATGCTGTAACATTTCCTAGTACAAGGCACATTGTGTTCAACAAGGTTATTAATGGATTAGACATGTATTGTGTTAGCATTTTCATTGATAATTCGGAAGTTCAAATCTTTATTGATCTGCTTGGCTTCTGCTACTGATTCGGAACCTCGAGAGCAGATAGCAGCTTGTTGACGACATCACTGTCTTTGCTATAAATTTATGTTGCTTTGCACAGTAGGTTCATTAAAATTATTTGGTGGCTAATATAGATAATCTAAAAGCAGCTGTTTTTCCTCAATAATCAGGCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAGGTATGGTTATTGCACAAAATGGAATTGATCTTCCATATTATGTGTTGTATGAAGATATGTTTATTTACTTCCTTCGTTTTAATAATGACTGCACTCACTACTCTATATTTATTTTTTCTTCGTGATTTCTTGTGTTTGTGTTGTGGTTTTGCAGTTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATTGTAAGTTCATTTTGCATCCTAGCAGTAATAACTAATAAAGGGAATAAATAACACAATTGATCTGACTTTAAATCTTCATCTCTGCTCCGTACTTGTATCCGTCTTCTGTTCAGGAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAGGTATCGAGCCTTGTCTACTTTCAAAGTTCTAATGAAGTAAATGAATACTTCCGTAAGTATAATTATATGTTAATACCTGCAGGAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAGGTCCCAACTTAAAAAAACTTAAATTGATAATAATGACTACGTCTGATTACCGTTGATGTATTAATTCTCTCTTCCACATCTCATTTCTTTTATAAATTTCCTGATTCGAGCAGCTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAGGTTAGCTTTTTCACCCTCTTTTGACATTTCTATGAAATGAATTAGACCCCGTTGTACTCTATTACGCGCTATCATTTCTAATCTGTGCAATTAAACCTCACATTTTTCGTACTCGAGGCTCCCAAAATAGTGTTTCTGCCCCTTAAAATCAACTGCACTTCGTTTTGGATGATACTGAGGCATTAATTTGTTTGTCTGGTTTTGACTTGACACGCGTTTAAGAAAACAAAGAGAACTTTTGAATCTTGTGTCTTAAACTAAAGATACGTAGTAGAATGTACCAAAATGTCTTTTAATCTTGTGTTCTTAAGCATGCCACGTGAAACTTTTAACCCAAAGAGTTGCCAATAAAAAGGAAATAGACATTCTTTTTTAAACGGACTGAAAAGGAAAGTAAGACAAACAAATTGAAACGGATGTAGTTTAACTGTTATTTCCAGCTTAAATTCAACCTCAATTTTTATTAGTTAAGAAATTATTGAACTTAGGAGGCTCCTAAAGATTGAATCTGTATCATCTTGAGACGAAGATGAAGGCGTTTTACTATCCTCATTTGTTTTATTTGTCTTTTACTTGTTTTGATTGATACAGTATTAGTCATTTTAGATCTGTATGACTCGAACACCTGTAAATTTCATCGTGCAGGAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAGGTAATTTGTATAGGAAACTGATGTCTTATCATACAATTTCCATCAACTACACTTTCTCTTATTGAAGCTATTCAACACTGACGGAAGGCTTTGTTATGTGTCCATAGAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAA</genome_strand>
        <mrna_strand>GCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG..................................................................................................................................................................................................................................................CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACT..........................................................................ATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG..........................................................................................................................................................TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT.................................................................................................................GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG..................................................................................GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG.................................................................................................................CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG...........................................................................................................AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320906" ref_strand="+" ref_description="SGN-U320906        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | exostosin family protein, contains Pfam profile: PF03016 Exostosin family | chr4:17867432-17869296 FORWARD | Aliases: F20D10.160, F20D10_160(evalue: 3e-15, score=79.3) genbank/nr: gi|50905787|ref|XP_464382.1| putative pectin-glucuronyltransferase [Oryza sativa (japonica cultivar-group)] >gi|46390077|dbj|BAD15452.1| putative pectin-glucuronyltransferase [Oryza sativa (japonica cultivar-group)] >gi|46390046|dbj|BAD15422.1| putative pectin-glucuronyltransferase [Oryza sativa (japonica cultivar-group)] (evalue: 9e-14, score=80.5)">
      <seq>ggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcaggtttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctcactgtccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaggagttgaggttggattctgagttcgttgttgaaactgagccgttggatcaattaggaagagtgaagagtagtaagttttgtttgttcttctacgaagctgaatcgacgttggatttgacggcagcaatggcggcgggatgtgttccggcagtgattgttgaccgtccggttcaggattttccgttgatggacgtattgaggtggtcggaaatggcactattgatcggaaaccgccgtggaggtcagggattgaaggcggtcctgagcggtgtgccggaggatagatatgagcggatgaggggattgtgtgtggcggcggctcaccatatggtgtggaacgcggaacctcaggcgtacgatgcttttcatatggtgatgtatcagctgtggatgagacggcatacgattagatacactcggagggaagaattttagtgttgaaaattcaatttcttttgcttgtagaattagtatatgattaataatactataatcctaattaacgggtcaataaattgtatgctgcctttataatgattgtaatttgtttactccctaaaaggacatgttaaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103335" stop="101894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103035" g_stop="102199" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="868"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U320906" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103035" e_stop="102199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTGAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTGTTGATCGGAAACCGCCGTGGAGGTCAGGGACTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATCAGCGGATGAGGGGATTGTGTGTAGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCTTTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGTGTTGAAAATTCAATTTCTTTTGCTTGTAGAATTAGTATATGATTAATAATACTATAATCCTAATTAACGGGTCAATAAATTGTATGCTGCCTTTATAATGATTGTAATTTGTTTACTCCCTAAAAGGACATGTTAAAA</genome_strand>
        <mrna_strand>GGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGGTTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAA---TC-CTC--ACTGT-CCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCTGAGTTCGTTGTTGAAACTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTTTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACGGCAGCAATGGCGGCGGGATGTGTTCCGGCAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTATTGATCGGAAACCGCCGTGGAGGTCAGGGATTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATGAGCGGATGAGGGGATTGTGTGTGGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCTTTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGTGTTGAAAATTCAATTTCTTTTGCTTGTAGAATTAGTATATGATTAATAATACTATAATCCTAATTAACGGGTCAATAAATTGTATGCTGCCTTTATAATGATTGTAATTTGTTTACTCCCTAAAAGGACATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320905" ref_strand="+" ref_description="SGN-U320905        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | exostosin family protein, contains Pfam profile: PF03016 Exostosin family | chr4:17867432-17869296 FORWARD | Aliases: F20D10.160, F20D10_160(evalue: 6e-21, score=98.2) genbank/nr: gi|15233650|ref|NP_195517.1| Exostosin family [Arabidopsis thaliana] gi|7485846|pir||T05631 hypothetical protein F20D10.160 - Arabidopsis thaliana gi|4467110|emb|CAB37544.1| putative protein [Arabidopsis thaliana] gi|7270787|emb|CAB80469.1| putative protein [Arabidopsis thaliana] gi|15293111|gb|AAK93666.1| unknown protein [Arabidopsis thaliana] gi|21280961|gb|AAM45007.1| unknown protein [Arabidopsis thaliana](evalue: 4e-19, score=98.2)">
      <seq>cccctaaactccaaacaatatagtatatgatattcgattgatcgaacagagacgaaagttaaccgtaataatatcaggagtgagattggtgtgaaaggattctcgctcaacggagaaatggcaactttcactttctcattgtgttttatactcttcctctttgtcttagttcatccttcttcgtcttcgtcttcgttttcgccttatctatatccgtcaacgttttccatgaactacgataagatgcttacgagtttcaaagttttcatatatccaacgactcaacgaattattttttttagtccgtcagcttcaaatttctacgaatctctcattaacagcgcgtttatcactcaggagcctgaagaagctgatctgttcttcgtggttttctctccggagatatctagtcgttctcaggcgcggcttgttcgtgagctgagaacgaagtatccttactggaaccggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcagatttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtactgtcccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaggagttgaggttggattcggagttcgtcgttgaatctgagccgttggatcaattaggaagagtgaagagtagtaagttttgtctgttcttctacgaagctgaatcgacgttggatttgactngaagcatggcggcgggatgtgttcccgtagtgattgttgaccgtccggttcaggattttccgttgatggacgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103796" stop="102274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103500" g_stop="102574" g_length="927"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="928" r_length="928" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U320905" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103500" e_stop="102574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAAACTCCAAACAATATAGTATATGATATTCGACTGATCGAACAGAGACGAAAGTTAACCATAATAA-ATCAGGAGTGAGTTCGGTGTGAAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACT-GAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGA</genome_strand>
        <mrna_strand>CCCCTAAACTCCAAACAATATAGTATATGATATTCGATTGATCGAACAGAGACGAAAGTTAACCGTAATAATATCAGGAGTGAGATTGGTGTGAAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTNGAAGC-ATGGCGGCGGGATGTGTTCCCGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322890" ref_strand="+" ref_description="SGN-U322890        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | Per1-like family protein, contains Pfam profile PF04080: Per1-like | chr1:5668431-5670701 FORWARD | Aliases: None(evalue: 3e-134, score=475) genbank/nr: Per1-like(evalue: 2e-132, score=475)">
      <seq>cttttacctttctcctcacttgctttggattctcctctcctttagccataaaaattggtgaattgaagaaatatgaatccctttgctaattgataaacaaatttgagtatccttttgtgaatctaacaagatggcagattgttattggatcactttctcggtagttttattttgtcttgttggagcttttgatgctagtgctggagatgctgaccctttgtacagggcttgttttggccaatgtaaagagaccggatgtgctggagaaacatgcttcggccattgcaatactcctttaaatagttcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattcaaagagaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaacgcgtctttgggcttcaggagcctgtttctgttgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttactacaagttacgatcaaatgccgatgagacgacctgctacagttacacgagtttgtggcacatctatgcgttcttgtctattaattcatggttatggagtgctatcttccacggtcgagacatggattttacagaaaagctagactactcatctgctgtggcattacttggattttccctgattgtatcagtactaagaagtttcagtgtaaagaatgaggctacgagagttctggttgctgctccattgcttgccttcaccaccactcatatactgtacctgaacaactatcaaatggactacggatggaacatgaaagtttgtgttgtgatagctgtttctcaacttctaatttggtcaatctgggctggaataagccatcatccttcccggtggaagttgtggacggtggttgttggaggtggcctcgctatgctcctagagatctacgacttccctccatatcaaggactcgtagatgctcatgcactttggcatgccaccacaatccctcttacctatatctggtggagtttcatcaaggatgacgcgaagtttggaacttccaactcgagtaaaaaagacgagtagtgttttttgacagggttttaaagttttatattgcttgatcagttttttgacataagagagctatagcaagtactcaaatagtaactccttttatgttccttcttgcaagtagaggatgtttgtttgtgctagaaaaaatagaaatcaaagtttttcagcctatagaagagtgtcatattacttagaggcagattcaagattttaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="110654" stop="104877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110354" g_stop="110225" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109992" g_stop="109898" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="225" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107289" g_stop="107028" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="487" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106915" g_stop="106719" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="684" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106521" g_stop="106334" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="872" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106333" i_stop="105673" i_length="661">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105672" g_stop="105169" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="1377" r_length="505" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U322890" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1376</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110354" e_stop="110225"/>
          <exon e_start="109992" e_stop="109898"/>
          <exon e_start="107289" e_stop="107028"/>
          <exon e_start="106915" e_stop="106719"/>
          <exon e_start="106521" e_stop="106334"/>
          <exon e_start="105672" e_stop="105169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAGGTAATTTGCTTGTCTAACCCTTTATTTCTTCCAAATTTTCAATTTCAAATGTAAAAATCAAATCTTGGACCTTTTTTTTTTCTTCAAATCTGGGGTTTGGAGTTAAAAATAAAATCTTGGAGCCTTTTTTCTATTTGGGGTTTGGAAGATAGAAACTAGTTTATTAAATTTGTGAGATGATATGTAAGATATGAGATTAAAGATTTGATTTTTATGAATTTTGTGATATCAGATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAGGTAACATTTTCTGATAATTTTGCCTTATGGTTAATCGAGGTAATGGTAAAGTGTGCGTATACACTACCCTTCCCAGACCGCACTTGTGGGATTCCATTGGGTATTTTGTTGTTTTATCTTATGCTTAGTATTTATGAGATTTTTCATTTTCTACTTTTGATTTTTAGTAGTTTAGGCCAAAGTGTAAAGATATAATATAGATTCATTTGAATGATTTGGAATCACAATTTATATGTGCATTAGTTTTTCTTGTTTTGAAAAAGGTAGTAATGTATTATATAAGAAGCACCAAGAAAGTCAATGGTATGTAAAATTGAGCAAAATCAAGAACCTATGATGAATCCCATTTTAATCTTGTAGGATCATAGGAAACTAAGTATAACTCGACTTCGTTCATGGGTTCCTCTTTACACCAAAAAAATGAACGAAGGCGTGCTGTTGAACTTGATCTGTTGAATCGAGTTAGCTTTATCTTTGAAGTATCTAGTATTCCTTTTCCTTCCAAATGGTCCACCAAGTGCATGTTGGAATGGTATTCCATTAGATTGCCTTCCCTTTCTTCCTTCTCGTTTTGTACTACAAGCGCAGCAAATATGTTGAGTTTTTGGGCATCCAAGGACGGATTGTGTGTAGGTTATCTTATCGATTGATCTGAATCCAGTAGCTTTGCTTGAACCCTGTATATGTGTTAGAAAATCTACAAGATAAGTAAAAATAGTAGATTTTGACCCCCGTAAATTAAATGGGATGGTAGAATCTGGAACTCGAATCCAAAATGTTTAAATCCTAGATCCATCTCTATGGCCATCAACTCTCCAAGACTTTCACTATGTCAAGAAATAGATGTGAAAGCTGGCAGCCACCTTACAATGAATGAACAGATGGCTCACATTTTCCAATTCAATTGCGCAAGGTTAACACCTGCTGCTTAACTTGAACACCTTCTTTGAAGATGTTCCCTTGTAAGCTACTTTGTAAGGAGCTTGAGTTTCCAGATCCTGAATTCTAGGATGGTTGTTTTCTGTTGCAGCTTGTGTCTAAGCTCTGTAGAGGGACTGAACCATGAAGATGCCATTACTGTGAGATTTCCATATCATTCTGGCAGAATTACTGTTGGAGTTTTGCAAAGGCTCCCGTTCCAGTGCAGTAACATTGACTTGGGGGAATCCTTTTCAGTGCTTTTTCGATACTCCTTTTTGACTTATAGTTTGTTGTGGAAAAGATTTAATCTTTTTCATACTCGAATGGCATCATTGAGGAAGGAACTGGTTAGCGACTTTAAGAATGATATACATTAGTATATTTGGGAGATCGGGTCGAGTAGGTTCCCAGTTAGAGTGTTTTAAGGTTCCATCATATCAATCAATTAAGCATCAGTCCCAATTAGTTAGGGTCGCCTGTATGAATCATATATATCTATTTCGTTCTTCAGGCCCATTTTTGTCCAATACTAACTATTGTCTTTAACCAAATGAGGGGTTCTCTAAAACTAGAAGTTCGTTATTCTCTTACTTATCTGAACATAGAAATACTAGTATCTGATTAGAATAAAATGGCTCATTACAAACACCAGATGTAATGGAAGTGTAACATCAACTGTTACGATTTGGTATGACTTGCATAGAAGGTTTGCTACTGTTCTGTTTTGTTCTTAGTTAAGTCCCTATATATTTTAAGAGATTATAGGTCTCTTTGAGATAGTCTTACTCTAGGTAACTTTGGTTTGACTTGACCTTCTACCACATTCATTCATCATAGCGTCTCATTTATGGACCTGTTGTATTGAGGTTTACATAAAATATGATAGATCTTCTCAGAAAACCTTCTCTCAACTATTATATGTTTTACTTATGCTCTCTATTAGATATGACCATTTTTAATCTTGTGTTACTTCACATCAATCTAAGCATCCATTTTTCATACAACAATCATCTTTAAAGGCCCAACAATCACAATTACAATACATTATTTGTCTCTCAAGTGATCTAAAGAACTTGCCTTTTACTCAACTTAGAGAAATCCCTTTTTTTTTCTGTATTAAGTTGAAATATCTACAATGACATAAGCTATAACTAATTACAACTATGCAAACATTATCTTTCTGTAAAGAGAAGGAAAATGCACTTATTATATGCACATTTTTTTATCAGAATGCCAAAGTAGTGGTACTGTCCCATTGTACCTAATCACGATTATGCAAACTCAAAAAAATTTGGGGTCTGCAGAGTTGGTTAGTTGGGGTGGGCAGATATATATAGCCTGGGAGATTGAGGAAAATGTTAGGGATGGGAAAAGAGTAAGAAGAGCATAGACAAGAATTTGTCAAGTTCTTGGTGTGCAAGGTCGAAGGCATTAAGACACTGGATTAAGCTCTTTCCAGTTTGTGATCACGAATTTTTGGTGTAAGCTCATTATACAGAGACTGAAAGGAAACAAAAGAAAAAAACGAGGTCCCCACACAAATGCAGTTCATCACGTTGGATATTGTGAATGATTGTGAAAAACTGGTCTTTTTTGTTTCTACTTCAATTCAGAAAAGTTCTACTCCTGTTCTCGTGCACTTAACAATCCAACACGATATTTTTGAATTATCATTTCTATGATTTAGGGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCGGTAAGTTTATGATTTGGCAGTCTTGGTAATGCTGATTTTGATTTCCTAACTTACCAATATATAGTTTGGGCTTTTCTTTATAATTGTATGCAGTTAGAATTTGTTGGCAGTGCCTGCCTATCTGGCTTGACGTTTATCTTTTCTTGCAATATTAGTTCAGCATACCAATTAAATTATTTTTTGTTTATTTATTGTAGAGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACGGTAATGTCATCATCTCTCCTGTTAAATTTACGACAAAATGTGCTTCCCTTGACAATAAGATATCGAGTGTATTTATGGAAAAACAAGCACCAGATACTTAATTAACTTGAGTAAGAAAGGATAAAATGCAATATTGATTTTGGGTTGAGTTATTTGCATTTTGATGTACAAGTTGATTATAAATTGCCGACGGTGAATCTTAATAGCTTAGTTGGTTGGGTACCTAAACTTTCACCTTGTTGCTTTGGGTTCGATTCTGAACCTAGTAATCCCCTCTCCCATTTCCCCTTCTCCTACCCCCCCCTTTTTTTTTTAAAAAAAAGGTCATAATTGCAGACTCTCGAAGTCAAGCAATACCAAATCAAATTTGGCGAGTAGTGGGGTCCTGAGCTAAGCCTTGGAAATCGTAATGCCATAATACTTTTCAAAACCCCCCTGATCATTATCATGGTCCTACTACAGTTATTCGTGCTAAGATGAATGCCTATGTTGTAGTGATTCCACCCAAACGGTCTTTATATGATCCTTCCGGCTCTCGGCTATTCTTGTTTGACATCATTTGTGTCTCAGAAAGGGTTGAAAAGTGTAGGAAGCTATTTCTTGTAGTCATGATTTCTTCTGGTGTTTATATCTGATGTTAATTTCTGTGATAAATTCTCAGGATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTG-TTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATAAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAACTAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTGCTTAGAAGCAGATTCAAGATTTTAATTTAACGGGTTCA</genome_strand>
