<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:44:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323729" ref_strand="+" ref_description="SGN-E323729 [cTOC-2-J16]">
      <seq>acgcagtcacttgccttatccaatcagtcagaaggatttccagaatctgctattcattttttcttggtacctcttgctggattgtgggatatatctaaggcaaacggaaaaacaccaaatgattataggcacataaagttatctttttcggaagagttgaaggagtttggacttcgtttgctgtataaagatgaatctaagctcaaggccctgtgtgaaatgacgggaaataatgatgaaccaacagaacactgcatcgtgaaaaggaggggtcagtatgatgatgccagatgctcttcttctaagaaacaaaggtcacagctctagtatttgtctttgagaatctgctgcaacaaccagtctcttcacaaactttgcagctcttgtctctctgcttctgccgagccatgaaagaagtagctatggatggttatgcaaaaatgaatgctgcgatcgctaaggctgaaaaggaagagcgggagtgggatgagattgatcgaatgccgtttggacagcgaatgaactcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="13685" stop="8122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13385" g_stop="12976" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12975" i_stop="8544" i_length="4432">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8543" g_stop="8422" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="532" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E323729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13385" e_stop="12976"/>
          <exon e_start="8543" e_stop="8422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCAGTCACTTGCCTTATCCAATCAGTCAGAAGGATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTCTTGCTGGATTGTGGGATATATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATAAAGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGCTGTATAAAGATGAATCTAAGCTCAAGGCCCTGTGTGAAATGACGGGAAATAATGATGAACCAACAGAACACTGCATCGTGAAAAGGAGGGGTCAGTATGATGATGCCAGATGCTCTTCTTCTAAGAAACAAAGGTCACAGCTCTAGTATTTGTCTTTGAGAATCTGCTGCAACAACCAGTCTCTTCACAAACTTTGCAGCTCTTGTCTCTCTGCTTCTGCCGAGCCATGGTGAGTTAACTGATGTGAACAAGCTTAAACTTTTGATACTCAAATCATATCCTAGGATCATGCGATCTTAATTAAATTCATAACTTATAGTAGTCAAAATCAAGAATTTGAACTTGAGAATTAGTAAACTCTAAAATGAAAAGGTGAATACTTCAACTAATACCAAATAGTTAGTTTTCCAATTTGAAGAGATGTCGGTTTAGAAAGATAAATAGAGCTAACACTTGCTATAAGCGCTTCTTACTATAGGCGTTGAAGTCAGTCTGCCTGAGTATGTAAACTGTGTGGTTGATGATAACAAATAAACCTTCTACATCAGCCAATTTTTCTTCCTGCTTTACCAATCCAAGAATTTTCATGTATTGTATCGGAAAAGAAATGTTGCTTCTAAAGTTCTATGCTATACTCAAAATTGTTTTTTCGACTTGTTCATTTATGGTTCTTCTGTTTACATATGCCTAAAACTCTTTGGCTCTGTGTGTGATATTTGACCATCTATCAATCCCCTATAGGCGGCGGAAAATGGTATATTCTCAACTTGATTTGTAGTTGCTTCTATGTCAACATTAGTTCCTTAGGTAAGGGAAACATTGTCTGAGTTCTTCATCTGATTATGTGCTGCATTAGTATTACATTAACAAATTGGTCAATTCTATAATCAAATAATGTTGTGTATTCTTCTTTGGATTTTCAAAAAGATAGAAAATCTTTTAGGCCTCATTTGTTTGCACTTAATGGAGGTCAGAATCTTAATTAGTCCATTAAGTTCATTTATTTTATTTTTGGAAAAATCTCTTAATGGGTCTGAAGAGATCTGAACGAATCAGATCTGTAGGACATTCTTAATAACATTCAGACTCATTTGATAAGTTATTAAATAATAAATTGTAGCTTTCTACTTTAGATGTGTCTTTTTATCTCATAACTAAAAACTCTATTTTTCACTTTTCTCAATCATATACCATTTTTCCCAACCGGTAAGTTTTCATAAAAATTTCTTGTATTGATGTGTGTCAAGAACACTTGGTCGCAATAATATTTTTGGTGTATTGTTGTTTATCAAGGCTTTTGAATGAAAAAATAGTACTCCAAATCATGATTATTAGAACTTTTTTTAAATCAAAAGTGATACATTTTGTTGAAATGAAAATATAATAATATTTTATTAATATAATATTCATATGTGTATTCAGAAGCGGTGATTTATTATTTGATAACTTATTTAAATGAGTCTGAATGTTGTTAAGAGACTCCTACAAATATGATTCATTTAGATCTCTTCAGACCCATTAAGAGACTTTTTAAAAAATAAACCAAACGAACTTAATGAGCTGAATCTGAATAACTAAAATTCAGACCTAAAACTCAAATGTACTTAATGGGCTGAATCTGAATGATTAAGATTTAGACCTCCATTAAGTGCAAACAAATGAGGCCTAAGTGTGTTTGTTTTTAAGGACTGAATCTTAATTATTCAGATTCAGTTCATTAAGTTCGTTTGTTTTATTTTCTTATAAGCCTCTTCATGGGTCTGAATATATCTGAAAGATCTGTAACATCCTCTTAACACCATTCAGACTCGAAAATAAGATTTCTATCTTAATTCAACTACATCACAACAACTCATGAAAGTTGTTTTCTTATTTAATTAATGTTAATTACATGCTTACCGTTATAATTTCCTTTTTTCTTATTAACTTAATATGTCATTTACTTTCATAAATCAATCAATATATTTGAATTGATAAGAACTCCCATCATATAATATTTAGCACGATTTCAGAAAATAAAAAATATTAGTTGTTTGATCGATAATAATAATAAATGTCTATTATAAAATAATATATTTTCCTAAACAGTATACTACTACTCTATATAAACTATTTTATATTGCATTATATTAAATTCTCAAAGTTTTTGAGTGCAAAAGTAGTCTTATTAATGTTGTAACTTGATGTTTCATATTACTTTGTTACGTTAAAAATGTACAAAATTTCTATTAAAAAAAACTATTTTACTAACATGAGTTATAATATTTTATTGATATAACATTTAATTTCATAGACACATTCAGCTATTGAAAACAAACATTCACATGTTCAGATTCAGAGACAATATCTTAATATTCATATGTTTATTCAAATTTACACATTTAGATCTTAATATTCAAATGTGTATTCAGATTCAGACGTCTTAATCTTAATTAGAGTCGTCAAATAAATGGGATTGGCCCGCGAGCCTGCCCAACCCAACCCAACCCTTGAAATAAGTGGGGTTGAGCTTAATATTTTTGGCCCATCTATGAACGAGGCTTTTTAGCCCGCCCCATTTGGCCTCTTAGGACCAACCCGCAAGCCTCAGAGACCAGCCCGTGGGCTATAAATTTTTTTAATTTTTTTTATATATATTTTTAATAGTGTTTTAGTTGTAAAGATTTTATGAATAAATATTTTGAAAAACAAATAATCAAGTATTTTGTAATATCATCTTGCATGATGAATTGTAGATGAAGATGAACTTCTTAAGAAAATAATGTCACATGTTGATTCAAATGTCATCGATGATGAAAGTAGAAGAGGAGTTATAAAACGTTACTTAATAAGTCATGTAATATTTAGAAATTTAGATTTGTTAAGTATTTAGACTGCCTTGTGTTGCTGGAAATTTTTTAAACCAGCTAGTTTTTTGTGGGAGAAATGATGGAATGATCAACATTTATCCGCTAAATCTTATGTTGGCTATTATATATTTTTTCAAGTATTCACCAAAGTGTGTGATTCATAAATATATTTTTGTAAGTATTCATCGAAGTGTGTGATTTATAAATAAATTCATATATGAATTGATGTTGTGTTCATAGACGTCAAAATTCAGTACTCTTTCTAAGAGAGTAATATTGTTCATTTTTTGGTTGAAGGGTCAACCCGTCCCAATCCGTGGCCTGCTTAGGGCTGGGTTGAGCTGCTATTTTATTGATCCTTTAATTAAAAGGGTCAGCACACTCCAACCACTTAACTCTCTAGTCCGTTAGGATTGGGTTGGATTGGGACAACCAATTTTGACATCTCTAATCTTAATTAAAACAAATAAGGCCTAAGTATCATAAAATATAAGTATTTATGATTAAATTACAATTTAAATTAAAATATGATTACTAAAACAAATTAAAATTATAAATAAGAAGATTTTCAAGGTTGTCTTATTTAAATTTTAATTGAGTTTACAATAAAATTCAATTGTGATTTATAATTAGATTTATTTATTTTAATATAAGTAGTATCTTAAGGTTATAAGTTTCAATCAATTAATACACTTTTATTAATAAAAGATGTAGAGATTTAAAAAAGAAAAATGATTAAGAAAAGAAGAATAAGTCATAACAAATCATGAATATCGTTTTAACGTATTTTCTAGCTTACACACACTATAAACAGAGTGAAATCACTCTTCATACTACGCTTTACACTATATAGAATTTTAAATCGAAAATATTATAGATCTTAAGAGGTGAAACAAAGTTTTTTTTTTCTTTTAACTTTCTCGTTCATTTTTTACTCCTTTTTTTCCTTAATTTTCTTTAATTCCAAAGCAATGGTAATGGATTCTGAATTAAATTGTTTGACCGCCCTGTAAATTTTTAATCATGTAAATCTCTCTTAAAATATTTATTTGACCATGCATTTAATTTTTTTGACCATATATTTTAAATTGTTTGACTATATATTTTAGAAATTTGTCTTCAATTTTTTCAATTATAGACCAACTTTATAGAGAAATTCACTTCCACCCACAAAATTTTAATTTTTTCTCAAGACCGTCCTTGTGAATTTTTAATTAAAATTTGTAAAACTATCTTTAAATGTTTATTTGACTATACACTTGACCTGTTTGACCATATATTTTGAAAATCTCTTCAATTATTTTTTAATTATGAACCAATTTTTGAGAAAAAAATTTCACTTCTATCGATAAAACTCTAATTTTTTCTCCTAGACCATCCTTGTATGAGCAAATTACATCTACAAAAATAATAATAATACATTTATTAACTATTATTTCGATAAACAACTAAACAACACAATTTTTCTTTGTCAAGATAAGTTACGTAATCATAATTGTCTAGATAAGTTACATATTTAATCGATCGACCCGGAAAAAAAACCCAAAATAAACTAAAGCCCAAATTAGAAAAATAGCGCCAAAACACCTTTATGTTTGCAAAATCCATTTTCTCTCTCATTCATCTCTGTTGCAACAAAATTCTCTCACAAAAAACCAAAAAAGCTCTGCAAAAAGGTAAAATTCTTCTTCTTCTTCTCTGATTCTTCACATTTTTTCTGTGCATTTCATTGTATGAACGTAGAAAAATTCATTTGTGCATTGAAACCCTAGAAAAACAACGATTTCTTTTTTGTTTTCTTGATTGATATAGAAAGAAGTAGCTATGGATGGTTATGCAAAAATGAATGCTGCGATCGCTAAGGCTGAAAAGGAAGAGCGGGAGTGGGATGAGATTGATCGAATGCCGTTTGGACAGCGAATGAACTCACTGAT</genome_strand>
        <mrna_strand>ACGCAGTCACTTGCCTTATCCAATCAGTCAGAAGGATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTCTTGCTGGATTGTGGGATATATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATAAAGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGCTGTATAAAGATGAATCTAAGCTCAAGGCCCTGTGTGAAATGACGGGAAATAATGATGAACCAACAGAACACTGCATCGTGAAAAGGAGGGGTCAGTATGATGATGCCAGATGCTCTTCTTCTAAGAAACAAAGGTCACAGCTCTAGTATTTGTCTTTGAGAATCTGCTGCAACAACCAGTCTCTTCACAAACTTTGCAGCTCTTGTCTCTCTGCTTCTGCCGAGCCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGTAGCTATGGATGGTTATGCAAAAATGAATGCTGCGATCGCTAAGGCTGAAAAGGAAGAGCGGGAGTGGGATGAGATTGATCGAATGCCGTTTGGACAGCGAATGAACTCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374695" ref_strand="+" ref_description="SGN-E374695 [TUS-14-D24](-)">
      <seq>attacagattgaatcattgctccaatcggcgtatattgtgtctaattgccgtggaaattctggcagttgtgtaagcttcttgcaatctaataagtccaaggattgaagagcacaaagtcgggctatgctttgaggcaaatgctcgaaattatttcccctcagattcaacgctttcaaacagtgtaggcatccaatgtctatcggaagtccttcatttattagattgcagtaactgagatccagatgttccaatgagcgcaatccttcattcactcgagggaatgaaaagtacactccgttttcgaggcctacttctgatttttgttttgcaaaagtcaaaactttaagcctgttcaagcggacgatggaagacggaggttgtgagattagagtacatctggcctcaagtatctccaggttttctaaatcacctatctcttttggcaagattttgagttttgagcagtcggacacttttagctttaccaaacgttttaactcgccaatgctgcttggaagtgttgcaaggttttgcatgccaatcaaatctagttctgtaagacaagactggtgctgaataatagctgatggtagtttccttatcccagaacgttgcacttgaatctttatctctggcttcaattttccccggatcttcgggaatttctctaaattagagcaaccttgtagatatagacattcaagagattcccagcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="13341" stop="14661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13641" g_stop="14361" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E374695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13641" e_stop="14361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACAGATTGAATCATTGCTCCAATCGGCGTATATTGTGTCTAATTGCCGTGGAAATTCTGGCAGTTGTGTAAGCTTCTTGCAATCTAATAAGTCCAAGGATTGAAGAGCACAAAGTCGGGCTATGCTTTGAGGCAAATGCTCGAAATTATTTCCCCTCAGATTCAACGCTTTCAAACAGTGTAGGCATCCAATGTCTATCGGAAGTCCTTCATTTATTAGATTGCAGTAACTGAGATCCAGATGTTCCAATGAGCGCAATCCTTCATTCACTCGAGGGAATGAAAAGTACACTCCGTTTTCGAGGCCTACTTCTGATTTTTGTTTTGCAAAAGTCAAAACTTTAAGCCTGTTCAAGCGGACGATGGAAGACGGAGGTTGTGAGATTAGAGTACATCTGGCCTCAAGTATCTCCAGGTTTTCTAAATCACCTATCTCTTTTGGCAAGATTTTGAGTTTTGAGCAGTCGGACACTTTTAGCTTTACCAAACGTTTTAACTCGCCAATGCTGCTTGGAAGTGTTGCAAGGTTTTGCATGCCAATCAAATCTAGTTCTGTAAGACAAGACTGGTGCTGAATAATAGCTGATGGTAGTTTCCTTATCCCAGAACGTTGCACTTGAATCTTTATCTCTGGCTTCAATTTTCCCCGGATCTTCGGGAATTTCTCTAAATTAGAGCAACCTTGTAGATATAGACATTCAAGAGATTCCCAGCAAACA</genome_strand>
        <mrna_strand>ATTACAGATTGAATCATTGCTCCAATCGGCGTATATTGTGTCTAATTGCCGTGGAAATTCTGGCAGTTGTGTAAGCTTCTTGCAATCTAATAAGTCCAAGGATTGAAGAGCACAAAGTCGGGCTATGCTTTGAGGCAAATGCTCGAAATTATTTCCCCTCAGATTCAACGCTTTCAAACAGTGTAGGCATCCAATGTCTATCGGAAGTCCTTCATTTATTAGATTGCAGTAACTGAGATCCAGATGTTCCAATGAGCGCAATCCTTCATTCACTCGAGGGAATGAAAAGTACACTCCGTTTTCGAGGCCTACTTCTGATTTTTGTTTTGCAAAAGTCAAAACTTTAAGCCTGTTCAAGCGGACGATGGAAGACGGAGGTTGTGAGATTAGAGTACATCTGGCCTCAAGTATCTCCAGGTTTTCTAAATCACCTATCTCTTTTGGCAAGATTTTGAGTTTTGAGCAGTCGGACACTTTTAGCTTTACCAAACGTTTTAACTCGCCAATGCTGCTTGGAAGTGTTGCAAGGTTTTGCATGCCAATCAAATCTAGTTCTGTAAGACAAGACTGGTGCTGAATAATAGCTGATGGTAGTTTCCTTATCCCAGAACGTTGCACTTGAATCTTTATCTCTGGCTTCAATTTTCCCCGGATCTTCGGGAATTTCTCTAAATTAGAGCAACCTTGTAGATATAGACATTCAAGAGATTCCCAGCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687692" ref_strand="+" ref_description="SGN-E687692 [T3_tus_79_H16]">
      <seq>ccgttttgcaaaaggaaaggggagaactcagcagactatggcttactcaagatttcgaaaaattctcaaatgcaaaaatacaagggaccaaggcaatcgaaacaatctggataccagaaattcaagacctaagctttaaaaaaaaaggccatgaaagacgtggaaaagcttaggatattatacatcaatggttttcatacacatgatagctccaacgatcagtaccttcccagcaacttgcgttggttcgactgttgtaagtatccttgggaatcattgccagccaaatttgatcctgacatgcttgttcatcttgatctccagcagagttcactgtttcatttatggaccggaacaaagaaatttccttttctacggaggctggttctcagccgctgtgctaacttgaggcgaacaccagatttctcggatatgccaaatttggagtatttgggtctaaaagagtgtaccaatcttaaagaggttcaccattccttgagatgttccaaaaaactcaataagttaaatttgagagactgtaaaagcctcgagagttttagctatgtttgctgggaatctcttgaatgtctatatctacaaggttgctctaatttagagaaattcccgaagatccggggaaaattgaagccagagaaaaaaattcaagtgcaacgttctgggataaggaaactaccatcagctattattcagcaaccatcttgtcttacagaactaaatttgattggcatgcaaaacctttgcacacttccaagcagcattggcgagttaaaacgtttggtaaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="16036" stop="13818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15741" g_stop="15659" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15658" i_stop="15234" i_length="425">
            <donor d_prob="0.614" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15233" g_stop="14958" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="360" r_length="277" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14957" i_stop="14565" i_length="393">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14564" g_stop="14118" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="807" r_length="447" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E687692" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15741" e_stop="15659"/>
          <exon e_start="15233" e_stop="14958"/>
          <exon e_start="14564" e_stop="14118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTGCAAAAGGAAAGGGGAGAACTCAGCAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAAGTAAGTGGGGGCCAAAACTTACCTTATCAATCCTCGGTCTGTTAGGCACTTGTTCATCGATTACTTTTTGTTTGAAAGATGACAATTACTGGTTCTATTTAAATTACAGTTTCCTTCTATCACAATGGTGAAAAACTTTTCGACTCGATTTTAAAGAACTTCTCAAGAAAATGTACTTCTTTACAAAATTAATTGCTCAAAGTATTTCTCTTAAGCAACATATTTCTTGAGAAAGACCTGACTAATATTGTACCTTGATTTTTCTAGTGGCACTAGTTATTCAAGAACTTCAAGTGCAATAGTAAATAAACGGAACATGAGAAATTTGGCATTGCGAGAAGTGAGAAAGTAGTCATACTGAGTGCGGATTTTATTTATGCAGATATTTGAAGTTATACTTTGTAGACTAATGATTCTTTTGTCAGGGGACCAAGGCAATCGAAACAATCTGGATACCAGAAATTCAAGACCTAAGCTTT-AAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACCGGAACAAAGGTAAAATAACTGAATTCAATTTTATTTTTATTTTGATCAAATACATAGATAGACACTCAAAGTTGACAATAACTTTTGGATATACATCTCAACTGGACCATAGATACACCTTTTATTGATGAGTTAATGGTCAAAAACACACCTAATGTATCCCGATTAGACTTTTTAAAGAATCAAATACTTTTATCTTTAGCCAGGGGCAGATCCAAAGGCTTATTACAAGTTCACGTGAATTTAGTAGCTTTTGAAAAACGAAGAAGAAATGAAACACAATAGTTTGTAGATTCACAAATAGCCACTAGCCAAATCTAAATCCACCCTAATTATATGATTATTCTTTTACCTAACATTTCTTATTTTCCTACCTCATTCTTTTACTGTTTTGAATAGCAGAAATTTCCTTTTCTACGGAGGCTGGTTCTCAGCCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGTTCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCGAGAGTTTTAGCTATGTTTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCAGAGATAAAGATTCAAGTGCAACGTTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCACCAGTCTTGTCTTACAGAACTAGATTTGATTGGCATGCAAAACCTTGCAACACTTCCAAGCAGCATTGGCGAGTTAAAACGTTTGGTAAAGCTA</genome_strand>
        <mrna_strand>CCGTTTTGCAAAAGGAAAGGGGAGAACTCAGCAGACTATGGCTTACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACCAAGGCAATCGAAACAATCTGGATACCAGAAATTCAAGACCTAAGCTTTAAAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACCGGAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCCTTTTCTACGGAGGCTGGTTCTCAGCCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGTTCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCGAGAGTTTTAGCTATGTTTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCAGAGAAAAAAATTCAAGTGCAACGTTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCAACCATCTTGTCTTACAGAACTAAATTTGATTGGCATGCAAAACCTTTGCACACTTCCAAGCAGCATTGGCGAGTTAAAACGTTTGGTAAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323006" ref_strand="+" ref_description="SGN-E323006 [cTOB-30-B18]">
      <seq>attgctataggaaaggggagaactcagcagactatggctcactcaagatttcgaaaaattctcaaatgcaaaaatacaatggaccaaggcaatcgaaacaatctggataccacaaattcaagacctaacctttaaaaaaaaaggccatgaaagacgtggaaaagcttaggatattatacctcaatggttttcatacacatgatagctccaacgatcagtaccttcccagcaacttgcgttggttcgactgttgtaaatatccttgggaatcattgccagccaaatttgatcctgacatgcttgttcatcttgatctccagcaaagttcactgtatcatttatggaccggaacaaagaaatttccttttctaccgacgctggatctcaaccgctgtgctaacttgaggcgaacaccagatttctcggatatgccaaatttggagtatttgggtctaaaagagtgtaccaatcttaaagaggatcaccattccttgagatgttccaaaaaactcaataagttaaatttgagagactgtaaaagcctccagagttttaactatgattgctgggaatctcttgaatgtctatatctacaaggttgctctaatttagagaaattcccgaagatccggggaaaattgaagccacatatagagattcaagtgcaacgttctgcgatcacgagactaccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="16037" stop="13927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15737" g_stop="15659" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15658" i_stop="15234" i_length="425">
            <donor d_prob="0.614" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15233" g_stop="14958" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="356" r_length="277" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14957" i_stop="14565" i_length="393">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.834" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14564" g_stop="14227" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="694" r_length="338" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E323006" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15737" e_stop="15659"/>
          <exon e_start="15233" e_stop="14958"/>
          <exon e_start="14564" e_stop="14227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAAAAGGAAAGGGGAGAACTCAGCAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAAGTAAGTGGGGGCCAAAACTTACCTTATCAATCCTCGGTCTGTTAGGCACTTGTTCATCGATTACTTTTTGTTTGAAAGATGACAATTACTGGTTCTATTTAAATTACAGTTTCCTTCTATCACAATGGTGAAAAACTTTTCGACTCGATTTTAAAGAACTTCTCAAGAAAATGTACTTCTTTACAAAATTAATTGCTCAAAGTATTTCTCTTAAGCAACATATTTCTTGAGAAAGACCTGACTAATATTGTACCTTGATTTTTCTAGTGGCACTAGTTATTCAAGAACTTCAAGTGCAATAGTAAATAAACGGAACATGAGAAATTTGGCATTGCGAGAAGTGAGAAAGTAGTCATACTGAGTGCGGATTTTATTTATGCAGATATTTGAAGTTATACTTTGTAGACTAATGATTCTTTTGTCAGGGGACCAAGGCAATCGAAACAATCTGGATACCAGAAATTCAAGACCTAAGCTTT-AAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACCGGAACAAAGGTAAAATAACTGAATTCAATTTTATTTTTATTTTGATCAAATACATAGATAGACACTCAAAGTTGACAATAACTTTTGGATATACATCTCAACTGGACCATAGATACACCTTTTATTGATGAGTTAATGGTCAAAAACACACCTAATGTATCCCGATTAGACTTTTTAAAGAATCAAATACTTTTATCTTTAGCCAGGGGCAGATCCAAAGGCTTATTACAAGTTCACGTGAATTTAGTAGCTTTTGAAAAACGAAGAAGAAATGAAACACAATAGTTTGTAGATTCACAAATAGCCACTAGCCAAATCTAAATCCACCCTAATTATATGATTATTCTTTTACCTAACATTTCTTATTTTCCTACCTCATTCTTTTACTGTTTTGAATAGCAGAAATTTCCTTTTCTACGGAGGCTGGTTCTCAGCCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGTTCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCGAGAGTTTTAGCTATGTTTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCAGAGATAAAGATTCAAGTGCAACGTTCTGGGATAAGGAAACTACCATC</genome_strand>
        <mrna_strand>ATTGCTATAGGAAAGGGGAGAACTCAGCAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCAAGGCAATCGAAACAATCTGGATACCACAAATTCAAGACCTAACCTTTAAAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACCTCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAATATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAAAGTTCACTGTATCATTTATGGACCGGAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCCTTTTCTACCGACGCTGGATCTCAACCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGATCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCCAGAGTTTTAACTATGATTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCACATATAGAGATTCAAGTGCAACGTTCTGCGATCACGAGACTACCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200242" ref_strand="+" ref_description="SGN-E200242 [cLEC-12-A5]">
      <seq>tccctcaagtggatgaagggttacggtcattggaacatctagatctcagttactgcaatctaatagatggaggacttccagaagatattggttgcctacgctctttgaaagagttggatctctgtggaaataatttcgagcatttgcctcgaagcatagcacaacttggcgctcttcgattcttgaacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="23062" stop="22270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22762" g_stop="22570" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E200242" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22762" e_stop="22570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCAAGTGGATGAAGGGTTACGGTCATTGGAACATCTAGATCTCAGTTACTGCAATCTAATAGATGGAGGACTTCCAGAAGATATTGGTTGCCTACGCTCTTTGAAAGAGTTGTATCTCTGTGGAAATAATTTCGAGCATTTGCCTCGAAGCATAGCACAACTTGGCGCTCTTCGATTCTTGAACTTATC</genome_strand>
        <mrna_strand>TCCCTCAAGTGGATGAAGGGTTACGGTCATTGGAACATCTAGATCTCAGTTACTGCAATCTAATAGATGGAGGACTTCCAGAAGATATTGGTTGCCTACGCTCTTTGAAAGAGTTGGATCTCTGTGGAAATAATTTCGAGCATTTGCCTCGAAGCATAGCACAACTTGGCGCTCTTCGATTCTTGAACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552069" ref_strand="+" ref_description="SGN-E552069 [cTSB-2-L5]">
      <seq>gtgtcgcgctgttacttcaccgtcttttgacaatttggctgccaccgctggtcaagttggcggtggagccaccaaaagtggtggtacaaaagatgttactatagttgtacatgatggcataaatggtaaggtaaatactactactactagtgtttactcatcatcatcaactagctatgttgagaataataaatatggtatctgcaaaatggcggttacattagagtcagtaaacgatgatattcgtgttaatgatggtggtagtgataataacgatgcaaccggtggtgctagccatgctaaaataagtaatagtattaatagctaagcttctatgtgttgggaaagagggtttgtgcgggggatgatatccctactcatattattatactattgttcgattttattattattgttatatactttgtttcaattatcgtattatcaattcttcatttgaacagatcgacttttttatttgatatcaatcttattatattatactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="37698" stop="38803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37998" g_stop="38502" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="517"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E552069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37998" e_stop="38502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</genome_strand>
        <mrna_strand>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552216" ref_strand="+" ref_description="SGN-E552216 [cTSB-3-D2]">
      <seq>gtgtcgcgctgttacttcaccgtcttttgacaatttggctgccaccgctggtcaagttggcggtggagccaccaaaagtggtggtacaaaagatgttactatagttgtacatgatggcataaatggtaaggtaaatactactactactagtgtttactcatcatcatcaactagctatgttgagaataataaatatggtatctgcaaaatggcggttacattagagtcagtaaacgatgatattcgtgttaatgatggtggtagtgataataacgatgcaaccggtggtgctagccatgctaaaataagtaatagtattaatagctaagcttctatgtgttgggaaagagggtttgtgcgggggatgatatccctactcatattattatactattgttcgattttattattattgttatatactttgtttcaattatcgtattatcaattcttcatttgaacagatcgacttttttatttgatatcaatcttattatattatactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="37698" stop="38803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37998" g_stop="38502" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="517"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E552216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37998" e_stop="38502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</genome_strand>
        <mrna_strand>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244274" ref_strand="+" ref_description="SGN-E244274 [cLEF-37-C23]">
      <seq>tgcgttgggtgtggaaacgttgtacttacataggcaatgatgacagtgccacgtggcctccagcaacctatgatgaatttgaacctattcctcgtctttgccggacaattcttgctgtttatgaagatgaccttcataacccaaagtttccacctgagggaggatataggcttaacgctgattgggtggtgaagcgtgtgacgtatcgagacacactcggtaatgctccaccttatttgatttaccttgatcatgagcaccatgagattgttgtagccattacgggtttaaagtaggttaaagaaagggattataaagtgttgatggataataagctggggaagcagatgtttgatggtgggtatgtgcatcatgggttgatgaaggcagcaattcggatgttgaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="52065" stop="54023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52365" g_stop="52583" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52584" i_stop="53531" i_length="948">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53532" g_stop="53723" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="411" r_length="192" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E244274" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52365" e_stop="52583"/>
          <exon e_start="53532" e_stop="53723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTTGGGTGTGGAAACGTTGTACTTACATAGGCAATGATGACAGTGCCACGTGGCCTCCAGCAACCTATGATGAATTTGAACCTATTCCTCGTCTTTGCCGTACAATTCTTGCTGTTTATGAAGATGACCTTCATAACCCAAAGTTTCCACCTGAAGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCGGTAAACTTTTTATTCGCATTGCTGAATTAGTTTCTTAGGACAGTGTCTAAGACGACTCAACTTGTTTGGATAGTTGTTACCTATTGTATTGGATTGTTAGTATAAGTATAATGTTTGTTTTGACTTTTGAATGATAATCGTATCGTATCATTGATCCCTTCATTAACAGCTTGTTTGGATGGTTGTTACGTAATTGTGTAGTGTTGTTAGTTTAACTACCATGTTTGTTTTGATTGTTACTTAATCATATCATTAAATCCGTCATTAACACCTTATTTGGATGGTTGCTACCTATCGTATCATATTGTGTTGTTAGTTTGAATACGATGTTTGTTTTGATTGATACGTAAATGTTATTGTATTGTATCATTAATTCCGTTGTTGATAAGTTAGATGAAAAGTTTCATTTTGGTGTGATCGCGTCGTTACCTTGTTTTTCTTCTTATATTGTCTTTGCTTATTATTTAACGAACCTATTTTATCCTTTTCTCACAATTTTCTATAATAACTTTGCCCCATATCCTACTTTTATTTATAATACTGTATGTTGATTCTTGAAAGTGTGGCATTACGTAATGACAGAAAACGATACAATCTATACAAACATTGTAAGCATCAAAACAGCACAATACTATATGGAGAAAATGATACATGTAGGGTAGGAGCTAGTTACAAGGGAATTCAATTGAATCCCTTAGCCTGAAAATGAAATTGTGCAAAAAGGGAAAAAGATGTGAGAAATTTTTTGTATAGTGTTAAAGGGGGTTTCAAAGTTAGTTTAAGGTGCAGGTTCAAATCATTGGTGGTGTGATGTTTTAGTATTTCTGAATCCCCTTACGTAATTTCTTGCTCCGCCATTGTGTGCATTTACTCATAAAAAATTATATTGCTTCTTTTTTATTTATTTCCAACAATATTTTCATTTAATATTGTTTATTTTTCCCACAGGTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTAGGGGTTTAAATTTGGTTAAAGAAAGTGATTATAAAGTCTTGATGGATAATAAGCTTGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAG</genome_strand>
        <mrna_strand>TGCGTTGGGTGTGGAAACGTTGTACTTACATAGGCAATGATGACAGTGCCACGTGGCCTCCAGCAACCTATGATGAATTTGAACCTATTCCTCGTCTTTGCCGGACAATTCTTGCTGTTTATGAAGATGACCTTCATAACCCAAAGTTTCCACCTGAGGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTACGGGTTTAAAGTAGGTTAAAGAAAGGGATTATAAAGTGTTGATGGATAATAAGCTGGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGATGAAGGCAGCAATTCGGATGTTGAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336332" ref_strand="+" ref_description="SGN-E336332 [cTOE-10-J19]">
      <seq>ccaaagtttccacctgaaggaggatataggcttaacgctgattgggtggtgaagcgtgtgacgtatcgagacacactcggtaatgctccaccttatttgatttaccttgatcatgagcaccatgagattgttgtagccattaggggtttaaatttggttaaagaaagtgattataaagtcttgatggataataagcttgggaagcagatgtttgatggtgggtatgtgcatcatgggttgttgaaggcagcaatttggatgttgaataaagaatccgagactttgaaaaggctttgggttgagaatgggaagagttacaggatgatatttgttggacattctttgggttctggagttgcatcattgttgactataattgcggcgaatcacggggatagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="52205" stop="54153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52505" g_stop="52583" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52584" i_stop="53531" i_length="948">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53532" g_stop="53853" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="401" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E336332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52505" e_stop="52583"/>
          <exon e_start="53532" e_stop="53853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTTTCCACCTGAAGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCGGTAAACTTTTTATTCGCATTGCTGAATTAGTTTCTTAGGACAGTGTCTAAGACGACTCAACTTGTTTGGATAGTTGTTACCTATTGTATTGGATTGTTAGTATAAGTATAATGTTTGTTTTGACTTTTGAATGATAATCGTATCGTATCATTGATCCCTTCATTAACAGCTTGTTTGGATGGTTGTTACGTAATTGTGTAGTGTTGTTAGTTTAACTACCATGTTTGTTTTGATTGTTACTTAATCATATCATTAAATCCGTCATTAACACCTTATTTGGATGGTTGCTACCTATCGTATCATATTGTGTTGTTAGTTTGAATACGATGTTTGTTTTGATTGATACGTAAATGTTATTGTATTGTATCATTAATTCCGTTGTTGATAAGTTAGATGAAAAGTTTCATTTTGGTGTGATCGCGTCGTTACCTTGTTTTTCTTCTTATATTGTCTTTGCTTATTATTTAACGAACCTATTTTATCCTTTTCTCACAATTTTCTATAATAACTTTGCCCCATATCCTACTTTTATTTATAATACTGTATGTTGATTCTTGAAAGTGTGGCATTACGTAATGACAGAAAACGATACAATCTATACAAACATTGTAAGCATCAAAACAGCACAATACTATATGGAGAAAATGATACATGTAGGGTAGGAGCTAGTTACAAGGGAATTCAATTGAATCCCTTAGCCTGAAAATGAAATTGTGCAAAAAGGGAAAAAGATGTGAGAAATTTTTTGTATAGTGTTAAAGGGGGTTTCAAAGTTAGTTTAAGGTGCAGGTTCAAATCATTGGTGGTGTGATGTTTTAGTATTTCTGAATCCCCTTACGTAATTTCTTGCTCCGCCATTGTGTGCATTTACTCATAAAAAATTATATTGCTTCTTTTTTATTTATTTCCAACAATATTTTCATTTAATATTGTTTATTTTTCCCACAGGTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTAGGGGTTTAAATTTGGTTAAAGAAAGTGATTATAAAGTCTTGATGGATAATAAGCTTGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATT</genome_strand>
        <mrna_strand>CCAAAGTTTCCACCTGAAGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTAGGGGTTTAAATTTGGTTAAAGAAAGTGATTATAAAGTCTTGATGGATAATAAGCTTGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263054" ref_strand="+" ref_description="SGN-E263054 [cLEG-59-F21]">
      <seq>tttgatggtgggtatgtgcatcatgggttgttgaaggcagcaatttggatgttgaataaagaatccgagactttgaaaaggctttgggttgagaatgggaagagttacaggatgatatttgttggacattctttgggttctggagttgcatcattgttgactataattgcggcgaatcacggggatagattagggggtatcccaaggagttcactccgttgctatgctgttgctcctgctaggtgtatgtcactcaatttggctgttaaatatgctgatgttatccactcagtggttttgcaggatgatttcttaccacgaactcccacccccctggaagatatattcaaatccgtcttctgtttaccatgcttgttatttttggtgtgcttgagagataccttcataccagaaggtaggaaactcagagatccaagaagattatatgcacctggtcgaatgtatcacgttgttgaaagaaaattttgcagatgtgggagattccctccagatgttagaactgccatcccagttgatggaagatttgagcatattgtgctgtcatgcaatgcaacatctgatcacggaattatttggatacaaagagaatcagagaaggcgttagcgagactcaaggaggctacaagtgctgaggcaccgacagctccaccaccggtgcagagaaattgaaggcagcatacccctagaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="53363" stop="59060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53663" g_stop="53965" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53966" i_stop="55495" i_length="1530">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55496" g_stop="55554" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="362" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55555" i_stop="55687" i_length="133">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.277" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55688" g_stop="55816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="491" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55817" i_stop="57763" i_length="1947">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57764" g_stop="57899" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="627" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57900" i_stop="58673" i_length="774">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58674" g_stop="58760" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="714" r_length="87" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E263054" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53663" e_stop="53965"/>
          <exon e_start="55496" e_stop="55554"/>
          <exon e_start="55688" e_stop="55816"/>
          <exon e_start="57764" e_stop="57899"/>