        <mrna_strand>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCCTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG........................................................................................................................................................................................................................................ATGGCAGATTGTTATTGGATCACTTTCTCGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAGTTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG................................................................................................................GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG.....................................................................................................................................................................................................AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCATTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTGTTTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATCAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAAATAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTACTTAGAGGCAGATTCAAGATTTTAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337724" ref_strand="+" ref_description="SGN-U337724        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | Per1-like family protein, contains Pfam profile PF04080: Per1-like | chr1:5668431-5670701 FORWARD | Aliases: None(evalue: 5e-35, score=132) genbank/nr: Per1-like(evalue: 3e-34, score=140)">
      <seq>ccctttagccataaaaattggtgaattgaagaaatatgaatccttttgctaattgataaacaaatttgagtatccttttgtgaatctaacaagatggcagattgttattggatcactttcttggtagttttattttgtcttgttggagcttttgatgctagtgctggagatgctgaccctttgtacagggcttgttttggccaatgtaaagacaccggatgtgctggagaaacatgcttcggtcattgcaatactcctttaaataattcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattctaacacaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaatgagtcttcgcccccccccccccccgcatctgatgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="110616" stop="106533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110317" g_stop="110225" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109992" g_stop="109898" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="188" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107289" g_stop="107028" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="450" r_length="262" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="0.82"/>
            <acceptor a_prob="0.890" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106915" g_stop="106833" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="534" r_length="84" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U337724" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110317" e_stop="110225"/>
          <exon e_start="109992" e_stop="109898"/>
          <exon e_start="107289" e_stop="107028"/>
          <exon e_start="106915" e_stop="106833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAGGTAATTTGCTTGTCTAACCCTTTATTTCTTCCAAATTTTCAATTTCAAATGTAAAAATCAAATCTTGGACCTTTTTTTTTTCTTCAAATCTGGGGTTTGGAGTTAAAAATAAAATCTTGGAGCCTTTTTTCTATTTGGGGTTTGGAAGATAGAAACTAGTTTATTAAATTTGTGAGATGATATGTAAGATATGAGATTAAAGATTTGATTTTTATGAATTTTGTGATATCAGATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAGGTAACATTTTCTGATAATTTTGCCTTATGGTTAATCGAGGTAATGGTAAAGTGTGCGTATACACTACCCTTCCCAGACCGCACTTGTGGGATTCCATTGGGTATTTTGTTGTTTTATCTTATGCTTAGTATTTATGAGATTTTTCATTTTCTACTTTTGATTTTTAGTAGTTTAGGCCAAAGTGTAAAGATATAATATAGATTCATTTGAATGATTTGGAATCACAATTTATATGTGCATTAGTTTTTCTTGTTTTGAAAAAGGTAGTAATGTATTATATAAGAAGCACCAAGAAAGTCAATGGTATGTAAAATTGAGCAAAATCAAGAACCTATGATGAATCCCATTTTAATCTTGTAGGATCATAGGAAACTAAGTATAACTCGACTTCGTTCATGGGTTCCTCTTTACACCAAAAAAATGAACGAAGGCGTGCTGTTGAACTTGATCTGTTGAATCGAGTTAGCTTTATCTTTGAAGTATCTAGTATTCCTTTTCCTTCCAAATGGTCCACCAAGTGCATGTTGGAATGGTATTCCATTAGATTGCCTTCCCTTTCTTCCTTCTCGTTTTGTACTACAAGCGCAGCAAATATGTTGAGTTTTTGGGCATCCAAGGACGGATTGTGTGTAGGTTATCTTATCGATTGATCTGAATCCAGTAGCTTTGCTTGAACCCTGTATATGTGTTAGAAAATCTACAAGATAAGTAAAAATAGTAGATTTTGACCCCCGTAAATTAAATGGGATGGTAGAATCTGGAACTCGAATCCAAAATGTTTAAATCCTAGATCCATCTCTATGGCCATCAACTCTCCAAGACTTTCACTATGTCAAGAAATAGATGTGAAAGCTGGCAGCCACCTTACAATGAATGAACAGATGGCTCACATTTTCCAATTCAATTGCGCAAGGTTAACACCTGCTGCTTAACTTGAACACCTTCTTTGAAGATGTTCCCTTGTAAGCTACTTTGTAAGGAGCTTGAGTTTCCAGATCCTGAATTCTAGGATGGTTGTTTTCTGTTGCAGCTTGTGTCTAAGCTCTGTAGAGGGACTGAACCATGAAGATGCCATTACTGTGAGATTTCCATATCATTCTGGCAGAATTACTGTTGGAGTTTTGCAAAGGCTCCCGTTCCAGTGCAGTAACATTGACTTGGGGGAATCCTTTTCAGTGCTTTTTCGATACTCCTTTTTGACTTATAGTTTGTTGTGGAAAAGATTTAATCTTTTTCATACTCGAATGGCATCATTGAGGAAGGAACTGGTTAGCGACTTTAAGAATGATATACATTAGTATATTTGGGAGATCGGGTCGAGTAGGTTCCCAGTTAGAGTGTTTTAAGGTTCCATCATATCAATCAATTAAGCATCAGTCCCAATTAGTTAGGGTCGCCTGTATGAATCATATATATCTATTTCGTTCTTCAGGCCCATTTTTGTCCAATACTAACTATTGTCTTTAACCAAATGAGGGGTTCTCTAAAACTAGAAGTTCGTTATTCTCTTACTTATCTGAACATAGAAATACTAGTATCTGATTAGAATAAAATGGCTCATTACAAACACCAGATGTAATGGAAGTGTAACATCAACTGTTACGATTTGGTATGACTTGCATAGAAGGTTTGCTACTGTTCTGTTTTGTTCTTAGTTAAGTCCCTATATATTTTAAGAGATTATAGGTCTCTTTGAGATAGTCTTACTCTAGGTAACTTTGGTTTGACTTGACCTTCTACCACATTCATTCATCATAGCGTCTCATTTATGGACCTGTTGTATTGAGGTTTACATAAAATATGATAGATCTTCTCAGAAAACCTTCTCTCAACTATTATATGTTTTACTTATGCTCTCTATTAGATATGACCATTTTTAATCTTGTGTTACTTCACATCAATCTAAGCATCCATTTTTCATACAACAATCATCTTTAAAGGCCCAACAATCACAATTACAATACATTATTTGTCTCTCAAGTGATCTAAAGAACTTGCCTTTTACTCAACTTAGAGAAATCCCTTTTTTTTTCTGTATTAAGTTGAAATATCTACAATGACATAAGCTATAACTAATTACAACTATGCAAACATTATCTTTCTGTAAAGAGAAGGAAAATGCACTTATTATATGCACATTTTTTTATCAGAATGCCAAAGTAGTGGTACTGTCCCATTGTACCTAATCACGATTATGCAAACTCAAAAAAATTTGGGGTCTGCAGAGTTGGTTAGTTGGGGTGGGCAGATATATATAGCCTGGGAGATTGAGGAAAATGTTAGGGATGGGAAAAGAGTAAGAAGAGCATAGACAAGAATTTGTCAAGTTCTTGGTGTGCAAGGTCGAAGGCATTAAGACACTGGATTAAGCTCTTTCCAGTTTGTGATCACGAATTTTTGGTGTAAGCTCATTATACAGAGACTGAAAGGAAACAAAAGAAAAAAACGAGGTCCCCACACAAATGCAGTTCATCACGTTGGATATTGTGAATGATTGTGAAAAACTGGTCTTTTTTGTTTCTACTTCAATTCAGAAAAGTTCTACTCCTGTTCTCGTGCACTTAACAATCCAACACGATATTTTTGAATTATCATTTCTATGATTTAGGGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGC-CTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTA</genome_strand>
        <mrna_strand>CCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG........................................................................................................................................................................................................................................ATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTTTTGGCCAATGTAAAGACACCGGATGTGCTGGAGAAACATGCTTCGGTCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCTAACACAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAATGAGTCTTCGCCCCCCCC................................................................................................................CCCCCCCGCATCTGATGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334524" ref_strand="+" ref_description="SGN-U334524        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G74670.1 | Symbol: None | gibberellin-responsive protein, putative, similar to SP:P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana} GASA4; contains Pfam profile PF02704: Gibberellin regulated protein | chr1:28056960-28057810 FORWARD | Aliases: F1M20.35, F1M20_35 (evalue: 3e-08, score=56.2) genbank/nr: beta-galactosidase(evalue: 6e-13, score=77.8)">
      <seq>tttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttggggtatcatggtgtctgaactgagttgtaatactggagcgatatatgatctatggattaagaatcatataaccggtttccacttgctccgaaaagaaatggtattggaatccttcttttttataaccaaactataataataacttatttattggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="114374" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114074" g_stop="113660" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U334524" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114074" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGGGGTATCATGGTGTCTGAACTGAGTTGTAATACTGGAGCGATATATGATCTATGGATTAAGAATCATATAACCGGTTTCCACTTGCTCCGAAAAGAAATGGTATTGGAATCCTTCTTTTTTATAACCAAACTATAATAATAACTTATTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334522" ref_strand="+" ref_description="SGN-U334522        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G02885.1 | Symbol: None | gibberellin-regulated protein 5 (GASA5) / gibberellin-responsive protein 5, identical to GASA5 (Arabidopsis thaliana) GI:1289320 | chr3:638111-639059 REVERSE | Aliases: None (evalue: 2e-26, score=116) genbank/nr: gi|1351018|sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132) gi|7447293|pir||S43910 gibberellin-regulated protein RSI-1 precursor - tomato gi|405585|gb|AAA20129.1| RSI-1 protein gi|405587|gb|AAA20130.1| RSI-1 protein(evalue: 6e-43, score=177)">
      <seq>tttatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcctgcccttgttacaacaattggaaaactcaagaaaggaaaacttaatggccctaattaattaaaatattaataattagggaaatttatcttttttttcccaaaatttatgggaaaaaattaagagtactatagctatatgggcatattggggttttgtattgcataaaattgatttggagtaattttgatgtaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115389" stop="113539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115089" g_stop="114926" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="189" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113839" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="515" r_length="326" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U334522" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115089" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATC-TTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATT-GTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTT</genome_strand>
        <mrna_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCCTGCCCTTGTTACAACAATTGGAAAACTCAAGAAAGGAAAACTTAATGGCCCTAATTAATTAAAATATTAATAATTAGGGAAATTTATCTTTTTTTTCCCAAAATTTATGGGAAAAAATTAAGAGTACTATAGCTATATGGGCATATTGGGGTTTTGTATTGCATAAAATTGATTTGGAGTAATTTTGATGTAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334523" ref_strand="+" ref_description="SGN-U334523        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G02885.1 | Symbol: None | gibberellin-regulated protein 5 (GASA5) / gibberellin-responsive protein 5, identical to GASA5 (Arabidopsis thaliana) GI:1289320 | chr3:638111-639059 REVERSE | Aliases: None (evalue: 5e-30, score=128) genbank/nr: gi|1351018|sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132) gi|7447293|pir||S43910 gibberellin-regulated protein RSI-1 precursor - tomato gi|405585|gb|AAA20129.1| RSI-1 protein gi|405587|gb|AAA20130.1| RSI-1 protein(evalue: 4e-41, score=171)">
      <seq>tttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgaggtaaatacgtttaacatttgacgtataaatgtaatttcgaatttatatgcaccttatttttctatacaatatgattaactgattactcttcgatctatgtgactacaccattaatctcaattaattattacataaaaatataatgtacctttttttttttggaatttatgtgtctttttcttcatttttacagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115337" stop="113788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115037" g_stop="114708" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114162" g_stop="114088" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="405" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-U334523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115037" e_stop="114708"/>
          <exon e_start="114162" e_stop="114088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAAT</genome_strand>
        <mrna_strand>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13385" PGL_stop="8422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13385" e_stop="12976"/>
            <exon e_start="8543" e_stop="8422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13385" e_stop="12976" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12975" i_stop="8544" i_length="4432"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8543" e_stop="8422" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13385" stop="12976"/>
              <exon start="8543" stop="8422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGCAGTCACTTGCCTTATCCAATCAGTCAGAAGGATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTCTTGCTGGATTGTGGGATATATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATAAAGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGCTGTATAAAGATGAATCTAAGCTCAAGGCCCTGTGTGAAATGACGGGAAATAATGATGAACCAACAGAACACTGCATCGTGAAAAGGAGGGGTCAGTATGATGATGCCAGATGCTCTTCTTCTAAGAAACAAAGGTCACAGCTCTAGTATTTGTCTTTGAGAATCTGCTGCAACAACCAGTCTCTTCACAAACTTTGCAGCTCTTGTCTCTCTGCTTCTGCCGAGCCATG : AAAGAAGTAGCTATGGATGGTTATGCAAAAATGAATGCTGCGATCGCTAAGGCTGAAAAGGAAGAGCGGGAGTGGGATGAGATTGATCGAATGCCGTTTGGACAGCGAATGAACTCACTGAT</gDNA_template>