          <exon e_start="58674" e_stop="58760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAGGTGAGTTGGTTTAGTCGTTATTGATTTGCCTATTCTAGTTTGTTACAATCATGCTTTAGCAACATATTCAGAAAAATATTACTGCTTGATTAATATGTTGTACATTAGCTTGTGATTGGAAATGTTGGATATGCTGTTAGTGTGATTTAGACTAAAATATATGTTCGTTCTGTTGATTTATCTAGTAATAATTTTGGGCATTAGGAGGCTAGAGGAAAAGATCGAAATTTGATGCTGATAACTTAAAAGTCCTAAAATGTAGAAGCGGATTGAAGTTTTTTGAATGTCTCTATTGCAATCACCTTGTGATGAGTGGATGGTGAAAATGCGTTGGCTATCATCCTGTCCTTGTATTTATTGCAGACAAATGTGGTCTCTTGTTTATAGTTTGTCTTTGTGTCAAGATGTGTTGGCATGTACATATAGTAGAAGTAGGATGGGTGATCCCCAGAGAAGTCCTCGTGTTGCATCCCTTTAGTAGTAGTATTTTGCATTACGTAGTATCTTATGCTCATTAGCTCTTTTTATTTTGCTATTATGTTGTCGCTGTTTTCCTTTTTATCCTGTTCTGTCTACACTTCTTTTGAGCCGAGGGTCTATCATTTGTACCTTGTTTTTACGGGATTTTATAGGGAGCAACTTGTGTATGATAGCCATCAGATGAATTTCAGGAGACAGTTGCACTAACCTATGGCAGTTTTTAGTTCTTCTATATAACGACCAACTTAATGTAGATTAAAGTTTGCATAATGAGCTTATAACCAATATATTACAGGATCATGACTTGGGACATAGTCCGAAATGCAAAGTCAGACTATTTGACACTTCCAAATGGTCAATTTTTTTTGTCGAATTAGCATAAAGTTCCTCTTGTCCCAAAAACTAGCTCATTTCAGTTCATTCTGTCTAAATCCTATCTTGTTCTGTTCAGTTTGGTACCATTTGAAGTTTTCTCTTACAACTCATATCTTATAGATAATACAGAATAAATAATTGGATCTAAATATTTCAACTTTCGATAACGAGGGGGAATTCGAAGCCATTAGAGTGGAAGAAGGGACATTTGTATGTCTTTCATGTGTTTAGTGTGCTTCAACTTCTGATTCTGGTGGACCCAAACAATTAGTTAAAATCCAAATTAAGAAAATATGAATAAACAAAAGGTATGTCTAGCAAGGGAAATTTTGGTCAATCCACTGACCGGAAATGGAACAGCCTCCGCTCTTTACCTCAGACCAAACATAGCTGATTCAGGCTGTTTACTATGATGTATCTAACCATTATCAATGTCATGCTAATTCATTTCTGTCAGATAATAGTTGATGGGGCAGTCAAACTTTTAGGATATTGCAGTAAAATAATTACTCAAACCATGTTTGTGCTGTTTTTATCCGGGAATTTAAAAATATTGCTGGCTAAAAGCCATGAAGGCAATACAAGGCGTTGATTTGTTCCTTATTGCTAAATGGAACTTATGAAGCAATCATGTTCTCTGAATTAACACGTCTATTCTGGCTTCTTCTTCTTCAGGATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTGGTTAGTTCAATTATCCTACACTCTTTGGGTGCAGAGCAAAGCCCTTGAGTTTCCTAAATTCCTTTCGTGCTTTTTTTGCTATGGATGAATTGTCATAAGTATCTCTTAAACTGGGCGTTGATGCTTTCAACAGTTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAGGTAAATCACATTCAAAATATTGATTTACCATTCTGTACTTCTGTTTTCAGGCAGTTTTTACTTTTTTGATCTGTGAAGAGGATTTGCTTTTTAGACACCCTTTCCTCCTCATTGGCAAGATTCCAATCCTGTCATACGTGGAAATGCAGAGCGCTTGCTCCGAGGATAAAATATTAGAATTTTGCATCAATAGGTTCAGATGTATGACCTCACTTTGGCAACATACCACCTGACGTCTTGGACTAAGAAGCATTTTTGAACTATTCAAGATGTTACTGAAACCTTTTCATATTTGAACTATGTTAGTTCCTGTTGTTAATAGAGCAATGCGGAGTAGAATTGATTTAGCATTGCATCAAAATTTGATGCCCCTCTCACCGAATGGAACTCTAGAAAAGAAAGGTTAATAATGCTTCTGGACTAAATACACCAAGAAGAACTTGTAGGCATGCACAGTCACTAGGGCATGGAACAAAGTAATTAACTGCTAATAATCATCTTTGCTTGATTCAGATTTTATATTCGTAGAAGAGACATGGAAGGTGTTCGCTTATCCTTCCATACAATTAGTCTGTAGTATTACACTTGTAGTTTCTTGTACTTTGAGTTTGGTTGCTATCTGTTGTTTAATGCGTCTTTTGATTGTCATATTATTTTCTTGTGATTACTGTTCAAGATGATTTATCATGTTGTCTATAGAATTTTGCCTTGGCTTCTTTCACTTCTGTTTTTTCTTTTTACCGTGCTGCTTTGGACTGTTTTTTCGTTGAACTGAGGATCTACTTGGAAACCTCTCTACCTCCGAGATAGGGGTAGTCTGCATACGGTGTACCCTCCCCAGGCCCCACTTTGTGGCATTACACTAAGTAGTTATTGTTGTTGTAGGCATGGAGGTGTAGTTGTATACCTTTTACAATGTTAACTACAGAGAAGTTCACACAAGTCAAATCACTTATGCTAGCTAACTGATATACACCATCTACGCATCCAAATTTTTGAACCCAAATTTCTAGCCAGACAGAGTTCTTGTATTGCTATTGCCTACCATGATTTGCCATTTTCTACTGGTGAATTCTGCCTTTAAATTCCCATCTTTCAGAAGCCTTTAGTTTTAGTTCAACTAGAAATCACCTTATGTGATTTTCTTAATTGTGTCATATATAGAGGCTAATGATTGGACACATAGCCGTTCTGTTAACAGACTTAAGTACTTGACCAGACCTGATTGTTTACATTCCAAAAGTTTTAGCTTAAACTTTTTAGTTAGTACGTGTTTGCGGTCTTCTTCTCAAGTGCATTACGAATTGCCCGAGAGTGGAGCCAAAGTCTTATTTTTCTCATGCTGTGATCAGAGATCAATACTTACTGAACTTTACTGCTCGCTGTGTTGTACTCCCCTATCCCAATTTATAGAGCACTCTTTCCTTTTTAGTCGGTCCGAAAAGAAAGACACCTTTCTTGTTACATGTTCAAAAAAATAAAAATAAAAATTTCTATATTTACTAACAATGTCAACTTTAATCTCCGTTTTATGCTTAATGAGATGATTGATAGTCACACACACACACTAACATCTATGACTTATTTTAGACTACAAGTTTCAAAAGTCTTCCTTTTATTCTTAAACTCGGTGCCCAGTCAAACACCTTCATTGAAAGGAGAAACCATTTGATACTATGCATGCTTAGATTCAGAGTTATTGAACAGATTGTTTACTGCTATTATGTATCTCATCAAAATGAAATCTTGGGGGTACCCGGTGTTGACCGCTGCTTGTTCTATTCTAAGTAAAAAGAAAAAGAGATCTTCTTTTGTTGCAACTTCTTTGGAAGCTGAGCTCTTGGGTGAAATTTTGGAAAGCCAGTTTGTAATTGATTTATCAATTTGCTGATGTTGTAACATTGATGCTTTATTACTTTTTCTTAATCATATTTTGTTTCTCTTCAGATGTGGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACAAAGAGAATCAGAGAAGGCGTTAGCGGTAAGTGACTTCTGGATATTTTTCCATTTGAAAAGAGAACGAAATCATCATTAATGATTTCATTTCGATCAAACATGTGAGTTAAATGTCTTACCTTCATTGCAAGTCTGAAGAGTCAAAAGAGACGAGCCTAATGTTAGGCTTTTTTTCATGAATCAGAAAAGAAGCGAGTTGTGTCTTTTTTCCCCTTCAAATATCAGTTTTCACTAGTAAATATGACAACAGACGTGCAGACATTGACATATGAGCCTCTAAGGCGTAACGAACTTCATGGTAATCCCTCGAAAGGAACCAAAAATTTCTAGGAATATTAATTACACTAATACTCACCAAAAATTTCCAGGGTGAGTATAAGCCATGGTGTTCTCCTTGATATAAAGTCATATTTTTTTTTATTTTTTGGGGGTATAATAGCATTTCTCCCACGGCCAACTAAACAATGCCCGCTTATCTCTAAATTCATCAAGTTGTTAAATTGTGTATAGCAGCTATCTAGTTACTGCACGGCTTTATTTGGTAGTAGTTTGAGAATTTCATTCTGTGTTTGTCTTGCCTTATCAAGTTTGAACAATAGAGACACACCCCGCTCCGTGACTGTTCCATATGTAGGTGAAACTAGACCTTCTGTGAGCTAAGATTCCGTGAATTTGTTTCAATTCCTAAGATCCCAAAGGAGCAGAATAGTGTGCCAAACGCTGCCATGTTTCCGCATCCTAGAAAGTCATTTTGATTTACTTGAAAATGTTTGTTGAAGAAATATATGGTTCCCTGCAGAGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAA</genome_strand>
        <mrna_strand>TTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTG.....................................................................................................................................TTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACAAAGAGAATCAGAGAAGGCGTTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAAATTGAAGGCAGCATACCCCTAGAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390150" ref_strand="+" ref_description="SGN-E390150 [TUS-41-E1]">
      <seq>ttgttgaaggcagcaatttggatgttgaataaagaatccgagactttgaaaaggctttgggttgagaatgggaagagttacaggatgatatttgttggacattctttgggttctggagttgcatcattgttgactataattgcggcgaatcacggggatagattagggggtatcccaaggagttcactccgttgctatgctgttgctcctgctaggtgtatgtcactcaatttggctgttaaatatgctgatgttatccactcagtggttttgcaggatgatttcttaccacgaactcccacccccctggaagatatattcaaatccgtcttctgtttaccatgcttgttatttttggtgtgcttgagagataccttcataccagaaggtaggaaactcagagatccaagaggattatatgcacctggtcgaatgtatcacgttgttgaaagaaaattttgcagatgtgggaaattccctccagatgttagaactgccatcccagttgaaggaatatttgatcatattttgctgtcctgccatgcaacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="53390" stop="58152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53690" g_stop="53965" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53966" i_stop="55495" i_length="1530">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55496" g_stop="55554" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="335" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55555" i_stop="55687" i_length="133">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.277" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55688" g_stop="55816" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="464" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55817" i_stop="57763" i_length="1947">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57764" g_stop="57852" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="553" r_length="89" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E390150" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53690" e_stop="53965"/>
          <exon e_start="55496" e_stop="55554"/>
          <exon e_start="55688" e_stop="55816"/>
          <exon e_start="57764" e_stop="57852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAGGTGAGTTGGTTTAGTCGTTATTGATTTGCCTATTCTAGTTTGTTACAATCATGCTTTAGCAACATATTCAGAAAAATATTACTGCTTGATTAATATGTTGTACATTAGCTTGTGATTGGAAATGTTGGATATGCTGTTAGTGTGATTTAGACTAAAATATATGTTCGTTCTGTTGATTTATCTAGTAATAATTTTGGGCATTAGGAGGCTAGAGGAAAAGATCGAAATTTGATGCTGATAACTTAAAAGTCCTAAAATGTAGAAGCGGATTGAAGTTTTTTGAATGTCTCTATTGCAATCACCTTGTGATGAGTGGATGGTGAAAATGCGTTGGCTATCATCCTGTCCTTGTATTTATTGCAGACAAATGTGGTCTCTTGTTTATAGTTTGTCTTTGTGTCAAGATGTGTTGGCATGTACATATAGTAGAAGTAGGATGGGTGATCCCCAGAGAAGTCCTCGTGTTGCATCCCTTTAGTAGTAGTATTTTGCATTACGTAGTATCTTATGCTCATTAGCTCTTTTTATTTTGCTATTATGTTGTCGCTGTTTTCCTTTTTATCCTGTTCTGTCTACACTTCTTTTGAGCCGAGGGTCTATCATTTGTACCTTGTTTTTACGGGATTTTATAGGGAGCAACTTGTGTATGATAGCCATCAGATGAATTTCAGGAGACAGTTGCACTAACCTATGGCAGTTTTTAGTTCTTCTATATAACGACCAACTTAATGTAGATTAAAGTTTGCATAATGAGCTTATAACCAATATATTACAGGATCATGACTTGGGACATAGTCCGAAATGCAAAGTCAGACTATTTGACACTTCCAAATGGTCAATTTTTTTTGTCGAATTAGCATAAAGTTCCTCTTGTCCCAAAAACTAGCTCATTTCAGTTCATTCTGTCTAAATCCTATCTTGTTCTGTTCAGTTTGGTACCATTTGAAGTTTTCTCTTACAACTCATATCTTATAGATAATACAGAATAAATAATTGGATCTAAATATTTCAACTTTCGATAACGAGGGGGAATTCGAAGCCATTAGAGTGGAAGAAGGGACATTTGTATGTCTTTCATGTGTTTAGTGTGCTTCAACTTCTGATTCTGGTGGACCCAAACAATTAGTTAAAATCCAAATTAAGAAAATATGAATAAACAAAAGGTATGTCTAGCAAGGGAAATTTTGGTCAATCCACTGACCGGAAATGGAACAGCCTCCGCTCTTTACCTCAGACCAAACATAGCTGATTCAGGCTGTTTACTATGATGTATCTAACCATTATCAATGTCATGCTAATTCATTTCTGTCAGATAATAGTTGATGGGGCAGTCAAACTTTTAGGATATTGCAGTAAAATAATTACTCAAACCATGTTTGTGCTGTTTTTATCCGGGAATTTAAAAATATTGCTGGCTAAAAGCCATGAAGGCAATACAAGGCGTTGATTTGTTCCTTATTGCTAAATGGAACTTATGAAGCAATCATGTTCTCTGAATTAACACGTCTATTCTGGCTTCTTCTTCTTCAGGATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTGGTTAGTTCAATTATCCTACACTCTTTGGGTGCAGAGCAAAGCCCTTGAGTTTCCTAAATTCCTTTCGTGCTTTTTTTGCTATGGATGAATTGTCATAAGTATCTCTTAAACTGGGCGTTGATGCTTTCAACAGTTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAGGTAAATCACATTCAAAATATTGATTTACCATTCTGTACTTCTGTTTTCAGGCAGTTTTTACTTTTTTGATCTGTGAAGAGGATTTGCTTTTTAGACACCCTTTCCTCCTCATTGGCAAGATTCCAATCCTGTCATACGTGGAAATGCAGAGCGCTTGCTCCGAGGATAAAATATTAGAATTTTGCATCAATAGGTTCAGATGTATGACCTCACTTTGGCAACATACCACCTGACGTCTTGGACTAAGAAGCATTTTTGAACTATTCAAGATGTTACTGAAACCTTTTCATATTTGAACTATGTTAGTTCCTGTTGTTAATAGAGCAATGCGGAGTAGAATTGATTTAGCATTGCATCAAAATTTGATGCCCCTCTCACCGAATGGAACTCTAGAAAAGAAAGGTTAATAATGCTTCTGGACTAAATACACCAAGAAGAACTTGTAGGCATGCACAGTCACTAGGGCATGGAACAAAGTAATTAACTGCTAATAATCATCTTTGCTTGATTCAGATTTTATATTCGTAGAAGAGACATGGAAGGTGTTCGCTTATCCTTCCATACAATTAGTCTGTAGTATTACACTTGTAGTTTCTTGTACTTTGAGTTTGGTTGCTATCTGTTGTTTAATGCGTCTTTTGATTGTCATATTATTTTCTTGTGATTACTGTTCAAGATGATTTATCATGTTGTCTATAGAATTTTGCCTTGGCTTCTTTCACTTCTGTTTTTTCTTTTTACCGTGCTGCTTTGGACTGTTTTTTCGTTGAACTGAGGATCTACTTGGAAACCTCTCTACCTCCGAGATAGGGGTAGTCTGCATACGGTGTACCCTCCCCAGGCCCCACTTTGTGGCATTACACTAAGTAGTTATTGTTGTTGTAGGCATGGAGGTGTAGTTGTATACCTTTTACAATGTTAACTACAGAGAAGTTCACACAAGTCAAATCACTTATGCTAGCTAACTGATATACACCATCTACGCATCCAAATTTTTGAACCCAAATTTCTAGCCAGACAGAGTTCTTGTATTGCTATTGCCTACCATGATTTGCCATTTTCTACTGGTGAATTCTGCCTTTAAATTCCCATCTTTCAGAAGCCTTTAGTTTTAGTTCAACTAGAAATCACCTTATGTGATTTTCTTAATTGTGTCATATATAGAGGCTAATGATTGGACACATAGCCGTTCTGTTAACAGACTTAAGTACTTGACCAGACCTGATTGTTTACATTCCAAAAGTTTTAGCTTAAACTTTTTAGTTAGTACGTGTTTGCGGTCTTCTTCTCAAGTGCATTACGAATTGCCCGAGAGTGGAGCCAAAGTCTTATTTTTCTCATGCTGTGATCAGAGATCAATACTTACTGAACTTTACTGCTCGCTGTGTTGTACTCCCCTATCCCAATTTATAGAGCACTCTTTCCTTTTTAGTCGGTCCGAAAAGAAAGACACCTTTCTTGTTACATGTTCAAAAAAATAAAAATAAAAATTTCTATATTTACTAACAATGTCAACTTTAATCTCCGTTTTATGCTTAATGAGATGATTGATAGTCACACACACACACTAACATCTATGACTTATTTTAGACTACAAGTTTCAAAAGTCTTCCTTTTATTCTTAAACTCGGTGCCCAGTCAAACACCTTCATTGAAAGGAGAAACCATTTGATACTATGCATGCTTAGATTCAGAGTTATTGAACAGATTGTTTACTGCTATTATGTATCTCATCAAAATGAAATCTTGGGGGTACCCGGTGTTGACCGCTGCTTGTTCTATTCTAAGTAAAAAGAAAAAGAGATCTTCTTTTGTTGCAACTTCTTTGGAAGCTGAGCTCTTGGGTGAAATTTTGGAAAGCCAGTTTGTAATTGATTTATCAATTTGCTGATGTTGTAACATTGATGCTTTATTACTTTTTCTTAATCATATTTTGTTTCTCTTCAGATGTGGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTG</genome_strand>
        <mrna_strand>TTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTG.....................................................................................................................................TTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAGGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGAAATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGAAGGAATATTTGATCATATTTTGCTGTCCTGCCATGCAACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244566" ref_strand="+" ref_description="SGN-E244566 [cLED-38-F11]">
      <seq>tgttgaaggcagcaatttggatgttgaataaagaatccgagactttgaaaaggctttgggttgagaatgggaagagttacaggatgatatttgttggacattctttgggttctggagttgcatcattgttgactataattgcggcgaatcacggggatagattagggggtatcccaaggagttcactccgttgctatgctgttgctcctgctaggtgtatgtcactcaatttggctgttaaatatgctgatgttatccactcagtggttttgcaggatgatttcttaccacgaactcccacccccctggaagatatattcaaatccgtcttctgtttaccatgcttgttatttttggtgtgcttgagagataccttcataccagaaggtgggaaactcagagatccaagaagattatatgcacctggtcgaatgtatcacgttgttgaaagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="53391" stop="56109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53691" g_stop="53965" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53966" i_stop="55495" i_length="1530">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55496" g_stop="55554" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="334" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55555" i_stop="55687" i_length="133">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.277" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55688" g_stop="55809" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="456" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E244566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53691" e_stop="53965"/>
          <exon e_start="55496" e_stop="55554"/>
          <exon e_start="55688" e_stop="55809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAGGTGAGTTGGTTTAGTCGTTATTGATTTGCCTATTCTAGTTTGTTACAATCATGCTTTAGCAACATATTCAGAAAAATATTACTGCTTGATTAATATGTTGTACATTAGCTTGTGATTGGAAATGTTGGATATGCTGTTAGTGTGATTTAGACTAAAATATATGTTCGTTCTGTTGATTTATCTAGTAATAATTTTGGGCATTAGGAGGCTAGAGGAAAAGATCGAAATTTGATGCTGATAACTTAAAAGTCCTAAAATGTAGAAGCGGATTGAAGTTTTTTGAATGTCTCTATTGCAATCACCTTGTGATGAGTGGATGGTGAAAATGCGTTGGCTATCATCCTGTCCTTGTATTTATTGCAGACAAATGTGGTCTCTTGTTTATAGTTTGTCTTTGTGTCAAGATGTGTTGGCATGTACATATAGTAGAAGTAGGATGGGTGATCCCCAGAGAAGTCCTCGTGTTGCATCCCTTTAGTAGTAGTATTTTGCATTACGTAGTATCTTATGCTCATTAGCTCTTTTTATTTTGCTATTATGTTGTCGCTGTTTTCCTTTTTATCCTGTTCTGTCTACACTTCTTTTGAGCCGAGGGTCTATCATTTGTACCTTGTTTTTACGGGATTTTATAGGGAGCAACTTGTGTATGATAGCCATCAGATGAATTTCAGGAGACAGTTGCACTAACCTATGGCAGTTTTTAGTTCTTCTATATAACGACCAACTTAATGTAGATTAAAGTTTGCATAATGAGCTTATAACCAATATATTACAGGATCATGACTTGGGACATAGTCCGAAATGCAAAGTCAGACTATTTGACACTTCCAAATGGTCAATTTTTTTTGTCGAATTAGCATAAAGTTCCTCTTGTCCCAAAAACTAGCTCATTTCAGTTCATTCTGTCTAAATCCTATCTTGTTCTGTTCAGTTTGGTACCATTTGAAGTTTTCTCTTACAACTCATATCTTATAGATAATACAGAATAAATAATTGGATCTAAATATTTCAACTTTCGATAACGAGGGGGAATTCGAAGCCATTAGAGTGGAAGAAGGGACATTTGTATGTCTTTCATGTGTTTAGTGTGCTTCAACTTCTGATTCTGGTGGACCCAAACAATTAGTTAAAATCCAAATTAAGAAAATATGAATAAACAAAAGGTATGTCTAGCAAGGGAAATTTTGGTCAATCCACTGACCGGAAATGGAACAGCCTCCGCTCTTTACCTCAGACCAAACATAGCTGATTCAGGCTGTTTACTATGATGTATCTAACCATTATCAATGTCATGCTAATTCATTTCTGTCAGATAATAGTTGATGGGGCAGTCAAACTTTTAGGATATTGCAGTAAAATAATTACTCAAACCATGTTTGTGCTGTTTTTATCCGGGAATTTAAAAATATTGCTGGCTAAAAGCCATGAAGGCAATACAAGGCGTTGATTTGTTCCTTATTGCTAAATGGAACTTATGAAGCAATCATGTTCTCTGAATTAACACGTCTATTCTGGCTTCTTCTTCTTCAGGATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTGGTTAGTTCAATTATCCTACACTCTTTGGGTGCAGAGCAAAGCCCTTGAGTTTCCTAAATTCCTTTCGTGCTTTTTTTGCTATGGATGAATTGTCATAAGTATCTCTTAAACTGGGCGTTGATGCTTTCAACAGTTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAAT</genome_strand>
        <mrna_strand>TGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTG.....................................................................................................................................TTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTGGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242117" ref_strand="+" ref_description="SGN-E242117 [cLED-37-E24]">
      <seq>tgttgaaggcagcaatttggatgttgaataaagaatccgagactttgaaaaggctttgggttgagaatgggaagagttacaggatgatatttgttggacattctttgggttctggagttgcatcattgttgactataattgcggcgaatcacggggatagattatggggtatcccaaggagttcactccgttgctatgctgttgctcctgctaggtgtatgtcactcaatttggctgttaaatatgctgatgttatccactcagaggttttgcaggatgatttcttaccacgaactcccacccccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="53391" stop="55828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53691" g_stop="53965" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53966" i_stop="55495" i_length="1530">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55496" g_stop="55528" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="308" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E242117" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53691" e_stop="53965"/>
          <exon e_start="55496" e_stop="55528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAGGTGAGTTGGTTTAGTCGTTATTGATTTGCCTATTCTAGTTTGTTACAATCATGCTTTAGCAACATATTCAGAAAAATATTACTGCTTGATTAATATGTTGTACATTAGCTTGTGATTGGAAATGTTGGATATGCTGTTAGTGTGATTTAGACTAAAATATATGTTCGTTCTGTTGATTTATCTAGTAATAATTTTGGGCATTAGGAGGCTAGAGGAAAAGATCGAAATTTGATGCTGATAACTTAAAAGTCCTAAAATGTAGAAGCGGATTGAAGTTTTTTGAATGTCTCTATTGCAATCACCTTGTGATGAGTGGATGGTGAAAATGCGTTGGCTATCATCCTGTCCTTGTATTTATTGCAGACAAATGTGGTCTCTTGTTTATAGTTTGTCTTTGTGTCAAGATGTGTTGGCATGTACATATAGTAGAAGTAGGATGGGTGATCCCCAGAGAAGTCCTCGTGTTGCATCCCTTTAGTAGTAGTATTTTGCATTACGTAGTATCTTATGCTCATTAGCTCTTTTTATTTTGCTATTATGTTGTCGCTGTTTTCCTTTTTATCCTGTTCTGTCTACACTTCTTTTGAGCCGAGGGTCTATCATTTGTACCTTGTTTTTACGGGATTTTATAGGGAGCAACTTGTGTATGATAGCCATCAGATGAATTTCAGGAGACAGTTGCACTAACCTATGGCAGTTTTTAGTTCTTCTATATAACGACCAACTTAATGTAGATTAAAGTTTGCATAATGAGCTTATAACCAATATATTACAGGATCATGACTTGGGACATAGTCCGAAATGCAAAGTCAGACTATTTGACACTTCCAAATGGTCAATTTTTTTTGTCGAATTAGCATAAAGTTCCTCTTGTCCCAAAAACTAGCTCATTTCAGTTCATTCTGTCTAAATCCTATCTTGTTCTGTTCAGTTTGGTACCATTTGAAGTTTTCTCTTACAACTCATATCTTATAGATAATACAGAATAAATAATTGGATCTAAATATTTCAACTTTCGATAACGAGGGGGAATTCGAAGCCATTAGAGTGGAAGAAGGGACATTTGTATGTCTTTCATGTGTTTAGTGTGCTTCAACTTCTGATTCTGGTGGACCCAAACAATTAGTTAAAATCCAAATTAAGAAAATATGAATAAACAAAAGGTATGTCTAGCAAGGGAAATTTTGGTCAATCCACTGACCGGAAATGGAACAGCCTCCGCTCTTTACCTCAGACCAAACATAGCTGATTCAGGCTGTTTACTATGATGTATCTAACCATTATCAATGTCATGCTAATTCATTTCTGTCAGATAATAGTTGATGGGGCAGTCAAACTTTTAGGATATTGCAGTAAAATAATTACTCAAACCATGTTTGTGCTGTTTTTATCCGGGAATTTAAAAATATTGCTGGCTAAAAGCCATGAAGGCAATACAAGGCGTTGATTTGTTCCTTATTGCTAAATGGAACTTATGAAGCAATCATGTTCTCTGAATTAACACGTCTATTCTGGCTTCTTCTTCTTCAGGATGATTTCTTACCACGAACTCCCACCCCCCTG</genome_strand>
        <mrna_strand>TGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTATGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGAGGTTTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTTCTTACCACGAACTCCCACCCCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578231" ref_strand="-" ref_description="SGN-E578231 [LE12BA07]">
      <seq>gggagattccctccagatgttagaactgccatcccagttgatggaagatttgagcatattgtgctgtcatgcaatgcaacatctgatcacggaattatttggatacacagagaatcagagaaggcgttagcgagactcaaggaggctacaagtgctgaggcaccgacagctccaccaccggtgcagagaattgaaaggcagcataccctagaaaaagaacacaagaaagcactagaaagagctgtcactttgaatattccacacgccgtgccaacagacacagatgaggaactatcggtacacaaagaggacgactcagggcgaggagtaacagagacggcttttcttatagaagatgcatccacaagtacaagccattccaccgatgcaagaactaactggaacgatgtagttgagaagcttttcgcgcaagatgaaacggggaagttgacattgaacaaagaagcaagttgtagtactgaatgacaaccctctttgaaggtgctctctctctcttcttatttttttttttctttcaaatttttttttgtgatggttgaagaaaagtattattcttgttcaattatttgtacatttttcttatgtaaaacaatatatatgaattagaatgttcaatttctaaagccccaaagaggggaatatagaaacagaaagaaatgaaaagtggttgtaattgcatttttatttgttttgtttgtgaaatgtttttgcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="57468" stop="59576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57768" g_stop="57899" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57900" i_stop="58673" i_length="774">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58674" g_stop="59280" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="739" r_length="607" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E578231" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57768" e_stop="57899"/>
          <exon e_start="58674" e_stop="59280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACAAAGAGAATCAGAGAAGGCGTTAGCGGTAAGTGACTTCTGGATATTTTTCCATTTGAAAAGAGAACGAAATCATCATTAATGATTTCATTTCGATCAAACATGTGAGTTAAATGTCTTACCTTCATTGCAAGTCTGAAGAGTCAAAAGAGACGAGCCTAATGTTAGGCTTTTTTTCATGAATCAGAAAAGAAGCGAGTTGTGTCTTTTTTCCCCTTCAAATATCAGTTTTCACTAGTAAATATGACAACAGACGTGCAGACATTGACATATGAGCCTCTAAGGCGTAACGAACTTCATGGTAATCCCTCGAAAGGAACCAAAAATTTCTAGGAATATTAATTACACTAATACTCACCAAAAATTTCCAGGGTGAGTATAAGCCATGGTGTTCTCCTTGATATAAAGTCATATTTTTTTTTATTTTTTGGGGGTATAATAGCATTTCTCCCACGGCCAACTAAACAATGCCCGCTTATCTCTAAATTCATCAAGTTGTTAAATTGTGTATAGCAGCTATCTAGTTACTGCACGGCTTTATTTGGTAGTAGTTTGAGAATTTCATTCTGTGTTTGTCTTGCCTTATCAAGTTTGAACAATAGAGACACACCCCGCTCCGTGACTGTTCCATATGTAGGTGAAACTAGACCTTCTGTGAGCTAAGATTCCGTGAATTTGTTTCAATTCCTAAGATCCCAAAGGAGCAGAATAGTGTGCCAAACGCTGCCATGTTTCCGCATCCTAGAAAGTCATTTTGATTTACTTGAAAATGTTTGTTGAAGAAATATATGGTTCCCTGCAGAGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGCGAGGAGTAACAGAGACGGCTTTTCTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTCTTTGAAGGTGCTCTCTCTCTCTTCTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTCTTGTTCAATTATTTGTACATTTTTCTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTCTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAGTTT</genome_strand>
        <mrna_strand>GGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACACAGAGAATCAGAGAAGGCGTTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGCGAGGAGTAACAGAGACGGCTTTTCTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTCTTTGAAGGTGCTCTCTCTCTCTTCTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTCTTGTTCAATTATTTGTACATTTTTCTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTCTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390366" ref_strand="+" ref_description="SGN-E390366 [TUS-41-E1](-)">
      <seq>tggatacaaagagaatcagagaaggcgttagcgagattcaaggaggttacaagtggtgaggcaccgacagctccaccaccggtgcagagaattgaaaggcagcataccctagaaaaagaacacaagaaagcactagaaagagctgtcactttgaatattccacacgccgtgccaacagacacagatgaggaactatcggtacacaaagaggacgactcagggggaggagtaacagagacggctttttttatagaagatgcatccacaagtacaagccattccaccgatgcaagaactaactggaacgatgtagttgagaagcttttcgcgcaagatgaaacggggaagttgacattgaacaaagaagcaagttgtagtactgaatgacaaccctttttgaaggtgctctctctttttttttatttttttttttctttcaaatttttttttgtgatggttgaagaaaagtattatttttgttcaattatttgtacattttttttatgtaaaacaatatatatgaattagaatgttcaatttttaaagccccaaagaggggaatatagaaacagaaagaaatgaaaagtggttgtaattgcatttttatttgttttgtttgtgaaatgtttttgcatagtttttgctcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="57567" stop="59589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57867" g_stop="57899" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57900" i_stop="58673" i_length="774">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58674" g_stop="59288" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="648" r_length="615" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="678"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E390366" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57867" e_stop="57899"/>
          <exon e_start="58674" e_stop="59288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACAAAGAGAATCAGAGAAGGCGTTAGCGGTAAGTGACTTCTGGATATTTTTCCATTTGAAAAGAGAACGAAATCATCATTAATGATTTCATTTCGATCAAACATGTGAGTTAAATGTCTTACCTTCATTGCAAGTCTGAAGAGTCAAAAGAGACGAGCCTAATGTTAGGCTTTTTTTCATGAATCAGAAAAGAAGCGAGTTGTGTCTTTTTTCCCCTTCAAATATCAGTTTTCACTAGTAAATATGACAACAGACGTGCAGACATTGACATATGAGCCTCTAAGGCGTAACGAACTTCATGGTAATCCCTCGAAAGGAACCAAAAATTTCTAGGAATATTAATTACACTAATACTCACCAAAAATTTCCAGGGTGAGTATAAGCCATGGTGTTCTCCTTGATATAAAGTCATATTTTTTTTTATTTTTTGGGGGTATAATAGCATTTCTCCCACGGCCAACTAAACAATGCCCGCTTATCTCTAAATTCATCAAGTTGTTAAATTGTGTATAGCAGCTATCTAGTTACTGCACGGCTTTATTTGGTAGTAGTTTGAGAATTTCATTCTGTGTTTGTCTTGCCTTATCAAGTTTGAACAATAGAGACACACCCCGCTCCGTGACTGTTCCATATGTAGGTGAAACTAGACCTTCTGTGAGCTAAGATTCCGTGAATTTGTTTCAATTCCTAAGATCCCAAAGGAGCAGAATAGTGTGCCAAACGCTGCCATGTTTCCGCATCCTAGAAAGTCATTTTGATTTACTTGAAAATGTTTGTTGAAGAAATATATGGTTCCCTGCAGAGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGCGAGGAGTAACAGAGACGGCTTTTCTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTCTTTGAAGGTGCTCTCTCTCTCTTCTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTCTTGTTCAATTATTTGTACATTTTTCTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTCTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAGTTTTTGCTCCT</genome_strand>
        <mrna_strand>TGGATACAAAGAGAATCAGAGAAGGCGTTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAAGGAGGTTACAAGTGGTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGGGAGGAGTAACAGAGACGGCTTTTTTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTTTTTGAAGGTGCTCTCTCTTTTTTTTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTTTTGTTCAATTATTTGTACATTTTTTTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTTTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAGTTTTTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308956" ref_strand="+" ref_description="SGN-E308956 [cLEY-23-O5]">
      <seq>agcagcaggggcgctgataagtcagctgaggatcttgacaaggaactggacagctaccacgccaacgctgacgccatgcaaacttagatatggcgcttccataacttgtgagttaactagaagaaccaatcatgtctactatgtctctgtatcacgtcaccaaaactcatgctttccagttgtagtttcttgccgtttatatgattgtacgataaatcgatcatttgatgaatgctttttaatcccctaatgaacgtatcgtaaatagagtggtttatttgtcttccccatcttcctatgcaactgtagttctgcttaaattatgcataaggtaattagattgttcaattgtactcacatccatttgaggtgataaagttcattgagtgaaaactttatattgcaaaanaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="60981" stop="59972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60681" g_stop="60272" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="433"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E308956" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60681" e_stop="60272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCCATCTTCCTATGCAACTGTAGTTCTGCTTAAATTATGCATAAGGTAATTAGATTGTTCAATTGTACTCACATCCATTTGAGGTGATAAAGTTCATTGAGTGAAAACTTTATATTGCAAAACA</genome_strand>
        <mrna_strand>AGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCCATCTTCCTATGCAACTGTAGTTCTGCTTAAATTATGCATAAGGTAATTAGATTGTTCAATTGTACTCACATCCATTTGAGGTGATAAAGTTCATTGAGTGAAAACTTTATATTGCAAAANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540860" ref_strand="+" ref_description="SGN-E540860 [TUS-61-F16]">
      <seq>ggaggactgtggttatggcgccaggtggtccagctcgtggaagaggagctgctactagtcgtggttctagtcaaaggggccgtggtggtttgaggaatgcacctggacgtggtcgaggtggtggtggcggtcgtggttggggtagaggtcgtggccgcggtggtaggggaagtagcagcaggggcgctgataagtcagctgaggatcttgacaaggaactggacagctaccacgccaacgctgacgccatgcaaacttagatatggcgcttccataacttgtgagttaactagaagaaccaatcatgtctactatgtctctgtatcacgtcaccaaaactcatgctttccagttgtagtttcttgccgtttatatgattgtacgataaatcgatcatttgatgaatgctttttaatcccctaatgaacgtatcgtaaatagagtggtttatttgtcttccccnnnnnaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="61541" stop="60093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61241" g_stop="61223" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61222" i_stop="61032" i_length="191">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61031" g_stop="60981" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="70" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60980" i_stop="60785" i_length="196">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60784" g_stop="60393" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="462" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="491"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E540860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61241" e_stop="61223"/>
          <exon e_start="61031" e_stop="60981"/>
          <exon e_start="60784" e_stop="60393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGACTGTGGTTATGGCGTATGTTAATCTATTAACCATCTCTTCCTTTGGACTGAGATTTTTGTTGTTTCATGTTTGTGTATGTTTGAATGCTAACCGTGTGCGCTTACATACTCGAAGCTCTTTCTGTGTATAAACATCTTATCAAAGGTTTTGTGCAAATGTTTTTTCTTTCTTTGAGAGTTGAATTTGTACTTCGATTTCTGCAGGCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAGGTAAATCTCAGATGTGGTTTTTCTTGTTAGACGAGCTGTGCTCAACAATACATGTACTTTCTATAGGCGTAAAAAAAGAAAAATACATGTATAAATACGGACCAGTGGAGACGTTCAGTCTTCAGTGTGAGCTGTTTTTCATGGTTACATGTGTTAGAGAATGTGTATAACCTAGATTTCATTTTTCTTTTCACAGTCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCC</genome_strand>
        <mrna_strand>GGAGGACTGTGGTTATGGC...............................................................................................................................................................................................GCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAG....................................................................................................................................................................................................TCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215956" ref_strand="+" ref_description="SGN-E215956 [cLEL-13-D7](-)">
      <seq>agctgctactagtcgtggttctagtcaaaggggccgtggtggtttaaggaatgcacctgaacgtggtcaaggtggtggtgacggtcgtggttggggtagaggtcgtgaccacggtggtaggggaagtagcagcaggggcgctgataagtcagctgaggatcttgacaaggaactggacagctaccacgccaacgctgacgccatgcaaacttagatatggcgcttccataacttgtgagttaactagaagaaccaatcatgtctactatgtctctgtatcacgtcaccaaaactcatgctttccagttgtagtttcttgccgtttatatgattgtacgataaatcgatcatttgatgaatgctttttaatcccctaatgaacgtatcgtaaatagagtggtttatttgtcttccaaaaaaaaaaaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="61304" stop="60095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61004" g_stop="60981" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60980" i_stop="60785" i_length="196">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60784" g_stop="60395" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="414" r_length="390" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="439"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E215956" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61004" e_stop="60981"/>
          <exon e_start="60784" e_stop="60395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTACTAGTCGTGGTTCTAGGTAAATCTCAGATGTGGTTTTTCTTGTTAGACGAGCTGTGCTCAACAATACATGTACTTTCTATAGGCGTAAAAAAAGAAAAATACATGTATAAATACGGACCAGTGGAGACGTTCAGTCTTCAGTGTGAGCTGTTTTTCATGGTTACATGTGTTAGAGAATGTGTATAACCTAGATTTCATTTTTCTTTTCACAGTCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCC</genome_strand>
        <mrna_strand>AGCTGCTACTAGTCGTGGTTCTAG....................................................................................................................................................................................................TCAAAGGGGCCGTGGTGGTTTAAGGAATGCACCTGAACGTGGTCAAGGTGGTGGTGACGGTCGTGGTTGGGGTAGAGGTCGTGACCACGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289974" ref_strand="+" ref_description="SGN-E289974 [cLET-9-H12]">
      <seq>gaggactgtggttatggcgccaggtggtccagctcgtggaagaggagctgctactagtcgtggttctagtcaaaggggccgtggtggtttgaggaatgcacctggacgtggtcgaggtggtggtggcggtcgtggttggggtagaggtcgtggccgcggtggtaggggaagtagcagcaggggcgctgataagtcagctgaggatcttgacaaggaactggacagctaccacgccaacgctgacgccatgcaaacttagatatggcgcttccataacttgtgagttaactagaagaaccaatcatgtctactatgtctctgtatcacgtcaccaaaactaatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="61331" stop="60208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61240" g_stop="61223" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61222" i_stop="61032" i_length="191">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61031" g_stop="60981" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="69" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60980" i_stop="60785" i_length="196">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60784" g_stop="60508" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="346" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E289974" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61240" e_stop="61223"/>
          <exon e_start="61031" e_stop="60981"/>
          <exon e_start="60784" e_stop="60508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACTGTGGTTATGGCGTATGTTAATCTATTAACCATCTCTTCCTTTGGACTGAGATTTTTGTTGTTTCATGTTTGTGTATGTTTGAATGCTAACCGTGTGCGCTTACATACTCGAAGCTCTTTCTGTGTATAAACATCTTATCAAAGGTTTTGTGCAAATGTTTTTTCTTTCTTTGAGAGTTGAATTTGTACTTCGATTTCTGCAGGCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAGGTAAATCTCAGATGTGGTTTTTCTTGTTAGACGAGCTGTGCTCAACAATACATGTACTTTCTATAGGCGTAAAAAAAGAAAAATACATGTATAAATACGGACCAGTGGAGACGTTCAGTCTTCAGTGTGAGCTGTTTTTCATGGTTACATGTGTTAGAGAATGTGTATAACCTAGATTTCATTTTTCTTTTCACAGTCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTT</genome_strand>
        <mrna_strand>GAGGACTGTGGTTATGGC...............................................................................................................................................................................................GCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAG....................................................................................................................................................................................................TCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTAATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725635" ref_strand="+" ref_description="SGN-E725635 [LA04BF02]">
      <seq>tttttttttttttttgggctgcaggaattcggcacgagggaagaagtgatgcattccaagctcttaagagatataacaatgtgcagttggatgggaagcctatgaagattgaaatagttggttccaacccagaaattcctttgtcagctcgtgtaaatgtagttggaggaaccaaccggaggaggactgtggttatggcgccaggtggttcagctcgtggaagaggagctgctactagtcgtggttctagtcaaaggggccgtggtggtttgaggaatgcacctcgaccacgtccaggtggtggtggcggtcgtggttggggtagaggtcgtggccgcggtggtaggggaagtagcagcaggggcgctgataagtcagctgaggatcttgacaaggaactggacagctaccacgccaacgctgacgccatgcaaacttagatatggcgcttccataacttgtgagttaactagaagaaccaatcatgtctactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="61682" stop="60239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61381" g_stop="61223" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="199" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61222" i_stop="61032" i_length="191">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61031" g_stop="60981" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="250" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60980" i_stop="60785" i_length="196">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60784" g_stop="60539" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="496" r_length="246" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="15" polyA_stop="1"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E725635" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61381" e_stop="61223"/>
          <exon e_start="61031" e_stop="60981"/>
          <exon e_start="60784" e_stop="60539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGTTCCAACCCAGAAATTCCTTTGTCAGCTCGTGTAAATGTAGTTGGAGGAACCAACCGGAGGAGGACTGTGGTTATGGCGTATGTTAATCTATTAACCATCTCTTCCTTTGGACTGAGATTTTTGTTGTTTCATGTTTGTGTATGTTTGAATGCTAACCGTGTGCGCTTACATACTCGAAGCTCTTTCTGTGTATAAACATCTTATCAAAGGTTTTGTGCAAATGTTTTTTCTTTCTTTGAGAGTTGAATTTGTACTTCGATTTCTGCAGGCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAGGTAAATCTCAGATGTGGTTTTTCTTGTTAGACGAGCTGTGCTCAACAATACATGTACTTTCTATAGGCGTAAAAAAAGAAAAATACATGTATAAATACGGACCAGTGGAGACGTTCAGTCTTCAGTGTGAGCTGTTTTTCATGGTTACATGTGTTAGAGAATGTGTATAACCTAGATTTCATTTTTCTTTTCACAGTCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATG</genome_strand>
        <mrna_strand>AAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGTTCCAACCCAGAAATTCCTTTGTCAGCTCGTGTAAATGTAGTTGGAGGAACCAACCGGAGGAGGACTGTGGTTATGGC...............................................................................................................................................................................................GCCAGGTGGTTCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAG....................................................................................................................................................................................................TCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTCGACCACGTCCAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723997" ref_strand="+" ref_description="SGN-E723997 [FC22CH12]">
      <seq>tccaattcccttttgttctctgaaaccctaccttcaaattttcttctctcgatcaaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataattactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagaggggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttagaggtggatcatttagaggtggaaggacaacaggggctcctcgtagagggccacttggcgtgaatgctcggccatcagcctacaccattgccaagactttccgcaaaaccaagaatttgccatggcagaatggtttgtttgaagatagccttagagctgcaggactgtcatcagtattggagagtggcacaaagttatatgtttctaatttagacgttggagtgactaatgaagatataagggaactcttttcggagatgggagaactagtacgatttgcaatccactatgacaaaaatggacgtccaagtggcgctgctgaggtggtctttgccagaagaagtgatgcattccaagctcttaagagatataacaatgtgcagttggatgggaagcctatgaagattgaaatagttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65934" stop="61000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65634" g_stop="65443" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64375" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="443" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.365" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62969" g_stop="62823" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="590" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62822" i_stop="62738" i_length="85">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62737" g_stop="62669" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="659" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62668" i_stop="61408" i_length="1261">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61407" g_stop="61300" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="767" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E723997" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65634" e_stop="65443"/>
          <exon e_start="64625" e_stop="64375"/>
          <exon e_start="62969" e_stop="62823"/>
          <exon e_start="62737" e_stop="62669"/>
          <exon e_start="61407" e_stop="61300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAGGCAAGCTCAAAATTATTGCGAAATCTTATGATTTCATAGACACATCTGATATGCTTTATGAACACAACTGAAGGTTCTCTGCTTTTGTTTAGTTGACGTACAAGCAACTCTTGATTTTTTGGTTCAAAGGAGAAGTCCACTTTGGTTCAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGATGATTGAACTTTCTCCTTACTAAAGGATTTCTGATGAATTTTGATTTAAGTGGGAGACTCAGATGGCCCTATTCAGGCAAATCACTTCTTTGTAGGATGCTTCTTGGGGAGATTCATTAACTGAAAATTTAAGAGCCTTCACACCATTTAAACATCCCTAACCCCTAAATGTATAGAGATTGGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTGCAAGGAGAAGTCTACTTTGGTACAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGGTGATCTTTGAACTTTCTCCTTGCTAGAGGTTTTCTGATGGATTTTGATTTAAGTGGGAAATTCAGGTGGCCCTATTCAGGCAAATCACTTCATTGTAGCATGTTTCTTGGGGAGATCCATTAACTGATAATTTAAGAGCCTTCACACCATTTAAACATTCCTAAGCCGTAAACGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTCCAAGGAGAAGTCTACTTTGGTTCAGCCATAAGAAGCTGTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACCCTCCTTTGCAATAGATGTCTTTGAAGATTTTAAAACCTGTCTTGAAACACAGGAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGTGTAAGTTATTCTGCTTTTCATTTTGTATTATGATGTTTTCAGGGTCTTTTTACTTGCTAAGTTGCTATATGTTTATTTATACGAATGAATCTGTTTATTTGCTGTTTAAAGATAACACTACAAGAATTTGTGTGTATTATTATTTAATGTGGAAGAAAGAAACATGATTGAATCATAACAAGATGAGGAGGAGAATGAGAAGGAAGAATATCACCAGCAGTTTGCTGATGATGTTCTAAGAGTTAAAGTCGTGCGAAGATTGGCATGGCTGTGAAAGGTATAGAAGAATAGATCCTACTTTAAGATGTCAAAAATTTTGAACCCTACACTACTGGCTCTTGGGAGATTTGGTTAAAAGAATTTGATATAATAAAAGATCTATAATTAATTGATATGTGTCTGTAAATTTTAATGGACCCTTTGTCTCCTGTTATTTGTTTCAAGACCTTCAGTTGTGGATTAATTGAATATACCAATTCTTAGTCGCATGCTGCTAGTTTACTCTTGGTAGGTCTTTCATTGTTATATTACCACTGCAGAAAATAAAATAGGCACTATCTCAATAGAACCACATATTTTCTCATATAGAGTTGCAGCAGTAAGCTATTTGGTAGTAGCATTTGTCTGTAGAGATTTGTCTTGAGTTCATAGTACTAGTTTGGTTTTGTGGAAATTTCCTAGTATGACTTGTAAACATGATATGAAACGATGCAAGAAGACAGTTCAATTTCTTTAGCCTTCAACTCTCGAGTATTGTATGAATTCAAGATTTGAAGACCCATGAAAAATATATTCTCTGATAACTTGGCAGTAATAAATTATAGTTAATAAGTGGGTTTGAAGGTATCGCAAAGGCTTTCAAATTGATTATGGATATAATTGCAAGCGGTTTTAGCAAAGTGGGACCATTGAAAATGGCCTACAAGTCCCTCTCACTGGTTTTCTAGAAAGTGCTGCTCTCTACTGTTTAATATATGTGTTGACATTTATTTTTGAAGGTCTTTTTTCCCTTGATATAATAGTGTCAAATCAATCTTTTATCCTTTTTCGTTATAATATAGTAGTGTTCAGGAAAAAGAAGTAGAGGATAGCACATGTCCGTAGTTGCATACATATGCGGATATGTGTATTTGTTGCTTTGGTCTTTTGCTTACGAGTTTATCAAATATTTTTCTGTATTTGGCTCAATGTTTCTGAATTTTATAATGCTTGTTTTTAGTTTTGTACTTAAATGTGAAGTTGATCTCATCTCAACTTTCAGGGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGT</genome_strand>
        <mrna_strand>TCCAATTCCCTTTTGTTCTCTGAAACCCTACCTTCAAATTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCGCAAAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGG.....................................................................................GAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709287" ref_strand="+" ref_description="SGN-E709287 [FA51BA12]">
      <seq>cgctccaattcccttttgttctctgaaaccctaacaacattttttcttctctcgatcaaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataactactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagaggggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttagaggtggatcatttagaggtggaaggacaacaggggctcctcgtagagggccacttggcgtgaatgctcggccatcagcctacaccattgccaagactttccgcagaaccaagaatttgccatggcagaatggtttgtttgaagatagccttagagctgcaggactgtcatcagtattggagagtggcacaaagttatatgtttctaatttagacgttggagtgactaatgaagatataagggaactcttttcggagatgggagaactagtacgatttgcaatccactatgacaaaaatggacgtccaagtggcgctgctgaggtggtctttgccagaagaagtgatgcattccaagctcttaagagatataacaatgtgcagttggatgggaagcctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65935" stop="61017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65637" g_stop="65443" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64375" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="446" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.365" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62969" g_stop="62823" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="593" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62822" i_stop="62738" i_length="85">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62737" g_stop="62669" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="662" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62668" i_stop="61408" i_length="1261">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61407" g_stop="61317" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="753" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E709287" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65637" e_stop="65443"/>
          <exon e_start="64625" e_stop="64375"/>
          <exon e_start="62969" e_stop="62823"/>
          <exon e_start="62737" e_stop="62669"/>
          <exon e_start="61407" e_stop="61317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAGGCAAGCTCAAAATTATTGCGAAATCTTATGATTTCATAGACACATCTGATATGCTTTATGAACACAACTGAAGGTTCTCTGCTTTTGTTTAGTTGACGTACAAGCAACTCTTGATTTTTTGGTTCAAAGGAGAAGTCCACTTTGGTTCAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGATGATTGAACTTTCTCCTTACTAAAGGATTTCTGATGAATTTTGATTTAAGTGGGAGACTCAGATGGCCCTATTCAGGCAAATCACTTCTTTGTAGGATGCTTCTTGGGGAGATTCATTAACTGAAAATTTAAGAGCCTTCACACCATTTAAACATCCCTAACCCCTAAATGTATAGAGATTGGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTGCAAGGAGAAGTCTACTTTGGTACAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGGTGATCTTTGAACTTTCTCCTTGCTAGAGGTTTTCTGATGGATTTTGATTTAAGTGGGAAATTCAGGTGGCCCTATTCAGGCAAATCACTTCATTGTAGCATGTTTCTTGGGGAGATCCATTAACTGATAATTTAAGAGCCTTCACACCATTTAAACATTCCTAAGCCGTAAACGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTCCAAGGAGAAGTCTACTTTGGTTCAGCCATAAGAAGCTGTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACCCTCCTTTGCAATAGATGTCTTTGAAGATTTTAAAACCTGTCTTGAAACACAGGAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGTGTAAGTTATTCTGCTTTTCATTTTGTATTATGATGTTTTCAGGGTCTTTTTACTTGCTAAGTTGCTATATGTTTATTTATACGAATGAATCTGTTTATTTGCTGTTTAAAGATAACACTACAAGAATTTGTGTGTATTATTATTTAATGTGGAAGAAAGAAACATGATTGAATCATAACAAGATGAGGAGGAGAATGAGAAGGAAGAATATCACCAGCAGTTTGCTGATGATGTTCTAAGAGTTAAAGTCGTGCGAAGATTGGCATGGCTGTGAAAGGTATAGAAGAATAGATCCTACTTTAAGATGTCAAAAATTTTGAACCCTACACTACTGGCTCTTGGGAGATTTGGTTAAAAGAATTTGATATAATAAAAGATCTATAATTAATTGATATGTGTCTGTAAATTTTAATGGACCCTTTGTCTCCTGTTATTTGTTTCAAGACCTTCAGTTGTGGATTAATTGAATATACCAATTCTTAGTCGCATGCTGCTAGTTTACTCTTGGTAGGTCTTTCATTGTTATATTACCACTGCAGAAAATAAAATAGGCACTATCTCAATAGAACCACATATTTTCTCATATAGAGTTGCAGCAGTAAGCTATTTGGTAGTAGCATTTGTCTGTAGAGATTTGTCTTGAGTTCATAGTACTAGTTTGGTTTTGTGGAAATTTCCTAGTATGACTTGTAAACATGATATGAAACGATGCAAGAAGACAGTTCAATTTCTTTAGCCTTCAACTCTCGAGTATTGTATGAATTCAAGATTTGAAGACCCATGAAAAATATATTCTCTGATAACTTGGCAGTAATAAATTATAGTTAATAAGTGGGTTTGAAGGTATCGCAAAGGCTTTCAAATTGATTATGGATATAATTGCAAGCGGTTTTAGCAAAGTGGGACCATTGAAAATGGCCTACAAGTCCCTCTCACTGGTTTTCTAGAAAGTGCTGCTCTCTACTGTTTAATATATGTGTTGACATTTATTTTTGAAGGTCTTTTTTCCCTTGATATAATAGTGTCAAATCAATCTTTTATCCTTTTTCGTTATAATATAGTAGTGTTCAGGAAAAAGAAGTAGAGGATAGCACATGTCCGTAGTTGCATACATATGCGGATATGTGTATTTGTTGCTTTGGTCTTTTGCTTACGAGTTTATCAAATATTTTTCTGTATTTGGCTCAATGTTTCTGAATTTTATAATGCTTGTTTTTAGTTTTGTACTTAAATGTGAAGTTGATCTCATCTCAACTTTCAGGGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGA</genome_strand>
        <mrna_strand>CGCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAACTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGG.....................................................................................GAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730375" ref_strand="+" ref_description="SGN-E730375 [LA23DG06]">
      <seq>cctttttctgtaacaattgttgatgatcattgaactttctccttgctagaggtttgctgatggattttgatttaagtgggagattcagatggccctattcaggcaaatcacttccctgtagcatgcttcttggggagattcgttaactggaaatttaagagccttcacaccatttaaacatcctaccccctaatgtatagagattagagggaactttcttaaccgtctgttatccttattgtttagtagcaatcactctagttttctcattattggtttaaagagggagtttgtggctgtcttcatgaattctacttgcattttgtggaactgctaagggacaagatcttctgttaccatctcatttcaaggcatttttgcaaaggtggcttcatttgaacatcagaactggagctcttacctttttgcttaagtacctgatgtgcagtgggtcaattccttttaactcccatctacacttaattctgcatcgttgacttctcttttgctattagattgcatttttttgagcaattcaacttaactggaaactacgtagtgcgatgaaactttgatgaaatgatctactgtcgaagaatggtgaatttatctaattgtttggtagcatgctgacttttgctttcacacctgttaatctttccggcatgcttgcttcagactttccgcagaaccaagaatttgccatggcagaatggtttgtttgaagatagccttagagctgcaggactgtcatcagtattggagagtggcacaaagttatatgtttctaatttagacgttggagtgactaatgaagatataagggtacaccttgagcttgtcttctcacattatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="63940" stop="62490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63647" g_stop="62790" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="858" r_length="858" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E730375" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63647" e_stop="62790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACC</genome_strand>
        <mrna_strand>CCTTTTTCTGTAACAATTGTTGATGATCATTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255719" ref_strand="+" ref_description="SGN-E255719 [cLEG-36-H11]">
      <seq>ttctccaattcccttttgttctctgaaaccctaacaacattttttcttgtctcgatcaaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataattactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagaggggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttataggtggatcatttagaggtggaaggacaacaagggctcctcgtagagggccacttggcgtgaatgctcagccatcagcctacaccattgccaagactttccgcagaaccaagaatttgccatggcagaatggtttgattgaagatagccttagagctgcatgactgtcatcagtattggagagtggcacaaagttatatgtttctaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65937" stop="62553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65637" g_stop="65443" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64375" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="446" r_length="251" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.365" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62969" g_stop="62853" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="563" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E255719" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65637" e_stop="65443"/>
          <exon e_start="64625" e_stop="64375"/>
          <exon e_start="62969" e_stop="62853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAGGCAAGCTCAAAATTATTGCGAAATCTTATGATTTCATAGACACATCTGATATGCTTTATGAACACAACTGAAGGTTCTCTGCTTTTGTTTAGTTGACGTACAAGCAACTCTTGATTTTTTGGTTCAAAGGAGAAGTCCACTTTGGTTCAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGATGATTGAACTTTCTCCTTACTAAAGGATTTCTGATGAATTTTGATTTAAGTGGGAGACTCAGATGGCCCTATTCAGGCAAATCACTTCTTTGTAGGATGCTTCTTGGGGAGATTCATTAACTGAAAATTTAAGAGCCTTCACACCATTTAAACATCCCTAACCCCTAAATGTATAGAGATTGGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTGCAAGGAGAAGTCTACTTTGGTACAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGGTGATCTTTGAACTTTCTCCTTGCTAGAGGTTTTCTGATGGATTTTGATTTAAGTGGGAAATTCAGGTGGCCCTATTCAGGCAAATCACTTCATTGTAGCATGTTTCTTGGGGAGATCCATTAACTGATAATTTAAGAGCCTTCACACCATTTAAACATTCCTAAGCCGTAAACGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTCCAAGGAGAAGTCTACTTTGGTTCAGCCATAAGAAGCTGTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTA</genome_strand>
        <mrna_strand>TTCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTGTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTATAGGTGGATCATTTAGAGGTGGAAGGACAACAAGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCAGCCATCAGCCTACACCATTGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGATTGAAGATAGCCTTAGAGCTGCATGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256387" ref_strand="+" ref_description="SGN-E256387 [cLEG-38-G13]">
      <seq>tcgatcaaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataattactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagaggggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttagaggtggatcatttacaggtggaaggacaacaggggctcctcgtacagggccacttggcgtgaatgctcggccatcagcctacaccattgccaagactttccgcagaaccaagaatttgccatggcagaatggtttgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65886" stop="62623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65586" g_stop="65443" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64375" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="395" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.365" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62969" g_stop="62923" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="442" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E256387" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65586" e_stop="65443"/>
          <exon e_start="64625" e_stop="64375"/>
          <exon e_start="62969" e_stop="62923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAGGCAAGCTCAAAATTATTGCGAAATCTTATGATTTCATAGACACATCTGATATGCTTTATGAACACAACTGAAGGTTCTCTGCTTTTGTTTAGTTGACGTACAAGCAACTCTTGATTTTTTGGTTCAAAGGAGAAGTCCACTTTGGTTCAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGATGATTGAACTTTCTCCTTACTAAAGGATTTCTGATGAATTTTGATTTAAGTGGGAGACTCAGATGGCCCTATTCAGGCAAATCACTTCTTTGTAGGATGCTTCTTGGGGAGATTCATTAACTGAAAATTTAAGAGCCTTCACACCATTTAAACATCCCTAACCCCTAAATGTATAGAGATTGGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTGCAAGGAGAAGTCTACTTTGGTACAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGGTGATCTTTGAACTTTCTCCTTGCTAGAGGTTTTCTGATGGATTTTGATTTAAGTGGGAAATTCAGGTGGCCCTATTCAGGCAAATCACTTCATTGTAGCATGTTTCTTGGGGAGATCCATTAACTGATAATTTAAGAGCCTTCACACCATTTAAACATTCCTAAGCCGTAAACGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTCCAAGGAGAAGTCTACTTTGGTTCAGCCATAAGAAGCTGTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGA</genome_strand>
        <mrna_strand>TCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTACAGGTGGAAGGACAACAGGGGCTCCTCGTACAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329804" ref_strand="+" ref_description="SGN-E329804 [cTOD-3-O6]">
      <seq>attcccttttgttctctgaaaccctaacaacattttttcttctctcgatcaaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataattactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagaggggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttagaggtggatcatttagaggtggaaggacaacaggggctcctcgtagagggccacttggcgtgaatgctcggccatcagcctacaccattgccaagactttccgcagaaccaagaatttgccatggcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65930" stop="62636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65630" g_stop="65443" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64375" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="439" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.365" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62969" g_stop="62936" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="473" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E329804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65630" e_stop="65443"/>
          <exon e_start="64625" e_stop="64375"/>
          <exon e_start="62969" e_stop="62936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAGGCAAGCTCAAAATTATTGCGAAATCTTATGATTTCATAGACACATCTGATATGCTTTATGAACACAACTGAAGGTTCTCTGCTTTTGTTTAGTTGACGTACAAGCAACTCTTGATTTTTTGGTTCAAAGGAGAAGTCCACTTTGGTTCAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGATGATTGAACTTTCTCCTTACTAAAGGATTTCTGATGAATTTTGATTTAAGTGGGAGACTCAGATGGCCCTATTCAGGCAAATCACTTCTTTGTAGGATGCTTCTTGGGGAGATTCATTAACTGAAAATTTAAGAGCCTTCACACCATTTAAACATCCCTAACCCCTAAATGTATAGAGATTGGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTGCAAGGAGAAGTCTACTTTGGTACAGCCATAATAAGCTGTTCAACTGTAGTGCAATTGTTGGTGATCTTTGAACTTTCTCCTTGCTAGAGGTTTTCTGATGGATTTTGATTTAAGTGGGAAATTCAGGTGGCCCTATTCAGGCAAATCACTTCATTGTAGCATGTTTCTTGGGGAGATCCATTAACTGATAATTTAAGAGCCTTCACACCATTTAAACATTCCTAAGCCGTAAACGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATGGTTCCAAGGAGAAGTCTACTTTGGTTCAGCCATAAGAAGCTGTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGA</genome_strand>
        <mrna_strand>ATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCGCAGAACCAAGAATTTGCCATGGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329615" ref_strand="+" ref_description="SGN-E329615 [cTOD-3-O7]">
      <seq>attcccttttgttctctgaaaccctaacaacattttttcttctctcgatcaaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataattactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagaggggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttagaggtggatcatttagaggtggaaggacaacaggggctcctcgtagagggccacttggcgtgaatgctcggccatcagcctacaccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65930" stop="64080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65630" g_stop="65443" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64380" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="434" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E329615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65630" e_stop="65443"/>
          <exon e_start="64625" e_stop="64380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTG</genome_strand>
        <mrna_strand>ATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323494" ref_strand="+" ref_description="SGN-E323494 [cTOC-7-M23]">
      <seq>caaaaaatcttctcatcaatggagattgtatcttaaatcctgaaaatttcttcataattactcgttctcttgtatttctcaccatatccagcgaaaagttgcagatttgtacgttcgtggcatgtttctgcatatattgattggctttagctgaaattttcctagtctgcttacatcatcatggcttcactggatatgaccctgcatgatatgataaaaagtccgagaaatactgagaggggtggtaggggtcaaggcagggcccgacacggaagaggggcacggggttcattcacaggtggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="65881" stop="64158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65581" g_stop="65443" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817">
            <donor d_prob="0.202" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="64458" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="307" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E323494" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65581" e_stop="65443"/>
          <exon e_start="64625" e_stop="64458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTGGTATTATTTGTTGCTTTTTTTTTGTGAACTTTTTTTGCTGTTGTAGCTGCGGATAGCTCATGTTTTAGCTTTATTCAATGATTTTTATTTTTGCTGTTTTTTTTAATTATTTGATTTGTTTATATGTTTCTATATATATATTGGAAAGCTTTCGTTGTGTTTTTTAATTGTTTTTTTGCTATTGTAGCTGCGGAATAGCTCAGGTTTTAGCTTTATTTAATGATTTTTGTTTTTGCTGGTTTTTGATTTGTTTGATTCGTTCATCTGTTTTTGTATGTATGGGTAAGCTTTTGATGTTATGTATCTTTTTGCTATTGAAGCTGTGGAAAGTTCATGTTTTAGCGGTATTCAATGTTTTTTGTTTTTGCTGGTTTTTGATTTGTTCATCTGTTTTTATCATGTGTAACCTTGATTGTATCATCTGTTTCTAAATATAAAGGTGAACTTTTGTCAATTGTAGTCGTGTTTTGCTATTGTAGCTGCAGAAAGTTCATGTTTTGGCCGTATTCAATGATTTTTGCTTTTGCTGTTTTTTTTCCTGGTAAATATTTCACGCGGACACAACCATATGTATATTTGCCACTTCTTTCTATATGTTTTAGATCCATGTTTATTAGTAATTCCTTTGAGATTTGACATTTATGTTGTCTAATTGTTGAAACATTTTTTTGTTTAAATGTCATTTTAAGATTCTACCCTTAGTTGGAACAGTTTCTAGAACATTTTTGTAGTTGTAGTGGTTTTTTTCTTGCCAATTGTTTTTGTTAAACATGATTTTGATAATCATTGTTAATGTGCTTTATTTCCTTTCTTACAGATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCAT</genome_strand>
        <mrna_strand>CAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGCATGATATGATAAAAAGTCCGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACACGGAAGAGGGGCACGGGGTTCATTCACAGGTGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311719" ref_strand="+" ref_description="SGN-E311719 [cLEZ-9-C13]">
      <seq>tgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtcccattataatcggatgctgctagtttacttccaacaagttatatggagttctatgtttttttcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="67624" stop="66448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67324" g_stop="66753" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E311719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67324" e_stop="66753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</genome_strand>
        <mrna_strand>TGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233886" ref_strand="+" ref_description="SGN-E233886 [cLEL-8-L81](-)">
      <seq>cgcccgaccttttcccatcggagtgatccaaaaggaaaaaaagaatatgagcaagaaatccaaatctagcattgttgaggatgatgaacctaagaagacgccattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtcccattataatcggatgctgctagtttacttccaacaagttatatggagttctatgtttttttcaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="67508" stop="66448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67208" g_stop="66753" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="471"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E233886" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67208" e_stop="66753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACG-CATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</genome_strand>
        <mrna_strand>CGCCCGACCTTTTCCC-ATCGGAGTGATCCAAAAGGAAAAAAAGAATATGAGCAAGAAATCCAAATCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717102" ref_strand="+" ref_description="SGN-E717102 [FB18DG04]">
      <seq>agatctgtgctttcgttgcgtgtttctacatatattggatttttgaactcagacttctccagctgaagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtcccattataatcggatgctgctagtttacttccaacaagttatatggagttctatgtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="72449" stop="66460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72149" g_stop="72113" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72112" i_stop="70157" i_length="1956">
            <donor d_prob="0.771" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70156" g_stop="70096" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="98" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="239" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67368" g_stop="66760" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="848" r_length="609" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E717102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72149" e_stop="72113"/>