            <first_frame> T  Q  S  L  A  L  S  N  Q  S  E  G  F  P  E  S  A  I  H  F  F  L  V  P  L  A  G  L  W  D  I  S  K  A  N  G  K  T  P  N  D  Y  R  H  I  K  L  S  F  S  E  E  L  K  E  F  G  L  R  L  L  Y  K  D  E  S  K  L  K  A  L  C  E  M  T  G  N  N  D  E  P  T  E  H  C  I  V  K  R  R  G  Q  Y  D  D  A  R  C  S  S  S  K  K  Q  R  S  Q  L  *  Y  L  S  L  R  I  C  C  N  N  Q  S  L  H  K  L  C  S  S  C  L  S  A  S  A  E  P  * :   K  K  *  L  W  M  V  M  Q  K  *  M  L  R  S  L  R  L  K  R  K  S  G  S  G  M  R  L  I  E  C  R  L  D  S  E  *  T  H  *  </first_frame>
            <second_frame>  R  S  H  L  P  Y  P  I  S  Q  K  D  F  Q  N  L  L  F  I  F  S  W  Y  L  L  L  D  C  G  I  Y  L  R  Q  T  E  K  H  Q  M  I  I  G  T  *  S  Y  L  F  R  K  S  *  R  S  L  D  F  V  C  C  I  K  M  N  L  S  S  R  P  C  V  K  *  R  E  I  M  M  N  Q  Q  N  T  A  S  *  K  G  G  V  S  M  M  M  P  D  A  L  L  L  R  N  K  G  H  S  S  S  I  C  L  *  E  S  A  A  T  T  S  L  F  T  N  F  A  A  L  V  S  L  L  L  P  S  H   : E  R  S  S  Y  G  W  L  C  K  N  E  C  C  D  R  *  G  *  K  G  R  A  G  V  G  *  D  *  S  N  A  V  W  T  A  N  E  L  T  D </second_frame>
            <third_frame>   A  V  T  C  L  I  Q  S  V  R  R  I  S  R  I  C  Y  S  F  F  L  G  T  S  C  W  I  V  G  Y  I  *  G  K  R  K  N  T  K  *  L  *  A  H  K  V  I  F  F  G  R  V  E  G  V  W  T  S  F  A  V  *  R  *  I  *  A  Q  G  P  V  *  N  D  G  K  *  *  *  T  N  R  T  L  H  R  E  K  E  G  S  V  *  *  C  Q  M  L  F  F  *  E  T  K  V  T  A  L  V  F  V  F  E  N  L  L  Q  Q  P  V  S  S  Q  T  L  Q  L  L  S  L  C  F  C  R  A  M  :  K  E  V  A  M  D  G  Y  A  K  M  N  A  A  I  A  K  A  E  K  E  E  R  E  W  D  E  I  D  R  M  P  F  G  Q  R  M  N  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13385" stop="13059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQSLALSNQSEGFPESAIHFFLVPLAGLWDISKANGKTPNDYRHIKLSFSEELKEFGLRLLYKDESKLKALCEMTGNNDEPTEHCIVKRRGQYDDARCSSSKKQRSQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13080" stop="12976"/>
                    <exon start="8543" stop="8424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKVTALVFVFENLLQQPVSSQTLQLLSLCFCRAMKEVAMDGYAKMNAAIAKAEKEEREWDEIDRMPFGQRMNSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15737" PGL_stop="13641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15737" e_stop="15659"/>
            <exon e_start="15233" e_stop="14958"/>
            <exon e_start="14564" e_stop="13641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.614" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.834" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15737" e_stop="15659" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.614" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15658" i_stop="15234" i_length="425"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="15233" e_stop="14958" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.834">
            <gDNA_intron_boundary i_start="14957" i_stop="14565" i_length="393"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14564" e_stop="13641" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15737" stop="15659"/>
              <exon start="15233" stop="14958"/>
              <exon start="14564" stop="13641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327908" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCAAAAGGAAAGGGGAGAACTCAGCAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAA : GGGACCAAGGCAATCGAAACAATCTGGATACCAGAAATTCAAGACCTAAGCTTTAAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACCGGAACAAAG : AAATTTCCTTTTCTACGGAGGCTGGTTCTCAGCCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGTTCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCGAGAGTTTTAGCTATGTTTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCAGAGATAAAGATTCAAGTGCAACGTTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCACCAGTCTTGTCTTACAGAACTAGATTTGATTGGCATGCAAAACCTTGCAACACTTCCAAGCAGCATTGGCGAGTTAAAACGTTTGGTAAAGCTAAAAGTGTCCGACTGCTCAAAACTCAAAATCTTGCCAAAAGAGATAGGTGATTTAGAAAACCTGGAGATACTTGAGGCCAGATGTACTCTAATCTCACAACCTCCGTCTTCCATCGTCCGCTTGAACAGGCTTAAAGTTTTGACTTTTGCAAAACAAAAATCAGAAGTAGGCCTCGAAAACGGAGTGTACTTTTCATTCCCTCGAGTGAATGAAGGATTGCGCTCATTGGAACATCTGGATCTCAGTTACTGCAATCTAATAAATGAAGGACTTCCGATAGACATTGGATGCCTACACTGTTTGAAAGCGTTGAATCTGAGGGGAAATAATTTCGAGCATTTGCCTCAAAGCATAGCCCGACTTTGTGCTCTTCAATCCTTGGACTTATTAGATTGCAAGAAGCTTACACAACTGCCAGAATTTCCACGGCAATTAGACACAATATACGCCGATTGGAGCAATGATTCAATCTGTAAT</gDNA_template>
            <first_frame> I  A  K  G  K  G  R  T  Q  Q  T  M  A  H  S  R  F  R  K  I  L  K  C  K  N  T   : R  D  Q  G  N  R  N  N  L  D  T  R  N  S  R  P  K  L  *  K  K  G  H  E  R  R  G  K  A  *  D  I  I  H  Q  W  F  S  Y  T  *  *  L  Q  R  S  V  P  S  Q  Q  L  A  L  V  R  L  L  *  V  S  L  G  I  I  A  S  Q  I  *  S  *  H  A  C  S  S  *  S  P  A  E  F  T  V  S  F  M  D  R  N  K   : E  I  S  F  S  T  E  A  G  S  Q  P  L  C  *  L  E  A  N  T  R  F  L  G  Y  A  K  F  G  V  F  G  S  K  R  V  Y  Q  S  *  R  G  S  P  F  L  E  M  F  Q  K  T  Q  *  V  K  F  E  R  L  *  K  P  R  E  F  *  L  C  L  L  G  I  S  *  M  S  I  S  T  R  L  L  *  F  R  E  I  P  E  D  P  G  K  I  E  A  R  D  K  D  S  S  A  T  F  W  D  K  E  T  T  I  S  Y  Y  S  A  P  V  L  S  Y  R  T  R  F  D  W  H  A  K  P  C  N  T  S  K  Q  H  W  R  V  K  T  F  G  K  A  K  S  V  R  L  L  K  T  Q  N  L  A  K  R  D  R  *  F  R  K  P  G  D  T  *  G  Q  M  Y  S  N  L  T  T  S  V  F  H  R  P  L  E  Q  A  *  S  F  D  F  C  K  T  K  I  R  S  R  P  R  K  R  S  V  L  F  I  P  S  S  E  *  R  I  A  L  I  G  T  S  G  S  Q  L  L  Q  S  N  K  *  R  T  S  D  R  H  W  M  P  T  L  F  E  S  V  E  S  E  G  K  *  F  R  A  F  A  S  K  H  S  P  T  L  C  S  S  I  L  G  L  I  R  L  Q  E  A  Y  T  T  A  R  I  S  T  A  I  R  H  N  I  R  R  L  E  Q  *  F  N  L  *  </first_frame>
            <second_frame>  L  Q  K  E  R  G  E  L  S  R  L  W  L  T  Q  D  F  E  K  F  S  N  A  K  I  Q  :  G  T  K  A  I  E  T  I  W  I  P  E  I  Q  D  L  S  F  K  K  K  A  M  K  D  V  E  K  L  R  I  L  Y  I  N  G  F  H  T  H  D  S  S  N  D  Q  Y  L  P  S  N  L  R  W  F  D  C  C  K  Y  P  W  E  S  L  P  A  K  F  D  P  D  M  L  V  H  L  D  L  Q  Q  S  S  L  F  H  L  W  T  G  T  K  :  K  F  P  F  L  R  R  L  V  L  S  R  C  A  N  L  R  R  T  P  D  F  S  D  M  P  N  L  E  Y  L  G  L  K  E  C  T  N  L  K  E  V  H  H  S  L  R  C  S  K  K  L  N  K  L  N  L  R  D  C  K  S  L  E  S  F  S  Y  V  C  W  E  S  L  E  C  L  Y  L  Q  G  C  S  N  L  E  K  F  P  K  I  R  G  K  L  K  P  E  I  K  I  Q  V  Q  R  S  G  I  R  K  L  P  S  A  I  I  Q  H  Q  S  C  L  T  E  L  D  L  I  G  M  Q  N  L  A  T  L  P  S  S  I  G  E  L  K  R  L  V  K  L  K  V  S  D  C  S  K  L  K  I  L  P  K  E  I  G  D  L  E  N  L  E  I  L  E  A  R  C  T  L  I  S  Q  P  P  S  S  I  V  R  L  N  R  L  K  V  L  T  F  A  K  Q  K  S  E  V  G  L  E  N  G  V  Y  F  S  F  P  R  V  N  E  G  L  R  S  L  E  H  L  D  L  S  Y  C  N  L  I  N  E  G  L  P  I  D  I  G  C  L  H  C  L  K  A  L  N  L  R  G  N  N  F  E  H  L  P  Q  S  I  A  R  L  C  A  L  Q  S  L  D  L  L  D  C  K  K  L  T  Q  L  P  E  F  P  R  Q  L  D  T  I  Y  A  D  W  S  N  D  S  I  C  N </second_frame>
            <third_frame>   C  K  R  K  G  E  N  S  A  D  Y  G  S  L  K  I  S  K  N  S  Q  M  Q  K  Y  K :   G  P  R  Q  S  K  Q  S  G  Y  Q  K  F  K  T  *  A  L  K  K  R  P  *  K  T  W  K  S  L  G  Y  Y  T  S  M  V  F  I  H  M  I  A  P  T  I  S  T  F  P  A  T  C  V  G  S  T  V  V  S  I  L  G  N  H  C  Q  P  N  L  I  L  T  C  L  F  I  L  I  S  S  R  V  H  C  F  I  Y  G  P  E  Q  R :   N  F  L  F  Y  G  G  W  F  S  A  A  V  L  T  *  G  E  H  Q  I  S  R  I  C  Q  I  W  S  I  W  V  *  K  S  V  P  I  L  K  R  F  T  I  P  *  D  V  P  K  N  S  I  S  *  I  *  E  T  V  K  A  S  R  V  L  A  M  F  A  G  N  L  L  N  V  Y  I  Y  K  V  A  L  I  *  R  N  S  R  R  S  G  E  N  *  S  Q  R  *  R  F  K  C  N  V  L  G  *  G  N  Y  H  Q  L  L  F  S  T  S  L  V  L  Q  N  *  I  *  L  A  C  K  T  L  Q  H  F  Q  A  A  L  A  S  *  N  V  W  *  S  *  K  C  P  T  A  Q  N  S  K  S  C  Q  K  R  *  V  I  *  K  T  W  R  Y  L  R  P  D  V  L  *  S  H  N  L  R  L  P  S  S  A  *  T  G  L  K  F  *  L  L  Q  N  K  N  Q  K  *  A  S  K  T  E  C  T  F  H  S  L  E  *  M  K  D  C  A  H  W  N  I  W  I  S  V  T  A  I  *  *  M  K  D  F  R  *  T  L  D  A  Y  T  V  *  K  R  *  I  *  G  E  I  I  S  S  I  C  L  K  A  *  P  D  F  V  L  F  N  P  W  T  Y  *  I  A  R  S  L  H  N  C  Q  N  F  H  G  N  *  T  Q  Y  T  P  I  G  A  M  I  Q  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15736" stop="15659"/>
                    <exon start="15233" stop="14958"/>
                    <exon start="14564" stop="13641"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1278</number_coding_nucleotides>
                  <number_encoded_amino_acids>426</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQKERGELSRLWLTQDFEKFSNAKIQGTKAIETIWIPEIQDLSFKKKAMKDVEKLRILYINGFHTHDSSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLVLSRCANLRRTPDFSDMPNLEYLGLKECTNLKEVHHSLRCSKKLNKLNLRDCKSLESFSYVCWESLECLYLQGCSNLEKFPKIRGKLKPEIKIQVQRSGIRKLPSAIIQHQSCLTELDLIGMQNLATLPSSIGELKRLVKLKVSDCSKLKILPKEIGDLENLEILEARCTLISQPPSSIVRLNRLKVLTFAKQKSEVGLENGVYFSFPRVNEGLRSLEHLDLSYCNLINEGLPIDIGCLHCLKALNLRGNNFEHLPQSIARLCALQSLDLLDCKKLTQLPEFPRQLDTIYADWSNDSICN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22762" PGL_stop="22570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22762" e_stop="22570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="22762" e_stop="22570" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22762" stop="22570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCTCAAGTGGATGAAGGGTTACGGTCATTGGAACATCTAGATCTCAGTTACTGCAATCTAATAGATGGAGGACTTCCAGAAGATATTGGTTGCCTACGCTCTTTGAAAGAGTTGTATCTCTGTGGAAATAATTTCGAGCATTTGCCTCGAAGCATAGCACAACTTGGCGCTCTTCGATTCTTGAACTTATC</gDNA_template>
            <first_frame> S  L  K  W  M  K  G  Y  G  H  W  N  I  *  I  S  V  T  A  I  *  *  M  E  D  F  Q  K  I  L  V  A  Y  A  L  *  K  S  C  I  S  V  E  I  I  S  S  I  C  L  E  A  *  H  N  L  A  L  F  D  S  *  T  Y  </first_frame>
            <second_frame>  P  S  S  G  *  R  V  T  V  I  G  T  S  R  S  Q  L  L  Q  S  N  R  W  R  T  S  R  R  Y  W  L  P  T  L  F  E  R  V  V  S  L  W  K  *  F  R  A  F  A  S  K  H  S  T  T  W  R  S  S  I  L  E  L  I </second_frame>
            <third_frame>   P  Q  V  D  E  G  L  R  S  L  E  H  L  D  L  S  Y  C  N  L  I  D  G  G  L  P  E  D  I  G  C  L  R  S  L  K  E  L  Y  L  C  G  N  N  F  E  H  L  P  R  S  I  A  Q  L  G  A  L  R  F  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0027B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37998" PGL_stop="38502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37998" e_stop="38502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37998" e_stop="38502" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37998" stop="38502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</gDNA_template>
            <first_frame> V  S  R  C  Y  F  T  V  F  *  Q  F  G  C  H  R  W  S  S  W  R  W  S  H  Q  K  W  W  Y  K  R  C  Y  Y  S  C  T  *  W  H  K  W  *  G  K  Y  Y  Y  Y  *  C  L  L  I  I  I  N  *  L  C  *  E  *  *  I  W  Y  L  Q  N  G  G  Y  I  R  V  S  K  R  *  Y  S  C  *  *  W  W  *  *  *  *  R  C  N  R  W  C  *  P  C  *  N  K  *  *  Y  *  *  L  S  F  Y  V  L  G  K  R  V  C  A  G  D  D  I  P  T  H  I  I  I  L  L  F  D  F  I  I  I  V  I  Y  F  V  S  I  I  V  L  S  I  L  H  L  N  R  S  T  F  L  F  D  I  N  L  I  I  L  Y  </first_frame>
            <second_frame>  C  R  A  V  T  S  P  S  F  D  N  L  A  A  T  A  G  Q  V  G  G  G  A  T  K  S  G  G  T  K  D  V  T  I  V  V  H  D  G  I  N  G  K  V  N  T  T  T  T  S  V  Y  S  S  S  S  T  S  Y  V  E  N  N  K  Y  G  I  C  K  M  A  V  T  L  E  S  V  N  D  D  I  R  V  N  D  G  G  S  D  N  N  D  A  T  G  G  A  S  H  A  K  I  S  N  S  I  N  S  *  A  S  M  C  W  E  R  G  F  V  R  G  M  I  S  L  L  I  L  L  Y  Y  C  S  I  L  L  L  L  L  Y  T  L  F  Q  L  S  Y  Y  Q  F  F  I  *  T  D  R  L  F  Y  L  I  S  I  L  L  Y  Y  T </second_frame>
            <third_frame>   V  A  L  L  L  H  R  L  L  T  I  W  L  P  P  L  V  K  L  A  V  E  P  P  K  V  V  V  Q  K  M  L  L  *  L  Y  M  M  A  *  M  V  R  *  I  L  L  L  L  V  F  T  H  H  H  Q  L  A  M  L  R  I  I  N  M  V  S  A  K  W  R  L  H  *  S  Q  *  T  M  I  F  V  L  M  M  V  V  V  I  I  T  M  Q  P  V  V  L  A  M  L  K  *  V  I  V  L  I  A  K  L  L  C  V  G  K  E  G  L  C  G  G  *  Y  P  Y  S  Y  Y  Y  T  I  V  R  F  Y  Y  Y  C  Y  I  L  C  F  N  Y  R  I  I  N  S  S  F  E  Q  I  D  F  F  I  *  Y  Q  S  Y  Y  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37999" stop="38325"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRAVTSPSFDNLAATAGQVGGGATKSGGTKDVTIVVHDGINGKVNTTTTSVYSSSSTSYVENNKYGICKMAVTLESVNDDIRVNDGGSDNNDATGGASHAKISNSINS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="52365" PGL_stop="59288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52365" e_stop="52583"/>
            <exon e_start="53532" e_stop="53965"/>
            <exon e_start="55496" e_stop="55554"/>
            <exon e_start="55688" e_stop="55816"/>
            <exon e_start="57764" e_stop="57899"/>
            <exon e_start="58674" e_stop="59288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.852" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.277" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="52365" e_stop="52583" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.852" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52584" i_stop="53531" i_length="948"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53532" e_stop="53965" e_length="434"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="53966" i_stop="55495" i_length="1530"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55496" e_stop="55554" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.277">