          <exon e_start="70156" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTGTGCTTTCGTTGCGTGTTTCTACATATATTGGTAAGATTTCATAGCGTTTTTTAATTGGTTTTTTGCTGAAGAAAGTTGATTTTTAGGGTTATTTAATTACCTATGTTTTTGCTGATTTTCGGATCGTTTTGTTTGATTTGTTCATCTGTTTGTATCATGTGTAGAATAGTTTGTATTGTTGGTTCAATTGATGAATTTTGATCGCAAATTATTGGTATCGAAGAACAGAGAAGAGATAGGAGAGAAGTTTAGTGAGAAAACTAGCAGATTGTATTGTCATTTATCATGGTGCAATACATAAAAACCCGTTTAAAAGATGAAAAAGTACCTAAAAGCTAAAACGGGGCCAAAAGCGGACTTTCTTTCAAAAAACTTGACTAATAGAATTGTGAAATTAGGATAGGCTGAAAAATAAGAGAGAAGCTTAGGATGTTAAAGGGGTGTAAGCTCAAAATAGGCGTTTCTTATGTTGAAGCCAATTATATATATGAGTCTATTTATGCTTCTGCGAGTATGATGATGCTTACCACTAAATGAGTCAGTTTGCTCTGGATAAGTTGAAAGCAGTAACTTATTTCGACTGGAAAAAATTGGTTGGTCATGTTTGTTCTTTTCACGTTTCTCCTTTACTACATTGTGGAACTATATGGTAAGGAATTTTATCAGTTAGGATGAGCGTTCACTCCGAAGAAGTATGGAAAGACTTTGTCCCACTATAATGTTACAGTGCTTATCTATGAATCTACTGAAGGTCTGTATTAACGTCAATAGATAGAACAGCTTGCCTCACCCATGAGTGAATATTTCATAGTGGCTTCATTAGATCGTACATCTTTCTTGGTATATCTAGATAATAGGTAGGATCATACACTGGTAATGCATATGTGAATGAGTGCTTTCATAAACCAAAATGCAAATGAAGATGTACAAAATGGACAAAAAGAAGAAAGACTTACAGTACAGCTGAAATAAATGTGTCAATTAAAGTTGAAAAGGGGTTCGGTGACCAGTTCTGGTAAGAGTGGGAATGAGGGCAAAACCAACAAGTTGGAGTGGGGGAAGTAGGACCTCAATAATCAAGAATGACCCACTTTGTTTATTCTGAGGCACCAGTATCACTACACCAATCAATATTCCCAGGAAATTCACGGTCTAGAAAAACAAACAACAAAGGTGCATGGGGAGTATTTTGCTGGCAAGGAATTGAAAAAAAAATCAACTTTGCTGCTTTGGGTCTCTCTATTTTACCCACAAAACTCAATGGTGAATGGCTAATCAGAAAAATAGAAAATTGTGGGAACCATAAACTAGGAAAAGCACAACCCTTCAATTGTTCTTATTTCCCCAATTCTTTGATACACTTCTGAAATTTTCATGGCATATCTTGTGATAGACTTCTGAATTTGTTTTAGAATACTATTTCATTTTCTTTTCCCTTTTTTTCCCTTATGGTGTATGAAAATAACACATTATGCAATTTTTATGTTAGACAGCTTAATTAGTATTGGAAGTATTATATTTCATGTCAAATTAAAGAAAATTCAAGTTTATATCCTCCTGCTTGTGCGACTTCTATGTTGTTGAAGTTTGTAAAAAAGAGCCTGTTCAATAGGTGAGTGAAAAATAATTCAACAAGAAAGAACAGTTTCTTAATTTGTAGAACAAACTAAAGTAGCTTAGTATAAAGAGCGACAATGTCTTTTTCACGAAAGCCTTGTTTACTAAAGAGGCAGCTAGCTTGAGGAATTATCAAAAAATCCAAAAAGTTAACCTAATTTATCAACCACATATATGCTTGTCCCTGGCATATGTCTGTTATTTGCACTTTTACCACAGATATGCTTTTTGATATATATTCTACTCATAGTAAGCTGTCATTTAACATTTTAGTTAACTAGAGTGGTTTTATGAATACAACCTTCATTTGAATCTTTGCTTTTTCATAGTTTTAACCAATACAATGGATACTTGCTACACCTTCTGTAGGATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTT</genome_strand>
        <mrna_strand>AGATCTGTGCTTTCGTTGCGTGTTTCTACATATATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286098" ref_strand="+" ref_description="SGN-E286098 [cLES-13-O2]">
      <seq>ttttttggaagtaaactaccagcatccgattataatgggactaaacacaatgccaatgatgcaaagcaaccattgttacaaaactcaattattctgaagagaaagataatctacttatgcacaataaaaattcaataatgatctacctaggagcataagacctcatactggtccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="66484" stop="67259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66783" g_stop="66959" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E286098" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66783" e_stop="66959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTGGAAGTAAACTAGCAGCATCCGATTATAATGGGACTAAACACAATGCCAATGATCCAAAGCAACCATTGATACAAAATTCAATTATTCTGAAGAGAAAGATAATCTACTTAGGCACAATAAAAATTCAATAATGATCTACCTAGGAGCATAAGACCTCATACTGCTCCAAG</genome_strand>
        <mrna_strand>TTTTTTGGAAGTAAACTACCAGCATCCGATTATAATGGGACTAAACACAATGCCAATGATGCAAAGCAACCATTGTTACAAAACTCAATTATTCTGAAGAGAAAGATAATCTACTTATGCACAATAAAAATTCAATAATGATCTACCTAGGAGCATAAGACCTCATACTGGTCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260483" ref_strand="+" ref_description="SGN-E260483 [cLEG-54-K11]">
      <seq>agaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtcccattataatcggatgctgctagtttacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70427" stop="66490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70127" g_stop="70096" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="173" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="66790" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="752" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E260483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70127" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTC</genome_strand>
        <mrna_strand>AGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723651" ref_strand="+" ref_description="SGN-E723651 [FC21AH09]">
      <seq>ttttcgggcgctatttgcagatctgtgctttcgttgcgtgtttctacatatattggatttttgaactcagacttctccagctgaagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70499" stop="66516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70156" g_stop="70096" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="116" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="257" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="66816" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="811" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E723651" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70156" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGT-CCCATT</genome_strand>
        <mrna_strand>GATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309915" ref_strand="+" ref_description="SGN-E309915 [cLEZ-10-I22]">
      <seq>gataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="67663" stop="66534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67363" g_stop="66834" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E309915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67363" e_stop="66834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGC</genome_strand>
        <mrna_strand>GATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551090" ref_strand="+" ref_description="SGN-E551090 [TUS-55-D12]">
      <seq>gagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70427" stop="66603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70128" g_stop="70096" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="174" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="66903" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="640" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E551090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70128" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGT</genome_strand>
        <mrna_strand>GAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688884" ref_strand="+" ref_description="SGN-E688884 [t3_tus_55_D12]">
      <seq>gagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70427" stop="66605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70128" g_stop="70096" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="174" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="66905" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="638" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E688884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70128" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATT</genome_strand>
        <mrna_strand>GAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321897" ref_strand="+" ref_description="SGN-E321897 [cTOB-29-N19]">
      <seq>acttctccagctgaagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccaacaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattcgaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70441" stop="66609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70141" g_stop="70096" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="187" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="66907" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="649" r_length="462" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E321897" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70141" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTA</genome_strand>
        <mrna_strand>ACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAACAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTCGAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322037" ref_strand="+" ref_description="SGN-E322037 [cTOB-29-N18]">
      <seq>acttctccagctgaagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70441" stop="66850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70141" g_stop="70096" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="187" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="67150" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="406" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E322037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70141" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="67150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAA</genome_strand>
        <mrna_strand>ACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314476" ref_strand="+" ref_description="SGN-E314476 [cTOB-1-O11]">
      <seq>gtgcatggggagtattttgctggttaggaattgaaaaaaaaatcaactttgctgctttgggtctctctattttacccacaaaactcaatggtgaatggctaatcagaaaaatagaaaattgtgggaaccataaactaggaaaagcacaacccttcaattgttcttatttccccaattctttgatacacttctgaaattttcatggcatatcttgtgatagacttctgaatttgttttagaatactatttcattttcttttccctttttttcccttatggtgtatgaaaataacacattatgcaatttttatgttagacagcttaattagtattggaagtattatatttcatgtcaaattaaagaaaattcaagtttatatcctcctgcttgtgcgacttctatgttgttgaagtttgtaaaaaagagcctgttcaataggtgagtgaaaaataattcaacaagaaagaacagtttcttaatttgtagaacaaactaaagtagcttagtataaagagcgacaatgtctttttcacgaaagccttgtttactaaagaggcagctagcttgaggaattatcaaaaaatccaaaaagttaacctaatttatcaaccacatatatgcttgtccctggcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="71269" stop="70033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70969" g_stop="70333" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E314476" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70969" e_stop="70333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCATGGGGAGTATTTTGCTGGCAAGGAATTGAAAAAAAAATCAACTTTGCTGCTTTGGGTCTCTCTATTTTACCCACAAAACTCAATGGTGAATGGCTAATCAGAAAAATAGAAAATTGTGGGAACCATAAACTAGGAAAAGCACAACCCTTCAATTGTTCTTATTTCCCCAATTCTTTGATACACTTCTGAAATTTTCATGGCATATCTTGTGATAGACTTCTGAATTTGTTTTAGAATACTATTTCATTTTCTTTTCCCTTTTTTTCCCTTATGGTGTATGAAAATAACACATTATGCAATTTTTATGTTAGACAGCTTAATTAGTATTGGAAGTATTATATTTCATGTCAAATTAAAGAAAATTCAAGTTTATATCCTCCTGCTTGTGCGACTTCTATGTTGTTGAAGTTTGTAAAAAAGAGCCTGTTCAATAGGTGAGTGAAAAATAATTCAACAAGAAAGAACAGTTTCTTAATTTGTAGAACAAACTAAAGTAGCTTAGTATAAAGAGCGACAATGTCTTTTTCACGAAAGCCTTGTTTACTAAAGAGGCAGCTAGCTTGAGGAATTATCAAAAAATCCAAAAAGTTAACCTAATTTATCAACCACATATATGCTTGTCCCTGGCATAT</genome_strand>
        <mrna_strand>GTGCATGGGGAGTATTTTGCTGGTTAGGAATTGAAAAAAAAATCAACTTTGCTGCTTTGGGTCTCTCTATTTTACCCACAAAACTCAATGGTGAATGGCTAATCAGAAAAATAGAAAATTGTGGGAACCATAAACTAGGAAAAGCACAACCCTTCAATTGTTCTTATTTCCCCAATTCTTTGATACACTTCTGAAATTTTCATGGCATATCTTGTGATAGACTTCTGAATTTGTTTTAGAATACTATTTCATTTTCTTTTCCCTTTTTTTCCCTTATGGTGTATGAAAATAACACATTATGCAATTTTTATGTTAGACAGCTTAATTAGTATTGGAAGTATTATATTTCATGTCAAATTAAAGAAAATTCAAGTTTATATCCTCCTGCTTGTGCGACTTCTATGTTGTTGAAGTTTGTAAAAAAGAGCCTGTTCAATAGGTGAGTGAAAAATAATTCAACAAGAAAGAACAGTTTCTTAATTTGTAGAACAAACTAAAGTAGCTTAGTATAAAGAGCGACAATGTCTTTTTCACGAAAGCCTTGTTTACTAAAGAGGCAGCTAGCTTGAGGAATTATCAAAAAATCCAAAAAGTTAACCTAATTTATCAACCACATATATGCTTGTCCCTGGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300148" ref_strand="+" ref_description="SGN-E300148 [cLEW-11-D10]">
      <seq>tcctacttcccgggggacgggtatttcataggtttcaaccgtaccagatagctctcgcctgttctgagtatgctttagctaacttcatcgaacaaaaatgcgatccagaaatcatgcaaagcgacagaatcaatcaactgcaagtgaagactctctgaaacactatggtgagaaagagagccacagctgctgcaaagacgaagccagtggcaatgaaactctggcaaacatatttcgaggtgcagtggggaaacttctgaaacgagtcatcaagtcacgtggctctcggggtctgtaaacagatgatagttacctacacaaacaggataccatcttcgagccagagaatggatcaagtgaggcagaaaagcagcttactggtactacaggtgtaaggactacattcgatgctaaatgctgctctacagatgtgttacaaaatgtgccatcagaagtggaacatggaagtacagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="73676" stop="76879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73958" g_stop="74097" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74098" i_stop="75911" i_length="1814">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.685" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75912" g_stop="75986" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="215" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75987" i_stop="76126" i_length="140">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76127" g_stop="76251" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="340" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76252" i_stop="76442" i_length="191">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76443" g_stop="76579" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="477" r_length="137" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E300148" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73958" e_stop="74097"/>
          <exon e_start="75912" e_stop="75986"/>
          <exon e_start="76127" e_stop="76251"/>
          <exon e_start="76443" e_stop="76579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTTCCCGGGTTTTGGGTATTTCATAGGTTTCAACCGTACCAGATAGCTCGCGCCTCTTCTGATTATGCTTTAGCTAAATTCATCGAAAAAAAATGCGAACCAGAAATCAGGCAAAGCGACAGAATCAATCAACTGGTACGTTTCAAAAATCAAAACTGCATAAAAATTCAATTTTTTTTTGAGTTTTGCTTGTCATTTTGTAGTATTAGCACTGTTCTGGTGGTTTCTTGTTCTTCAATTTCGGTTGTCATCAGTGTTCTTGTGATTCAGTTATGACATTATTTCGTTGTTCTTAATGTTCTTCCTTCTTTATGTTGTGTAATGCTCTGCATTTCGTATTATTTCCTTCTTGTTACGGCTCCCATATGTGTAATCCTTTTATTTTAAAGCTTAGGTCTATTTAAAACAAATCTCTTTATGTTGTTGTTTATTGTTGTGTCTTCTTTTAAGTATGCACCCTTTTATCGGATTATTTCACATTTGTTTGCTAGTTTTCTTTGTGATTTCACTTTAGTAATTGATTGACCACAGCAAAACATAACCAAGAATGGATAAAAATTCTATCTTTGATTATTGTTTCTCCTTTTTTGTTTGCTTTTCTGTCTTATTTAACCACCCTTTATCTGTTTATGTCACATTTGTTTGCTAGGTTTCTTTGTGATTCAGTTTAGCATCTTATTAACCAGAGCTAAACATAACAAAGGATGCATAAAATTTTTATGTTTGACTATTGTTTCTCATTTTTCATTGGCTTAATACATAAACATACACTAACACTTGGCCTCAACTGGCTAGTAAGTGTTCTAACTTGGAGAGTGTACACCTAGACACCTCAACTTGGTCTCAACGGGTAGCTGACTACTTCAACTCATCCCCTTTCTTGTGGACACCGGATGTTGACATGGCATATAGATTTTGGAGGTGTCTTTGTAAGTTGGAGTGTTTAACTGACCTAGTGGAGATGAGTTGAGATGTGCATACTCAAAGTTGGAGCATTTACTTGCCAATTGAGGACAAGTTTGAAGGTTTATCTATGTGTTATGCCTTTTTAGTTTATTTATCCTATTCTTTAACTATCGGTTTAAGGGATTATTTGTTCCATGTTTTTCTTTGTGTTTCAGTTTAGCAAATGTTTAACTACATAACATTACAGCAAAACATAACCAAGAATGCATATAAAGTTCCATCTTTGATTAATGTTTCTCATTTTTGGTTAATTTTATCCTATTCTTTGATTTCCCCTTTATAGGATTATTTCATCTTTGTTTGCTAGTTGTCAATGTTATTCAGTTCATCAACTGGTATGTTTTCGTTAATTACACAACATGCCACCAAAAACACAACCAGACTGCATAAAGTTTCAATTTTTATATTTTTGTTACACATTTATTTGCTTTTCTAGTCGTTCTTACAATCCTCTTTTCAGGTTCATTCATCTTTCTTTGGTAGATATCTTAGGCTTTCTGTTTATCAAGTGGTATTTTTTCTTTAACCAACATCACAACACCAAAACATAAGGAAGAATGCATACAATTCAATCTTGGATTCTTGCACTTATTCTTTTAACTGGTCTCCCTCTTCAACTATCCCTCTATTGGATTCATTTTTTTTTTTGGTAGCGCTTTCTTGGTTTGGGTTATAGCTTTGAAAAAGCTTGTGGTTGAAGTGAAAAAATGAGTGGGTTCTCAATAGCCGACCATCTGAGGCATGTTTCTTTATTTTCAATTGATAACATGTGTATTTTGATGATAAGTAATTTCTGTTTGTCTGCATGAGTGGTGTCTTACTAGAAGCGAACATTCACGAGCTTTGCAAATGACTAGTGACCACTGATTAAAAAGGAGAAGATCAATATGCTTATGCATGGACTTGTGTTATGTGCTAGTTTGTTTGTTCCATTACCAGAGCGCACTGAGGTCTGGTTAACTTATATGTTCCATTTTGGACAGCAAGTGAAGACTCTTTGAAACACTATGGTGAGAAAGAGAGCCAAAGCGGCTGCAAAGACGAAGCCAGTGGCAATGGTTTGTTCCATTGCAATTGTTCATTATTAATTAATATTTTAAAAATCTTAATAAGTAATTTAATATGGACTAACAATAATAGTATAGATTTGAGTACTTTAAGATTGAAACTACGTTATGAATAGAATGCTTGATTTCAGAAACTCTGGCAAACATATCTCGAGGTGCAGTGGGGAAACTTCTGAAACGAGTCAACAAGTCACGTGGCTCTCGGGGTCTGAAAACAGATGATAGTTACCTACGCAAACAGGATACCATCGTCGAGGTTTGTTTCTTTCTTGATCTATCGCTTCAGTTAGGCAATGTACCGAGTGAAACATTTCCTGCTGGAAGAAGTCTCTTTTTTTCGTAGTGCTGAATAATCATATGTGGTTTGCACGTGTTTTGACGATGACTTAGGTATGAACTGCATTTTATAATCTATTTCTTAATTTCTATTATGTTATATATGTTTAGCCAGAGAATGGATCAAGTGAGGCAGAAAAGCAGCTTACTGGTACTACAGTTGTAAGGACTACATTAGATGCTAAATGCTGCACTACAGATGTGTTACAAAATGTGCCATCGGAAGTGGAACATGGAAGTACAGATGT</genome_strand>
        <mrna_strand>TCCTACTTCCCGGGGGACGGGTATTTCATAGGTTTCAACCGTACCAGATAGCTCTCGCCTGTTCTGAGTATGCTTTAGCTAACTTCATCGAACAAAAATGCGATCCAGAAATCATGCAAAGCGACAGAATCAATCAACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGAAGACTCTCTGAAACACTATGGTGAGAAAGAGAGCCACAGCTGCTGCAAAGACGAAGCCAGTGGCAATG............................................................................................................................................AAACTCTGGCAAACATATTTCGAGGTGCAGTGGGGAAACTTCTGAAACGAGTCATCAAGTCACGTGGCTCTCGGGGTCTGTAAACAGATGATAGTTACCTACACAAACAGGATACCATCTTCGAG...............................................................................................................................................................................................CCAGAGAATGGATCAAGTGAGGCAGAAAAGCAGCTTACTGGTACTACAGGTGTAAGGACTACATTCGATGCTAAATGCTGCTCTACAGATGTGTTACAAAATGTGCCATCAGAAGTGGAACATGGAAGTACAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740551" ref_strand="+" ref_description="SGN-E740551 [LC21DG03]">
      <seq>catttagagggaagatgaacttgatggtattgattgggaaaatgggccggggggggctttgaactctgtacgccatgttaaggaagataaaaacaatggtgtgactgttgagtttgatgctccgcctgatcctagtaaacagaagacagtacgccgagcaactgcacaagaaaaggaattggctgagcttgtgcataaggttaacttgctttgtttactagcaaggggcaggtttgtagatagcgcttgcaatgatcctcttatccaggcttcgttactttcactgctgcctgcacatctgctgaagttgaccgatgctccaaaacttactgcaaaggcactagctcctcttgtcaattggatccatagtcatttccgtgttagaggtgcaaatgatatggagaagccatttcattcagctttggcatcaactctcgagtcccaggaagggaccccagaagaggttgctgcattatctgtggccctgtttagggccttgaatcttacgaccaggttcgtatcaatcttggatgtggcttctttgaagcctgaaattgagaaatcatatccctctggtaaaggccctagtaaggctggtagtgggatatttagctcttcaacattgatggtggctggaccaaagtgttctcctctctctcctgctaaatctatggcttatggcaagcacaatgtttctgataagacttcaacatctgctggccaagctaccaatgacaagtctagagaaactattacagataagtctaataaaagaatgtcagcatcgacatcagatgctcagggtgattctaatgatgcatgtattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="76293" stop="80606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76592" g_stop="76766" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76767" i_stop="76863" i_length="97">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76864" g_stop="76956" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="268" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76957" i_stop="77355" i_length="399">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77356" g_stop="77448" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="361" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77449" i_stop="77531" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77532" g_stop="77633" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="463" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77634" i_stop="79233" i_length="1600">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79234" g_stop="79283" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="513" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79284" i_stop="79984" i_length="701">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79985" g_stop="80306" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="835" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E740551" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76592" e_stop="76766"/>
          <exon e_start="76864" e_stop="76956"/>
          <exon e_start="77356" e_stop="77448"/>
          <exon e_start="77532" e_stop="77633"/>
          <exon e_start="79234" e_stop="79283"/>
          <exon e_start="79985" e_stop="80306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAGATGGGCCAGTTGATACTTTGAAGTCTGAAAGCAATGTTAAGGAAGATACAATCAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAGGTGGTTTGAATATGATAGATATATGAATACCATGATATAAGATTTTAGTCCCTTGTTGGAAGTACATCAATTTATACTTTTCCTCCTTAAATTACAGGAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAGGTTCTTTCTTATGCCTGTAGTTTGATATTCTAACTAGAATAATCATCTGTCACCTTTCTTTTTGTTATGGACTCATGGTTGTTATATGTGTTGAACTTCAAAATTGTGTAAATTTAAAATCTCTATATAATTCTACAACATATGATCACTGGGAACTTTGTGCCTATGCTTACATACTCTCAGATAATTTCAGTTTATCATATGTTTTTCCGGAAACTCTCATTTATTTTGACATTAATCTATGACCTTTTCCCCCCAAAAAAAACATTAATATTTGACTTAGCATGCCATACCTCTTATGTGTGCATGATATGGAAATACTGGCGAGCTTTTGACTTTTGATCGTTTGCTCCAAGTACTGATACTTATACTATATAAGAAATCACTTACTTTTGCCAGGCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGGGTATGTGTTACATGTTATCATTATAACTACCCTTTGATATAGAAGTTTCATTTTCTTATTTCACCTTTTACCACTGGATGCAGATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAGGTATGTTTTCCTTTTATAAGCGTTTCCTCCTTTGTTTTGCTTGTTCTGAGCATAGCTTTTTCTGTAACATTGCGTGCTCTCTTGGGAATTTCCTGTGTAATGGATTAAGGCTACCCTGACATTTGACATGTTTCCTCTACATCACATGTTTACTTCTCTGCCCCATCATATATTTGCATCTTCTTGCTTTAGGATATGAATAGGGGTGGGTATAATTCACCGAAAATCGAATTACCGAGCAGAACCGAGAAATTTGGTGATTCACTAACTGGTACTATATTCAGGATTAAATTTCAGAATTCTGGTAATCAATTTTGATACCCGGTTCCAGACAAGTCAGTACTACCGAATGCCACAGTATTTTAATCTATTACAGTTTTCCAATTACAGACATCACTTACTCTTATTTCGGATTATCTATTTAGCTCAAGTGGTGGTATGATGCCTTAAATAAAGTAAAGATTCACAGTCAAATGACTCTGATAACATGTCAGTTTTTCTTGTTTGTGATTATAACCAATCAAGTTCTCTCGCTCTAATCTTGTGTACAATGTTCAATAATTTTTACTTTCTATTTAGAAAATAGTCTCTAATTAAGGAGCCAGCAGCACAGTTATCAACAAGTTAAATTTTAATGCTTCAGAGAGTTAATATGCTCGTTGTTTATTCAAGGTCACTGTCCTATTTAAATCAGTCAGTATCCTCATAGCTATTTCTTTCCATTTAAACCTTTCTATACTCTCTGTGCGCCTATTAAATATAGAAAATTTTTGAGGGTAAAACAAGCTGTTGGCAGAAATATAATTAATGGACAGTGGTAGAGCAATCCAGACTTTAAAGCAGGACCTGTTGAGTGTTTAGAAGAGTTAATGTGAGTGAAACAAATTAGGCCAACCAAAAAGTGGGGGGAGTACCGGAGTAGTAAAAAAGAGTTGTGGCCTTGTAAAGGTGAAGTCTATACATAATTGCCAACTTACTGTACCGGGATTTACCATACCGAGGTTTGATTTACTGTACTGGACTGAACTTTGGAAATTTCGGTATTTGGTATCTCCTATCTACTATCAATTACCGATTATCGAAAATTAACTTTGAAAATACTGAACAGAATTCCGAATGCCCTCCCCTAGATATGAATCAGATGGTTGGAGACTAGGTTGCATAGACACAAGCAGTCTTATAGTGACAGGAGATGGTAATGAATAATGATGGTTGCTGGCTTGCTGCTGAAGAAAATGGTTTTACTTCTGCTTTTCTGCTGAAGTCACCAAATTAGCTTGCAATTTCTTGTAATTCAGGCACAGTAATTCATTGCAGATCCGCTTGTGGAAGTTTCTCAGACAACTTTTTTTGTGTTTGTTCAATTAGAAAGTTCATAAGTTTGTTCTTTGCCCTTTTTGTCTTTAAAAAAAAATAAAAATAAAGAAACTATGGTCATTTAAATATGGTGTAATATCATGGTTAATTGCTTAACCTTTGGAACCTACCTATTTAAAAACAGAGTTGGAGACTGTCCAGACATCTTAATCTTGATTGAAGAAATAATGTTCAGTATTTGGCCCATTTATCTTAGAACAATTTTTTTTTTTTGTTATTACAGGTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAGGTAAGCTGCTACTTTCTTATTCTTATTACAGCTAAATAGCCTCTATTGTTCTTCTACTGACTGTTTTATTCTCCGTTACTCTGGCTTCTTAATGACGATCATGCGTAAATTCTCTAAGTCCTGGATTGTATACCATGAGGATTCATTTAAATGTGCAAGTCAGTGGGAGGGAGTTAAGCTGTGTAGAGCAGTCAAACTCTGAAACTATCTCAAGTCGGTTGAATTATTTTTATGACTTGTATTCCCCAGTTGGTAATAAGTGAGTTCTGTTTCCCATTTTCCTGTTCATATTTAGTTAGTTGCTAGAGCTATTGCATAGTGATGTTAACACATCTGTCAACGAATTGACTATTGTTGGAGTAAGGAAGTGCATAAATTTACCCTAGCTAAGTGCTGACAATTCAAGTTACCCTGGTTTTTGACATATTTGTGGAAGTCCCCTTCTGCAGACTTTTATTTTGGTAACAAGCAGCATGGTCTAGGAAGTTAGGTGACTATCTTGCATTAGAACTTCTCTTGTACAGGTTCTTTACTGTATTTCAAACATGAAAACCCCCTGGTGGTAGGTACACCAAAAGGACAATTTAAGCTGCTTATGTTTTCTATTCTCGATATTGCAAGCATTATGAAAGCCCCAAAGATTGCAAGTTTTTAATCTCATGACAAATTACCTTCAAGATATCTGAAGATATTCATTGCAGGTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAAAAAAAAA</genome_strand>
        <mrna_strand>CATTTAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAAATGGGCCGGGGGGGGCTTTGAACTCTGTACGCCATGTTAAGGAAGATAAAAACAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAG.................................................................................................GAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGG...................................................................................ATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740825" ref_strand="+" ref_description="SGN-E740825 [LC23AC04]">
      <seq>ctttagagggaagatgaacttgatggtattgattgggaagatgggccagttgatactttgaagtcagaaagcaatgttaaagaagatacaatcaatggtgtgactgttgagtttgatgctccgcctgatcctagtaaacagaagacagtacgccgagcaactgcacaagaaaaggaattggctgagcttgtgcataaggttaacttgctttgtttactagcaaggggcaggtttgtagatagcgcttgcaatgatcctcttatccaggcttcgttactttcactgctgcctgcacatctgctgaagttgaccgatgctccaaaacttactgcaaaggcactagctcctcttgtcaattggatccatagtcatttccgtgttagaggtgcaaatgatatggagaagccatttcattcagctttggcatcaactctcgagtcccaggaagggaccccagaagaggttgctgcattatctgtggccctgtttagggccttgaatcttacgaccaggttcgtatcaatcttggatgtggcttctttgaagcctgaaattgagaaatcatatccctctggtaaaggccctagtaaggctggtagtgggatatttagctcttcaacattgatggtggctggaccaaagtgttctcctctctctcctgctaaatctatggcttatggcaagcacaatgtttctgataagacttcaacatctgctggccaagctaccaatgacaagtctagagaaactattacagataagtctaataaaagaatgtcagcatcgacatcagatgctcagggtgattctaatgatgcatgtattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="76291" stop="80599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76593" g_stop="76766" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76767" i_stop="76863" i_length="97">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76864" g_stop="76956" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="267" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76957" i_stop="77355" i_length="399">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77356" g_stop="77448" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="360" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77449" i_stop="77531" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77532" g_stop="77633" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="462" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77634" i_stop="79233" i_length="1600">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79234" g_stop="79283" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="512" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79284" i_stop="79984" i_length="701">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79985" g_stop="80299" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="827" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E740825" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76593" e_stop="76766"/>
          <exon e_start="76864" e_stop="76956"/>
          <exon e_start="77356" e_stop="77448"/>
          <exon e_start="77532" e_stop="77633"/>
          <exon e_start="79234" e_stop="79283"/>
          <exon e_start="79985" e_stop="80299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAGATGGGCCAGTTGATACTTTGAAGTCTGAAAGCAATGTTAAGGAAGATACAATCAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAGGTGGTTTGAATATGATAGATATATGAATACCATGATATAAGATTTTAGTCCCTTGTTGGAAGTACATCAATTTATACTTTTCCTCCTTAAATTACAGGAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAGGTTCTTTCTTATGCCTGTAGTTTGATATTCTAACTAGAATAATCATCTGTCACCTTTCTTTTTGTTATGGACTCATGGTTGTTATATGTGTTGAACTTCAAAATTGTGTAAATTTAAAATCTCTATATAATTCTACAACATATGATCACTGGGAACTTTGTGCCTATGCTTACATACTCTCAGATAATTTCAGTTTATCATATGTTTTTCCGGAAACTCTCATTTATTTTGACATTAATCTATGACCTTTTCCCCCCAAAAAAAACATTAATATTTGACTTAGCATGCCATACCTCTTATGTGTGCATGATATGGAAATACTGGCGAGCTTTTGACTTTTGATCGTTTGCTCCAAGTACTGATACTTATACTATATAAGAAATCACTTACTTTTGCCAGGCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGGGTATGTGTTACATGTTATCATTATAACTACCCTTTGATATAGAAGTTTCATTTTCTTATTTCACCTTTTACCACTGGATGCAGATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAGGTATGTTTTCCTTTTATAAGCGTTTCCTCCTTTGTTTTGCTTGTTCTGAGCATAGCTTTTTCTGTAACATTGCGTGCTCTCTTGGGAATTTCCTGTGTAATGGATTAAGGCTACCCTGACATTTGACATGTTTCCTCTACATCACATGTTTACTTCTCTGCCCCATCATATATTTGCATCTTCTTGCTTTAGGATATGAATAGGGGTGGGTATAATTCACCGAAAATCGAATTACCGAGCAGAACCGAGAAATTTGGTGATTCACTAACTGGTACTATATTCAGGATTAAATTTCAGAATTCTGGTAATCAATTTTGATACCCGGTTCCAGACAAGTCAGTACTACCGAATGCCACAGTATTTTAATCTATTACAGTTTTCCAATTACAGACATCACTTACTCTTATTTCGGATTATCTATTTAGCTCAAGTGGTGGTATGATGCCTTAAATAAAGTAAAGATTCACAGTCAAATGACTCTGATAACATGTCAGTTTTTCTTGTTTGTGATTATAACCAATCAAGTTCTCTCGCTCTAATCTTGTGTACAATGTTCAATAATTTTTACTTTCTATTTAGAAAATAGTCTCTAATTAAGGAGCCAGCAGCACAGTTATCAACAAGTTAAATTTTAATGCTTCAGAGAGTTAATATGCTCGTTGTTTATTCAAGGTCACTGTCCTATTTAAATCAGTCAGTATCCTCATAGCTATTTCTTTCCATTTAAACCTTTCTATACTCTCTGTGCGCCTATTAAATATAGAAAATTTTTGAGGGTAAAACAAGCTGTTGGCAGAAATATAATTAATGGACAGTGGTAGAGCAATCCAGACTTTAAAGCAGGACCTGTTGAGTGTTTAGAAGAGTTAATGTGAGTGAAACAAATTAGGCCAACCAAAAAGTGGGGGGAGTACCGGAGTAGTAAAAAAGAGTTGTGGCCTTGTAAAGGTGAAGTCTATACATAATTGCCAACTTACTGTACCGGGATTTACCATACCGAGGTTTGATTTACTGTACTGGACTGAACTTTGGAAATTTCGGTATTTGGTATCTCCTATCTACTATCAATTACCGATTATCGAAAATTAACTTTGAAAATACTGAACAGAATTCCGAATGCCCTCCCCTAGATATGAATCAGATGGTTGGAGACTAGGTTGCATAGACACAAGCAGTCTTATAGTGACAGGAGATGGTAATGAATAATGATGGTTGCTGGCTTGCTGCTGAAGAAAATGGTTTTACTTCTGCTTTTCTGCTGAAGTCACCAAATTAGCTTGCAATTTCTTGTAATTCAGGCACAGTAATTCATTGCAGATCCGCTTGTGGAAGTTTCTCAGACAACTTTTTTTGTGTTTGTTCAATTAGAAAGTTCATAAGTTTGTTCTTTGCCCTTTTTGTCTTTAAAAAAAAATAAAAATAAAGAAACTATGGTCATTTAAATATGGTGTAATATCATGGTTAATTGCTTAACCTTTGGAACCTACCTATTTAAAAACAGAGTTGGAGACTGTCCAGACATCTTAATCTTGATTGAAGAAATAATGTTCAGTATTTGGCCCATTTATCTTAGAACAATTTTTTTTTTTTGTTATTACAGGTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAGGTAAGCTGCTACTTTCTTATTCTTATTACAGCTAAATAGCCTCTATTGTTCTTCTACTGACTGTTTTATTCTCCGTTACTCTGGCTTCTTAATGACGATCATGCGTAAATTCTCTAAGTCCTGGATTGTATACCATGAGGATTCATTTAAATGTGCAAGTCAGTGGGAGGGAGTTAAGCTGTGTAGAGCAGTCAAACTCTGAAACTATCTCAAGTCGGTTGAATTATTTTTATGACTTGTATTCCCCAGTTGGTAATAAGTGAGTTCTGTTTCCCATTTTCCTGTTCATATTTAGTTAGTTGCTAGAGCTATTGCATAGTGATGTTAACACATCTGTCAACGAATTGACTATTGTTGGAGTAAGGAAGTGCATAAATTTACCCTAGCTAAGTGCTGACAATTCAAGTTACCCTGGTTTTTGACATATTTGTGGAAGTCCCCTTCTGCAGACTTTTATTTTGGTAACAAGCAGCATGGTCTAGGAAGTTAGGTGACTATCTTGCATTAGAACTTCTCTTGTACAGGTTCTTTACTGTATTTCAAACATGAAAACCCCCTGGTGGTAGGTACACCAAAAGGACAATTTAAGCTGCTTATGTTTTCTATTCTCGATATTGCAAGCATTATGAAAGCCCCAAAGATTGCAAGTTTTTAATCTCATGACAAATTACCTTCAAGATATCTGAAGATATTCATTGCAGGTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAA</genome_strand>
        <mrna_strand>CTTTAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAGATGGGCCAGTTGATACTTTGAAGTCAGAAAGCAATGTTAAAGAAGATACAATCAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAG.................................................................................................GAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGG...................................................................................ATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711696" ref_strand="+" ref_description="SGN-E711696 [FB02CH04]">
      <seq>cccttattccgaaatggtcgatctctacctgtttatgaggggcctgtggtgtgtaccgagttcaaggatgcaattcttgaggcatatgcagaagaagaggtgagaagagaggccaaagagcggaggaggactgaagcagaagctctttctaggtggtatcagcttctttcatcacttattacccgacagaggctgcacaattgttacgtagacggggcatcctcacaatcagcagtcaatattgcaacatccaacgataaatcctccttactagctggtggcagtgagaacacgaggagcgctcgtcaagaaaaatctgagatagccaaatctaatagtccaccatttgtacttgcagaaaaccatgagcatgttttctttgtagaagatcagactgttgatgaagaaagttcaacaaggacgaaacgatgtcgttgtggcttttcagttcaatatgaggagttgtagagctttaaatctctcaattttagtatgagaaattagagaactttttattctcatgcaaagttgggttgtaagttgaagttgatagaaatactaatgtatgattgtatgtaacatcagatcatgacaacaatctgtctttttgtataatatcggtttgggatgagcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="+" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="83067" stop="87258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83362" g_stop="83442" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83443" i_stop="83637" i_length="195">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83638" g_stop="84193" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="637" r_length="556" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84194" i_stop="87023" i_length="2830">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87024" g_stop="87042" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="656" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="+" ref_id="SGN-E711696" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83362" e_stop="83442"/>
          <exon e_start="83638" e_stop="84193"/>
          <exon e_start="87024" e_stop="87042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATTCCGAAATGGTCGATCTCTACCTGTTTATGAGGGGATTGTGGTGTGTACCGAGTTCAAGGATGCAATTCTTGAGGTAATTAAATTGCATTAACTGTAATATATTTTCATCGCTTGGTTACATATCTTTGAGGTCTCCCCCACCAATCATGTTTTCGTTCTTCATTCCTCAAAACCTTTTTGTTCAAATGCTATCAAATAAGTCCAAAACCGTTACTGCATTTGAAGCACTCTGGTAGAACTACTGTTGAATTTGTTGAGATGTTATCAGGCATATGCAGAAGAAGAGGTGAGAAGAGAGGCCAAAGAGCGGAGGAGGACTGAAGCAGAAGCTCTTTCTAGGTGGTATCAGCTTCTTTCATCACTTATTACCCGACAGAGGCTGCACAATTGTTACGTAGACGGGGCATCCTCACAATCAGCAGTCAATATTGCAACATCCAACGATAAATCCTCCTTACTAGCTGGTGGCAGTGAGAACACGAGGAGCGCTCGTCAAGAAAAATCTGAGATAGCCAAATCTAATAGTCCACCATTTGTACTTGCAGAAAACCATGAGCATGTTTTCTTTGTAGAAGATCAGACTGTTGATGAAGAAAGTTCAACAAGGACGAAACGATGTCGTTGTGGCTTTTCAGTTCAATATGAGGAGTTGTAGAGCTTTAAATCTCTCAATTTTAGTATGAGAAATTAGAGAACTTTTTATTCTCATGCAAAGTTGGGTTGTAAGTTGAAGTTGATAGAAATACTAATGTATGATTGTATGTAACATCAGATCATGACAACAATCTGTCTTTTTGTATAATATCGGTTTGGGATGAGCTTAAATAATGCGATATGGTAACTAGTGAGTTTTTGAGCCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATGTAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCAAGACGTCATCATTGTTTATGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATTGTTTATAAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTCTGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTCTGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATGTAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTATGAACCATGCGTTATGCCTCCCACTATTGTCCTAAAAAGGACAATCTAGTGAGTGAAGATTCATATGACTGACCTCGACTTACTTGAAATCGAGACGTCATCATTGTTTCTGAACCATGTGTATGCCTCCCACTATTGTCCTAAAAAGAACAATCTTTTTGCAGTTTCAGTTACTTATTGGAATAAGCAACTGTTACAACAATGTAGAACATTACAACAGATAAGTTACAACCATGAATTTGTTGTAATAAATCAAGATTTTAAACTCAAGTGGGGACCTTAAGCAACTTTGACAAAGACATTACCAATTCATAGGATACTTTAGAAGATATGATAGATAATGTCATGGACAAAGACTATCTACATTTTTTTTGTACATATGATGTTTTTGGTTCACATAACATGTCACAAATCCACTTTCCCACAGTCTCCATTTATATATCAATTCCTTATCCAAATATTCTCTTTTCTTTCACCTTCACTTCCAGCACACACTCACTTTATTAGTCAACCATCAAACACCACAACTGATTTTTTATCAACATAAAGAACAGGATCACTTGTAGAATTAGAATTGTTGACAAGACAATAATCTATTTGGAGAGTTGACAACAACACTGGGGGCCAATATAGTTAAACTAAGAATAAGAATCAAGTGTCAGAGAAAATAAACCTGATCTAACTCAACTTCAAAAGTTAGCTCGTAAAATGAAGATTGTCCAAACTATATAAAGACAACAATCCATTCCCTTAACCAATGTAGGACATTTCAATGGATGATAATAGGATTAAGAATTGAACAAGTGCATCCTCTTCTAACAAGAACTACAAATAAAACACCAACCAAGAAAAAAAGAAGACTAATACAACATAACAAAGCCAAATGAAGTAATAACATCCCACAAATTTTCAGTGTGAATCTTGAATCAACAAGAATTAAACAAGTACACACACTTCTAACAATCTATATTTCTCAGCTACAAGAATTACACACAAATCACTACAAATACAACATCAACCAAGAAAAACTTGAGACATAACACAGTCATTGAGAGTCATCACCATCAACAAAGTCAACAAATCTTCAGCTTCACTTTACACCATTCTGTGCTGGCTGTGGCTCAACTTCCCTATCTACTGTGAATCGCGAATCAACAAGCATTAAAACAAGTACAGGATCTCCTAACAATCTACATTACACAGCTAGAAGAAACACAACCCCTTACAACTACAACATCAACCAAGAAAACTTAAAAACACAACAGAGTTATAAAAGTCGTCACCATCAACCAAGTCTGCGGATTTTCAGCTTCACTCTAAACCATTTTGTGGTGGCTGCGGCCTAATCTTCCTAGGCCTACCTCTAGGCCTTCCGGTTTTCGAAACAGGAGCTAAGTCACTAGGGACACTTGTTGGTTTTGGTTTCTTGGGAGTAGGTGGTGCATTGGGGTCTTTTTTCGGGCGACCTCTTGGCTTTGGAGCTGCAATATCTGTTCCTTGTGGCAATATAGGTTTGGGTTTAGGTGGTCGGCCGCGGCCACGCTTAGGGGGTGCATCTGGACCAGGTTTAATGTAGTTGTTTTTTAGGAAAATAAGTTCACCAGTTTGTTTCATTCTATCCAAATGGTAAGTTATCAACTTTGAGTGTGCATCATTCATGTTTCCATACTTAGATTCAATGTACTTTGATATTGATGACTTGTTTGAGCCTTCTTTTTGTTGCAATGCATCAAGGGCTTCATAAATCATCTGATAATTAAAAACCAACATACCAAAAGTTGAGTTTTTTTTTTTAATGAAATAAATAATTTTCAAAAAAGAAGACAGACATGCAGATCTGTGTTTAAAAAAAAAAAAGCATTCTTGATGATCATGTGATCATGTGGAAGCCATTAAAGAAGTAAAAAAAAAAAGCAAAAAATTAAGAACTAGACAAAAGTTGTTCCTGTATCTTTAATAAACTGTTCTTTATTTTCTCTTTTTTCCCAAGTTTTCTTGGGATTCCAAATCTCATTTTTGGCACTAACAAATGCAAGAATCTACACTTTCAAAAATCCAAAATTCAAGAAAAATCCAGTTGTATTGCACAAAAGTTACAATTTTGCTTGAAAAAAATGATTACTTGTTTTTCTTCCTTCTTAGTTTTTAGTTATCAAAGATTAAATCTTTCTTCCAAAATCAACATAAAAGGAATCAACTTGAGTTAAAAAAAAAAAAAAATTGGCAATATACTTTGTACTCTCTCAATTTCAATTTATTTGTCTGATTTTATTGATATAAAATTTAAAAAAAAAACAAAAAAAA</genome_strand>
        <mrna_strand>CCCTTATTCCGAAATGGTCGATCTCTACCTGTTTATGAGGGGCCTGTGGTGTGTACCGAGTTCAAGGATGCAATTCTTGAG...................................................................................................................................................................................................GCATATGCAGAAGAAGAGGTGAGAAGAGAGGCCAAAGAGCGGAGGAGGACTGAAGCAGAAGCTCTTTCTAGGTGGTATCAGCTTCTTTCATCACTTATTACCCGACAGAGGCTGCACAATTGTTACGTAGACGGGGCATCCTCACAATCAGCAGTCAATATTGCAACATCCAACGATAAATCCTCCTTACTAGCTGGTGGCAGTGAGAACACGAGGAGCGCTCGTCAAGAAAAATCTGAGATAGCCAAATCTAATAGTCCACCATTTGTACTTGCAGAAAACCATGAGCATGTTTTCTTTGTAGAAGATCAGACTGTTGATGAAGAAAGTTCAACAAGGACGAAACGATGTCGTTGTGGCTTTTCAGTTCAATATGAGGAGTTGTAGAGCTTTAAATCTCTCAATTTTAGTATGAGAAATTAGAGAACTTTTTATTCTCATGCAAAGTTGGGTTGTAAGTTGAAGTTGATAGAAATACTAATGTATGATTGTATGTAACATCAGATCATGACAACAATCTGTCTTTTTGTATAATATCGGTTTGGGATGAGCTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356972" ref_strand="+" ref_description="SGN-E356972 [cTOS-22-N4]">
      <seq>gcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgacgacttttataactctgttgtgtttttaagttttcttggttgatgttgtagttgtaaggggttgtgtttcttctagctgtgtaatgtagattgttaggagatcctgtacttgttttaatgcttgttgattcgcgattcacagtagatagggaagttgagccacagccagcacagaatggtgtaaagtgaagctgaagatttgttgactttgttgatggtgatgactctcaatgactgtgttatgtctcaagtttttccttgggtgatgnntgtattgtagtgatttgtgtgtaattcttgtagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="86501" stop="85413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86201" g_stop="85713" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E356972" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86201" e_stop="85713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTT-CTTGGTTGATG-TTGTATTTGTAGTGATTTGTGTGTAATTCTTGTAGCTG</genome_strand>
        <mrna_strand>GCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTTCCTTGGGTGATGNNTGTA-TTGTAGTGATTTGTGTGTAATTCTTGTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729302" ref_strand="+" ref_description="SGN-E729302 [LA20CE11]">
      <seq>agcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgacgacttttataactctgttgtgtttttaagttttcttggttgatgttgtagttgtaaggggttgtgtttcttctagctgtgtaatgtagattgttaggagatcctgtacttgttttaatgcttgttgattcgcgattcacagtagatagggaagttgagccacagccagcacagaatggtgtaaagtgaagctgaagatttgttgactttgttgatggtgatgactctcaatgactgtgttatgtctcaagtttttcttggttgatgttgtatttgtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="86582" stop="85438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86282" g_stop="85738" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E729302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86282" e_stop="85738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTTCTTGGTTGATGTTGTATTTGTAGT</genome_strand>
        <mrna_strand>AGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTTCTTGGTTGATGTTGTATTTGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729634" ref_strand="+" ref_description="SGN-E729634 [LA21CE11]">
      <seq>agtttggccgcggtcgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccgaagtcaataggtcgcccgaaaaaagaccccaatgcaccacctactcccaatacaaccaaaaccagcaagtgtccctactgacttatctcctgtttcgaaaaccggcaaggcctacaggtaggcctaggaagattaggccgcagccaccacaaaatggattagagtgaagctgaaaatccgcagacttggttgatggtgacgacttttataactctgttgtgtttttaagttttcttggttgatgttgtagttgtaaggggttgtgtttcttctagctgtgtaatgtaaattgttaggagatcctgtagttgttttaatgcttgttgattcgcgattcacagtagatagggaaattgagccacaaccagcacagaatggtgtaaagtgaagctgaagatttgttgactttggtgatggtgatgactctccgtgactgtgtaatgtctcaagtttttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="86582" stop="85458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86282" g_stop="85758" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E729634" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86282" e_stop="85758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGA-AACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGG-AAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTTCTTG</genome_strand>
        <mrna_strand>AGTTTGGCCGCGGTCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCGAAGTCAATAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAATACAACCAAAACCAGCAAGTGTCCCTACTGACTTATCTCCTGTTTCGAAAACCGGCAAGGCCTACAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGATTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAAATTGTTAGGAGATCCTGTAGTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAATTGAGCCACAACCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGGTGATGGTGATGACTCTCCGTGACTGTGTAATGTCTCAAGTTTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352163" ref_strand="+" ref_description="SGN-E352163 [cTOS-13-E2]">
      <seq>gcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgacgacttttataactctgttgtgtttttaagttttcttggttgatgttgtagttgtaaggggttgtgtttcttctagctgtgtaatgtagattgttaggagatcctgtacttgttttaatgcttgttgattcgcgattcacagtagatagggaaagtgagccacagccagcacagaatggtgtaaagtgaagctgaaagattgttgactttgttgatggggatgactctcaatgactgtgttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="86501" stop="85473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86201" g_stop="85773" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E352163" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86201" e_stop="85773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGT</genome_strand>
        <mrna_strand>GCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAAGTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAAGATTGTTGACTTTGTTGATGGGGATGACTCTCAATGACTGTGTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398692" ref_strand="+" ref_description="SGN-E398692 [TUS-44-P22]">
      <seq>aatggctactgaatttgtcaacaagattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgacgacttttataactctgttgtgtttttaagttttcttggttgatgttgtagttgtaaggggttgtgtttcttctagctgtgtaatgtagattgttaggagatcctgtacttgttttaatgcttgttgattcgcgattcacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87794" stop="85575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87494" g_stop="87449" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="85875" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="659" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E398692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87494" e_stop="87449"/>
          <exon e_start="86487" e_stop="85875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGT</genome_strand>
        <mrna_strand>AATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287717" ref_strand="+" ref_description="SGN-E287717 [cLES-9-D4]">
      <seq>cgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgatgacttttataactctgttgtgtttttaagttatcttggttgatgttgtacttgcaaggggttgcgattcttctagctgtgtaatgaagattgttaggagatcctgtacttgttttaatgcttgtcgattcgcgattcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="86574" stop="85577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86274" g_stop="85877" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E287717" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86274" e_stop="85877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACA</genome_strand>
        <mrna_strand>CGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGATGACTTTTATAACTCTGTTGTGTTTTTAAGTTATCTTGGTTGATGTTGTACTTGCAAGGGGTTGCGATTCTTCTAGCTGTGTAATGAAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTCGATTCGCGATTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397273" ref_strand="+" ref_description="SGN-E397273 [TUS-45-O21]">
      <seq>aatggttactgaatttgtcaacaaaattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgacgacttttataactctgttgtgtttttaaattttctttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87794" stop="85678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87494" g_stop="87449" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="85977" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="557" r_length="511" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E397273" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87494" e_stop="87449"/>
          <exon e_start="86487" e_stop="85977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTT</genome_strand>
        <mrna_strand>AATGGTTACTGAATTTGTCAACAAAATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAATTTTCTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391943" ref_strand="+" ref_description="SGN-E391943 [TUS-27-H6]">
      <seq>gtcctcactctctctctctctctccatctctttgtggggacatttctctctttctctctctgcaagtttcaatggctactgaatttgtcaacaagattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccgcagccaccacaaaatggtttagagtgaagctgaaaatccgcagacttggttgatggtgacgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87864" stop="85712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87564" g_stop="87449" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="86012" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="592" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E391943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87564" e_stop="87449"/>
          <exon e_start="86487" e_stop="86012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTT</genome_strand>
        <mrna_strand>GTCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297645" ref_strand="+" ref_description="SGN-E297645 [cLET-28-I20]">
      <seq>atggctactgaatttgtcaacaagattcatcctgaatacccggagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcggggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagggactttagctcctgtttcgaaaaccggaaggcctagaggtaggcctaggaagattaggccggagccaccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87793" stop="85764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87493" g_stop="87449" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="86064" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="470" r_length="425" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E297645" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87493" e_stop="87449"/>
          <exon e_start="86487" e_stop="86064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGAC-TTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAA</genome_strand>
        <mrna_strand>ATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGGGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGGGACTTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGGAGCCACCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398661" ref_strand="+" ref_description="SGN-E398661 [TUS-44-P21]">
      <seq>gaatgatgcacactcaaagttgataacttaccatttggatagaatgaaaccaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttacctcctgtttcgaaaaccggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="86695" stop="85809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86395" g_stop="86109" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E398661" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86395" e_stop="86109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCC-AATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAA</genome_strand>
        <mrna_strand>GAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACCAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTACCTCCTGTTTCGAAAACCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307971" ref_strand="+" ref_description="SGN-E307971 [cLEZ-7-L18]">
      <seq>tctctctctctctccatctctttgaggggacatttctctctttctctctctgcaagtttcaatggctactgaatttgtcaacaagattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttaactcctgtttcgaaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87854" stop="85812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87554" g_stop="87449" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="86112" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="482" r_length="376" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E307971" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87554" e_stop="87449"/>
          <exon e_start="86487" e_stop="86112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCG</genome_strand>
        <mrna_strand>TCTCTCTCTCTCTCCATCTCTTTGAGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAACTCCTGTTTCGAAAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270246" ref_strand="+" ref_description="SGN-E270246 [cLEM-1-L12]">
      <seq>tcctcactctgtctctttctctccatctctttgtggggacatttctctgggtctctctctgcaagtctcaatggctactgaatttgtcaacaagattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttagctcctgtttcgaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87863" stop="85813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87563" g_stop="87449" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="86113" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="490" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E270246" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87563" e_stop="87449"/>
          <exon e_start="86487" e_stop="86113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACC</genome_strand>
        <mrna_strand>TCCTCACTCTGTCTCTTTCTCTCCATCTCTTTGTGGGGACATTTCTCTGGGTCTCTCTCTGCAAGTCTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322665" ref_strand="+" ref_description="SGN-E322665 [cTOB-26-M14]">
      <seq>tcactctctctctctctctccatctctttgtggggacatttctctctttctctctctgcaagtttcaatggctactgaatttgtcaacaagattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaccaacaagtgtccctagtgacttagctcctgtttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87860" stop="85819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87560" g_stop="87449" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="86119" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="480" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E322665" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87560" e_stop="87449"/>
          <exon e_start="86487" e_stop="86119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCG</genome_strand>
        <mrna_strand>TCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACC-AAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397437" ref_strand="+" ref_description="SGN-E397437 [TUS-45-P21]">
      <seq>aatggctactgaatttgtcaacaagattcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcaaacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagttgataacttaccatttggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaacctggtccagatgcaccccctaagcgtggccgcggccgaccacctaaacccaaacctatattgccacaaggaacagatattgcagctccaaagccaagaggtcgcccgaaaaaagaccccaatgcaccacctactcccaagaaaccaaaaccaacaagtgtccctagtgacttatctcctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87794" stop="85820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87494" g_stop="87449" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="86120" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="414" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E397437" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87494" e_stop="87449"/>
          <exon e_start="86487" e_stop="86120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTC</genome_strand>
        <mrna_strand>AATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTATCTCCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336805" ref_strand="+" ref_description="SGN-E336805 [cTOE-5-O10]">
      <seq>ttcatcctgaataccctcagatgatttatgaagcccttgatgcattgcaacaaaaagaaggctcacacaagtcatcaatatcaaagtacattgaatctaagtatggaaacatgaatgatgcacactcaaagctgataactcaccattgggatagaatgaaacaaactggtgaacttattttcctaaaaaacaactacattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="87768" stop="86005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87468" g_stop="87449" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86487" g_stop="86305" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="203" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E336805" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87468" e_stop="87449"/>
          <exon e_start="86487" e_stop="86305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCCTGAATACCCTCAGGTAAAAAAAAATATACCAATTTTTTTTATTTTCACTTTGACCCCTTTAATTTTCATTGATTTTTTTCTGCTAAAAATCATGTTCTATGTTCATTCTTTTCTCAAAAATTTGACTCTTTTTCACATTATACCAGATGGGGTGTTGTTTTTTTTCTTGGTTTTAGTAGAAAGATTTGAACTTTTGAAGAAATTGGAGAAAAAAACATTTTTTTTTATGTTTTCAGCATGAATTCTGATCCTTCTTTCTTTGTTTAGTTTTACATGAAGTATGCATATTTCAGAAACTTAAGTACTAGTTTAAAAAGAACTATATCTTTTTTGGTTTTGACAACAATTTAAATTTAATTTTTCTCGTGACATGTATGAGATATTATGCTGCTTCAGTTCAAGACTACTAGATTCAAAAGTTTTTTTTGTTTTTTTTTTAAATTTTATATCAATAAAATCAGACAAATAAATTGAAATTGAGAGAGTACAAAGTATATTGCCAATTTTTTTTTTTTTTTAACTCAAGTTGATTCCTTTTATGTTGATTTTGGAAGAAAGATTTAATCTTTGATAACTAAAAACTAAGAAGGAAGAAAAACAAGTAATCATTTTTTTCAAGCAAAATTGTAACTTTTGTGCAATACAACTGGATTTTTCTTGAATTTTGGATTTTTGAAAGTGTAGATTCTTGCATTTGTTAGTGCCAAAAATGAGATTTGGAATCCCAAGAAAACTTGGGAAAAAAGAGAAAATAAAGAACAGTTTATTAAAGATACAGGAACAACTTTTGTCTAGTTCTTAATTTTTTGCTTTTTTTTTTTACTTCTTTAATGGCTTCCACATGATCACATGATCATCAAGAATGCTTTTTTTTTTTTAAACACAGATCTGCATGTCTGTCTTCTTTTTTGAAAATTATTTATTTCATTAAAAAAAAAAACTCAACTTTTGGTATGTTGGTTTTTAATTATCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAA</genome_strand>
        <mrna_strand>TTCATCCTGAATACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCACACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGCTGATAACTCACCATTGGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553382" ref_strand="+" ref_description="SGN-E553382 [cTSB-5-K15]">
      <seq>gtgagcaagatgtgcaaattgaaaagaagttccatcgatacggagaaaacaaggcatattactctagagaagaatgggaaaactctggagtttcttcctggggaagtttcagctgatcgcctcactgctatccaggaagcatattgggatatagcatctgcactttccgaagctgatggaattgactatactgatccagaagagctcgagttgttggtagcaacgcttatagatcttgatgcaatggatggtaaaagtagtgtatccttgctggccgagtgttcaagttctcctgatgtgaacacaaggaaagcattagcaaatgcacttgcagctgcaccgtccatgtggactttaggaaacgctggcatgggagcgttacagagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaatagttcataagctctacttacattagaaaaaaaaatgccaaactgatttcatcctttcatgctatgtaacttgtttgtatctttggatcattgatatttttatcaatgtataaaaagtctaaagcaacactttattcttcttatatacaaagcagatttctgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="90256" stop="87800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89956" g_stop="89937" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89823" g_stop="89709" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="135" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89626" g_stop="89558" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="204" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89444" g_stop="89341" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="308" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88695" g_stop="88620" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="384" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88512" g_stop="88098" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="799" r_length="415" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E553382" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89956" e_stop="89937"/>
          <exon e_start="89823" e_stop="89709"/>
          <exon e_start="89626" e_stop="89558"/>
          <exon e_start="89444" e_stop="89341"/>
          <exon e_start="88695" e_stop="88620"/>
          <exon e_start="88512" e_stop="88098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCAAGATGTGCAAATTGTAAGTTCATTTTGCATCCTAGCAGTAATAACTAATAAAGGGAATAAATAACACAATTGATCTGACTTTAAATCTTCATCTCTGCTCCGTACTTGTATCCGTCTTCTGTTCAGGAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAGGTATCGAGCCTTGTCTACTTTCAAAGTTCTAATGAAGTAAATGAATACTTCCGTAAGTATAATTATATGTTAATACCTGCAGGAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAGGTCCCAACTTAAAAAAACTTAAATTGATAATAATGACTACGTCTGATTACCGTTGATGTATTAATTCTCTCTTCCACATCTCATTTCTTTTATAAATTTCCTGATTCGAGCAGCTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAGGTTAGCTTTTTCACCCTCTTTTGACATTTCTATGAAATGAATTAGACCCCGTTGTACTCTATTACGCGCTATCATTTCTAATCTGTGCAATTAAACCTCACATTTTTCGTACTCGAGGCTCCCAAAATAGTGTTTCTGCCCCTTAAAATCAACTGCACTTCGTTTTGGATGATACTGAGGCATTAATTTGTTTGTCTGGTTTTGACTTGACACGCGTTTAAGAAAACAAAGAGAACTTTTGAATCTTGTGTCTTAAACTAAAGATACGTAGTAGAATGTACCAAAATGTCTTTTAATCTTGTGTTCTTAAGCATGCCACGTGAAACTTTTAACCCAAAGAGTTGCCAATAAAAAGGAAATAGACATTCTTTTTTAAACGGACTGAAAAGGAAAGTAAGACAAACAAATTGAAACGGATGTAGTTTAACTGTTATTTCCAGCTTAAATTCAACCTCAATTTTTATTAGTTAAGAAATTATTGAACTTAGGAGGCTCCTAAAGATTGAATCTGTATCATCTTGAGACGAAGATGAAGGCGTTTTACTATCCTCATTTGTTTTATTTGTCTTTTACTTGTTTTGATTGATACAGTATTAGTCATTTTAGATCTGTATGACTCGAACACCTGTAAATTTCATCGTGCAGGAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAGGTAATTTGTATAGGAAACTGATGTCTTATCATACAATTTCCATCAACTACACTTTCTCTTATTGAAGCTATTCAACACTGACGGAAGGCTTTGTTATGTGTCCATAGAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAAATATATT</genome_strand>
        <mrna_strand>GTGAGCAAGATGTGCAAATT.................................................................................................................GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG..................................................................................GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG.................................................................................................................CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG...........................................................................................................AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372286" ref_strand="+" ref_description="SGN-E372286 [TUS-30-P9](-)">
      <seq>agtttcttcctggggaagtttcagctgatcgcctcactgctatccaggaagcatattgggatatagcatctgcactttccgaagctgatggaattgactatactgatccagaagagctcgagttgttggtagcaacgcttatagatcttgatgcaatggatggtaaaagtagtgtatccttgctggccgagtgttcaagttctcctgatgtaaacacaaggaaagcattagcaaatgcacttgcagctgcaccgtccatgtggactttaggaaacgctggcatgggagcgttacagagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaatagttcataagctctacttactttagaaaaaaaaatgccaaactgatttcatcctttcatgctatgtaacttgtttgtatctttggatcattgatatttttatcaatgtataaaaagtctaaagcaacactttattcttcttatatacaaagcagatttctgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="90055" stop="87800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89755" g_stop="89709" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89626" g_stop="89558" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="116" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89444" g_stop="89341" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="220" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88695" g_stop="88620" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="296" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88512" g_stop="88098" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="711" r_length="415" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E372286" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89755" e_stop="89709"/>
          <exon e_start="89626" e_stop="89558"/>
          <exon e_start="89444" e_stop="89341"/>
          <exon e_start="88695" e_stop="88620"/>
          <exon e_start="88512" e_stop="88098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAGGTATCGAGCCTTGTCTACTTTCAAAGTTCTAATGAAGTAAATGAATACTTCCGTAAGTATAATTATATGTTAATACCTGCAGGAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAGGTCCCAACTTAAAAAAACTTAAATTGATAATAATGACTACGTCTGATTACCGTTGATGTATTAATTCTCTCTTCCACATCTCATTTCTTTTATAAATTTCCTGATTCGAGCAGCTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAGGTTAGCTTTTTCACCCTCTTTTGACATTTCTATGAAATGAATTAGACCCCGTTGTACTCTATTACGCGCTATCATTTCTAATCTGTGCAATTAAACCTCACATTTTTCGTACTCGAGGCTCCCAAAATAGTGTTTCTGCCCCTTAAAATCAACTGCACTTCGTTTTGGATGATACTGAGGCATTAATTTGTTTGTCTGGTTTTGACTTGACACGCGTTTAAGAAAACAAAGAGAACTTTTGAATCTTGTGTCTTAAACTAAAGATACGTAGTAGAATGTACCAAAATGTCTTTTAATCTTGTGTTCTTAAGCATGCCACGTGAAACTTTTAACCCAAAGAGTTGCCAATAAAAAGGAAATAGACATTCTTTTTTAAACGGACTGAAAAGGAAAGTAAGACAAACAAATTGAAACGGATGTAGTTTAACTGTTATTTCCAGCTTAAATTCAACCTCAATTTTTATTAGTTAAGAAATTATTGAACTTAGGAGGCTCCTAAAGATTGAATCTGTATCATCTTGAGACGAAGATGAAGGCGTTTTACTATCCTCATTTGTTTTATTTGTCTTTTACTTGTTTTGATTGATACAGTATTAGTCATTTTAGATCTGTATGACTCGAACACCTGTAAATTTCATCGTGCAGGAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAGGTAATTTGTATAGGAAACTGATGTCTTATCATACAATTTCCATCAACTACACTTTCTCTTATTGAAGCTATTCAACACTGACGGAAGGCTTTGTTATGTGTCCATAGAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAAATATATT</genome_strand>
        <mrna_strand>AGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG..................................................................................GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG.................................................................................................................CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTAAACACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG...........................................................................................................AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACTTTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553111" ref_strand="+" ref_description="SGN-E553111 [cTSB-1-F14]">