            <gDNA_intron_boundary i_start="55555" i_stop="55687" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55688" e_stop="55816" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55817" i_stop="57763" i_length="1947"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57764" e_stop="57899" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57900" i_stop="58673" i_length="774"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="58674" e_stop="59288" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52365" stop="52583"/>
              <exon start="53532" stop="53965"/>
              <exon start="55496" stop="55554"/>
              <exon start="55688" stop="55816"/>
              <exon start="57764" stop="57899"/>
              <exon start="58674" stop="59288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCGTTGGGTGTGGAAACGTTGTACTTACATAGGCAATGATGACAGTGCCACGTGGCCTCCAGCAACCTATGATGAATTTGAACCTATTCCTCGTCTTTGCCGTACAATTCTTGCTGTTTATGAAGATGACCTTCATAACCCAAAGTTTCCACCTGAAGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCG : GTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTAGGGGTTTAAATTTGGTTAAAGAAAGTGATTATAAAGTCTTGATGGATAATAAGCTTGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAG : GATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTG : TTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAG : ATGTGGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACAAAGAGAATCAGAGAAGGCGTTAGCG : AGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGCGAGGAGTAACAGAGACGGCTTTTCTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTCTTTGAAGGTGCTCTCTCTCTCTTCTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTCTTGTTCAATTATTTGTACATTTTTCTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTCTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAGTTTTTGCTCCT</gDNA_template>
            <first_frame> C  V  G  C  G  N  V  V  L  T  *  A  M  M  T  V  P  R  G  L  Q  Q  P  M  M  N  L  N  L  F  L  V  F  A  V  Q  F  L  L  F  M  K  M  T  F  I  T  Q  S  F  H  L  K  E  D  I  G  L  T  L  I  G  W  *  S  V  *  R  I  E  T  H  S  :  V  M  L  H  L  I  *  F  T  L  I  M  S  T  M  R  L  L  *  P  L  G  V  *  I  W  L  K  K  V  I  I  K  S  *  W  I  I  S  L  G  S  R  C  L  M  V  G  M  C  I  M  G  C  *  R  Q  Q  F  G  C  *  I  K  N  P  R  L  *  K  G  F  G  L  R  M  G  R  V  T  G  *  Y  L  L  D  I  L  W  V  L  E  L  H  H  C  *  L  *  L  R  R  I  T  G  I  D  *  G  V  S  Q  G  V  H  S  V  A  M  L  L  L  L  L  G  V  C  H  S  I  W  L  L  N  M  L  M  L  S  T  Q  W  F  C  R :   M  I  S  Y  H  E  L  P  P  P  W  K  I  Y  S  N  P  S  S   : V  Y  H  A  C  Y  F  W  C  A  *  E  I  P  S  Y  Q  K  V  G  N  S  E  I  Q  E  D  Y  M  H  L  V  E  C  I  T  L  L  K  E  N  F  A   : D  V  G  D  S  L  Q  M  L  E  L  P  S  Q  L  M  E  D  L  S  I  L  C  C  H  A  M  Q  H  L  I  T  E  L  F  G  Y  K  E  N  Q  R  R  R  *  R :   D  S  R  R  L  Q  V  L  R  H  R  Q  L  H  H  R  C  R  E  L  K  G  S  I  P  *  K  K  N  T  R  K  H  *  K  E  L  S  L  *  I  F  H  T  P  C  Q  Q  T  Q  M  R  N  Y  R  Y  T  K  R  T  T  Q  G  E  E  *  Q  R  R  L  F  L  *  K  M  H  P  Q  V  Q  A  I  P  P  M  Q  E  L  T  G  T  M  *  L  R  S  F  S  R  K  M  K  R  G  S  *  H  *  T  K  K  Q  V  V  V  L  N  D  N  P  L  *  R  C  S  L  S  L  L  I  F  F  F  L  S  N  F  F  L  *  W  L  K  K  S  I  I  L  V  Q  L  F  V  H  F  S  Y  V  K  Q  Y  I  *  I  R  M  F  N  F  *  S  P  K  E  G  N  I  E  T  E  R  N  E  K  W  L  *  L  H  F  Y  L  F  C  L  *  N  V  F  A  *  F  L  L   </first_frame>
            <second_frame>  A  L  G  V  E  T  L  Y  L  H  R  Q  *  *  Q  C  H  V  A  S  S  N  L  *  *  I  *  T  Y  S  S  S  L  P  Y  N  S  C  C  L  *  R  *  P  S  *  P  K  V  S  T  *  R  R  I  *  A  *  R  *  L  G  G  E  A  C  D  V  S  R  H  T  R :   *  C  S  T  L  F  D  L  P  *  S  *  A  P  *  D  C  C  S  H  *  G  F  K  F  G  *  R  K  *  L  *  S  L  D  G  *  *  A  W  E  A  D  V  *  W  W  V  C  A  S  W  V  V  E  G  S  N  L  D  V  E  *  R  I  R  D  F  E  K  A  L  G  *  E  W  E  E  L  Q  D  D  I  C  W  T  F  F  G  F  W  S  C  I  I  V  D  Y  N  C  G  E  S  R  G  *  I  R  G  Y  P  K  E  F  T  P  L  L  C  C  C  S  C  *  V  Y  V  T  Q  F  G  C  *  I  C  *  C  Y  P  L  S  G  F  A   : G  *  F  L  T  T  N  S  H  P  P  G  R  Y  I  Q  I  R  L  L  :  F  T  M  L  V  I  F  G  V  L  E  R  Y  L  H  T  R  R  *  E  T  Q  R  S  K  K  I  I  C  T  W  S  N  V  S  R  C  *  K  K  I  L  Q  :  M  W  E  I  P  S  R  C  *  N  C  H  P  S  *  W  K  I  *  A  Y  C  A  V  M  Q  C  N  I  *  S  R  N  Y  L  D  T  K  R  I  R  E  G  V  S   : E  T  Q  G  G  Y  K  C  *  G  T  D  S  S  T  T  G  A  E  N  *  K  A  A  Y  P  R  K  R  T  Q  E  S  T  R  K  S  C  H  F  E  Y  S  T  R  R  A  N  R  H  R  *  G  T  I  G  T  Q  R  G  R  L  R  A  R  S  N  R  D  G  F  S  Y  R  R  C  I  H  K  Y  K  P  F  H  R  C  K  N  *  L  E  R  C  S  *  E  A  F  R  A  R  *  N  G  E  V  D  I  E  Q  R  S  K  L  *  Y  *  M  T  T  L  F  E  G  A  L  S  L  F  L  F  F  F  F  F  Q  I  F  F  C  D  G  *  R  K  V  L  F  L  F  N  Y  L  Y  I  F  L  M  *  N  N  I  Y  E  L  E  C  S  I  S  K  A  P  K  R  G  I  *  K  Q  K  E  M  K  S  G  C  N  C  I  F  I  C  F  V  C  E  M  F  L  H  S  F  C  S  </second_frame>
            <third_frame>   R  W  V  W  K  R  C  T  Y  I  G  N  D  D  S  A  T  W  P  P  A  T  Y  D  E  F  E  P  I  P  R  L  C  R  T  I  L  A  V  Y  E  D  D  L  H  N  P  K  F  P  P  E  G  G  Y  R  L  N  A  D  W  V  V  K  R  V  T  Y  R  D  T  L   : G  N  A  P  P  Y  L  I  Y  L  D  H  E  H  H  E  I  V  V  A  I  R  G  L  N  L  V  K  E  S  D  Y  K  V  L  M  D  N  K  L  G  K  Q  M  F  D  G  G  Y  V  H  H  G  L  L  K  A  A  I  W  M  L  N  K  E  S  E  T  L  K  R  L  W  V  E  N  G  K  S  Y  R  M  I  F  V  G  H  S  L  G  S  G  V  A  S  L  L  T  I  I  A  A  N  H  G  D  R  L  G  G  I  P  R  S  S  L  R  C  Y  A  V  A  P  A  R  C  M  S  L  N  L  A  V  K  Y  A  D  V  I  H  S  V  V  L  Q  :  D  D  F  L  P  R  T  P  T  P  L  E  D  I  F  K  S  V  F  C :   L  P  C  L  L  F  L  V  C  L  R  D  T  F  I  P  E  G  R  K  L  R  D  P  R  R  L  Y  A  P  G  R  M  Y  H  V  V  E  R  K  F  C  R :   C  G  R  F  P  P  D  V  R  T  A  I  P  V  D  G  R  F  E  H  I  V  L  S  C  N  A  T  S  D  H  G  I  I  W  I  Q  R  E  S  E  K  A  L  A  :  R  L  K  E  A  T  S  A  E  A  P  T  A  P  P  P  V  Q  R  I  E  R  Q  H  T  L  E  K  E  H  K  K  A  L  E  R  A  V  T  L  N  I  P  H  A  V  P  T  D  T  D  E  E  L  S  V  H  K  E  D  D  S  G  R  G  V  T  E  T  A  F  L  I  E  D  A  S  T  S  T  S  H  S  T  D  A  R  T  N  W  N  D  V  V  E  K  L  F  A  Q  D  E  T  G  K  L  T  L  N  K  E  A  S  C  S  T  E  *  Q  P  S  L  K  V  L  S  L  S  S  Y  F  F  F  S  F  K  F  F  F  V  M  V  E  E  K  Y  Y  S  C  S  I  I  C  T  F  F  L  C  K  T  I  Y  M  N  *  N  V  Q  F  L  K  P  Q  R  G  E  Y  R  N  R  K  K  *  K  V  V  V  I  A  F  L  F  V  L  F  V  K  C  F  C  I  V  F  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52367" stop="52583"/>
                    <exon start="53532" stop="53965"/>
                    <exon start="55496" stop="55554"/>
                    <exon start="55688" stop="55816"/>
                    <exon start="57764" stop="57899"/>
                    <exon start="58674" stop="59027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWVWKRCTYIGNDDSATWPPATYDEFEPIPRLCRTILAVYEDDLHNPKFPPEGGYRLNADWVVKRVTYRDTLGNAPPYLIYLDHEHHEIVVAIRGLNLVKESDYKVLMDNKLGKQMFDGGYVHHGLLKAAIWMLNKESETLKRLWVENGKSYRMIFVGHSLGSGVASLLTIIAANHGDRLGGIPRSSLRCYAVAPARCMSLNLAVKYADVIHSVVLQDDFLPRTPTPLEDIFKSVFCLPCLLFLVCLRDTFIPEGRKLRDPRRLYAPGRMYHVVERKFCRCGRFPPDVRTAIPVDGRFEHIVLSCNATSDHGIIWIQRESEKALARLKEATSAEAPTAPPPVQRIERQHTLEKEHKKALERAVTLNIPHAVPTDTDEELSVHKEDDSGRGVTETAFLIEDASTSTSHSTDARTNWNDVVEKLFAQDETGKLTLNKEASCSTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="65637" PGL_stop="60272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65637" e_stop="65443"/>
            <exon e_start="64625" e_stop="64375"/>
            <exon e_start="62969" e_stop="62823"/>
            <exon e_start="62737" e_stop="62669"/>
            <exon e_start="61407" e_stop="61223"/>
            <exon e_start="61031" e_stop="60981"/>
            <exon e_start="60784" e_stop="60272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.202" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.365" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65637" e_stop="65443" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.202" acc_prob="0.974">
            <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64625" e_stop="64375" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.365">
            <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62969" e_stop="62823" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.858" acc_prob="0.900">
            <gDNA_intron_boundary i_start="62822" i_stop="62738" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62737" e_stop="62669" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62668" i_stop="61408" i_length="1261"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61407" e_stop="61223" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61222" i_stop="61032" i_length="191"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61031" e_stop="60981" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60980" i_stop="60785" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="60784" e_stop="60272" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65637" stop="65443"/>
              <exon start="64625" stop="64375"/>
              <exon start="62969" stop="62823"/>
              <exon start="62737" stop="62669"/>
              <exon start="61407" stop="61223"/>
              <exon start="61031" stop="60981"/>
              <exon start="60784" stop="60272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG : ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAG : ACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGG : GAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGT : GGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGTTCCAACCCAGAAATTCCTTTGTCAGCTCGTGTAAATGTAGTTGGAGGAACCAACCGGAGGAGGACTGTGGTTATGGC : GCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAG : TCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCCATCTTCCTATGCAACTGTAGTTCTGCTTAAATTATGCATAAGGTAATTAGATTGTTCAATTGTACTCACATCCATTTGAGGTGATAAAGTTCATTGAGTGAAAACTTTATATTGCAAAACA</gDNA_template>
            <first_frame> F  S  N  S  L  L  F  S  E  T  L  T  T  F  F  L  L  S  I  K  K  S  S  H  Q  W  R  L  Y  L  K  S  *  K  F  L  H  N  Y  S  F  S  C  I  S  H  H  I  Q  R  K  V  A  D  L  Y  V  R  G  M  F  L  H  I  L  :  I  G  F  S  *  N  F  P  S  L  L  T  S  S  W  L  H  W  I  *  P  W  M  I  *  *  K  V  G  E  I  L  R  G  V  V  G  V  K  A  G  P  D  A  E  E  G  Q  G  V  H  L  E  V  D  H  L  E  V  E  G  Q  Q  G  L  L  V  E  G  H  L  A  *  M  L  G  H  Q  P  T  P  L  P  R :   L  S  A  E  P  R  I  C  H  G  R  M  V  C  L  K  I  A  L  E  L  Q  D  C  H  Q  Y  W  R  V  A  Q  S  Y  M  F  L  I  *  T  L  E  *  L  M  K  I  *  G :   N  S  F  R  R  W  E  N  *  Y  D  L  Q  S  T  M  T  K  M  D  V  Q  V :   A  L  L  R  W  S  L  P  E  E  V  M  H  S  K  L  L  R  D  I  T  M  C  S  W  M  G  S  L  *  R  L  K  *  L  V  P  T  Q  K  F  L  C  Q  L  V  *  M  *  L  E  E  P  T  G  G  G  L  W  L  W   : R  Q  V  V  Q  L  V  E  E  E  L  L  L  V  V  V  L   : V  K  G  A  V  V  V  *  G  M  H  L  D  V  V  E  V  V  V  A  V  V  V  G  V  E  V  V  A  A  V  V  G  E  V  A  A  G  A  L  I  S  Q  L  R  I  L  T  R  N  W  T  A  T  T  P  T  L  T  P  C  K  L  R  Y  G  A  S  I  T  C  E  L  T  R  R  T  N  H  V  Y  Y  V  S  V  S  R  H  Q  N  S  C  F  P  V  V  V  S  C  R  L  Y  D  C  T  I  N  R  S  F  D  E  C  F  L  I  P  *  *  T  Y  R  K  *  S  G  L  F  V  F  P  I  F  L  C  N  C  S  S  A  *  I  M  H  K  V  I  R  L  F  N  C  T  H  I  H  L  R  *  *  S  S  L  S  E  N  F  I  L  Q  N  </first_frame>
            <second_frame>  S  P  I  P  F  C  S  L  K  P  *  Q  H  F  F  F  S  R  S  K  N  L  L  I  N  G  D  C  I  L  N  P  E  N  F  F  I  I  T  R  S  L  V  F  L  T  I  S  S  E  K  L  Q  I  C  T  F  V  A  C  F  C  I  Y  * :   L  A  L  A  E  I  F  L  V  C  L  H  H  H  G  F  T  G  Y  D  P  G  *  Y  D  K  K  S  E  K  Y  *  E  G  W  *  G  S  R  Q  G  P  T  R  K  R  G  R  G  F  I  *  R  W  I  I  *  R  W  K  D  N  R  G  S  S  *  R  A  T  W  R  E  C  S  A  I  S  L  H  H  C  Q   : D  F  P  Q  N  Q  E  F  A  M  A  E  W  F  V  *  R  *  P  *  S  C  R  T  V  I  S  I  G  E  W  H  K  V  I  C  F  *  F  R  R  W  S  D  *  *  R  Y  K   : G  T  L  F  G  D  G  R  T  S  T  I  C  N  P  L  *  Q  K  W  T  S  K   : W  R  C  *  G  G  L  C  Q  K  K  *  C  I  P  S  S  *  E  I  *  Q  C  A  V  G  W  E  A  Y  E  D  *  N  S  W  F  Q  P  R  N  S  F  V  S  S  C  K  C  S  W  R  N  Q  P  E  E  D  C  G  Y  G  :  A  R  W  S  S  S  W  K  R  S  C  Y  *  S  W  F  *  :  S  K  G  P  W  W  F  E  E  C  T  W  T  W  S  R  W  W  W  R  S  W  L  G  *  R  S  W  P  R  W  *  G  K  *  Q  Q  G  R  *  *  V  S  *  G  S  *  Q  G  T  G  Q  L  P  R  Q  R  *  R  H  A  N  L  D  M  A  L  P  *  L  V  S  *  L  E  E  P  I  M  S  T  M  S  L  Y  H  V  T  K  T  H  A  F  Q  L  *  F  L  A  V  Y  M  I  V  R  *  I  D  H  L  M  N  A  F  *  S  P  N  E  R  I  V  N  R  V  V  Y  L  S  S  P  S  S  Y  A  T  V  V  L  L  K  L  C  I  R  *  L  D  C  S  I  V  L  T  S  I  *  G  D  K  V  H  *  V  K  T  L  Y  C  K  T </second_frame>
            <third_frame>   L  Q  F  P  F  V  L  *  N  P  N  N  I  F  S  S  L  D  Q  K  I  F  S  S  M  E  I  V  S  *  I  L  K  I  S  S  *  L  L  V  L  L  Y  F  S  P  Y  P  A  K  S  C  R  F  V  R  S  W  H  V  S  A  Y  I   : D  W  L  *  L  K  F  S  *  S  A  Y  I  I  M  A  S  L  D  M  T  L  D  D  M  I  K  S  R  R  N  T  E  R  G  G  R  G  Q  G  R  A  R  R  G  R  G  A  G  G  S  F  R  G  G  S  F  R  G  G  R  T  T  G  A  P  R  R  G  P  L  G  V  N  A  R  P  S  A  Y  T  I  A  K  :  T  F  R  R  T  K  N  L  P  W  Q  N  G  L  F  E  D  S  L  R  A  A  G  L  S  S  V  L  E  S  G  T  K  L  Y  V  S  N  L  D  V  G  V  T  N  E  D  I  R  :  E  L  F  S  E  M  G  E  L  V  R  F  A  I  H  Y  D  K  N  G  R  P  S  :  G  A  A  E  V  V  F  A  R  R  S  D  A  F  Q  A  L  K  R  Y  N  N  V  Q  L  D  G  K  P  M  K  I  E  I  V  G  S  N  P  E  I  P  L  S  A  R  V  N  V  V  G  G  T  N  R  R  R  T  V  V  M  A :   P  G  G  P  A  R  G  R  G  A  A  T  S  R  G  S  S :   Q  R  G  R  G  G  L  R  N  A  P  G  R  G  R  G  G  G  G  G  R  G  W  G  R  G  R  G  R  G  G  R  G  S  S  S  R  G  A  D  K  S  A  E  D  L  D  K  E  L  D  S  Y  H  A  N  A  D  A  M  Q  T  *  I  W  R  F  H  N  L  *  V  N  *  K  N  Q  S  C  L  L  C  L  C  I  T  S  P  K  L  M  L  S  S  C  S  F  L  P  F  I  *  L  Y  D  K  S  I  I  *  *  M  L  F  N  P  L  M  N  V  S  *  I  E  W  F  I  C  L  P  H  L  P  M  Q  L  *  F  C  L  N  Y  A  *  G  N  *  I  V  Q  L  Y  S  H  P  F  E  V  I  K  F  I  E  *  K  L  Y  I  A  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64599" stop="64375"/>
                    <exon start="62969" stop="62823"/>
                    <exon start="62737" stop="62669"/>
                    <exon start="61407" stop="61223"/>
                    <exon start="61031" stop="60981"/>
                    <exon start="60784" stop="60595"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAYIIMASLDMTLDDMIKSRRNTERGGRGQGRARRGRGAGGSFRGGSFRGGRTTGAPRRGPLGVNARPSAYTIAKTFRRTKNLPWQNGLFEDSLRAAGLSSVLESGTKLYVSNLDVGVTNEDIRELFSEMGELVRFAIHYDKNGRPSGAAEVVFARRSDAFQALKRYNNVQLDGKPMKIEIVGSNPEIPLSARVNVVGGTNRRRTVVMAPGGPARGRGAATSRGSSQRGRGGLRNAPGRGRGGGGGRGWGRGRGRGGRGSSSRGADKSAEDLDKELDSYHANADAMQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63647" e_stop="62790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="63647" e_stop="62790" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63647" stop="62790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACC</gDNA_template>
            <first_frame> V  P  T  V  T  I  V  D  D  L  *  T  F  S  L  L  E  V  C  *  W  I  L  I  *  V  G  D  S  D  G  P  I  Q  A  N  H  F  P  V  A  C  F  L  G  R  F  V  N  W  K  F  K  S  L  H  T  I  *  T  S  Y  P  L  M  Y  R  D  *  R  E  L  S  *  P  S  V  I  L  I  V  *  *  Q  S  L  *  F  S  H  Y  W  F  K  E  G  V  C  G  C  L  H  E  F  Y  L  H  F  V  E  L  L  R  D  K  I  F  C  Y  H  L  I  S  R  H  F  C  K  G  G  F  I  *  T  S  E  L  E  L  L  P  F  C  L  S  T  *  C  A  V  G  Q  F  L  L  T  P  I  Y  T  *  F  C  I  V  D  F  S  F  A  I  R  L  H  F  F  E  Q  F  N  L  T  G  N  Y  V  V  R  *  N  F  D  E  M  I  Y  C  R  R  M  V  N  L  S  N  C  L  V  A  C  *  L  L  L  S  H  L  L  I  F  P  A  C  L  L  Q  T  F  R  R  T  K  N  L  P  W  Q  N  G  L  F  E  D  S  L  R  A  A  G  L  S  S  V  L  E  S  G  T  K  L  Y  V  S  N  L  D  V  G  V  T  N  E  D  I  R  V  H  L  E  L  V  F  S  H  Y  T </first_frame>
            <second_frame>  F  Q  L  *  Q  L  L  M  I  F  E  L  S  P  C  *  R  F  A  D  G  F  *  F  K  W  E  I  Q  M  A  L  F  R  Q  I  T  S  L  *  H  A  S  W  G  D  S  L  T  G  N  L  R  A  F  T  P  F  K  H  P  T  P  *  C  I  E  I  R  G  N  F  L  N  R  L  L  S  L  L  F  S  S  N  H  S  S  F  L  I  I  G  L  K  R  E  F  V  A  V  F  M  N  S  T  C  I  L  W  N  C  *  G  T  R  S  S  V  T  I  S  F  Q  G  I  F  A  K  V  A  S  F  E  H  Q  N  W  S  S  Y  L  F  A  *  V  P  D  V  Q  W  V  N  S  F  *  L  P  S  T  L  N  S  A  S  L  T  S  L  L  L  L  D  C  I  F  L  S  N  S  T  *  L  E  T  T  *  C  D  E  T  L  M  K  *  S  T  V  E  E  W  *  I  Y  L  I  V  W  *  H  A  D  F  C  F  H  T  C  *  S  F  R  H  A  C  F  R  L  S  A  E  P  R  I  C  H  G  R  M  V  C  L  K  I  A  L  E  L  Q  D  C  H  Q  Y  W  R  V  A  Q  S  Y  M  F  L  I  *  T  L  E  *  L  M  K  I  *  G  Y  T  L  S  L  S  S  H  I  I   </second_frame>
            <third_frame>   S  N  C  N  N  C  *  *  S  L  N  F  L  L  A  R  G  L  L  M  D  F  D  L  S  G  R  F  R  W  P  Y  S  G  K  S  L  P  C  S  M  L  L  G  E  I  R  *  L  E  I  *  E  P  S  H  H  L  N  I  L  P  P  N  V  *  R  L  E  G  T  F  L  T  V  C  Y  P  Y  C  L  V  A  I  T  L  V  F  S  L  L  V  *  R  G  S  L  W  L  S  S  *  I  L  L  A  F  C  G  T  A  K  G  Q  D  L  L  L  P  S  H  F  K  A  F  L  Q  R  W  L  H  L  N  I  R  T  G  A  L  T  F  L  L  K  Y  L  M  C  S  G  S  I  P  F  N  S  H  L  H  L  I  L  H  R  *  L  L  F  C  Y  *  I  A  F  F  *  A  I  Q  L  N  W  K  L  R  S  A  M  K  L  *  *  N  D  L  L  S  K  N  G  E  F  I  *  L  F  G  S  M  L  T  F  A  F  T  P  V  N  L  S  G  M  L  A  S  D  F  P  Q  N  Q  E  F  A  M  A  E  W  F  V  *  R  *  P  *  S  C  R  T  V  I  S  I  G  E  W  H  K  V  I  C  F  *  F  R  R  W  S  D  *  *  R  Y  K  G  T  P  *  A  C  L  L  T  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63014" stop="62790"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLSHLLIFPACLLQTFRRTKNLPWQNGLFEDSLRAAGLSSVLESGTKLYVSNLDVGVTNEDIRVHLELVFSHYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="70156" PGL_stop="66753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70156" e_stop="70096"/>
            <exon e_start="68569" e_stop="68429"/>
            <exon e_start="67368" e_stop="66753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70156" e_stop="70096" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68569" e_stop="68429" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67368" e_stop="66753" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70156" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC : GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG : ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</gDNA_template>
            <first_frame> D  F  *  T  Q  T  S  P  A  E  E  I  E  N  T  V  F  T  D  K   : R  D  S  Y  N  C  D  G  E  *  I  G  K  K  S  C  E  L  R  K  S  S  N  *  T  S  H  A  F  L  F  L  Q  H  H  *  D  L  P  Q  N  H  P  L  C  F  Q   : D  *  D  K  K  G  F  G  V  S  L  R  F  *  S  *  K  G  P  N  P  *  H  G  W  K  E  E  K  E  R  W  A  V  N  C  *  T  R  L  Q  K  S  L  C  Y  S  *  E  S  I  I  Y  I  A  R  P  F  P  Y  R  S  D  P  R  G  K  E  E  Y  E  Q  E  I  Q  V  *  H  C  *  G  *  *  T  *  E  D  A  L  A  *  R  E  E  R  W  K  E  S  V  R  D  E  I  W  S  W  P  *  P  S  *  W  T  A  F  R  C  W  P  R  S  W  W  R  K  S  *  C  W  R  C  T  S  K  V  S  L  E  Q  Y  E  V  L  C  S  *  V  D  H  Y  *  I  F  I  V  P  K  *  I  I  F  L  F  R  I  I  E  F  C  I  N  G  C  F  G  S  L  A  L  C  L  V  P  L  *  S  D  A  A  S  L  L  P  T  S  Y  M  E  F  Y  V  F  F  F   </first_frame>
            <second_frame>  I  F  E  L  R  L  L  Q  L  K  K  *  R  I  Q  F  S  L  T  N  :  V  I  R  I  I  V  M  G  S  R  L  G  R  R  V  V  N  F  A  N  L  P  I  K  L  L  M  P  S  S  F  S  N  I  T  E  I  S  L  K  T  I  P  S  A  S  K  :  I  E  I  K  R  V  L  E  S  L  Y  G  F  E  V  E  K  V  Q  T  L  N  M  D  G  K  K  K  K  R  G  G  L  L  I  A  K  P  D  Y  K  K  A  Y  V  T  L  R  N  P  L  S  I  S  P  D  L  F  P  I  G  V  I  Q  E  E  K  K  N  M  S  K  K  S  K  S  S  I  V  E  D  D  E  P  K  K  T  H  W  L  D  E  K  K  D  G  R  N  R  S  E  M  R  F  G  R  G  R  D  H  R  S  G  Q  R  S  D  V  G  R  D  R  G  G  E  S  R  D  V  G  A  A  P  A  K  F  P  W  S  S  M  R  S  Y  A  P  R  *  I  I  I  E  F  L  L  C  L  S  R  L  S  F  S  S  E  *  L  N  F  V  S  M  V  A  L  D  H  W  H  C  V  *  S  H  Y  N  R  M  L  L  V  Y  F  Q  Q  V  I  W  S  S  M  F  F  S  S  </second_frame>
            <third_frame>   F  L  N  S  D  F  S  S  *  R  N  R  E  Y  S  F  H  *  Q  T :   *  F  V  *  L  *  W  G  V  D  W  E  E  E  L  *  T  S  Q  I  F  Q  L  N  F  S  C  L  P  L  S  P  T  S  L  R  S  P  S  K  P  S  P  L  L  P  R :   L  R  *  K  G  F  W  S  L  S  T  V  L  K  L  K  R  S  K  P  L  T  W  M  E  R  R  K  R  E  V  G  C  *  L  L  N  Q  T  T  K  K  L  M  L  L  L  G  I  H  Y  L  Y  R  P  T  F  S  L  S  E  *  S  K  R  K  R  R  I  *  A  R  N  P  S  L  A  L  L  R  M  M  N  L  R  R  R  I  G  L  T  R  R  K  M  E  G  I  G  Q  R  *  D  L  V  V  A  V  T  I  V  V  D  S  V  Q  M  L  A  A  I  V  V  E  K  V  V  M  L  A  L  H  Q  Q  S  F  L  G  A  V  *  G  L  M  L  L  G  R  S  L  L  N  F  Y  C  A  *  V  D  Y  L  S  L  Q  N  N  *  I  L  Y  Q  W  L  L  W  I  I  G  I  V  F  S  P  I  I  I  G  C  C  *  F  T  S  N  K  L  Y  G  V  L  C  F  F  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70119" stop="70096"/>
                    <exon start="68569" stop="68429"/>
                    <exon start="67368" stop="66925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQFSLTNVIRIIVMGSRLGRRVVNFANLPIKLLMPSSFSNITEISLKTIPSASKIEIKRVLESLYGFEVEKVQTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDLFPIGVIQEEKKNMSKKSKSSIVEDDEPKKTHWLDEKKDGRNRSEMRFGRGRDHRSGQRSDVGRDRGGESRDVGAAPAKFPWSSMRSYAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="70969" PGL_stop="70333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70969" e_stop="70333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="70969" e_stop="70333" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70969" stop="70333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCATGGGGAGTATTTTGCTGGCAAGGAATTGAAAAAAAAATCAACTTTGCTGCTTTGGGTCTCTCTATTTTACCCACAAAACTCAATGGTGAATGGCTAATCAGAAAAATAGAAAATTGTGGGAACCATAAACTAGGAAAAGCACAACCCTTCAATTGTTCTTATTTCCCCAATTCTTTGATACACTTCTGAAATTTTCATGGCATATCTTGTGATAGACTTCTGAATTTGTTTTAGAATACTATTTCATTTTCTTTTCCCTTTTTTTCCCTTATGGTGTATGAAAATAACACATTATGCAATTTTTATGTTAGACAGCTTAATTAGTATTGGAAGTATTATATTTCATGTCAAATTAAAGAAAATTCAAGTTTATATCCTCCTGCTTGTGCGACTTCTATGTTGTTGAAGTTTGTAAAAAAGAGCCTGTTCAATAGGTGAGTGAAAAATAATTCAACAAGAAAGAACAGTTTCTTAATTTGTAGAACAAACTAAAGTAGCTTAGTATAAAGAGCGACAATGTCTTTTTCACGAAAGCCTTGTTTACTAAAGAGGCAGCTAGCTTGAGGAATTATCAAAAAATCCAAAAAGTTAACCTAATTTATCAACCACATATATGCTTGTCCCTGGCATAT</gDNA_template>
            <first_frame> V  H  G  E  Y  F  A  G  K  E  L  K  K  K  S  T  L  L  L  W  V  S  L  F  Y  P  Q  N  S  M  V  N  G  *  S  E  K  *  K  I  V  G  T  I  N  *  E  K  H  N  P  S  I  V  L  I  S  P  I  L  *  Y  T  S  E  I  F  M  A  Y  L  V  I  D  F  *  I  C  F  R  I  L  F  H  F  L  F  P  F  F  P  L  W  C  M  K  I  T  H  Y  A  I  F  M  L  D  S  L  I  S  I  G  S  I  I  F  H  V  K  L  K  K  I  Q  V  Y  I  L  L  L  V  R  L  L  C  C  *  S  L  *  K  R  A  C  S  I  G  E  *  K  I  I  Q  Q  E  R  T  V  S  *  F  V  E  Q  T  K  V  A  *  Y  K  E  R  Q  C  L  F  H  E  S  L  V  Y  *  R  G  S  *  L  E  E  L  S  K  N  P  K  S  *  P  N  L  S  T  T  Y  M  L  V  P  G  I  </first_frame>
            <second_frame>  C  M  G  S  I  L  L  A  R  N  *  K  K  N  Q  L  C  C  F  G  S  L  Y  F  T  H  K  T  Q  W  *  M  A  N  Q  K  N  R  K  L  W  E  P  *  T  R  K  S  T  T  L  Q  L  F  L  F  P  Q  F  F  D  T  L  L  K  F  S  W  H  I  L  *  *  T  S  E  F  V  L  E  Y  Y  F  I  F  F  S  L  F  F  P  Y  G  V  *  K  *  H  I  M  Q  F  L  C  *  T  A  *  L  V  L  E  V  L  Y  F  M  S  N  *  R  K  F  K  F  I  S  S  C  L  C  D  F  Y  V  V  E  V  C  K  K  E  P  V  Q  *  V  S  E  K  *  F  N  K  K  E  Q  F  L  N  L  *  N  K  L  K  *  L  S  I  K  S  D  N  V  F  F  T  K  A  L  F  T  K  E  A  A  S  L  R  N  Y  Q  K  I  Q  K  V  N  L  I  Y  Q  P  H  I  C  L  S  L  A  Y </second_frame>
            <third_frame>   A  W  G  V  F  C  W  Q  G  I  E  K  K  I  N  F  A  A  L  G  L  S  I  L  P  T  K  L  N  G  E  W  L  I  R  K  I  E  N  C  G  N  H  K  L  G  K  A  Q  P  F  N  C  S  Y  F  P  N  S  L  I  H  F  *  N  F  H  G  I  S  C  D  R  L  L  N  L  F  *  N  T  I  S  F  S  F  P  F  F  S  L  M  V  Y  E  N  N  T  L  C  N  F  Y  V  R  Q  L  N  *  Y  W  K  Y  Y  I  S  C  Q  I  K  E  N  S  S  L  Y  P  P  A  C  A  T  S  M  L  L  K  F  V  K  K  S  L  F  N  R  *  V  K  N  N  S  T  R  K  N  S  F  L  I  C  R  T  N  *  S  S  L  V  *  R  A  T  M  S  F  S  R  K  P  C  L  L  K  R  Q  L  A  *  G  I  I  K  K  S  K  K  L  T  *  F  I  N  H  I  Y  A  C  P  W  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0027B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73958" PGL_stop="76579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73958" e_stop="74097"/>
            <exon e_start="75912" e_stop="75986"/>
            <exon e_start="76127" e_stop="76251"/>
            <exon e_start="76443" e_stop="76579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.685" e_score="0.914"/>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="0.960"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.960"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="73958" e_stop="74097" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.685">
            <gDNA_intron_boundary i_start="74098" i_stop="75911" i_length="1814"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="75912" e_stop="75986" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75987" i_stop="76126" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="76127" e_stop="76251" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76252" i_stop="76442" i_length="191"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="76443" e_stop="76579" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73958" stop="74097"/>
              <exon start="75912" stop="75986"/>
              <exon start="76127" stop="76251"/>
              <exon start="76443" stop="76579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCCTTCCCGGGTTTTGGGTATTTCATAGGTTTCAACCGTACCAGATAGCTCGCGCCTCTTCTGATTATGCTTTAGCTAAATTCATCGAAAAAAAATGCGAACCAGAAATCAGGCAAAGCGACAGAATCAATCAACTG : CAAGTGAAGACTCTTTGAAACACTATGGTGAGAAAGAGAGCCAAAGCGGCTGCAAAGACGAAGCCAGTGGCAATG : AAACTCTGGCAAACATATCTCGAGGTGCAGTGGGGAAACTTCTGAAACGAGTCAACAAGTCACGTGGCTCTCGGGGTCTGAAAACAGATGATAGTTACCTACGCAAACAGGATACCATCGTCGAG : CCAGAGAATGGATCAAGTGAGGCAGAAAAGCAGCTTACTGGTACTACAGTTGTAAGGACTACATTAGATGCTAAATGCTGCACTACAGATGTGTTACAAAATGTGCCATCGGAAGTGGAACATGGAAGTACAGATGT</gDNA_template>
            <first_frame> S  S  F  P  G  F  G  Y  F  I  G  F  N  R  T  R  *  L  A  P  L  L  I  M  L  *  L  N  S  S  K  K  N  A  N  Q  K  S  G  K  A  T  E  S  I  N  C :   K  *  R  L  F  E  T  L  W  *  E  R  E  P  K  R  L  Q  R  R  S  Q  W  Q  * :   N  S  G  K  H  I  S  R  C  S  G  E  T  S  E  T  S  Q  Q  V  T  W  L  S  G  S  E  N  R  *  *  L  P  T  Q  T  G  Y  H  R  R   : A  R  E  W  I  K  *  G  R  K  A  A  Y  W  Y  Y  S  C  K  D  Y  I  R  C  *  M  L  H  Y  R  C  V  T  K  C  A  I  G  S  G  T  W  K  Y  R  C </first_frame>
            <second_frame>  P  P  S  R  V  L  G  I  S  *  V  S  T  V  P  D  S  S  R  L  F  *  L  C  F  S  *  I  H  R  K  K  M  R  T  R  N  Q  A  K  R  Q  N  Q  S  T   : A  S  E  D  S  L  K  H  Y  G  E  K  E  S  Q  S  G  C  K  D  E  A  S  G  N   : E  T  L  A  N  I  S  R  G  A  V  G  K  L  L  K  R  V  N  K  S  R  G  S  R  G  L  K  T  D  D  S  Y  L  R  K  Q  D  T  I  V  E  :  P  E  N  G  S  S  E  A  E  K  Q  L  T  G  T  T  V  V  R  T  T  L  D  A  K  C  C  T  T  D  V  L  Q  N  V  P  S  E  V  E  H  G  S  T  D   </second_frame>