      <seq>gtgagcaagatgtgcaaattgaaaagaagttccatcgatacggagaaaacaaggcatattactctagagaagaatgggaaaactctggagtttcttcctggggaagtttcagctgatcgcctcactgctatccaggaagcatattgggatatagcatctgcactttccgaagctgatggaattgactatactgatccagaagagctcgagttgttggtagcaacgcttatagatcttgatgcaatggatggtaaaagtagtgtatccttgctggccgagtgttcaagttctcctgatgtgaacacaaggaaagcattagcaaatgcacttgcagctgcaccgtccatgtggactttaggaaacgctggcatgggagcgttacagagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaatagttcataagctctacttacattagaaaaaaaaatgccaaactgatttcatcctttcatgctatgtaacttgtttgtatctttggatcattgatatttttatcaatgtataaaaagtctaaagcaacactttattcttcttatatacaaagcaaatttctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="90256" stop="87800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89956" g_stop="89937" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89823" g_stop="89709" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="135" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89626" g_stop="89558" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="204" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89444" g_stop="89341" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="308" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88695" g_stop="88620" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="384" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88512" g_stop="88105" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="792" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="793" polyA_stop="807"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E553111" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89956" e_stop="89937"/>
          <exon e_start="89823" e_stop="89709"/>
          <exon e_start="89626" e_stop="89558"/>
          <exon e_start="89444" e_stop="89341"/>
          <exon e_start="88695" e_stop="88620"/>
          <exon e_start="88512" e_stop="88105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCAAGATGTGCAAATTGTAAGTTCATTTTGCATCCTAGCAGTAATAACTAATAAAGGGAATAAATAACACAATTGATCTGACTTTAAATCTTCATCTCTGCTCCGTACTTGTATCCGTCTTCTGTTCAGGAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAGGTATCGAGCCTTGTCTACTTTCAAAGTTCTAATGAAGTAAATGAATACTTCCGTAAGTATAATTATATGTTAATACCTGCAGGAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAGGTCCCAACTTAAAAAAACTTAAATTGATAATAATGACTACGTCTGATTACCGTTGATGTATTAATTCTCTCTTCCACATCTCATTTCTTTTATAAATTTCCTGATTCGAGCAGCTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAGGTTAGCTTTTTCACCCTCTTTTGACATTTCTATGAAATGAATTAGACCCCGTTGTACTCTATTACGCGCTATCATTTCTAATCTGTGCAATTAAACCTCACATTTTTCGTACTCGAGGCTCCCAAAATAGTGTTTCTGCCCCTTAAAATCAACTGCACTTCGTTTTGGATGATACTGAGGCATTAATTTGTTTGTCTGGTTTTGACTTGACACGCGTTTAAGAAAACAAAGAGAACTTTTGAATCTTGTGTCTTAAACTAAAGATACGTAGTAGAATGTACCAAAATGTCTTTTAATCTTGTGTTCTTAAGCATGCCACGTGAAACTTTTAACCCAAAGAGTTGCCAATAAAAAGGAAATAGACATTCTTTTTTAAACGGACTGAAAAGGAAAGTAAGACAAACAAATTGAAACGGATGTAGTTTAACTGTTATTTCCAGCTTAAATTCAACCTCAATTTTTATTAGTTAAGAAATTATTGAACTTAGGAGGCTCCTAAAGATTGAATCTGTATCATCTTGAGACGAAGATGAAGGCGTTTTACTATCCTCATTTGTTTTATTTGTCTTTTACTTGTTTTGATTGATACAGTATTAGTCATTTTAGATCTGTATGACTCGAACACCTGTAAATTTCATCGTGCAGGAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAGGTAATTTGTATAGGAAACTGATGTCTTATCATACAATTTCCATCAACTACACTTTCTCTTATTGAAGCTATTCAACACTGACGGAAGGCTTTGTTATGTGTCCATAGAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAA</genome_strand>
        <mrna_strand>GTGAGCAAGATGTGCAAATT.................................................................................................................GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG..................................................................................GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG.................................................................................................................CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG...........................................................................................................AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAAATTTCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222399" ref_strand="+" ref_description="SGN-E222399 [cLEL-16-M13](-)">
      <seq>gagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaatagttcataagctctacttacattagaaaaaaaaatgccaaactgatttcatcctttcatgctatgtaacttgtttgtatctttggatcattgatatttttatcaatgtataaaaagtctaaagcaacactttattcttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="88813" stop="87815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88513" g_stop="88129" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="404"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E222399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88513" e_stop="88129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTT</genome_strand>
        <mrna_strand>GAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222645" ref_strand="+" ref_description="SGN-E222645 [cLEL-16-M13](-)">
      <seq>cattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaatagttcataagctctacttacattagaaaaaaaaatgccaaactgatttcatcctttcatgctatgtaacttgtttgtatcttttggatcattgatatttttatcaatgtataaaaagtctaaagcaacactttattcttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="88786" stop="87815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88486" g_stop="88129" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="378"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E222645" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88486" e_stop="88129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCT-TTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTT</genome_strand>
        <mrna_strand>CATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745663" ref_strand="+" ref_description="SGN-E745663 [GI|47105207]">
      <seq>gctagatgaaattatgtagttgctttgctttatttagcttatttttccatgtgggtgtccatcaattcttccaagatttcatctttactaaccccaccccacccccttctctctgtgctgggtagcaaaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctgggaattttgcttttggcttgtacgatcttgtagataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagccaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccagaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcaagcaaccacagttgggaaagttattccttcaagtcaggcaattgcagaagcttgtaaatttgcttacaacgatgccaaatttgtgaatgaaagggcgaagaatgatattgtgctgctttctcgggaaataatgagaatggatgcccgtgcgcgccaagatgttgcatttcttggttcagagtttcttaagcttgatgctcgggcacgggaagatactgagaaagttgatcacaatgtaaagaaaagagccgaaagaatccagcatgttgccactattcttaaaaacatagctcaaacgagactgaagaaagctgctgatcgacactggagcgatggtgccttggaggctgatttaagacgtgccgattttgtggcaaaacagcgtgcaatggaggattctctgatggctctggagtttgtcaagaacattcatgataggatggtgagcaagatgtgcaaattgaaaagaagttccatcgatacggagaaaacaaggcatattactctagagaagaatgggaaaactctggagtttcttcctggggaagtttcagctgatcgcctcactgctatccaggaagcatattgggatatagcatctgcactttccgaagctgatggaattgactatactgatccagaagagctcgagttgttggtagcaacgcttatagatcttgatgcaatggatggtaaaagtagtgtatccttgctggccgagtgttcaagttctcctgatgtgaacacaaggaaagcattagcaaatgcacttgcagctgcaccgtccatgtggactttaggaaacgctggcatgggagcgttacagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaatagttcataagctctacttacattagaaaaaaaaatgccaaactgatttcatcctttcatgctatgtaacttgtttgtatctttggatcattgatatttttatcaatgtataaaaagtctaaagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="94520" stop="87842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94220" g_stop="94091" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94090" i_stop="92923" i_length="1168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92922" g_stop="92557" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="496" r_length="366" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92359" g_stop="92219" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="637" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91508" g_stop="91435" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="711" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91192" g_stop="91116" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="788" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91115" i_stop="91042" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.597" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91041" g_stop="90970" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="860" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90206" g_stop="90138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="929" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89983" g_stop="89937" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="976" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89823" g_stop="89709" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="1091" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="89626" g_stop="89558" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1092" r_stop="1160" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="89444" g_stop="89341" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1264" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="88695" g_stop="88620" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1265" r_stop="1338" r_length="74" r_score="0.974"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="88512" g_stop="88144" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1339" r_stop="1707" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1708" polyA_stop="1720"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E745663" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1709</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94220" e_stop="94091"/>
          <exon e_start="92922" e_stop="92557"/>
          <exon e_start="92359" e_stop="92219"/>
          <exon e_start="91508" e_stop="91435"/>
          <exon e_start="91192" e_stop="91116"/>
          <exon e_start="91041" e_stop="90970"/>
          <exon e_start="90206" e_stop="90138"/>
          <exon e_start="89983" e_stop="89937"/>
          <exon e_start="89823" e_stop="89709"/>
          <exon e_start="89626" e_stop="89558"/>
          <exon e_start="89444" e_stop="89341"/>
          <exon e_start="88695" e_stop="88620"/>
          <exon e_start="88512" e_stop="88144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAGGTAAGACTTTTCCTTAATGTGCTATTGACTTACTTCATTCATCTGTCTTTCTTGTTTTAAGGTGAAATTGTTTAGTTTATTTGCTTTGTTTTGCTTATTTTTCCATGTGGGTGTCCATAAATGCTTCAAGATTCCATCTTTACTCTGTTAATAAAAGTTGTACCTCTTGGTTGCTGAAAATGAGGATTTTTCTGCTTGTTTAGCTTTAGTTTGACTAATTTCCATTTGGGTGTCTACGAAATTCTTCCAAGATTTCATCTTTATTGTACCCTCACTCTATTCATAAGTTGTACCTTTTGGTTGCTGAAACTGAGGATTTTTCCGTTTTGCTTAGCTTTATTTTGATTGATTGCCATGTGGGTGTCCATCAAATTTATTCAAGATTCTATCTTTATTGTGCCCTCACTCTGTTCATAAGTTGTACCTCTTGGTTGCTGAAACTGAAGATTTTTCTGCTTGTTTAGCTTTATTTTGATTGGTTTCCTTATCGGCAACTAAGTTCACTTACCCTTCGATTGAGTCTTTGGTTAAGAAAGGGAGATTTGAGGGGACATCACTAATTGTGGTCTAATCGTTACTACTGAACTTTTGAGGGTCTTGTGAAGGCTGGGTGCTTTTGAAGTTACTAGTTATTATGCATTCATAGGTGCTTTTGGTGATCCTGATTGCGATTAATGATTGAGAAGTATATGATTAATCTAGAATCCAAATTTATTGTATAACAATCCGTGTATTCTGCTTAAGTATATGTATGAACTGTTGGCAACGAGAACCATGAAATACAAAGCAGTTAAAAAAAAAACTTTTAATTTGAATCACAAAAAGGCAGTTGCTAAATGCCTAAATCTGAGCACGAACTCGAGGGAAAGCTATAGAGTACAGATGACAATACCAAAGGACGGCTAAGCGAGGCAAAGCACTCAACATGCTTTGCGCTTTGTTCAGGGCTTAAGTGCTCTTCAAGCACGCCTTCGGCAACATGAGTTTTGCAATAATACTTAATACTTTGGAACTTGATTATCTTTTTTAATTTGTGGTACTCTACCAATAAGGTCATTGTAGAGTAACCTTTGTCTTTATTCATGTTAGTAACCATTTTGATACTAGACAATTGTTTATAGTTTAAACTAAAGAATCTTATTTTGTTAGAATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCGGTACAATATATGCTAAACATTTTATGCATTATTTATTCAAGTCTTGTATCAGATTAAAATAATTACTGAGGCTAAAAAAATTCCATTATGGGTAAAATGAGAAAGTTCAAAAATCTAAATTATTTCAAAATGTAGCTGTCATTCTTTGGAACAGAAATAGTGTCACGTAAAATGGAATAGAGGGATTACTTTATACACCCCAGAAAAACGTTAGAGAGGTCAAAAAACTTAATTATAGTCCTCACCAGCCTTTTTCCCATTGAAAAAAGAAAAAACATTTTGTCATTTGTTGTATATTTAGCTTTGAATTGGGGTCAAGATATGAGGATATAATTTGTGAGCCTCCACTTAGGTAGAAGGAAGAGGACTGGCTCGTTATTAGAAATGAGATTTTGATACAGTTTACTATACTGTAGAATCAAATCTGCATGTTAAATGTTCTCTCTATGTCTGTACCTAGCAAATTCTAGAGACTATATAATTCGTTTAACAATCGAACACTGAGAGATAATTGGTGATTACAACACATTGAGATAATGTTTGTTTGATTTTTTGCTACCTCAAACTGTTATTCTCATCAGCTCCATCATCATATATTCCAGTATTTGTCAAATACCTCTGTACATCATCTTCGAAACCTACTTTATCAAATGAAATATGATACATTAGCTTCATCTCAAATATCTTCCTAATTTACTTTTACCCAACAGGGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATGGTAAAATTCTTTACCCGATTTTCAAGCTTTTACACTATGATAAAAGAACCATATTCAACTGCCTATTTGCAATTTTCATGCTGGGAATCAAAGTTCAATACTTTGATGTATATTGCTTGGATAGTGGTATTGGTGAAGGAGATAGTTGACAATAGCATTTGGATAATAACTTTTGTCATTTGATGTTGGTGATACACTCCTGATATTCTGATTGATCCGTTTTCTTTTCTTTCTTCAATTAGCTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACTGTAAGATAATTATCTACCATAAGATATTCCATCACCATCTTTTCATTGGGATGCTTATCAATTGTGCTTAGCAGATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAGGTGAATTTTTTCATTTGTGCCGTATAAATTCATGCAGTGCATTTTTTTCACTTGTTCCCTAAGGTAGCTGGAGGCAAAGTAGAGAGAATCATTTTCTTGTTTGCCATGTTGTAATTTAACTTGGATAAGATGAAGCATGCATTTTAGTGGCTCCACCAAGTAGACGGCCCATTAGAGAGGTAATTGCATAATCTCAGTCTCCAGATACATAGGGGCTTCTAATTGGAGATACAAAATGCACCAAAAGGTTATAAACTTGCGAGTACAGACAAATTGTAAGTTTTTAGGCCTTATCTATTAATAGTATTTAATTCCAAAATGAACATATTGAACCTGAGGTACATGTGATCAAAGATATAATGCGTCGAGCAGCACATGAAACCAAAGATCTAATTTATGAGTCAGGGACCTAAACTGAGTGTGGAAGTGATGTTCGATACATTCAGGCTGAAACTAGCAGAACATGTTTTCACCTCAAAATGCTGTAACATTTCCTAGTACAAGGCACATTGTGTTCAACAAGGTTATTAATGGATTAGACATGTATTGTGTTAGCATTTTCATTGATAATTCGGAAGTTCAAATCTTTATTGATCTGCTTGGCTTCTGCTACTGATTCGGAACCTCGAGAGCAGATAGCAGCTTGTTGACGACATCACTGTCTTTGCTATAAATTTATGTTGCTTTGCACAGTAGGTTCATTAAAATTATTTGGTGGCTAATATAGATAATCTAAAAGCAGCTGTTTTTCCTCAATAATCAGGCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAGGTATGGTTATTGCACAAAATGGAATTGATCTTCCATATTATGTGTTGTATGAAGATATGTTTATTTACTTCCTTCGTTTTAATAATGACTGCACTCACTACTCTATATTTATTTTTTCTTCGTGATTTCTTGTGTTTGTGTTGTGGTTTTGCAGTTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATTGTAAGTTCATTTTGCATCCTAGCAGTAATAACTAATAAAGGGAATAAATAACACAATTGATCTGACTTTAAATCTTCATCTCTGCTCCGTACTTGTATCCGTCTTCTGTTCAGGAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAGGTATCGAGCCTTGTCTACTTTCAAAGTTCTAATGAAGTAAATGAATACTTCCGTAAGTATAATTATATGTTAATACCTGCAGGAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAGGTCCCAACTTAAAAAAACTTAAATTGATAATAATGACTACGTCTGATTACCGTTGATGTATTAATTCTCTCTTCCACATCTCATTTCTTTTATAAATTTCCTGATTCGAGCAGCTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAGGTTAGCTTTTTCACCCTCTTTTGACATTTCTATGAAATGAATTAGACCCCGTTGTACTCTATTACGCGCTATCATTTCTAATCTGTGCAATTAAACCTCACATTTTTCGTACTCGAGGCTCCCAAAATAGTGTTTCTGCCCCTTAAAATCAACTGCACTTCGTTTTGGATGATACTGAGGCATTAATTTGTTTGTCTGGTTTTGACTTGACACGCGTTTAAGAAAACAAAGAGAACTTTTGAATCTTGTGTCTTAAACTAAAGATACGTAGTAGAATGTACCAAAATGTCTTTTAATCTTGTGTTCTTAAGCATGCCACGTGAAACTTTTAACCCAAAGAGTTGCCAATAAAAAGGAAATAGACATTCTTTTTTAAACGGACTGAAAAGGAAAGTAAGACAAACAAATTGAAACGGATGTAGTTTAACTGTTATTTCCAGCTTAAATTCAACCTCAATTTTTATTAGTTAAGAAATTATTGAACTTAGGAGGCTCCTAAAGATTGAATCTGTATCATCTTGAGACGAAGATGAAGGCGTTTTACTATCCTCATTTGTTTTATTTGTCTTTTACTTGTTTTGATTGATACAGTATTAGTCATTTTAGATCTGTATGACTCGAACACCTGTAAATTTCATCGTGCAGGAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAGGTAATTTGTATAGGAAACTGATGTCTTATCATACAATTTCCATCAACTACACTTTCTCTTATTGAAGCTATTCAACACTGACGGAAGGCTTTGTTATGTGTCCATAGAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAA</genome_strand>
        <mrna_strand>GCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGCCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG..................................................................................................................................................................................................................................................CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACT..........................................................................ATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG..........................................................................................................................................................TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT.................................................................................................................GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG..................................................................................GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG.................................................................................................................CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTAC--...........................................................................................................AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698989" ref_strand="+" ref_description="SGN-E698989 [FA08AH05]">
      <seq>cccatgaaagctgctgatcgacactggagcgatggtgccttggaggctgatttaagacgtgccgattttgtggcaaaacagcgtgcaatggaggattctctgatggctctggagtttgtcaagaacattcatgataggatggtgagcaagatgtgcaaattgaaaagaagttccatcgatacggagaaaacaaggcatattactctagagaagaatgggaaaactctggagtttcttcctggggaagtttcagctgatcgcctcactgctatccaggaagcatattgggatatagcatctgcactttccgaagctgatggaattgactatactgatccagaagagctcgagttgttggtagcaacgcttatagatcttgatgcaatggatggtaaaagtagtgtatccttgctggccgagtgttcaagttctcctgatgtgaacacaaggaaagcattagcaaatgcacttgcagctgcaccgtccatgtggactttaggaaacgctggcatgggagcgttacagagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaatcgatattcgtcctgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="91311" stop="87971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91014" g_stop="90970" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763">
            <donor d_prob="0.995" d_score="0.93"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90206" g_stop="90138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="114" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89983" g_stop="89937" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="161" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89823" g_stop="89709" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="276" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89626" g_stop="89558" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="345" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89444" g_stop="89341" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="449" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88695" g_stop="88620" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="525" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88512" g_stop="88270" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="768" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E698989" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91014" e_stop="90970"/>
          <exon e_start="90206" e_stop="90138"/>
          <exon e_start="89983" e_stop="89937"/>
          <exon e_start="89823" e_stop="89709"/>
          <exon e_start="89626" e_stop="89558"/>
          <exon e_start="89444" e_stop="89341"/>
          <exon e_start="88695" e_stop="88620"/>
          <exon e_start="88512" e_stop="88270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAGGTGAATTTTTTCATTTGTGCCGTATAAATTCATGCAGTGCATTTTTTTCACTTGTTCCCTAAGGTAGCTGGAGGCAAAGTAGAGAGAATCATTTTCTTGTTTGCCATGTTGTAATTTAACTTGGATAAGATGAAGCATGCATTTTAGTGGCTCCACCAAGTAGACGGCCCATTAGAGAGGTAATTGCATAATCTCAGTCTCCAGATACATAGGGGCTTCTAATTGGAGATACAAAATGCACCAAAAGGTTATAAACTTGCGAGTACAGACAAATTGTAAGTTTTTAGGCCTTATCTATTAATAGTATTTAATTCCAAAATGAACATATTGAACCTGAGGTACATGTGATCAAAGATATAATGCGTCGAGCAGCACATGAAACCAAAGATCTAATTTATGAGTCAGGGACCTAAACTGAGTGTGGAAGTGATGTTCGATACATTCAGGCTGAAACTAGCAGAACATGTTTTCACCTCAAAATGCTGTAACATTTCCTAGTACAAGGCACATTGTGTTCAACAAGGTTATTAATGGATTAGACATGTATTGTGTTAGCATTTTCATTGATAATTCGGAAGTTCAAATCTTTATTGATCTGCTTGGCTTCTGCTACTGATTCGGAACCTCGAGAGCAGATAGCAGCTTGTTGACGACATCACTGTCTTTGCTATAAATTTATGTTGCTTTGCACAGTAGGTTCATTAAAATTATTTGGTGGCTAATATAGATAATCTAAAAGCAGCTGTTTTTCCTCAATAATCAGGCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAGGTATGGTTATTGCACAAAATGGAATTGATCTTCCATATTATGTGTTGTATGAAGATATGTTTATTTACTTCCTTCGTTTTAATAATGACTGCACTCACTACTCTATATTTATTTTTTCTTCGTGATTTCTTGTGTTTGTGTTGTGGTTTTGCAGTTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATTGTAAGTTCATTTTGCATCCTAGCAGTAATAACTAATAAAGGGAATAAATAACACAATTGATCTGACTTTAAATCTTCATCTCTGCTCCGTACTTGTATCCGTCTTCTGTTCAGGAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAGGTATCGAGCCTTGTCTACTTTCAAAGTTCTAATGAAGTAAATGAATACTTCCGTAAGTATAATTATATGTTAATACCTGCAGGAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAGGTCCCAACTTAAAAAAACTTAAATTGATAATAATGACTACGTCTGATTACCGTTGATGTATTAATTCTCTCTTCCACATCTCATTTCTTTTATAAATTTCCTGATTCGAGCAGCTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAGGTTAGCTTTTTCACCCTCTTTTGACATTTCTATGAAATGAATTAGACCCCGTTGTACTCTATTACGCGCTATCATTTCTAATCTGTGCAATTAAACCTCACATTTTTCGTACTCGAGGCTCCCAAAATAGTGTTTCTGCCCCTTAAAATCAACTGCACTTCGTTTTGGATGATACTGAGGCATTAATTTGTTTGTCTGGTTTTGACTTGACACGCGTTTAAGAAAACAAAGAGAACTTTTGAATCTTGTGTCTTAAACTAAAGATACGTAGTAGAATGTACCAAAATGTCTTTTAATCTTGTGTTCTTAAGCATGCCACGTGAAACTTTTAACCCAAAGAGTTGCCAATAAAAAGGAAATAGACATTCTTTTTTAAACGGACTGAAAAGGAAAGTAAGACAAACAAATTGAAACGGATGTAGTTTAACTGTTATTTCCAGCTTAAATTCAACCTCAATTTTTATTAGTTAAGAAATTATTGAACTTAGGAGGCTCCTAAAGATTGAATCTGTATCATCTTGAGACGAAGATGAAGGCGTTTTACTATCCTCATTTGTTTTATTTGTCTTTTACTTGTTTTGATTGATACAGTATTAGTCATTTTAGATCTGTATGACTCGAACACCTGTAAATTTCATCGTGCAGGAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAGGTAATTTGTATAGGAAACTGATGTCTTATCATACAATTTCCATCAACTACACTTTCTCTTATTGAAGCTATTCAACACTGACGGAAGGCTTTGTTATGTGTCCATAGAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAAT</genome_strand>
        <mrna_strand>CCCATGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG..........................................................................................................................................................TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT.................................................................................................................GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG..................................................................................GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG.................................................................................................................CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG...........................................................................................................AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707331" ref_strand="+" ref_description="SGN-E707331 [FA32CG12]">
      <seq>tgagaatggatgcccgtgcgcgccaagatgttgcatttcttggttcagagtttcttaagcttgatgctcgggcacgggaagatactgagaaagttgatcacaatgtaaagaaaagagccgaaagaatccagcatgttgccactattcttaaaaacatagctcaaacgagactgaagaaagctgctgatcgacactggagcgatggtgccttggaggctgatttaagacgtgccgattttgtggcaaaacagcgtgcaatggaggattctctgatggctctggagtttgtcaagaacattcatgataggatggtgagcaagatgtgcaaattgaaaagaagttccatcgatacggagaaaacaaggcatattactctagagaagaatgggaaaactctggagtttcttcctggggaagtttcagctgatcgcctcactgctatccaggaagcatattgggatatagcatctgcactttccgaagctgatggaattgactatactgatccagaagagctcgagttgttggtagcaacgcttatagatcttgatgcaatggatggtaaaagtagtgtatccttgctggccgagtgttcaagttctcctgatgtgaacacaaggaaagcattagcaaatgcacttgcagctgcaccgtccatgtggactttaggaaacgctggcatgggagcgttacagagactagcagaagatgacaaccctgccattgcagctgctgcatctaaaaccattcttgaattgaaaagacaatgggaaataggagagggagatagctggaggttcatggtggacgaagtgtcaccaggggatgtagggagtcaagatgacaacaatgggacatattagaaggtgcccgtaactcaatactgtagatatctagatgaagggactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="91800" stop="87997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91500" g_stop="91435" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91192" g_stop="91116" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="143" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91115" i_stop="91042" i_length="74">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.597" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91041" g_stop="90970" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="215" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90206" g_stop="90138" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="284" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89983" g_stop="89937" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="331" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.754" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89823" g_stop="89709" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="446" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89626" g_stop="89558" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="515" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89444" g_stop="89341" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="619" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="88695" g_stop="88620" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="695" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="88512" g_stop="88297" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="911" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E707331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91500" e_stop="91435"/>
          <exon e_start="91192" e_stop="91116"/>
          <exon e_start="91041" e_stop="90970"/>
          <exon e_start="90206" e_stop="90138"/>
          <exon e_start="89983" e_stop="89937"/>
          <exon e_start="89823" e_stop="89709"/>
          <exon e_start="89626" e_stop="89558"/>
          <exon e_start="89444" e_stop="89341"/>
          <exon e_start="88695" e_stop="88620"/>
          <exon e_start="88512" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATGGTAAAATTCTTTACCCGATTTTCAAGCTTTTACACTATGATAAAAGAACCATATTCAACTGCCTATTTGCAATTTTCATGCTGGGAATCAAAGTTCAATACTTTGATGTATATTGCTTGGATAGTGGTATTGGTGAAGGAGATAGTTGACAATAGCATTTGGATAATAACTTTTGTCATTTGATGTTGGTGATACACTCCTGATATTCTGATTGATCCGTTTTCTTTTCTTTCTTCAATTAGCTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACTGTAAGATAATTATCTACCATAAGATATTCCATCACCATCTTTTCATTGGGATGCTTATCAATTGTGCTTAGCAGATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAGGTGAATTTTTTCATTTGTGCCGTATAAATTCATGCAGTGCATTTTTTTCACTTGTTCCCTAAGGTAGCTGGAGGCAAAGTAGAGAGAATCATTTTCTTGTTTGCCATGTTGTAATTTAACTTGGATAAGATGAAGCATGCATTTTAGTGGCTCCACCAAGTAGACGGCCCATTAGAGAGGTAATTGCATAATCTCAGTCTCCAGATACATAGGGGCTTCTAATTGGAGATACAAAATGCACCAAAAGGTTATAAACTTGCGAGTACAGACAAATTGTAAGTTTTTAGGCCTTATCTATTAATAGTATTTAATTCCAAAATGAACATATTGAACCTGAGGTACATGTGATCAAAGATATAATGCGTCGAGCAGCACATGAAACCAAAGATCTAATTTATGAGTCAGGGACCTAAACTGAGTGTGGAAGTGATGTTCGATACATTCAGGCTGAAACTAGCAGAACATGTTTTCACCTCAAAATGCTGTAACATTTCCTAGTACAAGGCACATTGTGTTCAACAAGGTTATTAATGGATTAGACATGTATTGTGTTAGCATTTTCATTGATAATTCGGAAGTTCAAATCTTTATTGATCTGCTTGGCTTCTGCTACTGATTCGGAACCTCGAGAGCAGATAGCAGCTTGTTGACGACATCACTGTCTTTGCTATAAATTTATGTTGCTTTGCACAGTAGGTTCATTAAAATTATTTGGTGGCTAATATAGATAATCTAAAAGCAGCTGTTTTTCCTCAATAATCAGGCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAGGTATGGTTATTGCACAAAATGGAATTGATCTTCCATATTATGTGTTGTATGAAGATATGTTTATTTACTTCCTTCGTTTTAATAATGACTGCACTCACTACTCTATATTTATTTTTTCTTCGTGATTTCTTGTGTTTGTGTTGTGGTTTTGCAGTTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATTGTAAGTTCATTTTGCATCCTAGCAGTAATAACTAATAAAGGGAATAAATAACACAATTGATCTGACTTTAAATCTTCATCTCTGCTCCGTACTTGTATCCGTCTTCTGTTCAGGAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAGGTATCGAGCCTTGTCTACTTTCAAAGTTCTAATGAAGTAAATGAATACTTCCGTAAGTATAATTATATGTTAATACCTGCAGGAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAGGTCCCAACTTAAAAAAACTTAAATTGATAATAATGACTACGTCTGATTACCGTTGATGTATTAATTCTCTCTTCCACATCTCATTTCTTTTATAAATTTCCTGATTCGAGCAGCTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAGGTTAGCTTTTTCACCCTCTTTTGACATTTCTATGAAATGAATTAGACCCCGTTGTACTCTATTACGCGCTATCATTTCTAATCTGTGCAATTAAACCTCACATTTTTCGTACTCGAGGCTCCCAAAATAGTGTTTCTGCCCCTTAAAATCAACTGCACTTCGTTTTGGATGATACTGAGGCATTAATTTGTTTGTCTGGTTTTGACTTGACACGCGTTTAAGAAAACAAAGAGAACTTTTGAATCTTGTGTCTTAAACTAAAGATACGTAGTAGAATGTACCAAAATGTCTTTTAATCTTGTGTTCTTAAGCATGCCACGTGAAACTTTTAACCCAAAGAGTTGCCAATAAAAAGGAAATAGACATTCTTTTTTAAACGGACTGAAAAGGAAAGTAAGACAAACAAATTGAAACGGATGTAGTTTAACTGTTATTTCCAGCTTAAATTCAACCTCAATTTTTATTAGTTAAGAAATTATTGAACTTAGGAGGCTCCTAAAGATTGAATCTGTATCATCTTGAGACGAAGATGAAGGCGTTTTACTATCCTCATTTGTTTTATTTGTCTTTTACTTGTTTTGATTGATACAGTATTAGTCATTTTAGATCTGTATGACTCGAACACCTGTAAATTTCATCGTGCAGGAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAGGTAATTTGTATAGGAAACTGATGTCTTATCATACAATTTCCATCAACTACACTTTCTCTTATTGAAGCTATTCAACACTGACGGAAGGCTTTGTTATGTGTCCATAGAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAAT</genome_strand>
        <mrna_strand>TGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG..................................................................................................................................................................................................................................................CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACT..........................................................................ATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG..........................................................................................................................................................TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT.................................................................................................................GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG..................................................................................GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG.................................................................................................................CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG...........................................................................................................AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328806" ref_strand="+" ref_description="SGN-E328806 [cTOC-23-P20]">
      <seq>attcttccaagatttcatctttactaaccccaccccacccccttctctctgtgctgggtagcaaagaatttgctttgcctttcaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctgggaattttgcttttggcttgtacgatcttgtagataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagtcaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccagaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcaagcaaccacagttgggaaagttattccttcaagtcaggcaattgcagaagcttgtaaatttgcttacaacgatgccaaatttgtgaatgaaagggcgaagaatgatattgtgctgctttctcgggaaataatgagaatggatgcccgtgcgcgccaagatgttgcatttcttggttcagaagttcttaagcttgatgctcgggcacgggaagatactgagaaagttgatcacaatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="94456" stop="90851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94156" g_stop="94091" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94090" i_stop="92942" i_length="1149">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92941" g_stop="92557" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="451" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92359" g_stop="92219" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="592" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91508" g_stop="91435" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="666" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91192" g_stop="91151" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="708" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E328806" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94156" e_stop="94091"/>
          <exon e_start="92941" e_stop="92557"/>
          <exon e_start="92359" e_stop="92219"/>
          <exon e_start="91508" e_stop="91435"/>
          <exon e_start="91192" e_stop="91151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAGGTAAGACTTTTCCTTAATGTGCTATTGACTTACTTCATTCATCTGTCTTTCTTGTTTTAAGGTGAAATTGTTTAGTTTATTTGCTTTGTTTTGCTTATTTTTCCATGTGGGTGTCCATAAATGCTTCAAGATTCCATCTTTACTCTGTTAATAAAAGTTGTACCTCTTGGTTGCTGAAAATGAGGATTTTTCTGCTTGTTTAGCTTTAGTTTGACTAATTTCCATTTGGGTGTCTACGAAATTCTTCCAAGATTTCATCTTTATTGTACCCTCACTCTATTCATAAGTTGTACCTTTTGGTTGCTGAAACTGAGGATTTTTCCGTTTTGCTTAGCTTTATTTTGATTGATTGCCATGTGGGTGTCCATCAAATTTATTCAAGATTCTATCTTTATTGTGCCCTCACTCTGTTCATAAGTTGTACCTCTTGGTTGCTGAAACTGAAGATTTTTCTGCTTGTTTAGCTTTATTTTGATTGGTTTCCTTATCGGCAACTAAGTTCACTTACCCTTCGATTGAGTCTTTGGTTAAGAAAGGGAGATTTGAGGGGACATCACTAATTGTGGTCTAATCGTTACTACTGAACTTTTGAGGGTCTTGTGAAGGCTGGGTGCTTTTGAAGTTACTAGTTATTATGCATTCATAGGTGCTTTTGGTGATCCTGATTGCGATTAATGATTGAGAAGTATATGATTAATCTAGAATCCAAATTTATTGTATAACAATCCGTGTATTCTGCTTAAGTATATGTATGAACTGTTGGCAACGAGAACCATGAAATACAAAGCAGTTAAAAAAAAAACTTTTAATTTGAATCACAAAAAGGCAGTTGCTAAATGCCTAAATCTGAGCACGAACTCGAGGGAAAGCTATAGAGTACAGATGACAATACCAAAGGACGGCTAAGCGAGGCAAAGCACTCAACATGCTTTGCGCTTTGTTCAGGGCTTAAGTGCTCTTCAAGCACGCCTTCGGCAACATGAGTTTTGCAATAATACTTAATACTTTGGAACTTGATTATCTTTTTTAATTTGTGGTACTCTACCAATAAGGTCATTGTAGAGTAACCTTTGTCTTTATTCATGTTAGTAACCATTTTGATACTAGACAATTGTTTATAGTTTAAACTAAAGAATCTTATTTTGTTAGAATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCGGTACAATATATGCTAAACATTTTATGCATTATTTATTCAAGTCTTGTATCAGATTAAAATAATTACTGAGGCTAAAAAAATTCCATTATGGGTAAAATGAGAAAGTTCAAAAATCTAAATTATTTCAAAATGTAGCTGTCATTCTTTGGAACAGAAATAGTGTCACGTAAAATGGAATAGAGGGATTACTTTATACACCCCAGAAAAACGTTAGAGAGGTCAAAAAACTTAATTATAGTCCTCACCAGCCTTTTTCCCATTGAAAAAAGAAAAAACATTTTGTCATTTGTTGTATATTTAGCTTTGAATTGGGGTCAAGATATGAGGATATAATTTGTGAGCCTCCACTTAGGTAGAAGGAAGAGGACTGGCTCGTTATTAGAAATGAGATTTTGATACAGTTTACTATACTGTAGAATCAAATCTGCATGTTAAATGTTCTCTCTATGTCTGTACCTAGCAAATTCTAGAGACTATATAATTCGTTTAACAATCGAACACTGAGAGATAATTGGTGATTACAACACATTGAGATAATGTTTGTTTGATTTTTTGCTACCTCAAACTGTTATTCTCATCAGCTCCATCATCATATATTCCAGTATTTGTCAAATACCTCTGTACATCATCTTCGAAACCTACTTTATCAAATGAAATATGATACATTAGCTTCATCTCAAATATCTTCCTAATTTACTTTTACCCAACAGGGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATGGTAAAATTCTTTACCCGATTTTCAAGCTTTTACACTATGATAAAAGAACCATATTCAACTGCCTATTTGCAATTTTCATGCTGGGAATCAAAGTTCAATACTTTGATGTATATTGCTTGGATAGTGGTATTGGTGAAGGAGATAGTTGACAATAGCATTTGGATAATAACTTTTGTCATTTGATGTTGGTGATACACTCCTGATATTCTGATTGATCCGTTTTCTTTTCTTTCTTCAATTAGCTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAA</genome_strand>
        <mrna_strand>ATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAAGTTCTTAAGCTTGATG..................................................................................................................................................................................................................................................CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332987" ref_strand="+" ref_description="SGN-E332987 [cTOD-19-F12]">
      <seq>caccccctctctctctctctctctactctgtagcaaaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctgggaattttgcttttggcttgtacgatcttgtagataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagtcaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccagaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcaagcaaccacagttgggaaagttattccttcaagtcaggcaattgcagaagcttgtaaatttgcttacaacgatgccaaatttgtgaatgaaagggcgaagaatgatattgtgctgctttctcgggaaataatgagaatggatgcccgtgcgcgccaagatgttgcatttcttggttcagagtttcttaagcttgatgctcgggcacgggaagatactgagaaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="94614" stop="90861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94314" g_stop="94277" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94276" i_stop="92923" i_length="1354">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92922" g_stop="92557" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="404" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92359" g_stop="92219" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="545" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91508" g_stop="91435" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="619" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91192" g_stop="91161" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="651" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E332987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94314" e_stop="94277"/>
          <exon e_start="92922" e_stop="92557"/>
          <exon e_start="92359" e_stop="92219"/>
          <exon e_start="91508" e_stop="91435"/>
          <exon e_start="91192" e_stop="91161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCCTCTCTCTCTCTCTCTCTACTCTGTAGCAAAGGTAAAGTCTTTTTCTTTAGTGTGCTATTTACTTGATTCCTTCATCTCTTTCTTGTTGCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAGGTAAGACTTTTCCTTAATGTGCTATTGACTTACTTCATTCATCTGTCTTTCTTGTTTTAAGGTGAAATTGTTTAGTTTATTTGCTTTGTTTTGCTTATTTTTCCATGTGGGTGTCCATAAATGCTTCAAGATTCCATCTTTACTCTGTTAATAAAAGTTGTACCTCTTGGTTGCTGAAAATGAGGATTTTTCTGCTTGTTTAGCTTTAGTTTGACTAATTTCCATTTGGGTGTCTACGAAATTCTTCCAAGATTTCATCTTTATTGTACCCTCACTCTATTCATAAGTTGTACCTTTTGGTTGCTGAAACTGAGGATTTTTCCGTTTTGCTTAGCTTTATTTTGATTGATTGCCATGTGGGTGTCCATCAAATTTATTCAAGATTCTATCTTTATTGTGCCCTCACTCTGTTCATAAGTTGTACCTCTTGGTTGCTGAAACTGAAGATTTTTCTGCTTGTTTAGCTTTATTTTGATTGGTTTCCTTATCGGCAACTAAGTTCACTTACCCTTCGATTGAGTCTTTGGTTAAGAAAGGGAGATTTGAGGGGACATCACTAATTGTGGTCTAATCGTTACTACTGAACTTTTGAGGGTCTTGTGAAGGCTGGGTGCTTTTGAAGTTACTAGTTATTATGCATTCATAGGTGCTTTTGGTGATCCTGATTGCGATTAATGATTGAGAAGTATATGATTAATCTAGAATCCAAATTTATTGTATAACAATCCGTGTATTCTGCTTAAGTATATGTATGAACTGTTGGCAACGAGAACCATGAAATACAAAGCAGTTAAAAAAAAAACTTTTAATTTGAATCACAAAAAGGCAGTTGCTAAATGCCTAAATCTGAGCACGAACTCGAGGGAAAGCTATAGAGTACAGATGACAATACCAAAGGACGGCTAAGCGAGGCAAAGCACTCAACATGCTTTGCGCTTTGTTCAGGGCTTAAGTGCTCTTCAAGCACGCCTTCGGCAACATGAGTTTTGCAATAATACTTAATACTTTGGAACTTGATTATCTTTTTTAATTTGTGGTACTCTACCAATAAGGTCATTGTAGAGTAACCTTTGTCTTTATTCATGTTAGTAACCATTTTGATACTAGACAATTGTTTATAGTTTAAACTAAAGAATCTTATTTTGTTAGAATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCGGTACAATATATGCTAAACATTTTATGCATTATTTATTCAAGTCTTGTATCAGATTAAAATAATTACTGAGGCTAAAAAAATTCCATTATGGGTAAAATGAGAAAGTTCAAAAATCTAAATTATTTCAAAATGTAGCTGTCATTCTTTGGAACAGAAATAGTGTCACGTAAAATGGAATAGAGGGATTACTTTATACACCCCAGAAAAACGTTAGAGAGGTCAAAAAACTTAATTATAGTCCTCACCAGCCTTTTTCCCATTGAAAAAAGAAAAAACATTTTGTCATTTGTTGTATATTTAGCTTTGAATTGGGGTCAAGATATGAGGATATAATTTGTGAGCCTCCACTTAGGTAGAAGGAAGAGGACTGGCTCGTTATTAGAAATGAGATTTTGATACAGTTTACTATACTGTAGAATCAAATCTGCATGTTAAATGTTCTCTCTATGTCTGTACCTAGCAAATTCTAGAGACTATATAATTCGTTTAACAATCGAACACTGAGAGATAATTGGTGATTACAACACATTGAGATAATGTTTGTTTGATTTTTTGCTACCTCAAACTGTTATTCTCATCAGCTCCATCATCATATATTCCAGTATTTGTCAAATACCTCTGTACATCATCTTCGAAACCTACTTTATCAAATGAAATATGATACATTAGCTTCATCTCAAATATCTTCCTAATTTACTTTTACCCAACAGGGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATGGTAAAATTCTTTACCCGATTTTCAAGCTTTTACACTATGATAAAAGAACCATATTCAACTGCCTATTTGCAATTTTCATGCTGGGAATCAAAGTTCAATACTTTGATGTATATTGCTTGGATAGTGGTATTGGTGAAGGAGATAGTTGACAATAGCATTTGGATAATAACTTTTGTCATTTGATGTTGGTGATACACTCCTGATATTCTGATTGATCCGTTTTCTTTTCTTTCTTCAATTAGCTCGGGCACGGGAAGATACTGAGAAAGTTGAT</genome_strand>
        <mrna_strand>CACCCCCTCTCTCTCTCTCTCTCTACTCTGTAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG..................................................................................................................................................................................................................................................CTCGGGCACGGGAAGATACTGAGAAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328070" ref_strand="+" ref_description="SGN-E328070 [cTOC-22-B5]">
      <seq>attcttccaagatttcatctttactaaccccaccccacccccttctctctgtgctgggtagcaaagaatttgctttgcctttcaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctgggaattttgcttttggcttgtacgatcttgtagataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagtcaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccagaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcaagcaaccacagttgggaaagttattccttcaagtcaggcaattgcagaagcttgtaaatttgcttacaacgatgccaaatttgtgaatgaaagggcgaagaatgatattgtgctgctttctcgggaaatatgagaatggatgcccgtgcgcgccaagaatgtgcatttcttggttcagagtttcttaagcttgatgctcgggcacggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="94456" stop="91133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94156" g_stop="94091" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94090" i_stop="92942" i_length="1149">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92941" g_stop="92557" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="451" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92359" g_stop="92219" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="592" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91508" g_stop="91435" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="665" r_length="73" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91192" g_stop="91181" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="677" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E328070" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94156" e_stop="94091"/>
          <exon e_start="92941" e_stop="92557"/>
          <exon e_start="92359" e_stop="92219"/>
          <exon e_start="91508" e_stop="91435"/>
          <exon e_start="91192" e_stop="91181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAGGTAAGACTTTTCCTTAATGTGCTATTGACTTACTTCATTCATCTGTCTTTCTTGTTTTAAGGTGAAATTGTTTAGTTTATTTGCTTTGTTTTGCTTATTTTTCCATGTGGGTGTCCATAAATGCTTCAAGATTCCATCTTTACTCTGTTAATAAAAGTTGTACCTCTTGGTTGCTGAAAATGAGGATTTTTCTGCTTGTTTAGCTTTAGTTTGACTAATTTCCATTTGGGTGTCTACGAAATTCTTCCAAGATTTCATCTTTATTGTACCCTCACTCTATTCATAAGTTGTACCTTTTGGTTGCTGAAACTGAGGATTTTTCCGTTTTGCTTAGCTTTATTTTGATTGATTGCCATGTGGGTGTCCATCAAATTTATTCAAGATTCTATCTTTATTGTGCCCTCACTCTGTTCATAAGTTGTACCTCTTGGTTGCTGAAACTGAAGATTTTTCTGCTTGTTTAGCTTTATTTTGATTGGTTTCCTTATCGGCAACTAAGTTCACTTACCCTTCGATTGAGTCTTTGGTTAAGAAAGGGAGATTTGAGGGGACATCACTAATTGTGGTCTAATCGTTACTACTGAACTTTTGAGGGTCTTGTGAAGGCTGGGTGCTTTTGAAGTTACTAGTTATTATGCATTCATAGGTGCTTTTGGTGATCCTGATTGCGATTAATGATTGAGAAGTATATGATTAATCTAGAATCCAAATTTATTGTATAACAATCCGTGTATTCTGCTTAAGTATATGTATGAACTGTTGGCAACGAGAACCATGAAATACAAAGCAGTTAAAAAAAAAACTTTTAATTTGAATCACAAAAAGGCAGTTGCTAAATGCCTAAATCTGAGCACGAACTCGAGGGAAAGCTATAGAGTACAGATGACAATACCAAAGGACGGCTAAGCGAGGCAAAGCACTCAACATGCTTTGCGCTTTGTTCAGGGCTTAAGTGCTCTTCAAGCACGCCTTCGGCAACATGAGTTTTGCAATAATACTTAATACTTTGGAACTTGATTATCTTTTTTAATTTGTGGTACTCTACCAATAAGGTCATTGTAGAGTAACCTTTGTCTTTATTCATGTTAGTAACCATTTTGATACTAGACAATTGTTTATAGTTTAAACTAAAGAATCTTATTTTGTTAGAATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCGGTACAATATATGCTAAACATTTTATGCATTATTTATTCAAGTCTTGTATCAGATTAAAATAATTACTGAGGCTAAAAAAATTCCATTATGGGTAAAATGAGAAAGTTCAAAAATCTAAATTATTTCAAAATGTAGCTGTCATTCTTTGGAACAGAAATAGTGTCACGTAAAATGGAATAGAGGGATTACTTTATACACCCCAGAAAAACGTTAGAGAGGTCAAAAAACTTAATTATAGTCCTCACCAGCCTTTTTCCCATTGAAAAAAGAAAAAACATTTTGTCATTTGTTGTATATTTAGCTTTGAATTGGGGTCAAGATATGAGGATATAATTTGTGAGCCTCCACTTAGGTAGAAGGAAGAGGACTGGCTCGTTATTAGAAATGAGATTTTGATACAGTTTACTATACTGTAGAATCAAATCTGCATGTTAAATGTTCTCTCTATGTCTGTACCTAGCAAATTCTAGAGACTATATAATTCGTTTAACAATCGAACACTGAGAGATAATTGGTGATTACAACACATTGAGATAATGTTTGTTTGATTTTTTGCTACCTCAAACTGTTATTCTCATCAGCTCCATCATCATATATTCCAGTATTTGTCAAATACCTCTGTACATCATCTTCGAAACCTACTTTATCAAATGAAATATGATACATTAGCTTCATCTCAAATATCTTCCTAATTTACTTTTACCCAACAGGGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATGGTAAAATTCTTTACCCGATTTTCAAGCTTTTACACTATGATAAAAGAACCATATTCAACTGCCTATTTGCAATTTTCATGCTGGGAATCAAAGTTCAATACTTTGATGTATATTGCTTGGATAGTGGTATTGGTGAAGGAGATAGTTGACAATAGCATTTGGATAATAACTTTTGTCATTTGATGTTGGTGATACACTCCTGATATTCTGATTGATCCGTTTTCTTTTCTTTCTTCAATTAGCTCGGGCACGGG</genome_strand>
        <mrna_strand>ATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAT-ATGAGAATGGATGCCCGTGCGCGCCAAGAATGTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG..................................................................................................................................................................................................................................................CTCGGGCACGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724901" ref_strand="+" ref_description="SGN-E724901 [FC25BH12]">
      <seq>aaccccaccccctctctccccctaaaactactctgtagcaaaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctggaaattttgcttttggcttgtacgatcttgtaaataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagtcaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccaaaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcacgcacccacagttgggaaagttattccttcaagtcaggcaattgcagaaacttgtaaatttgcttacaacgatgccaaatttgtgaatgaaagggcgaagaatgatattgtgctgctttctcgggaaataatgagaatggatgcccgtgcgcgccaagatgttgcatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="94619" stop="91160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94319" g_stop="94277" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94276" i_stop="92923" i_length="1354">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92922" g_stop="92557" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="409" r_length="366" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92359" g_stop="92219" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="550" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91508" g_stop="91460" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="599" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E724901" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94319" e_stop="94277"/>
          <exon e_start="92922" e_stop="92557"/>
          <exon e_start="92359" e_stop="92219"/>
          <exon e_start="91508" e_stop="91460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCACCCCCTCTCTCTCTCTCTCTCTACTCTGTAGCAAAGGTAAAGTCTTTTTCTTTAGTGTGCTATTTACTTGATTCCTTCATCTCTTTCTTGTTGCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAGGTAAGACTTTTCCTTAATGTGCTATTGACTTACTTCATTCATCTGTCTTTCTTGTTTTAAGGTGAAATTGTTTAGTTTATTTGCTTTGTTTTGCTTATTTTTCCATGTGGGTGTCCATAAATGCTTCAAGATTCCATCTTTACTCTGTTAATAAAAGTTGTACCTCTTGGTTGCTGAAAATGAGGATTTTTCTGCTTGTTTAGCTTTAGTTTGACTAATTTCCATTTGGGTGTCTACGAAATTCTTCCAAGATTTCATCTTTATTGTACCCTCACTCTATTCATAAGTTGTACCTTTTGGTTGCTGAAACTGAGGATTTTTCCGTTTTGCTTAGCTTTATTTTGATTGATTGCCATGTGGGTGTCCATCAAATTTATTCAAGATTCTATCTTTATTGTGCCCTCACTCTGTTCATAAGTTGTACCTCTTGGTTGCTGAAACTGAAGATTTTTCTGCTTGTTTAGCTTTATTTTGATTGGTTTCCTTATCGGCAACTAAGTTCACTTACCCTTCGATTGAGTCTTTGGTTAAGAAAGGGAGATTTGAGGGGACATCACTAATTGTGGTCTAATCGTTACTACTGAACTTTTGAGGGTCTTGTGAAGGCTGGGTGCTTTTGAAGTTACTAGTTATTATGCATTCATAGGTGCTTTTGGTGATCCTGATTGCGATTAATGATTGAGAAGTATATGATTAATCTAGAATCCAAATTTATTGTATAACAATCCGTGTATTCTGCTTAAGTATATGTATGAACTGTTGGCAACGAGAACCATGAAATACAAAGCAGTTAAAAAAAAAACTTTTAATTTGAATCACAAAAAGGCAGTTGCTAAATGCCTAAATCTGAGCACGAACTCGAGGGAAAGCTATAGAGTACAGATGACAATACCAAAGGACGGCTAAGCGAGGCAAAGCACTCAACATGCTTTGCGCTTTGTTCAGGGCTTAAGTGCTCTTCAAGCACGCCTTCGGCAACATGAGTTTTGCAATAATACTTAATACTTTGGAACTTGATTATCTTTTTTAATTTGTGGTACTCTACCAATAAGGTCATTGTAGAGTAACCTTTGTCTTTATTCATGTTAGTAACCATTTTGATACTAGACAATTGTTTATAGTTTAAACTAAAGAATCTTATTTTGTTAGAATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCGGTACAATATATGCTAAACATTTTATGCATTATTTATTCAAGTCTTGTATCAGATTAAAATAATTACTGAGGCTAAAAAAATTCCATTATGGGTAAAATGAGAAAGTTCAAAAATCTAAATTATTTCAAAATGTAGCTGTCATTCTTTGGAACAGAAATAGTGTCACGTAAAATGGAATAGAGGGATTACTTTATACACCCCAGAAAAACGTTAGAGAGGTCAAAAAACTTAATTATAGTCCTCACCAGCCTTTTTCCCATTGAAAAAAGAAAAAACATTTTGTCATTTGTTGTATATTTAGCTTTGAATTGGGGTCAAGATATGAGGATATAATTTGTGAGCCTCCACTTAGGTAGAAGGAAGAGGACTGGCTCGTTATTAGAAATGAGATTTTGATACAGTTTACTATACTGTAGAATCAAATCTGCATGTTAAATGTTCTCTCTATGTCTGTACCTAGCAAATTCTAGAGACTATATAATTCGTTTAACAATCGAACACTGAGAGATAATTGGTGATTACAACACATTGAGATAATGTTTGTTTGATTTTTTGCTACCTCAAACTGTTATTCTCATCAGCTCCATCATCATATATTCCAGTATTTGTCAAATACCTCTGTACATCATCTTCGAAACCTACTTTATCAAATGAAATATGATACATTAGCTTCATCTCAAATATCTTCCTAATTTACTTTTACCCAACAGGGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTT</genome_strand>
        <mrna_strand>AACCCCACCCCCTCTCTCCCCCTAAAACTACTCTGTAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGAAATTTTGCTTTTGGCTTGTACGATCTTGTAAATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAAAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCACGCACCCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAACTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333416" ref_strand="+" ref_description="SGN-E333416 [cTOD-20-B10]">
      <seq>caccccctctctctctctctctctactctgtagcaaaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctgggaattttgcttttggcttgtacgatcttgtagataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagtcaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccagaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcaagcaaccacagttgggaaagttattccttcaagtcaggcaattgcagaagcttgtaaatttgcttaccacgatgccaaatttgtgaatgaaaaggcgaagaatgatattgtgctgctttctcgggaaaaatgagaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="94614" stop="91910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94314" g_stop="94277" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94276" i_stop="92923" i_length="1354">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92922" g_stop="92557" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="404" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92359" g_stop="92219" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="545" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E333416" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94314" e_stop="94277"/>
          <exon e_start="92922" e_stop="92557"/>
          <exon e_start="92359" e_stop="92219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCCTCTCTCTCTCTCTCTCTACTCTGTAGCAAAGGTAAAGTCTTTTTCTTTAGTGTGCTATTTACTTGATTCCTTCATCTCTTTCTTGTTGCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAGGTAAGACTTTTCCTTAATGTGCTATTGACTTACTTCATTCATCTGTCTTTCTTGTTTTAAGGTGAAATTGTTTAGTTTATTTGCTTTGTTTTGCTTATTTTTCCATGTGGGTGTCCATAAATGCTTCAAGATTCCATCTTTACTCTGTTAATAAAAGTTGTACCTCTTGGTTGCTGAAAATGAGGATTTTTCTGCTTGTTTAGCTTTAGTTTGACTAATTTCCATTTGGGTGTCTACGAAATTCTTCCAAGATTTCATCTTTATTGTACCCTCACTCTATTCATAAGTTGTACCTTTTGGTTGCTGAAACTGAGGATTTTTCCGTTTTGCTTAGCTTTATTTTGATTGATTGCCATGTGGGTGTCCATCAAATTTATTCAAGATTCTATCTTTATTGTGCCCTCACTCTGTTCATAAGTTGTACCTCTTGGTTGCTGAAACTGAAGATTTTTCTGCTTGTTTAGCTTTATTTTGATTGGTTTCCTTATCGGCAACTAAGTTCACTTACCCTTCGATTGAGTCTTTGGTTAAGAAAGGGAGATTTGAGGGGACATCACTAATTGTGGTCTAATCGTTACTACTGAACTTTTGAGGGTCTTGTGAAGGCTGGGTGCTTTTGAAGTTACTAGTTATTATGCATTCATAGGTGCTTTTGGTGATCCTGATTGCGATTAATGATTGAGAAGTATATGATTAATCTAGAATCCAAATTTATTGTATAACAATCCGTGTATTCTGCTTAAGTATATGTATGAACTGTTGGCAACGAGAACCATGAAATACAAAGCAGTTAAAAAAAAAACTTTTAATTTGAATCACAAAAAGGCAGTTGCTAAATGCCTAAATCTGAGCACGAACTCGAGGGAAAGCTATAGAGTACAGATGACAATACCAAAGGACGGCTAAGCGAGGCAAAGCACTCAACATGCTTTGCGCTTTGTTCAGGGCTTAAGTGCTCTTCAAGCACGCCTTCGGCAACATGAGTTTTGCAATAATACTTAATACTTTGGAACTTGATTATCTTTTTTAATTTGTGGTACTCTACCAATAAGGTCATTGTAGAGTAACCTTTGTCTTTATTCATGTTAGTAACCATTTTGATACTAGACAATTGTTTATAGTTTAAACTAAAGAATCTTATTTTGTTAGAATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG</genome_strand>
        <mrna_strand>CACCCCCTCTCTCTCTCTCTCTCTACTCTGTAGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACCACGATGCCAAATTTGTGAATGAAAAGGCGAAGAATGATATTGTGCTGCTTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303168" ref_strand="+" ref_description="SGN-E303168 [cLEX-5-D2]">
      <seq>aaaggttttcggttaatgctttgttaaatactttttcgtctctccggaaacagctgggaattttgcttttggcttgtacgatcttgtagataaccatggctaccccaaatgggatcatttattattctgctaaatcacctcaacacccaaaggttcacacccacagtcaagggactgaacatagcaaacacaacggatattctaatatgccaagactgaagttttctaataagaggttctgggaggcatgcggaaaactaagcaaccgtgtcatcttcaggggatctcctgtgttatgtctctcaacagaaacacgcgacactgagacagagtgtgccagaaacagtgatgattgttccaatatatctagtgtacaagaaaatgatcaagcgaccacagttgggaaagttattccttcaagtcaggcaattgcagaagcttgtaaatttgcttacaacgatgccaaatttgtgaatgaaagggcgaagaatgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="93224" stop="91933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92922" g_stop="92557" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="370" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92359" g_stop="92233" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="497" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E303168" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92922" e_stop="92557"/>
          <exon e_start="92359" e_stop="92233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAGGTAAGCATTGTTCAACAACAAATGGTCGATCAATGCACACCACCAAAAATATGAAAAGAACTGTCTACAAATGAAAATTTAAGACTGTCATTATCATTAGTTTTAGTTCTTTACAACACTATTATAATGTTGCTTATTCGATTTCTTGTGTTGATATGATTGTAATTTTTGTTCATCTCTGGACTATATTTTTGCAGTGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATT</genome_strand>
        <mrna_strand>GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG.....................................................................................................................................................................................................TGTACAAGAAAATGATCAAGCGACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695973" ref_strand="+" ref_description="SGN-E695973 [LH_Ea07O19](-)">
      <seq>ggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcaggtttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaggagttgaggttggattctgagttcgttgttgaaactgagccgttggatcaattaggaagagtgaagagtagtaagttttgtttgttcttctacgaagctgaatcgacgttggatttgacggcagcaatggcggcgggatgtgttccggcagtgattgttgaccgtccggtacaggattttccgttgatggacgtattgaggtggtcggaaatggcactattgatcggaaaccgccgtggaggtcagggattgaaggcggtcctgagcggtgtgccggaggatagatatgagcggatgaggcgattgtgtgtggcggcggctcaccatatggtgtggaacgcggaacctcaggcgtacgatgcatttcatatggtgatgtatcagctgtggatgagacggcatacgattagatacactcggagggaagaattttagagttgaaaaattcaatttcttttgcttgtagaattagtgcatgattaataatactataatcctaattaatgggtcaataaattgtatgctgcctttttagaatgattgtaatttgattgctccctaaaggacatgtttaaagtaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103335" stop="101894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103035" g_stop="102199" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="836" polyA_stop="856"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E695973" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103035" e_stop="102199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTGAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTGTTGATCGGAAACCGCCGTGGAGGTCAGGGACTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATCAGCGGATGAGGGGATTGTGTGTAGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCTTTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGTGTTG-AAAATTCAATTTCTTTTGCTTGTAGAATTAGTATATGATTAATAATACTATAATCCTAATTAACGGGTCAATAAATTGTATGCTGCC--TTTATAATGATTGTAATTTGTTTACTCCCTAAAAGGACATGTTAAAA</genome_strand>
        <mrna_strand>GGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGGTTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAAT-C-CTCTC-T-C-GT-CCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCTGAGTTCGTTGTTGAAACTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTTTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACGGCAGCAATGGCGGCGGGATGTGTTCCGGCAGTGATTGTTGACCGTCCGGTACAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTATTGATCGGAAACCGCCGTGGAGGTCAGGGATTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATGAGCGGATGAGGCGATTGTGTGTGGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCATTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGAGTTGAAAAATTCAATTTCTTTTGCTTGTAGAATTAGTGCATGATTAATAATACTATAATCCTAATTAATGGGTCAATAAATTGTATGCTGCCTTTTTAGAATGATTGTAATTTGATTGCTCCCT-AAAGGACATGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543643" ref_strand="+" ref_description="SGN-E543643 [TUS-65-J2](-)">
      <seq>actgtcccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaggagttgaggttggattcggagttcgtcgttgaatctgagccgttggatcaattaggaagagtgaagagtagtaagttttgtctgttcttctacgaagctgaatcgacgttggatttgactgaagcaatggcggcgggatgtgttccggtagtgattgttgaccgtccggttcaggattttccgttgatggacgtattgaggtggtcggaaatggcactgttgatcggaaaccgccgtggaggtcagggactgaaggcggtcctgagcggtgtgccggaggatagatatcagcggatgaggggattgtgtgtagcggcggctcaccatatggtgtggaacgcggaacctcaggcgtacgatgcttttcatatggtgatgtatcagctgtggatgagacggcatacgattagatacactcggagggaagaattttagtgttgaaaattcaatttcttttgcttgtagaattagtatatgattaataatactataatcctaattaacgggtcaataaattgtatgctgcctttataatgattgtaatttgtttactccctaaaaggacatgttaaaagtaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103157" stop="101894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102857" g_stop="102199" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="682"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E543643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102857" e_stop="102199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTGAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTGTTGATCGGAAACCGCCGTGGAGGTCAGGGACTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATCAGCGGATGAGGGGATTGTGTGTAGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCTTTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGTGTTGAAAATTCAATTTCTTTTGCTTGTAGAATTAGTATATGATTAATAATACTATAATCCTAATTAACGGGTCAATAAATTGTATGCTGCCTTTATAATGATTGTAATTTGTTTACTCCCTAAAAGGACATGTTAAAA</genome_strand>
        <mrna_strand>ACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTGAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTGTTGATCGGAAACCGCCGTGGAGGTCAGGGACTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATCAGCGGATGAGGGGATTGTGTGTAGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCTTTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGTGTTGAAAATTCAATTTCTTTTGCTTGTAGAATTAGTATATGATTAATAATACTATAATCCTAATTAACGGGTCAATAAATTGTATGCTGCCTTTATAATGATTGTAATTTGTTTACTCCCTAAAAGGACATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727405" ref_strand="+" ref_description="SGN-E727405 [LA14CD07]">
      <seq>cgaaagttaaccataataaatcaggagtgagttcggtgtgaaaggattctcgctcaacggagaaatggcaactttcactttctcattgtgttttatactcttcctctttgtcttagttcatccttcttcgtcttcgtcttcgttttcgccttatctatatccgtcaacgttttccatgaactacgataagatgcttacgagtttcaaagttttcatatatccaacgactcaacgaattattttttttagtccgtcagcttcaaatttctacgaatctctcattaacagcgcgtttatcactcaggagcctgaagaagctgatctgttcttcgtggttttctctccggagatatctagtcgttctcaggcgcggcttgttcgtgagctgagaacgaagtatccttactggaaccggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcagatttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtactgtcccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaggagttgaggttggattcggagttcgtcgttgaatctgagccgttggatcaattaggaagagtgaagagtagtaagttttgtctgttcttctacgaagctgaatcgacgttggatttgactngaagcatggcggcgggatgtgttcccgtagtgattgttgaccgtccggttcaggattttccgttgatggacgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103748" stop="102274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103448" g_stop="102574" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E727405" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103448" e_stop="102574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGTTAACCATAATAAATCAGGAGTGAGTTCGGTGTGAAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACT-GAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGA</genome_strand>