            <third_frame>   L  L  P  G  F  W  V  F  H  R  F  Q  P  Y  Q  I  A  R  A  S  S  D  Y  A  L  A  K  F  I  E  K  K  C  E  P  E  I  R  Q  S  D  R  I  N  Q  L  :  Q  V  K  T  L  *  N  T  M  V  R  K  R  A  K  A  A  A  K  T  K  P  V  A  M  :  K  L  W  Q  T  Y  L  E  V  Q  W  G  N  F  *  N  E  S  T  S  H  V  A  L  G  V  *  K  Q  M  I  V  T  Y  A  N  R  I  P  S  S  S :   Q  R  M  D  Q  V  R  Q  K  S  S  L  L  V  L  Q  L  *  G  L  H  *  M  L  N  A  A  L  Q  M  C  Y  K  M  C  H  R  K  W  N  M  E  V  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74040" stop="74097"/>
                    <exon start="75912" stop="75986"/>
                    <exon start="76127" stop="76251"/>
                    <exon start="76443" stop="76577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHRKKMRTRNQAKRQNQSTASEDSLKHYGEKESQSGCKDEASGNETLANISRGAVGKLLKRVNKSRGSRGLKTDDSYLRKQDTIVEPENGSSEAEKQLTGTTVVRTTLDAKCCTTDVLQNVPSEVEHGSTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="76594" PGL_stop="80299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76594" e_stop="76766"/>
            <exon e_start="76864" e_stop="76956"/>
            <exon e_start="77356" e_stop="77448"/>
            <exon e_start="77532" e_stop="77633"/>
            <exon e_start="79234" e_stop="79283"/>
            <exon e_start="79985" e_stop="80299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.946" e_score="0.983"/>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="76594" e_stop="76766" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76767" i_stop="76863" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76864" e_stop="76956" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76957" i_stop="77355" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77356" e_stop="77448" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77449" i_stop="77531" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77532" e_stop="77633" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77634" i_stop="79233" i_length="1600"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79234" e_stop="79283" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="79284" i_stop="79984" i_length="701"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79985" e_stop="80299" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76594" stop="76766"/>
              <exon start="76864" stop="76956"/>
              <exon start="77356" stop="77448"/>
              <exon start="77532" stop="77633"/>
              <exon start="79234" stop="79283"/>
              <exon start="79985" stop="80299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAGATGGGCCAGTTGATACTTTGAAGTCTGAAAGCAATGTTAAGGAAGATACAATCAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAG : GAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAG : GCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGG : ATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAG : GTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAG : GTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAA</gDNA_template>
            <first_frame> L  R  G  K  M  N  L  M  V  L  I  G  K  M  G  Q  L  I  L  *  S  L  K  A  M  L  R  K  I  Q  S  M  V  *  L  L  S  L  M  L  R  L  I  L  V  N  R  R  Q  Y  A  E  Q  L  H  K  K  R :   N  W  L  S  L  C  I  R  L  T  C  F  V  Y  *  Q  G  A  G  L  *  I  A  L  A  M  I  L  L  S  R :   L  R  Y  F  H  C  C  L  H  I  C  *  S  *  P  M  L  Q  N  L  L  Q  R  H  *  L  L  L  S  I  G :   S  I  V  I  S  V  L  E  V  Q  M  I  W  R  S  H  F  I  Q  L  W  H  Q  L  S  S  P  R  K  G  P  Q  K  R :   L  L  H  Y  L  W  P  C  L  G  P  *  I  L  R  P   : G  S  Y  Q  S  W  M  W  L  L  *  S  L  K  L  R  N  H  I  P  L  V  K  A  L  V  R  L  V  V  G  Y  L  A  L  Q  H  *  W  W  L  D  Q  S  V  L  L  S  L  L  L  N  L  W  L  M  A  S  T  M  F  L  I  R  L  Q  H  L  L  A  K  L  P  M  T  S  L  E  K  L  L  Q  I  S  L  I  K  E  C  Q  H  R  H  Q  M  L  R  V  I  L  M  M  H  V  L  </first_frame>
            <second_frame>  *  E  G  R  *  T  *  W  Y  *  L  G  R  W  A  S  *  Y  F  E  V  *  K  Q  C  *  G  R  Y  N  Q  W  C  D  C  *  V  *  C  S  A  *  S  *  *  T  E  D  S  T  P  S  N  C  T  R  K   : G  I  G  *  A  C  A  *  G  *  L  A  L  F  T  S  K  G  Q  V  C  R  *  R  L  Q  *  S  S  Y  P   : G  F  V  T  F  T  A  A  C  T  S  A  E  V  D  R  C  S  K  T  Y  C  K  G  T  S  S  S  C  Q  L   : D  P  *  S  F  P  C  *  R  C  K  *  Y  G  E  A  I  S  F  S  F  G  I  N  S  R  V  P  G  R  D  P  R  R   : G  C  C  I  I  C  G  P  V  *  G  L  E  S  Y  D  Q  :  V  R  I  N  L  G  C  G  F  F  E  A  *  N  *  E  I  I  S  L  W  *  R  P  *  *  G  W  *  W  D  I  *  L  F  N  I  D  G  G  W  T  K  V  F  S  S  L  S  C  *  I  Y  G  L  W  Q  A  Q  C  F  *  *  D  F  N  I  C  W  P  S  Y  Q  *  Q  V  *  R  N  Y  Y  R  *  V  *  *  K  N  V  S  I  D  I  R  C  S  G  *  F  *  *  C  M  Y  * </second_frame>
            <third_frame>   E  R  E  D  E  L  D  G  I  D  W  E  D  G  P  V  D  T  L  K  S  E  S  N  V  K  E  D  T  I  N  G  V  T  V  E  F  D  A  P  P  D  P  S  K  Q  K  T  V  R  R  A  T  A  Q  E  K  :  E  L  A  E  L  V  H  K  V  N  L  L  C  L  L  A  R  G  R  F  V  D  S  A  C  N  D  P  L  I  Q  :  A  S  L  L  S  L  L  P  A  H  L  L  K  L  T  D  A  P  K  L  T  A  K  A  L  A  P  L  V  N  W  :  I  H  S  H  F  R  V  R  G  A  N  D  M  E  K  P  F  H  S  A  L  A  S  T  L  E  S  Q  E  G  T  P  E  E  :  V  A  A  L  S  V  A  L  F  R  A  L  N  L  T  T  R :   F  V  S  I  L  D  V  A  S  L  K  P  E  I  E  K  S  Y  P  S  G  K  G  P  S  K  A  G  S  G  I  F  S  S  S  T  L  M  V  A  G  P  K  C  S  P  L  S  P  A  K  S  M  A  Y  G  K  H  N  V  S  D  K  T  S  T  S  A  G  Q  A  T  N  D  K  S  R  E  T  I  T  D  K  S  N  K  R  M  S  A  S  T  S  D  A  Q  G  D  S  N  D  A  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76596" stop="76766"/>
                    <exon start="76864" stop="76956"/>
                    <exon start="77356" stop="77448"/>
                    <exon start="77532" stop="77633"/>
                    <exon start="79234" stop="79283"/>
                    <exon start="79985" stop="80297"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREDELDGIDWEDGPVDTLKSESNVKEDTINGVTVEFDAPPDPSKQKTVRRATAQEKELAELVHKVNLLCLLARGRFVDSACNDPLIQASLLSLLPAHLLKLTDAPKLTAKALAPLVNWIHSHFRVRGANDMEKPFHSALASTLESQEGTPEEVAALSVALFRALNLTTRFVSILDVASLKPEIEKSYPSGKGPSKAGSGIFSSSTLMVAGPKCSPLSPAKSMAYGKHNVSDKTSTSAGQATNDKSRETITDKSNKRMSASTSDAQGDSNDACI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="83362" PGL_stop="87042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83362" e_stop="83442"/>
            <exon e_start="83638" e_stop="84193"/>
            <exon e_start="87024" e_stop="87042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.914"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="83362" e_stop="83442" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="83443" i_stop="83637" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83638" e_stop="84193" e_length="556"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84194" i_stop="87023" i_length="2830"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="87024" e_stop="87042" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83362" stop="83442"/>
              <exon start="83638" stop="84193"/>
              <exon start="87024" stop="87042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAATTCCGAAATGGTCGATCTCTACCTGTTTATGAGGGGATTGTGGTGTGTACCGAGTTCAAGGATGCAATTCTTGAG : GCATATGCAGAAGAAGAGGTGAGAAGAGAGGCCAAAGAGCGGAGGAGGACTGAAGCAGAAGCTCTTTCTAGGTGGTATCAGCTTCTTTCATCACTTATTACCCGACAGAGGCTGCACAATTGTTACGTAGACGGGGCATCCTCACAATCAGCAGTCAATATTGCAACATCCAACGATAAATCCTCCTTACTAGCTGGTGGCAGTGAGAACACGAGGAGCGCTCGTCAAGAAAAATCTGAGATAGCCAAATCTAATAGTCCACCATTTGTACTTGCAGAAAACCATGAGCATGTTTTCTTTGTAGAAGATCAGACTGTTGATGAAGAAAGTTCAACAAGGACGAAACGATGTCGTTGTGGCTTTTCAGTTCAATATGAGGAGTTGTAGAGCTTTAAATCTCTCAATTTTAGTATGAGAAATTAGAGAACTTTTTATTCTCATGCAAAGTTGGGTTGTAAGTTGAAGTTGATAGAAATACTAATGTATGATTGTATGTAACATCAGATCATGACAACAATCTGTCTTTTTGTATAATATCGGTTTGGGATGAGCTTAA : AAAAAAAAAACAAAAAAAA</gDNA_template>
            <first_frame> F  E  F  R  N  G  R  S  L  P  V  Y  E  G  I  V  V  C  T  E  F  K  D  A  I  L  E  :  A  Y  A  E  E  E  V  R  R  E  A  K  E  R  R  R  T  E  A  E  A  L  S  R  W  Y  Q  L  L  S  S  L  I  T  R  Q  R  L  H  N  C  Y  V  D  G  A  S  S  Q  S  A  V  N  I  A  T  S  N  D  K  S  S  L  L  A  G  G  S  E  N  T  R  S  A  R  Q  E  K  S  E  I  A  K  S  N  S  P  P  F  V  L  A  E  N  H  E  H  V  F  F  V  E  D  Q  T  V  D  E  E  S  S  T  R  T  K  R  C  R  C  G  F  S  V  Q  Y  E  E  L  *  S  F  K  S  L  N  F  S  M  R  N  *  R  T  F  Y  S  H  A  K  L  G  C  K  L  K  L  I  E  I  L  M  Y  D  C  M  *  H  Q  I  M  T  T  I  C  L  F  V  *  Y  R  F  G  M  S  L   : K  K  K  N  K  K   </first_frame>
            <second_frame>  L  N  S  E  M  V  D  L  Y  L  F  M  R  G  L  W  C  V  P  S  S  R  M  Q  F  L  R :   H  M  Q  K  K  R  *  E  E  R  P  K  S  G  G  G  L  K  Q  K  L  F  L  G  G  I  S  F  F  H  H  L  L  P  D  R  G  C  T  I  V  T  *  T  G  H  P  H  N  Q  Q  S  I  L  Q  H  P  T  I  N  P  P  Y  *  L  V  A  V  R  T  R  G  A  L  V  K  K  N  L  R  *  P  N  L  I  V  H  H  L  Y  L  Q  K  T  M  S  M  F  S  L  *  K  I  R  L  L  M  K  K  V  Q  Q  G  R  N  D  V  V  V  A  F  Q  F  N  M  R  S  C  R  A  L  N  L  S  I  L  V  *  E  I  R  E  L  F  I  L  M  Q  S  W  V  V  S  *  S  *  *  K  Y  *  C  M  I  V  C  N  I  R  S  *  Q  Q  S  V  F  L  Y  N  I  G  L  G  *  A  *  :  K  K  K  T  K  K  </second_frame>
            <third_frame>   *  I  P  K  W  S  I  S  T  C  L  *  G  D  C  G  V  Y  R  V  Q  G  C  N  S  *   : G  I  C  R  R  R  G  E  K  R  G  Q  R  A  E  E  D  *  S  R  S  S  F  *  V  V  S  A  S  F  I  T  Y  Y  P  T  E  A  A  Q  L  L  R  R  R  G  I  L  T  I  S  S  Q  Y  C  N  I  Q  R  *  I  L  L  T  S  W  W  Q  *  E  H  E  E  R  S  S  R  K  I  *  D  S  Q  I  *  *  S  T  I  C  T  C  R  K  P  *  A  C  F  L  C  R  R  S  D  C  *  *  R  K  F  N  K  D  E  T  M  S  L  W  L  F  S  S  I  *  G  V  V  E  L  *  I  S  Q  F  *  Y  E  K  L  E  N  F  L  F  S  C  K  V  G  L  *  V  E  V  D  R  N  T  N  V  *  L  Y  V  T  S  D  H  D  N  N  L  S  F  C  I  I  S  V  W  D  E  L  K :   K  K  K  Q  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83362" stop="83442"/>
                    <exon start="83638" stop="84024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEFRNGRSLPVYEGIVVCTEFKDAILEAYAEEEVRREAKERRRTEAEALSRWYQLLSSLITRQRLHNCYVDGASSQSAVNIATSNDKSSLLAGGSENTRSARQEKSEIAKSNSPPFVLAENHEHVFFVEDQTVDEESSTRTKRCRCGFSVQYEEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="87564" PGL_stop="85713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87564" e_stop="87449"/>
            <exon e_start="86487" e_stop="85713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87564" e_stop="87449" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="86487" e_stop="85713" e_length="775"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87564" stop="87449"/>
              <exon start="86487" stop="85713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG : ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTTCTTGGTTGATGTTGTATTTGTAGTGATTTGTGTGTAATTCTTGTAGCTG</gDNA_template>
            <first_frame> V  L  T  L  S  L  S  L  H  L  F  V  G  T  F  L  S  F  S  L  C  K  F  Q  W  L  L  N  L  S  T  R  F  I  L  N  T  L  R :   *  F  M  K  P  L  M  H  C  N  K  K  K  A  Q  T  S  H  Q  Y  Q  S  T  L  N  L  S  M  E  T  *  M  M  H  T  Q  S  *  *  L  T  I  W  I  E  *  N  K  L  V  N  L  F  S  *  K  T  T  T  L  N  L  V  Q  M  H  P  L  S  V  A  A  A  D  H  L  N  P  N  L  Y  C  H  K  E  Q  I  L  Q  L  Q  S  Q  E  V  A  R  K  K  T  P  M  H  H  L  L  P  R  N  Q  N  Q  Q  V  S  L  V  T  *  L  L  F  R  K  P  E  G  L  E  V  G  L  G  R  L  G  R  S  H  H  K  M  V  *  S  E  A  E  N  P  Q  T  W  L  M  V  T  T  F  I  T  L  L  C  F  *  V  F  L  V  D  V  V  V  V  R  G  C  V  S  S  S  C  V  M  *  I  V  R  R  S  C  T  C  F  N  A  C  *  F  A  I  H  S  R  *  G  S  *  A  T  A  S  T  E  W  C  K  V  K  L  K  I  C  *  L  C  *  W  *  *  L  S  M  T  V  L  C  L  K  F  F  L  V  D  V  V  F  V  V  I  C  V  *  F  L  *  L </first_frame>
            <second_frame>  S  S  L  S  L  S  L  S  I  S  L  W  G  H  F  S  L  S  L  S  A  S  F  N  G  Y  *  I  C  Q  Q  D  S  S  *  I  P  S   : D  D  L  *  S  P  *  C  I  A  T  K  R  R  L  K  Q  V  I  N  I  K  V  H  *  I  *  V  W  K  H  E  *  C  T  L  K  V  D  N  L  P  F  G  *  N  E  T  N  W  *  T  Y  F  P  K  K  Q  L  H  *  T  W  S  R  C  T  P  *  A  W  P  R  P  T  T  *  T  Q  T  Y  I  A  T  R  N  R  Y  C  S  S  K  A  K  R  S  P  E  K  R  P  Q  C  T  T  Y  S  Q  E  T  K  T  N  K  C  P  *  *  L  S  S  C  F  E  N  R  K  A  *  R  *  A  *  E  D  *  A  A  A  T  T  K  W  F  R  V  K  L  K  I  R  R  L  G  *  W  *  R  L  L  *  L  C  C  V  F  K  F  S  W  L  M  L  *  L  *  G  V  V  F  L  L  A  V  *  C  R  L  L  G  D  P  V  L  V  L  M  L  V  D  S  R  F  T  V  D  R  E  V  E  P  Q  P  A  Q  N  G  V  K  *  S  *  R  F  V  D  F  V  D  G  D  D  S  Q  *  L  C  Y  V  S  S  F  S  W  L  M  L  Y  L  *  *  F  V  C  N  S  C  S   </second_frame>
            <third_frame>   P  H  S  L  S  L  S  P  S  L  C  G  D  I  S  L  F  L  S  L  Q  V  S  M  A  T  E  F  V  N  K  I  H  P  E  Y  P  Q  :  M  I  Y  E  A  L  D  A  L  Q  Q  K  E  G  S  N  K  S  S  I  S  K  Y  I  E  S  K  Y  G  N  M  N  D  A  H  S  K  L  I  T  Y  H  L  D  R  M  K  Q  T  G  E  L  I  F  L  K  N  N  Y  I  K  P  G  P  D  A  P  P  K  R  G  R  G  R  P  P  K  P  K  P  I  L  P  Q  G  T  D  I  A  A  P  K  P  R  G  R  P  K  K  D  P  N  A  P  P  T  P  K  K  P  K  P  T  S  V  P  S  D  L  A  P  V  S  K  T  G  R  P  R  G  R  P  R  K  I  R  P  Q  P  P  Q  N  G  L  E  *  S  *  K  S  A  D  L  V  D  G  D  D  F  Y  N  S  V  V  F  L  S  F  L  G  *  C  C  S  C  K  G  L  C  F  F  *  L  C  N  V  D  C  *  E  I  L  Y  L  F  *  C  L  L  I  R  D  S  Q  *  I  G  K  L  S  H  S  Q  H  R  M  V  *  S  E  A  E  D  L  L  T  L  L  M  V  M  T  L  N  D  C  V  M  S  Q  V  F  L  G  *  C  C  I  C  S  D  L  C  V  I  L  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87562" stop="87449"/>
                    <exon start="86487" stop="86050"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSLSPSLCGDISLFLSLQVSMATEFVNKIHPEYPQMIYEALDALQQKEGSNKSSISKYIESKYGNMNDAHSKLITYHLDRMKQTGELIFLKNNYIKPGPDAPPKRGRGRPPKPKPILPQGTDIAAPKPRGRPKKDPNAPPTPKKPKPTSVPSDLAPVSKTGRPRGRPRKIRPQPPQNGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="94220" PGL_stop="88105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94220" e_stop="94091"/>
            <exon e_start="92922" e_stop="92557"/>
            <exon e_start="92359" e_stop="92219"/>
            <exon e_start="91508" e_stop="91435"/>
            <exon e_start="91192" e_stop="91116"/>
            <exon e_start="91041" e_stop="90970"/>
            <exon e_start="90206" e_stop="90138"/>
            <exon e_start="89983" e_stop="89937"/>
            <exon e_start="89823" e_stop="89709"/>
            <exon e_start="89626" e_stop="89558"/>
            <exon e_start="89444" e_stop="89341"/>
            <exon e_start="88695" e_stop="88620"/>
            <exon e_start="88512" e_stop="88105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.597" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94220" e_stop="94091" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="94090" i_stop="92923" i_length="1168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92922" e_stop="92557" e_length="366"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92359" e_stop="92219" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91508" e_stop="91435" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91192" e_stop="91116" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.597">
            <gDNA_intron_boundary i_start="91115" i_stop="91042" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91041" e_stop="90970" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90206" e_stop="90138" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89983" e_stop="89937" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.754">
            <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89823" e_stop="89709" e_length="115"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89626" e_stop="89558" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.966">
            <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="89444" e_stop="89341" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="88695" e_stop="88620" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="88512" e_stop="88105" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94220" stop="94091"/>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92219"/>
              <exon start="91508" stop="91435"/>
              <exon start="91192" stop="91116"/>
              <exon start="91041" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAG : GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG : TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG : GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG : CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACT : ATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG : GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG : TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT : GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG : GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG : CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG : GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG : AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAA</gDNA_template>
            <first_frame> A  R  *  N  Y  V  V  A  L  L  Y  L  A  Y  F  S  M  W  V  S  I  N  S  S  K  I  S  S  L  L  T  P  P  H  P  L  L  S  V  L  G  S  K   : G  F  R  L  M  L  C  *  I  L  F  R  L  S  G  N  S  W  E  F  C  F  W  L  V  R  S  C  R  *  P  W  L  P  Q  M  G  S  F  I  I  L  L  N  H  L  N  T  Q  R  F  T  P  T  V  K  G  L  N  I  A  N  T  T  D  I  L  I  C  Q  D  *  S  F  L  I  R  G  S  G  R  H  A  E  N  *  A  T  V  S  S  S  G  D  L  L  C  Y  V  S  Q  Q  K  H  A  T  L  R  Q  S  V  P  E  T  V  M  I  V  P  I  Y  L   : V  Y  K  K  M  I  K  Q  P  Q  L  G  K  L  F  L  Q  V  R  Q  L  Q  K  L  V  N  L  L  T  T  M  P  N  L  *  M  K  G  R  R  M  I  L  C  C  F  L   : G  K  *  *  E  W  M  P  V  R  A  K  M  L  H  F  L  V  Q  S  F  L  S  L  M  :  L  G  H  G  K  I  L  R  K  L  I  T  M  *  R  K  E  P  K  E  S  S  M  L  P  L :   F  L  K  T  *  L  K  R  D  *  R  K  L  L  I  D  T  G  A  M  V  P  W  R :   L  I  *  D  V  P  I  L  W  Q  N  S  V  Q  W  R  I  L  *  W  L  W  S :   L  S  R  T  F  M  I  G  W  *  A  R  C  A  N   : *  K  E  V  P  S  I  R  R  K  Q  G  I  L  L  *  R  R  M  G  K  L  W  S  F  F  L  G  K  F  Q  L  I  A  S  L  L  S  R :   K  H  I  G  I  *  H  L  H  F  P  K  L  M  E  L  T  I  L  I  Q  K  S :   S  S  C  W  *  Q  R  L  *  I  L  M  Q  W  M  V  K  V  V  Y  P  C  W  P  S  V  Q  V  L  L  M  *  T  Q   : G  K  H  *  Q  M  H  L  Q  L  H  R  P  C  G  L  *  E  T  L  A  W  E  R  Y  R :   D  *  Q  K  M  T  T  L  P  L  Q  L  L  H  L  K  P  F  L  N  *  K  D  N  G  K  *  E  R  E  I  A  G  G  S  W  W  T  K  C  H  Q  G  M  *  G  V  K  M  T  T  M  G  H  I  R  R  C  P  *  L  N  T  V  D  I  *  M  K  G  L  I  D  I  R  P  V  K  K  K  I  V  H  K  L  Y  L  H  *  K  K  K  C  Q  T  D  F  I  L  S  C  Y  V  T  C  L  Y  L  W  I  I  D  I  F  I  N  V  *  K  V  *  S  N  T  L  F  F  L  Y  T  K  Q  I  S  D   </first_frame>
            <second_frame>  L  D  E  I  M  *  L  L  C  F  I  *  L  I  F  P  C  G  C  P  S  I  L  P  R  F  H  L  Y  *  P  H  P  T  P  F  S  L  C  W  V  A  K  :  V  F  G  *  C  F  V  K  Y  F  F  V  S  P  E  T  A  G  N  F  A  F  G  L  Y  D  L  V  D  N  H  G  Y  P  K  W  D  H  L  L  F  C  *  I  T  S  T  P  K  G  S  H  P  Q  S  R  D  *  T  *  Q  T  Q  R  I  F  *  Y  A  K  T  E  V  F  *  *  E  V  L  G  G  M  R  K  T  K  Q  P  C  H  L  Q  G  I  S  C  V  M  S  L  N  R  N  T  R  H  *  D  R  V  C  Q  K  Q  *  *  L  F  Q  Y  I  *  :  C  T  R  K  *  S  S  N  H  S  W  E  S  Y  S  F  K  S  G  N  C  R  S  L  *  I  C  L  Q  R  C  Q  I  C  E  *  K  G  E  E  *  Y  C  A  A  F  S  :  G  N  N  E  N  G  C  P  C  A  P  R  C  C  I  S  W  F  R  V  S  *  A  *  C :   S  G  T  G  R  Y  *  E  S  *  S  Q  C  K  E  K  S  R  K  N  P  A  C  C  H   : Y  S  *  K  H  S  S  N  E  T  E  E  S  C  *  S  T  L  E  R  W  C  L  G   : G  *  F  K  T  C  R  F  C  G  K  T  A  C  N  G  G  F  S  D  G  S  G   : V  C  Q  E  H  S  *  *  D  G  E  Q  D  V  Q  I  :  E  K  K  F  H  R  Y  G  E  N  K  A  Y  Y  S  R  E  E  W  E  N  S  G  V  S  S  W  G  S  F  S  *  S  P  H  C  Y  P   : G  S  I  L  G  Y  S  I  C  T  F  R  S  *  W  N  *  L  Y  *  S  R  R   : A  R  V  V  G  S  N  A  Y  R  S  *  C  N  G  W  *  K  *  C  I  L  A  G  R  V  F  K  F  S  *  C  E  H  K  :  E  S  I  S  K  C  T  C  S  C  T  V  H  V  D  F  R  K  R  W  H  G  S  V  T   : E  T  S  R  R  *  Q  P  C  H  C  S  C  C  I  *  N  H  S  *  I  E  K  T  M  G  N  R  R  G  R  *  L  E  V  H  G  G  R  S  V  T  R  G  C  R  E  S  R  *  Q  Q  W  D  I  L  E  G  A  R  N  S  I  L  *  I  S  R  *  R  D  *  S  I  F  V  L  *  K  K  K  *  F  I  S  S  T  Y  I  R  K  K  N  A  K  L  I  S  S  F  H  A  M  *  L  V  C  I  F  G  S  L  I  F  L  S  M  Y  K  K  S  K  A  T  L  Y  S  S  Y  I  Q  S  R  F  L  I  </second_frame>
            <third_frame>   *  M  K  L  C  S  C  F  A  L  F  S  L  F  F  H  V  G  V  H  Q  F  F  Q  D  F  I  F  T  N  P  T  P  P  P  S  L  C  A  G  *  Q  R :   F  S  V  N  A  L  L  N  T  F  S  S  L  R  K  Q  L  G  I  L  L  L  A  C  T  I  L  *  I  T  M  A  T  P  N  G  I  I  Y  Y  S  A  K  S  P  Q  H  P  K  V  H  T  H  S  Q  G  T  E  H  S  K  H  N  G  Y  S  N  M  P  R  L  K  F  S  N  K  R  F  W  E  A  C  G  K  L  S  N  R  V  I  F  R  G  S  P  V  L  C  L  S  T  E  T  R  D  T  E  T  E  C  A  R  N  S  D  D  C  S  N  I  S  S :   V  Q  E  N  D  Q  A  T  T  V  G  K  V  I  P  S  S  Q  A  I  A  E  A  C  K  F  A  Y  N  D  A  K  F  V  N  E  R  A  K  N  D  I  V  L  L  S  R :   E  I  M  R  M  D  A  R  A  R  Q  D  V  A  F  L  G  S  E  F  L  K  L  D   : A  R  A  R  E  D  T  E  K  V  D  H  N  V  K  K  R  A  E  R  I  Q  H  V  A  T  :  I  L  K  N  I  A  Q  T  R  L  K  K  A  A  D  R  H  W  S  D  G  A  L  E  :  A  D  L  R  R  A  D  F  V  A  K  Q  R  A  M  E  D  S  L  M  A  L  E  :  F  V  K  N  I  H  D  R  M  V  S  K  M  C  K  L :   K  R  S  S  I  D  T  E  K  T  R  H  I  T  L  E  K  N  G  K  T  L  E  F  L  P  G  E  V  S  A  D  R  L  T  A  I  Q  :  E  A  Y  W  D  I  A  S  A  L  S  E  A  D  G  I  D  Y  T  D  P  E  E  :  L  E  L  L  V  A  T  L  I  D  L  D  A  M  D  G  K  S  S  V  S  L  L  A  E  C  S  S  S  P  D  V  N  T  R :   K  A  L  A  N  A  L  A  A  A  P  S  M  W  T  L  G  N  A  G  M  G  A  L  Q  :  R  L  A  E  D  D  N  P  A  I  A  A  A  A  S  K  T  I  L  E  L  K  R  Q  W  E  I  G  E  G  D  S  W  R  F  M  V  D  E  V  S  P  G  D  V  G  S  Q  D  D  N  N  G  T  Y  *  K  V  P  V  T  Q  Y  C  R  Y  L  D  E  G  T  N  R  Y  S  S  C  K  K  K  N  S  S  *  A  L  L  T  L  E  K  K  M  P  N  *  F  H  P  F  M  L  C  N  L  F  V  S  L  D  H  *  Y  F  Y  Q  C  I  K  S  L  K  Q  H  F  I  L  L  I  Y  K  A  D  F  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92837" stop="92557"/>
                    <exon start="92359" stop="92219"/>
                    <exon start="91508" stop="91435"/>
                    <exon start="91192" stop="91116"/>
                    <exon start="91041" stop="90970"/>
                    <exon start="90206" stop="90138"/>
                    <exon start="89983" stop="89937"/>
                    <exon start="89823" stop="89709"/>
                    <exon start="89626" stop="89558"/>
                    <exon start="89444" stop="89341"/>
                    <exon start="88695" stop="88620"/>
                    <exon start="88512" stop="88345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITMATPNGIIYYSAKSPQHPKVHTHSQGTEHSKHNGYSNMPRLKFSNKRFWEACGKLSNRVIFRGSPVLCLSTETRDTETECARNSDDCSNISSVQENDQATTVGKVIPSSQAIAEACKFAYNDAKFVNERAKNDIVLLSREIMRMDARARQDVAFLGSEFLKLDARAREDTEKVDHNVKKRAERIQHVATILKNIAQTRLKKAADRHWSDGALEADLRRADFVAKQRAMEDSLMALEFVKNIHDRMVSKMCKLKRSSIDTEKTRHITLEKNGKTLEFLPGEVSADRLTAIQEAYWDIASALSEADGIDYTDPEELELLVATLIDLDAMDGKSSVSLLAECSSSPDVNTRKALANALAAAPSMWTLGNAGMGALQRLAEDDNPAIAAAASKTILELKRQWEIGEGDSWRFMVDEVSPGDVGSQDDNNGTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="103500" PGL_stop="102199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103500" e_stop="102199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="103500" e_stop="102199" e_length="1302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103500" stop="102574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103035" stop="102199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTAAACTCCAAACAATATAGTATATGATATTCGACTGATCGAACAGAGACGAAAGTTAACCATAATAAATCAGGAGTGAGTTCGGTGTGAAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTGAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTGTTGATCGGAAACCGCCGTGGAGGTCAGGGACTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATCAGCGGATGAGGGGATTGTGTGTAGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCTTTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGTGTTGAAAATTCAATTTCTTTTGCTTGTAGAATTAGTATATGATTAATAATACTATAATCCTAATTAACGGGTCAATAAATTGTATGCTGCCTTTATAATGATTGTAATTTGTTTACTCCCTAAAAGGACATGTTAAAA</gDNA_template>
            <first_frame> L  L  N  S  K  Q  Y  S  I  *  Y  S  T  D  R  T  E  T  K  V  N  H  N  K  S  G  V  S  S  V  *  K  D  S  R  S  T  E  K  W  Q  L  S  L  S  H  C  V  L  Y  S  S  S  L  S  *  F  I  L  L  R  L  R  L  R  F  R  L  I  Y  I  R  Q  R  F  P  *  T  T  I  R  C  L  R  V  S  K  F  S  Y  I  Q  R  L  N  E  L  F  F  L  V  R  Q  L  Q  I  S  T  N  L  S  L  T  A  R  L  S  L  R  S  L  K  K  L  I  C  S  S  W  F  S  L  R  R  Y  L  V  V  L  R  R  G  L  F  V  S  *  E  R  S  I  L  T  G  T  G  R  *  E  L  I  I  F  L  S  H  R  K  E  L  I  F  L  L  I  E  M  H  L  S  *  R  K  I  Q  F  R  F  R  F  F  R  L  F  Q  V  S  L  Y  L  I  R  I  S  V  C  L  R  *  V  N  P  L  S  Y  C  P  T  R  R  *  I  W  I  V  R  V  *  V  I  *  N  G  T  G  R  R  R  R  S  W  W  R  S  *  G  W  I  R  S  S  S  L  N  L  S  R  W  I  N  *  E  E  *  R  V  V  S  F  V  C  S  S  T  K  L  N  R  R  W  I  *  L  K  Q  W  R  R  D  V  F  R  *  *  L  L  T  V  R  F  R  I  F  R  *  W  T  Y  *  G  G  R  K  W  H  C  *  S  E  T  A  V  E  V  R  D  *  R  R  S  *  A  V  C  R  R  I  D  I  S  G  *  G  D  C  V  *  R  R  L  T  I  W  C  G  T  R  N  L  R  R  T  M  L  F  I  W  *  C  I  S  C  G  *  D  G  I  R  L  D  T  L  G  G  K  N  F  S  V  E  N  S  I  S  F  A  C  R  I  S  I  *  L  I  I  L  *  S  *  L  T  G  Q  *  I  V  C  C  L  Y  N  D  C  N  L  F  T  P  *  K  D  M  L  K </first_frame>
            <second_frame>  Y  *  T  P  N  N  I  V  Y  D  I  R  L  I  E  Q  R  R  K  L  T  I  I  N  Q  E  *  V  R  C  E  R  I  L  A  Q  R  R  N  G  N  F  H  F  L  I  V  F  Y  T  L  P  L  C  L  S  S  S  F  F  V  F  V  F  V  F  A  L  S  I  S  V  N  V  F  H  E  L  R  *  D  A  Y  E  F  Q  S  F  H  I  S  N  D  S  T  N  Y  F  F  *  S  V  S  F  K  F  L  R  I  S  H  *  Q  R  V  Y  H  S  G  A  *  R  S  *  S  V  L  R  G  F  L  S  G  D  I  *  S  F  S  G  A  A  C  S  *  A  E  N  E  V  S  L  L  E  P  D  V  R  S  *  S  F  F  Y  L  T  G  R  N  *  F  F  F  *  *  K  C  T  *  A  E  E  K  F  S  S  D  F  G  F  S  D  C  F  R  *  V  Y  T  S  *  G  Y  Q  F  V  S  G  E  *  I  L  S  R  T  V  P  R  A  G  E  Y  G  S  F  V  F  R  L  S  E  M  G  R  E  D  G  G  G  V  G  G  G  V  E  V  G  F  G  V  R  R  *  I  *  A  V  G  S  I  R  K  S  E  E  *  *  V  L  S  V  L  L  R  S  *  I  D  V  G  F  D  *  S  N  G  G  G  M  C  S  G  S  D  C  *  P  S  G  S  G  F  S  V  D  G  R  I  E  V  V  G  N  G  T  V  D  R  K  P  P  W  R  S  G  T  E  G  G  P  E  R  C  A  G  G  *  I  S  A  D  E  G  I  V  C  S  G  G  S  P  Y  G  V  E  R  G  T  S  G  V  R  C  F  S  Y  G  D  V  S  A  V  D  E  T  A  Y  D  *  I  H  S  E  G  R  I  L  V  L  K  I  Q  F  L  L  L  V  E  L  V  Y  D  *  *  Y  Y  N  P  N  *  R  V  N  K  L  Y  A  A  F  I  M  I  V  I  C  L  L  P  K  R  T  C  *   </second_frame>
            <third_frame>   I  K  L  Q  T  I  *  Y  M  I  F  D  *  S  N  R  D  E  S  *  P  *  *  I  R  S  E  F  G  V  K  G  F  S  L  N  G  E  M  A  T  F  T  F  S  L  C  F  I  L  F  L  F  V  L  V  H  P  S  S  S  S  S  S  F  S  P  Y  L  Y  P  S  T  F  S  M  N  Y  D  K  M  L  T  S  F  K  V  F  I  Y  P  T  T  Q  R  I  I  F  F  S  P  S  A  S  N  F  Y  E  S  L  I  N  S  A  F  I  T  Q  E  P  E  E  A  D  L  F  F  V  V  F  S  P  E  I  S  S  R  S  Q  A  R  L  V  R  E  L  R  T  K  Y  P  Y  W  N  R  T  L  G  A  D  H  F  F  I  S  P  E  G  I  D  F  S  S  D  R  N  A  L  E  L  K  K  N  S  V  Q  I  S  V  F  P  T  V  S  G  K  F  I  P  H  K  D  I  S  L  S  P  V  S  K  S  S  L  V  L  S  H  A  P  V  N  M  D  R  S  C  L  G  Y  L  K  W  D  G  K  T  E  A  E  L  V  E  E  L  R  L  D  S  E  F  V  V  E  S  E  P  L  D  Q  L  G  R  V  K  S  S  K  F  C  L  F  F  Y  E  A  E  S  T  L  D  L  T  E  A  M  A  A  G  C  V  P  V  V  I  V  D  R  P  V  Q  D  F  P  L  M  D  V  L  R  W  S  E  M  A  L  L  I  G  N  R  R  G  G  Q  G  L  K  A  V  L  S  G  V  P  E  D  R  Y  Q  R  M  R  G  L  C  V  A  A  A  H  H  M  V  W  N  A  E  P  Q  A  Y  D  A  F  H  M  V  M  Y  Q  L  W  M  R  R  H  T  I  R  Y  T  R  R  E  E  F  *  C  *  K  F  N  F  F  C  L  *  N  *  Y  M  I  N  N  T  I  I  L  I  N  G  S  I  N  C  M  L  P  L  *  *  L  *  F  V  Y  S  L  K  G  H  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103429" stop="102338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSEFGVKGFSLNGEMATFTFSLCFILFLFVLVHPSSSSSSFSPYLYPSTFSMNYDKMLTSFKVFIYPTTQRIIFFSPSASNFYESLINSAFITQEPEEADLFFVVFSPEISSRSQARLVRELRTKYPYWNRTLGADHFFISPEGIDFSSDRNALELKKNSVQISVFPTVSGKFIPHKDISLSPVSKSSLVLSHAPVNMDRSCLGYLKWDGKTEAELVEELRLDSEFVVESEPLDQLGRVKSSKFCLFFYEAESTLDLTEAMAAGCVPVVIVDRPVQDFPLMDVLRWSEMALLIGNRRGGQGLKAVLSGVPEDRYQRMRGLCVAAAHHMVWNAEPQAYDAFHMVMYQLWMRRHTIRYTRREEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="110354" PGL_stop="105169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110354" e_stop="110225"/>
            <exon e_start="109992" e_stop="109898"/>
            <exon e_start="107289" e_stop="107028"/>
            <exon e_start="106915" e_stop="106719"/>
            <exon e_start="106521" e_stop="106334"/>
            <exon e_start="105672" e_stop="105169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.890" e_score="0.996"/>
          <exon-intron don_prob="0.818" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.962" e_score="0.995"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="110354" e_stop="110225" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109992" e_stop="109898" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="107289" e_stop="107028" e_length="262"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.890">
            <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106915" e_stop="106719" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.818" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="106521" e_stop="106334" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.868" acc_prob="0.962">
            <gDNA_intron_boundary i_start="106333" i_stop="105673" i_length="661"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="105672" e_stop="105169" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110354" stop="110225"/>
              <exon start="109992" stop="109898"/>
              <exon start="107289" stop="107028"/>
              <exon start="106915" stop="106719"/>
              <exon start="106521" stop="106334"/>
              <exon start="105672" stop="105169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110317" stop="110225"/>
              <exon start="109992" stop="109898"/>
              <exon start="107289" stop="107028"/>
              <exon start="106915" stop="106833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG : ATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG : GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG : GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG : AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACG : GATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTGTTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATAAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAACTAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTGCTTAGAAGCAGATTCAAGATTTTAATTTAACGGGTTCA</gDNA_template>
            <first_frame> L  L  P  F  S  S  L  A  L  D  S  P  L  L  *  P  *  K  L  V  N  *  R  N  M  N  P  F  A  N  *  *  T  N  L  S  I  L  L  *  I  *  Q   : D  G  R  L  L  L  D  H  F  L  G  S  F  I  L  S  C  W  S  F  *  C  *  C  W  R  C  *  P  F  V  Q  :  G  L  F  W  P  M  *  R  D  R  M  C  W  R  N  M  L  R  P  L  Q  Y  S  F  K  *  F  F  F  *  *  Q  L  V  L  E  R  A  S  I  P  V  A  E  T  S  K  L  P  K  R  L  P  V  S  L  H  D  S  K  R  N  R  T  S  N  S  W  I  W  A  C  E  I  S  W  E  M  A  I  Q  T  R  L  W  A  S   : G  A  C  F  C  C  F  L  C  T  *  P  C  N  A  S  P  W  M  A  V  L  Y  H  A  Y  L  L  Q  V  T  I  K  C  R  *  D  D  L  L  Q  L  H  E  F  V  A  H  L  C  V  L  V  Y  *  F  M  V  M  E  C  Y  L  P  R  S  :  R  H  G  F  Y  R  K  A  R  L  L  I  C  C  G  V  T  W  I  F  P  D  C  I  S  T  K  K  F  Q  C  K  E  *  G  Y  E  S  S  G  C  C  S  I  A  C  L  H  H  H  S  Y  T  V  P  E  Q  L  S  N  G  L  R :   M  E  H  E  S  L  C  C  D  S  C  F  S  T  S  N  L  V  N  L  G  W  N  K  P  S  S  F  P  V  E  V  V  D  G  G  C  W  R  W  P  R  Y  A  P  R  D  L  R  L  P  S  I  S  R  T  R  R  C  S  C  T  L  A  C  H  H  N  P  S  Y  L  Y  L  V  E  F  H  Q  G  *  R  E  V  W  N  F  Q  L  E  *  K  R  R  V  V  F  L  T  G  F  *  S  F  I  L  L  D  K  F  F  D  I  R  E  L  *  Q  V  L  K  *  *  L  L  L  C  S  F  L  Q  V  E  D  V  C  L  C  *  K  N  *  K  S  K  F  F  S  L  *  K  S  V  I  L  L  R  S  R  F  K  I  L  I  *  R  V   </first_frame>
            <second_frame>  F  Y  L  S  P  H  L  L  W  I  L  L  S  F  S  H  K  N  W  *  I  E  E  I  *  I  L  L  L  I  D  K  Q  I  *  V  S  F  C  E  S  N  K  :  M  A  D  C  Y  W  I  T  F  L  V  V  L  F  C  L  V  G  A  F  D  A  S  A  G  D  A  D  P  L  Y  R :   A  C  F  G  Q  C  K  E  T  G  C  A  G  E  T  C  F  G  H  C  N  T  P  L  N  N  S  S  S  D  D  N  W  Y  L  K  E  P  L  Y  L  W  L  K  Q  A  N  C  L  S  D  C  Q  Y  H  C  M  I  Q  R  E  T  E  R  A  T  H  G  F  G  P  V  K  Y  H  G  K  W  P  F  K  R  V  F  G  L  Q  :  E  P  V  S  V  A  F  S  A  L  N  L  A  M  H  L  H  G  W  L  S  F  I  T  L  I  Y  Y  K  L  R  S  N  A  D  E  T  T  C  Y  S  Y  T  S  L  W  H  I  Y  A  F  L  S  I  N  S  W  L  W  S  A  I  F  H  G  R :   D  M  D  F  T  E  K  L  D  Y  S  S  A  V  A  L  L  G  F  S  L  I  V  S  V  L  R  S  F  S  V  K  N  E  A  T  R  V  L  V  A  A  P  L  L  A  F  T  T  T  H  I  L  Y  L  N  N  Y  Q  M  D  Y   : G  W  N  M  K  V  C  V  V  I  A  V  S  Q  L  L  I  W  S  I  W  A  G  I  S  H  H  P  S  R  W  K  L  W  T  V  V  V  G  G  G  L  A  M  L  L  E  I  Y  D  F  P  P  Y  Q  G  L  V  D  A  H  A  L  W  H  A  T  T  I  P  L  T  Y  I  W  W  S  F  I  K  D  D  A  K  F  G  T  S  N  S  S  K  K  D  E  *  C  F  *  Q  G  F  K  V  L  Y  C  L  I  S  F  L  T  *  E  S  Y  S  K  Y  S  N  S  N  S  F  Y  V  P  S  C  K  *  R  M  F  V  C  A  R  K  T  R  N  Q  S  F  S  A  Y  R  R  V  S  Y  C  L  E  A  D  S  R  F  *  F  N  G  F  </second_frame>
            <third_frame>   F  T  F  L  L  T  C  F  G  F  S  S  P  L  A  I  K  I  G  E  L  K  K  Y  E  S  F  C  *  L  I  N  K  F  E  Y  P  F  V  N  L  T  R :   W  Q  I  V  I  G  S  L  S  W  *  F  Y  F  V  L  L  E  L  L  M  L  V  L  E  M  L  T  L  C  T   : G  L  V  L  A  N  V  K  R  P  D  V  L  E  K  H  A  S  A  I  A  I  L  L  *  I  I  L  L  L  M  T  T  G  T  *  K  S  L  Y  T  C  G  *  N  K  Q  T  A  *  A  I  A  S  I  T  A  *  F  K  E  K  Q  N  E  Q  L  M  D  L  G  L  *  N  I  M  G  N  G  H  S  N  A  S  L  G  F  R :   S  L  F  L  L  L  S  L  H  L  T  L  Q  C  I  S  M  D  G  C  P  L  S  R  L  F  T  T  S  Y  D  Q  M  P  M  R  R  P  A  T  V  T  R  V  C  G  T  S  M  R  S  C  L  L  I  H  G  Y  G  V  L  S  S  T  V   : E  T  W  I  L  Q  K  S  *  T  T  H  L  L  W  R  Y  L  D  F  P  *  L  Y  Q  Y  *  E  V  S  V  *  R  M  R  L  R  E  F  W  L  L  L  H  C  L  P  S  P  P  L  I  Y  C  T  *  T  T  I  K  W  T  T  :  D  G  T  *  K  F  V  L  *  *  L  F  L  N  F  *  F  G  Q  S  G  L  E  *  A  I  I  L  P  G  G  S  C  G  R  W  L  L  E  V  A  S  L  C  S  *  R  S  T  T  S  L  H  I  K  D  S  *  M  L  M  H  F  G  M  P  P  Q  S  L  L  P  I  S  G  G  V  S  S  R  M  T  R  S  L  E  L  P  T  R  V  K  K  T  S  S  V  F  D  R  V  L  K  F  Y  I  A  *  *  V  F  *  H  K  R  A  I  A  S  T  Q  I  V  T  P  F  M  F  L  L  A  S  R  G  C  L  F  V  L  E  K  L  E  I  K  V  F  Q  P  I  E  E  C  H  I  A  *  K  Q  I  Q  D  F  N  L  T  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110248" stop="110225"/>
                    <exon start="109992" stop="109898"/>
                    <exon start="107289" stop="107028"/>
                    <exon start="106915" stop="106719"/>
                    <exon start="106521" stop="106334"/>
                    <exon start="105672" stop="105386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSFCESNKMADCYWITFLVVLFCLVGAFDASAGDADPLYRACFGQCKETGCAGETCFGHCNTPLNNSSSDDNWYLKEPLYLWLKQANCLSDCQYHCMIQRETERATHGFGPVKYHGKWPFKRVFGLQEPVSVAFSALNLAMHLHGWLSFITLIYYKLRSNADETTCYSYTSLWHIYAFLSINSWLWSAIFHGRDMDFTEKLDYSSAVALLGFSLIVSVLRSFSVKNEATRVLVAAPLLAFTTTHILYLNNYQMDYGWNMKVCVVIAVSQLLIWSIWAGISHHPSRWKLWTVVVGGGLAMLLEIYDFPPYQGLVDAHALWHATTIPLTYIWWSFIKDDAKFGTSNSSKKDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="115089" PGL_stop="113660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115089" e_stop="114926"/>
            <exon e_start="114732" e_stop="114708"/>
            <exon e_start="114162" e_stop="113660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115089" e_stop="114926" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114732" e_stop="114708" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="114162" e_stop="113660" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115089" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114074" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG : GGTTACAACAAGCTCCGCCCAACAG : ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</gDNA_template>
            <first_frame> F  I  F  S  S  S  *  I  F  Y  F  P  S  N  Y  I  V  I  S  L  S  I  *  R  E  E  K  W  Q  R  V  V  T  M  L  A  S  C  Y  L  S  Q  C  S  *  F  C  S  L  S  L  T  W  S  R :   V  T  T  S  S  A  Q  Q  :  I  A  S  Q  D  V  L  I  D  A  Q  Q  H  H  T  R  S  H  V  C  S  F  V  K  N  V  V  Q  H  V  Y  V  F  L  K  E  F  M  A  T  N  N  H  A  L  V  T  T  I  G  R  L  K  K  E  N  L  N  A  L  N  *  I  G  Y  *  *  L  G  K  L  I  F  F  S  Q  *  L  M  E  K  I  K  S  T  I  A  I  W  S  Y  C  V  L  Y  C  I  K  L  I  W  S  N  F  D  V  M  F  *  A  F  C  I  S  L  L  V  L  S  C  C  L  S  *  V  V  V  L  E  R  Y  M  I  Y  V  L  G  F  I  *  P  F  S  T  C  S  E  M  K  C  Y  C  N  L  S  F  L  *  R  D  Y  N  N  N  L  F  I   </first_frame>
            <second_frame>  L  S  S  L  L  L  K  Y  F  I  F  L  Q  T  I  *  *  F  H  F  P  F  E  E  K  K  N  G  K  E  W  L  Q  C  *  L  L  V  T  Y  L  N  V  L  D  F  A  H  F  L  *  R  G  R   : G  L  Q  Q  A  P  P  N  R :   L  Q  A  K  M  Y  L  *  M  L  S  N  I  T  Q  E  A  M  Y  V  L  L  S  K  M  L  C  N  M  F  M  C  S  *  R  S  L  W  Q  Q  T  I  M  P  L  L  Q  Q  L  E  D  S  R  R  K  T  *  M  P  L  I  K  *  D  I  N  N  *  G  N  *  S  F  F  P  N  N  *  W  K  R  L  R  V  L  *  L  Y  G  H  I  V  F  C  I  A  L  N  *  F  G  V  I  L  M  *  C  F  K  H  F  V  F  L  Y  L  C  Y  H  V  V  *  A  E  L  *  Y  W  S  D  I  *  S  M  Y  *  D  S  Y  S  R  F  Q  L  A  R  R  *  S  V  I  V  I  F  L  F  Y  N  E  T  I  I  I  T  Y  L  L  </second_frame>
            <third_frame>   Y  L  L  F  F  L  N  I  L  F  S  F  K  L  Y  S  N  F  T  F  H  L  K  R  R  K  M  A  K  S  G  Y  N  A  S  F  L  L  L  I  S  M  F  L  I  L  L  T  F  S  N  V  V  E  :  G  Y  N  K  L  R  P  T   : D  C  K  P  R  C  T  Y  R  C  S  A  T  S  H  K  K  P  C  M  F  F  C  Q  K  C  C  A  T  C  L  C  V  P  K  G  V  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  Q  E  G  K  P  K  C  P  *  L  N  R  I  L  I  I  R  E  I  N  L  F  F  P  I  I  N  G  K  D  *  E  Y  Y  S  Y  M  V  I  L  C  F  V  L  H  *  I  D  L  E  *  F  *  C  N  V  L  S  I  L  Y  F  S  T  C  V  I  M  L  S  E  L  S  C  S  T  G  A  I  Y  D  L  C  I  R  I  H  I  A  V  F  N  L  L  G  D  E  V  L  L  *  S  F  F  F  I  T  R  L  *  *  *  L  I  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115087" stop="114926"/>
                    <exon start="114732" stop="114708"/>
                    <exon start="114162" stop="113981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLFFLNILFSFKLYSNFTFHLKRRKMAKSGYNASFLLLISMFLILLTFSNVVEGYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115037" e_stop="114708"/>
            <exon e_start="114162" e_stop="114088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115037" e_stop="114708" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114162" e_stop="114088" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115037" stop="114708"/>
              <exon start="114162" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAG : ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAAT</gDNA_template>
            <first_frame> F  H  F  P  F  E  E  K  K  N  G  K  E  W  L  Q  C  *  L  L  V  T  Y  L  N  V  L  D  F  A  H  F  L  *  R  G  R  G  K  Y  V  *  H  L  T  Y  K  C  N  F  E  F  I  C  T  L  F  F  Y  T  I  *  L  T  D  Y  S  S  I  Y  V  T  T  P  L  I  S  I  N  Y  Y  I  K  I  *  C  T  F  F  F  L  E  F  M  C  L  F  L  H  F  Y  R  V  T  T  S  S  A  Q  Q  :  I  A  S  Q  D  V  L  I  D  A  Q  Q  H  H  T  R  S  H  V  C  S  F  V  K  N </first_frame>
            <second_frame>  F  T  F  H  L  K  R  R  K  M  A  K  S  G  Y  N  A  S  F  L  L  L  I  S  M  F  L  I  L  L  T  F  S  N  V  V  E  V  N  T  F  N  I  *  R  I  N  V  I  S  N  L  Y  A  P  Y  F  S  I  Q  Y  D  *  L  I  T  L  R  S  M  *  L  H  H  *  S  Q  L  I  I  T  *  K  Y  N  V  P  F  F  F  W  N  L  C  V  F  F  F  I  F  T  G  L  Q  Q  A  P  P  N  R :   L  Q  A  K  M  Y  L  *  M  L  S  N  I  T  Q  E  A  M  Y  V  L  L  S  K   </second_frame>
            <third_frame>   S  L  S  I  *  R  E  E  K  W  Q  R  V  V  T  M  L  A  S  C  Y  L  S  Q  C  S  *  F  C  S  L  S  L  T  W  S  R  *  I  R  L  T  F  D  V  *  M  *  F  R  I  Y  M  H  L  I  F  L  Y  N  M  I  N  *  L  L  F  D  L  C  D  Y  T  I  N  L  N  *  L  L  H  K  N  I  M  Y  L  F  F  F  G  I  Y  V  S  F  S  S  F  L  Q  G  Y  N  K  L  R  P  T   : D  C  K  P  R  C  T  Y  R  C  S  A  T  S  H  K  K  P  C  M  F  F  C  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0027B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 43256 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2059 bytes was the average size of a spliced alignment
$ 24848 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1553 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:51:27
-->