        <mrna_strand>CGAAAGTTAACCATAATAAATCAGGAGTGAGTTCGGTGTGAAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTNGAAGC-ATGGCGGCGGGATGTGTTCCCGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692133" ref_strand="+" ref_description="SGN-E692133 [LH_Ea07O19]">
      <seq>taacccctaaactccaaacaatatagtatatgatattcgattgatcgaacagagacgaaagttaaccgtagtaatatcggagtgagattggtgtggaaggattctcgctcaacggagaaatggcaactttcactttctcattgtgttttctactcttcctctttgtcttagttcatccttcttcgtcttcgtcttcgttttcgccttatttatatccgtcaacgttttccatgaactacgataagatgcttacgagtttcaaagttttcatatatccaacgactcaacgaattattttttttagtccgtcagcttcaaatttctacgaatctctcattaacagcgcgtttatcactcaggagcctgaagaagctgatctgttcttcgtggttttctctccggagatatctagtcgttctcaggcgcggcttgttcgtgagctgagaacgaagtatccttactggaaccggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcaggtttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaggagttgaggttggattctgagttcgttgttgaaactgagccgttggatcaattaggaagagtgaagagtagtaagttttgtttgttcttctacaaagctgaatcgacgttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103796" stop="102357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103506" g_stop="102657" g_length="850"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E692133" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103506" e_stop="102657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCTTATTAAACTCCAAACAATATAGTATATGATATTCGACTGATCGAACAGAGACGAAAGTTAACCATAATAAATCAGGAGTGAGTTCGGTGTGAAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTT</genome_strand>
        <mrna_strand>TAACCCCTA--AA-CTCCAAACAATATAGTATATGATATTCGATTGATCGAACAGAGACGAAAGTTAACCGTAGTAATATCGGAGTGAGATTGGTGTGGAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTCTACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATTTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGGTTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAAT-C-CTCTC-T-C-GT-CCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCTGAGTTCGTTGTTGAAACTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTTTGTTCTTCTACAAAGCTGAATCGACGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337188" ref_strand="+" ref_description="SGN-E337188 [cTOE-7-A5]">
      <seq>tcaggagcctgaagaagctgatctgttcttcgtggttttctctccggagatatctagtcgttctcaggcgcggcttgttcgtgagctgagaacgaagtatccttactggaaccggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcagatttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtactgtcccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaggagttgaggttggattcggagttcgtcgttgaatctgagccgttggatcaattatgaagagtgaagagtagtaagttttgtctgttcttcaaatttctacgaatctctcatttacagcgcgtttatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103448" stop="102381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103148" g_stop="102683" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E337188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103148" e_stop="102683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTC</genome_strand>
        <mrna_strand>TCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTATGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543644" ref_strand="+" ref_description="SGN-E543644 [TUS-65-J2]">
      <seq>gcaactttcactttctcattgtgttttatactcttcctctttgtcttagttcatccttcttcgtcttcgtcttcgttttcgccttatctatatccgtcaacgttttccatgaactacgataagatgcttacgagtttcaaagttttcatatatccaacgactcaacgaattattttttttagtccgtcagcttcaaatttctacgaatctctcattaacagcgcgtttatcactcaggagcctgaagaagctgatctgttcttcgtggttttctctccggagatatctagtcgttctcaggcgcggcttgttcgtgagctgagaacgaagtatccttactggaaccggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcagatttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtactgtcccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggacgggaagacggaggcggagttggtggaaggaagttgaggttgggattcggagttcgtcgttgaatctgagccgttggatcaattaggaagagtgaagagtagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103681" stop="102397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103381" g_stop="102697" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E543644" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103381" e_stop="102697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGA-GG-AGTTGAGGTT-GGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGT</genome_strand>
        <mrna_strand>GCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAAGGAAGTTGAGGTTGGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304672" ref_strand="+" ref_description="SGN-E304672 [cLEX-11-M7]">
      <seq>caactttcactttctcattgtgttttatactcttcctctttgtcttagttcatccttcttcgtcttcgtcttcgttttcgccttatctatatccgtcaacgttttccatgaactacgataagatgcttacgagtttcaaagttttcatatatccaacgactcaacgaattattttttttagtccgtcagcttcaaatttctacgaatctctcattaacagcgcgtttatcactcaggagcctgaagaagctgatctgttcttcgtggttttctctccggagatatctagtcgttctcaggcgcggcttgttcgtgagctgagaacgaagtatccttactggaaccggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcagatttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtactgtcccacgcgccggtgaatatggatcgttcgtgtttaggttatctgaaatgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103680" stop="102500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103380" g_stop="102800" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E304672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103380" e_stop="102800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGAC</genome_strand>
        <mrna_strand>CAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305068" ref_strand="+" ref_description="SGN-E305068 [cLEX-10-L24]">
      <seq>gagaaatggcaactttcactttctcattgtgttttatactcttcctctttgtcttagttcatccttcttcgtcttcgtcttcgttttcgccttatctatatccgtcaacgttttccatgaactacgataagatgcttacgagtttcaaagttttcatatatccaacgactcaacgaattattttttttagtccgtcagcttcaaatttctacgaatctctcattaacagcgcgtttatcactcaggagcctgaagaagctgatctgttcttcgtggttttctctccggagatatctagtcgttctcaggcgcggcttgttcgtgagctgagaacgaagtatccttactggaaccggacgttaggagctgatcatttttttatctcaccggaaggaattgatttttcttctgatagaaatgcacttgagctgaagaaaaattcagttcagatttcggtttttccgactgtttcaggtaagtttatacctcataaggatatcagtttgtctccggtgagtaaatcctctctcgtactgtcccacgcgccggtgaatatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="103689" stop="102529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103389" g_stop="102829" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E305068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103389" e_stop="102829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATC</genome_strand>
        <mrna_strand>GAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548231" ref_strand="+" ref_description="SGN-E548231 [TUS-59-E19](-)">
      <seq>ctattaattcatggttatggagtgctatcttccacggtcgagacatggatttacagaaaagctagactactcatctgctgtggcattacttggattttccctgattgtatcagtactaagaagtttcagtgtaaagaatgaggctacgagagttctggttgctgctccattgcttgccttcaccaccactcatatactgtacctgaacaactatcaaatggactacggatggaacatgaaagtttgtgttgtgatagctgtttctcaacttctaatttggtcaatctgggctggaataagccatcatccttcccggtggaagttgtggacggtggttgttggaggtggcctcgctatgctcctagagatctacgacttccctccatatcaaggactcgtagatgctcatgcactttggcatgccaccacaatccctcttacctatatctggtggagtttcatcaaggatgacgcgaagtttggaacttccaactcgagtaaaaaagacgagtagtgttttttgacagggttttaaagttttatattgcttgatcagttttttgacataagagagctatagcaagtactcaaatagtaactccttttatgttccttcttgcaagtagaggatgtttgtttgtgctagaaaaaatagaaatcaaagtttttcagcctatagaagagtgtcatattacttagaggcagattcaagattttaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="107058" stop="104877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106758" g_stop="106719" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106521" g_stop="106334" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="227" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106333" i_stop="105673" i_length="661">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105672" g_stop="105169" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="732" r_length="505" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E548231" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106758" e_stop="106719"/>
          <exon e_start="106521" e_stop="106334"/>
          <exon e_start="105672" e_stop="105169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCGGTAAGTTTATGATTTGGCAGTCTTGGTAATGCTGATTTTGATTTCCTAACTTACCAATATATAGTTTGGGCTTTTCTTTATAATTGTATGCAGTTAGAATTTGTTGGCAGTGCCTGCCTATCTGGCTTGACGTTTATCTTTTCTTGCAATATTAGTTCAGCATACCAATTAAATTATTTTTTGTTTATTTATTGTAGAGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACGGTAATGTCATCATCTCTCCTGTTAAATTTACGACAAAATGTGCTTCCCTTGACAATAAGATATCGAGTGTATTTATGGAAAAACAAGCACCAGATACTTAATTAACTTGAGTAAGAAAGGATAAAATGCAATATTGATTTTGGGTTGAGTTATTTGCATTTTGATGTACAAGTTGATTATAAATTGCCGACGGTGAATCTTAATAGCTTAGTTGGTTGGGTACCTAAACTTTCACCTTGTTGCTTTGGGTTCGATTCTGAACCTAGTAATCCCCTCTCCCATTTCCCCTTCTCCTACCCCCCCCTTTTTTTTTTAAAAAAAAGGTCATAATTGCAGACTCTCGAAGTCAAGCAATACCAAATCAAATTTGGCGAGTAGTGGGGTCCTGAGCTAAGCCTTGGAAATCGTAATGCCATAATACTTTTCAAAACCCCCCTGATCATTATCATGGTCCTACTACAGTTATTCGTGCTAAGATGAATGCCTATGTTGTAGTGATTCCACCCAAACGGTCTTTATATGATCCTTCCGGCTCTCGGCTATTCTTGTTTGACATCATTTGTGTCTCAGAAAGGGTTGAAAAGTGTAGGAAGCTATTTCTTGTAGTCATGATTTCTTCTGGTGTTTATATCTGATGTTAATTTCTGTGATAAATTCTCAGGATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTG-TTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATAAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAACTAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTGCTTAGAAGCAGATTCAAGATTTTAATTTAACGGGTTCA</genome_strand>
        <mrna_strand>CTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG.....................................................................................................................................................................................................AGACATGGA-TTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCATTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTGTTTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATCAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAAATAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTACTTAGAGGCAGATTCAAGATTTTAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252096" ref_strand="+" ref_description="SGN-E252096 [cLEG-8-A15]">
      <seq>tttaaataattcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattcaaagagaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaacgcgtctttgggcttcaggagcctgtttctgttgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttactacaagttacgatcaaatgccgatgagacgacctgctacagttacacgagtttgtggcacatctatgcgttcttgtctattaattcatggttatggagtgctatcttccacggtcgagacatggattttacagaaaagctagactactcatctgctgtggcgttacttggattttccctgattgtatcagtactaagaagtttcagtgtaaagaatgaggctacgagagttctggttgctgctccattgcttgccttcaccaccactcatatactgtacctgaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="107520" stop="106050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107220" g_stop="107028" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106915" g_stop="106719" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="390" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106521" g_stop="106350" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="562" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E252096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107220" e_stop="107028"/>
          <exon e_start="106915" e_stop="106719"/>
          <exon e_start="106521" e_stop="106350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCGGTAAGTTTATGATTTGGCAGTCTTGGTAATGCTGATTTTGATTTCCTAACTTACCAATATATAGTTTGGGCTTTTCTTTATAATTGTATGCAGTTAGAATTTGTTGGCAGTGCCTGCCTATCTGGCTTGACGTTTATCTTTTCTTGCAATATTAGTTCAGCATACCAATTAAATTATTTTTTGTTTATTTATTGTAGAGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAAC</genome_strand>
        <mrna_strand>TTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG................................................................................................................GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG.....................................................................................................................................................................................................AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710969" ref_strand="+" ref_description="SGN-E710969 [FA57CC01]">
      <seq>ctttagccataaaaattggtgaattgaagaaatatgaatccttttgctaattgataaacaaatttgagtatccttttgtgaatctaacaagatggcagattgttattggatcactttcttggtagttttattttgtcttgttggagcttttgatgctagtgctggagatgctgaccctttgtacagggcttgttttggccaatgtaaagagaccggatgtgctggagaaacatgcttcggccattgcaatactcctttaaataattcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattcaaagagaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaacgcgtctttgggcttcaggagcctgtttctgttgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttactacaagttacgatcaaatgccgatgagacgacctgctacagttacacgagtttgtggcacatctatgcgttcttgtctattaattcatggttatggagtgctatcttccacggtcgagacatggattttacagaaaagctagactactcatctgctgtggcgttacttggattttccctgattgtatcagtactaagaagtttcagtgtaaagaatgaggctacgagagttctggttgctgctccattgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="110615" stop="106084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110315" g_stop="110225" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109992" g_stop="109898" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="186" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107289" g_stop="107028" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="448" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106915" g_stop="106719" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="645" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106521" g_stop="106384" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="783" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E710969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110315" e_stop="110225"/>
          <exon e_start="109992" e_stop="109898"/>
          <exon e_start="107289" e_stop="107028"/>
          <exon e_start="106915" e_stop="106719"/>
          <exon e_start="106521" e_stop="106384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAGGTAATTTGCTTGTCTAACCCTTTATTTCTTCCAAATTTTCAATTTCAAATGTAAAAATCAAATCTTGGACCTTTTTTTTTTCTTCAAATCTGGGGTTTGGAGTTAAAAATAAAATCTTGGAGCCTTTTTTCTATTTGGGGTTTGGAAGATAGAAACTAGTTTATTAAATTTGTGAGATGATATGTAAGATATGAGATTAAAGATTTGATTTTTATGAATTTTGTGATATCAGATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAGGTAACATTTTCTGATAATTTTGCCTTATGGTTAATCGAGGTAATGGTAAAGTGTGCGTATACACTACCCTTCCCAGACCGCACTTGTGGGATTCCATTGGGTATTTTGTTGTTTTATCTTATGCTTAGTATTTATGAGATTTTTCATTTTCTACTTTTGATTTTTAGTAGTTTAGGCCAAAGTGTAAAGATATAATATAGATTCATTTGAATGATTTGGAATCACAATTTATATGTGCATTAGTTTTTCTTGTTTTGAAAAAGGTAGTAATGTATTATATAAGAAGCACCAAGAAAGTCAATGGTATGTAAAATTGAGCAAAATCAAGAACCTATGATGAATCCCATTTTAATCTTGTAGGATCATAGGAAACTAAGTATAACTCGACTTCGTTCATGGGTTCCTCTTTACACCAAAAAAATGAACGAAGGCGTGCTGTTGAACTTGATCTGTTGAATCGAGTTAGCTTTATCTTTGAAGTATCTAGTATTCCTTTTCCTTCCAAATGGTCCACCAAGTGCATGTTGGAATGGTATTCCATTAGATTGCCTTCCCTTTCTTCCTTCTCGTTTTGTACTACAAGCGCAGCAAATATGTTGAGTTTTTGGGCATCCAAGGACGGATTGTGTGTAGGTTATCTTATCGATTGATCTGAATCCAGTAGCTTTGCTTGAACCCTGTATATGTGTTAGAAAATCTACAAGATAAGTAAAAATAGTAGATTTTGACCCCCGTAAATTAAATGGGATGGTAGAATCTGGAACTCGAATCCAAAATGTTTAAATCCTAGATCCATCTCTATGGCCATCAACTCTCCAAGACTTTCACTATGTCAAGAAATAGATGTGAAAGCTGGCAGCCACCTTACAATGAATGAACAGATGGCTCACATTTTCCAATTCAATTGCGCAAGGTTAACACCTGCTGCTTAACTTGAACACCTTCTTTGAAGATGTTCCCTTGTAAGCTACTTTGTAAGGAGCTTGAGTTTCCAGATCCTGAATTCTAGGATGGTTGTTTTCTGTTGCAGCTTGTGTCTAAGCTCTGTAGAGGGACTGAACCATGAAGATGCCATTACTGTGAGATTTCCATATCATTCTGGCAGAATTACTGTTGGAGTTTTGCAAAGGCTCCCGTTCCAGTGCAGTAACATTGACTTGGGGGAATCCTTTTCAGTGCTTTTTCGATACTCCTTTTTGACTTATAGTTTGTTGTGGAAAAGATTTAATCTTTTTCATACTCGAATGGCATCATTGAGGAAGGAACTGGTTAGCGACTTTAAGAATGATATACATTAGTATATTTGGGAGATCGGGTCGAGTAGGTTCCCAGTTAGAGTGTTTTAAGGTTCCATCATATCAATCAATTAAGCATCAGTCCCAATTAGTTAGGGTCGCCTGTATGAATCATATATATCTATTTCGTTCTTCAGGCCCATTTTTGTCCAATACTAACTATTGTCTTTAACCAAATGAGGGGTTCTCTAAAACTAGAAGTTCGTTATTCTCTTACTTATCTGAACATAGAAATACTAGTATCTGATTAGAATAAAATGGCTCATTACAAACACCAGATGTAATGGAAGTGTAACATCAACTGTTACGATTTGGTATGACTTGCATAGAAGGTTTGCTACTGTTCTGTTTTGTTCTTAGTTAAGTCCCTATATATTTTAAGAGATTATAGGTCTCTTTGAGATAGTCTTACTCTAGGTAACTTTGGTTTGACTTGACCTTCTACCACATTCATTCATCATAGCGTCTCATTTATGGACCTGTTGTATTGAGGTTTACATAAAATATGATAGATCTTCTCAGAAAACCTTCTCTCAACTATTATATGTTTTACTTATGCTCTCTATTAGATATGACCATTTTTAATCTTGTGTTACTTCACATCAATCTAAGCATCCATTTTTCATACAACAATCATCTTTAAAGGCCCAACAATCACAATTACAATACATTATTTGTCTCTCAAGTGATCTAAAGAACTTGCCTTTTACTCAACTTAGAGAAATCCCTTTTTTTTTCTGTATTAAGTTGAAATATCTACAATGACATAAGCTATAACTAATTACAACTATGCAAACATTATCTTTCTGTAAAGAGAAGGAAAATGCACTTATTATATGCACATTTTTTTATCAGAATGCCAAAGTAGTGGTACTGTCCCATTGTACCTAATCACGATTATGCAAACTCAAAAAAATTTGGGGTCTGCAGAGTTGGTTAGTTGGGGTGGGCAGATATATATAGCCTGGGAGATTGAGGAAAATGTTAGGGATGGGAAAAGAGTAAGAAGAGCATAGACAAGAATTTGTCAAGTTCTTGGTGTGCAAGGTCGAAGGCATTAAGACACTGGATTAAGCTCTTTCCAGTTTGTGATCACGAATTTTTGGTGTAAGCTCATTATACAGAGACTGAAAGGAAACAAAAGAAAAAAACGAGGTCCCCACACAAATGCAGTTCATCACGTTGGATATTGTGAATGATTGTGAAAAACTGGTCTTTTTTGTTTCTACTTCAATTCAGAAAAGTTCTACTCCTGTTCTCGTGCACTTAACAATCCAACACGATATTTTTGAATTATCATTTCTATGATTTAGGGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCGGTAAGTTTATGATTTGGCAGTCTTGGTAATGCTGATTTTGATTTCCTAACTTACCAATATATAGTTTGGGCTTTTCTTTATAATTGTATGCAGTTAGAATTTGTTGGCAGTGCCTGCCTATCTGGCTTGACGTTTATCTTTTCTTGCAATATTAGTTCAGCATACCAATTAAATTATTTTTTGTTTATTTATTGTAGAGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGC</genome_strand>
        <mrna_strand>CTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG........................................................................................................................................................................................................................................ATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG................................................................................................................GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG.....................................................................................................................................................................................................AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539505" ref_strand="+" ref_description="SGN-E539505 [TUS-59-E19]">
      <seq>cttttacctttctcctcacttgctttggattctcctctcctttagccataaaaattggtgaattgaagaaatatgaatccctttgctaattgataaacaaatttgagtatccttttgtgaatctaacaagatggcagattgttattggatcactttctcggtagttttattttgtcttgttggagcttttgatgctagtgctggagatgctgaccctttgtacagggcttgttttggccaatgtaaagagaccggatgtgctggagaaacatgcttcggccattgcaatactcctttaaatagttcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattcaaagagaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaacgcgtctttgggcttcaggagcctgtttctgttgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttactacaagttacgatcaaatgccgatgagacgacctgctacagttacacgagtttgtggcacatctacgcgttcttgtctattaattcatggttatggagtgctatcttccacggtcgagacatggattttacagaaaagctagactactcatctgctgtggcattacttggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="110654" stop="106163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110354" g_stop="110225" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109992" g_stop="109898" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="225" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107289" g_stop="107028" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="487" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106915" g_stop="106719" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="684" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106521" g_stop="106463" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="743" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E539505" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110354" e_stop="110225"/>
          <exon e_start="109992" e_stop="109898"/>
          <exon e_start="107289" e_stop="107028"/>
          <exon e_start="106915" e_stop="106719"/>
          <exon e_start="106521" e_stop="106463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAGGTAATTTGCTTGTCTAACCCTTTATTTCTTCCAAATTTTCAATTTCAAATGTAAAAATCAAATCTTGGACCTTTTTTTTTTCTTCAAATCTGGGGTTTGGAGTTAAAAATAAAATCTTGGAGCCTTTTTTCTATTTGGGGTTTGGAAGATAGAAACTAGTTTATTAAATTTGTGAGATGATATGTAAGATATGAGATTAAAGATTTGATTTTTATGAATTTTGTGATATCAGATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAGGTAACATTTTCTGATAATTTTGCCTTATGGTTAATCGAGGTAATGGTAAAGTGTGCGTATACACTACCCTTCCCAGACCGCACTTGTGGGATTCCATTGGGTATTTTGTTGTTTTATCTTATGCTTAGTATTTATGAGATTTTTCATTTTCTACTTTTGATTTTTAGTAGTTTAGGCCAAAGTGTAAAGATATAATATAGATTCATTTGAATGATTTGGAATCACAATTTATATGTGCATTAGTTTTTCTTGTTTTGAAAAAGGTAGTAATGTATTATATAAGAAGCACCAAGAAAGTCAATGGTATGTAAAATTGAGCAAAATCAAGAACCTATGATGAATCCCATTTTAATCTTGTAGGATCATAGGAAACTAAGTATAACTCGACTTCGTTCATGGGTTCCTCTTTACACCAAAAAAATGAACGAAGGCGTGCTGTTGAACTTGATCTGTTGAATCGAGTTAGCTTTATCTTTGAAGTATCTAGTATTCCTTTTCCTTCCAAATGGTCCACCAAGTGCATGTTGGAATGGTATTCCATTAGATTGCCTTCCCTTTCTTCCTTCTCGTTTTGTACTACAAGCGCAGCAAATATGTTGAGTTTTTGGGCATCCAAGGACGGATTGTGTGTAGGTTATCTTATCGATTGATCTGAATCCAGTAGCTTTGCTTGAACCCTGTATATGTGTTAGAAAATCTACAAGATAAGTAAAAATAGTAGATTTTGACCCCCGTAAATTAAATGGGATGGTAGAATCTGGAACTCGAATCCAAAATGTTTAAATCCTAGATCCATCTCTATGGCCATCAACTCTCCAAGACTTTCACTATGTCAAGAAATAGATGTGAAAGCTGGCAGCCACCTTACAATGAATGAACAGATGGCTCACATTTTCCAATTCAATTGCGCAAGGTTAACACCTGCTGCTTAACTTGAACACCTTCTTTGAAGATGTTCCCTTGTAAGCTACTTTGTAAGGAGCTTGAGTTTCCAGATCCTGAATTCTAGGATGGTTGTTTTCTGTTGCAGCTTGTGTCTAAGCTCTGTAGAGGGACTGAACCATGAAGATGCCATTACTGTGAGATTTCCATATCATTCTGGCAGAATTACTGTTGGAGTTTTGCAAAGGCTCCCGTTCCAGTGCAGTAACATTGACTTGGGGGAATCCTTTTCAGTGCTTTTTCGATACTCCTTTTTGACTTATAGTTTGTTGTGGAAAAGATTTAATCTTTTTCATACTCGAATGGCATCATTGAGGAAGGAACTGGTTAGCGACTTTAAGAATGATATACATTAGTATATTTGGGAGATCGGGTCGAGTAGGTTCCCAGTTAGAGTGTTTTAAGGTTCCATCATATCAATCAATTAAGCATCAGTCCCAATTAGTTAGGGTCGCCTGTATGAATCATATATATCTATTTCGTTCTTCAGGCCCATTTTTGTCCAATACTAACTATTGTCTTTAACCAAATGAGGGGTTCTCTAAAACTAGAAGTTCGTTATTCTCTTACTTATCTGAACATAGAAATACTAGTATCTGATTAGAATAAAATGGCTCATTACAAACACCAGATGTAATGGAAGTGTAACATCAACTGTTACGATTTGGTATGACTTGCATAGAAGGTTTGCTACTGTTCTGTTTTGTTCTTAGTTAAGTCCCTATATATTTTAAGAGATTATAGGTCTCTTTGAGATAGTCTTACTCTAGGTAACTTTGGTTTGACTTGACCTTCTACCACATTCATTCATCATAGCGTCTCATTTATGGACCTGTTGTATTGAGGTTTACATAAAATATGATAGATCTTCTCAGAAAACCTTCTCTCAACTATTATATGTTTTACTTATGCTCTCTATTAGATATGACCATTTTTAATCTTGTGTTACTTCACATCAATCTAAGCATCCATTTTTCATACAACAATCATCTTTAAAGGCCCAACAATCACAATTACAATACATTATTTGTCTCTCAAGTGATCTAAAGAACTTGCCTTTTACTCAACTTAGAGAAATCCCTTTTTTTTTCTGTATTAAGTTGAAATATCTACAATGACATAAGCTATAACTAATTACAACTATGCAAACATTATCTTTCTGTAAAGAGAAGGAAAATGCACTTATTATATGCACATTTTTTTATCAGAATGCCAAAGTAGTGGTACTGTCCCATTGTACCTAATCACGATTATGCAAACTCAAAAAAATTTGGGGTCTGCAGAGTTGGTTAGTTGGGGTGGGCAGATATATATAGCCTGGGAGATTGAGGAAAATGTTAGGGATGGGAAAAGAGTAAGAAGAGCATAGACAAGAATTTGTCAAGTTCTTGGTGTGCAAGGTCGAAGGCATTAAGACACTGGATTAAGCTCTTTCCAGTTTGTGATCACGAATTTTTGGTGTAAGCTCATTATACAGAGACTGAAAGGAAACAAAAGAAAAAAACGAGGTCCCCACACAAATGCAGTTCATCACGTTGGATATTGTGAATGATTGTGAAAAACTGGTCTTTTTTGTTTCTACTTCAATTCAGAAAAGTTCTACTCCTGTTCTCGTGCACTTAACAATCCAACACGATATTTTTGAATTATCATTTCTATGATTTAGGGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCGGTAAGTTTATGATTTGGCAGTCTTGGTAATGCTGATTTTGATTTCCTAACTTACCAATATATAGTTTGGGCTTTTCTTTATAATTGTATGCAGTTAGAATTTGTTGGCAGTGCCTGCCTATCTGGCTTGACGTTTATCTTTTCTTGCAATATTAGTTCAGCATACCAATTAAATTATTTTTTGTTTATTTATTGTAGAGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTT</genome_strand>
        <mrna_strand>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCCTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG........................................................................................................................................................................................................................................ATGGCAGATTGTTATTGGATCACTTTCTCGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAGTTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG................................................................................................................GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTACGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG.....................................................................................................................................................................................................AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCATTACTTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240004" ref_strand="+" ref_description="SGN-E240004 [cLED-29-H16]">
      <seq>cattcaaacgcgtctttgggcttcaggagcctgtttctgttgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttactacaagttacgatcaaatgccgatgagacgacctgctacagttacacgagtttgtggcacatctatgcgttcttgtctattaattcatggttatggagtgctatcttccacggtcgagacatggattttacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="107353" stop="106409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107053" g_stop="107028" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106915" g_stop="106719" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="223" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106521" g_stop="106504" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="241" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E240004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107053" e_stop="107028"/>
          <exon e_start="106915" e_stop="106719"/>
          <exon e_start="106521" e_stop="106504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCGGTAAGTTTATGATTTGGCAGTCTTGGTAATGCTGATTTTGATTTCCTAACTTACCAATATATAGTTTGGGCTTTTCTTTATAATTGTATGCAGTTAGAATTTGTTGGCAGTGCCTGCCTATCTGGCTTGACGTTTATCTTTTCTTGCAATATTAGTTCAGCATACCAATTAAATTATTTTTTGTTTATTTATTGTAGAGACATGGATTTTACAGA</genome_strand>
        <mrna_strand>CATTCAAACGCGTCTTTGGGCTTCAG................................................................................................................GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG.....................................................................................................................................................................................................AGACATGGATTTTACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711059" ref_strand="+" ref_description="SGN-E711059 [FA57DD11]">
      <seq>ccctttagccataaaaattggtgaattgaagaaatatgaatccttttgctaattgataaacaaatttgagtatccttttgtgaatctaacaagatggcagattgttattggatcactttcttggtagttttattttgtcttgttggagcttttgatgctagtgctggagatgctgaccctttgtacagggcttgttttggccaatgtaaagacaccggatgtgctggagaaacatgcttcggtcattgcaatactcctttaaataattcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattctaacacaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaatgagtcttcgcccccccccccccccgcatctgatgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="110616" stop="106533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110317" g_stop="110225" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109992" g_stop="109898" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="188" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107289" g_stop="107028" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="450" r_length="262" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="0.82"/>
            <acceptor a_prob="0.890" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106915" g_stop="106833" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="534" r_length="84" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E711059" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110317" e_stop="110225"/>
          <exon e_start="109992" e_stop="109898"/>
          <exon e_start="107289" e_stop="107028"/>
          <exon e_start="106915" e_stop="106833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAGGTAATTTGCTTGTCTAACCCTTTATTTCTTCCAAATTTTCAATTTCAAATGTAAAAATCAAATCTTGGACCTTTTTTTTTTCTTCAAATCTGGGGTTTGGAGTTAAAAATAAAATCTTGGAGCCTTTTTTCTATTTGGGGTTTGGAAGATAGAAACTAGTTTATTAAATTTGTGAGATGATATGTAAGATATGAGATTAAAGATTTGATTTTTATGAATTTTGTGATATCAGATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAGGTAACATTTTCTGATAATTTTGCCTTATGGTTAATCGAGGTAATGGTAAAGTGTGCGTATACACTACCCTTCCCAGACCGCACTTGTGGGATTCCATTGGGTATTTTGTTGTTTTATCTTATGCTTAGTATTTATGAGATTTTTCATTTTCTACTTTTGATTTTTAGTAGTTTAGGCCAAAGTGTAAAGATATAATATAGATTCATTTGAATGATTTGGAATCACAATTTATATGTGCATTAGTTTTTCTTGTTTTGAAAAAGGTAGTAATGTATTATATAAGAAGCACCAAGAAAGTCAATGGTATGTAAAATTGAGCAAAATCAAGAACCTATGATGAATCCCATTTTAATCTTGTAGGATCATAGGAAACTAAGTATAACTCGACTTCGTTCATGGGTTCCTCTTTACACCAAAAAAATGAACGAAGGCGTGCTGTTGAACTTGATCTGTTGAATCGAGTTAGCTTTATCTTTGAAGTATCTAGTATTCCTTTTCCTTCCAAATGGTCCACCAAGTGCATGTTGGAATGGTATTCCATTAGATTGCCTTCCCTTTCTTCCTTCTCGTTTTGTACTACAAGCGCAGCAAATATGTTGAGTTTTTGGGCATCCAAGGACGGATTGTGTGTAGGTTATCTTATCGATTGATCTGAATCCAGTAGCTTTGCTTGAACCCTGTATATGTGTTAGAAAATCTACAAGATAAGTAAAAATAGTAGATTTTGACCCCCGTAAATTAAATGGGATGGTAGAATCTGGAACTCGAATCCAAAATGTTTAAATCCTAGATCCATCTCTATGGCCATCAACTCTCCAAGACTTTCACTATGTCAAGAAATAGATGTGAAAGCTGGCAGCCACCTTACAATGAATGAACAGATGGCTCACATTTTCCAATTCAATTGCGCAAGGTTAACACCTGCTGCTTAACTTGAACACCTTCTTTGAAGATGTTCCCTTGTAAGCTACTTTGTAAGGAGCTTGAGTTTCCAGATCCTGAATTCTAGGATGGTTGTTTTCTGTTGCAGCTTGTGTCTAAGCTCTGTAGAGGGACTGAACCATGAAGATGCCATTACTGTGAGATTTCCATATCATTCTGGCAGAATTACTGTTGGAGTTTTGCAAAGGCTCCCGTTCCAGTGCAGTAACATTGACTTGGGGGAATCCTTTTCAGTGCTTTTTCGATACTCCTTTTTGACTTATAGTTTGTTGTGGAAAAGATTTAATCTTTTTCATACTCGAATGGCATCATTGAGGAAGGAACTGGTTAGCGACTTTAAGAATGATATACATTAGTATATTTGGGAGATCGGGTCGAGTAGGTTCCCAGTTAGAGTGTTTTAAGGTTCCATCATATCAATCAATTAAGCATCAGTCCCAATTAGTTAGGGTCGCCTGTATGAATCATATATATCTATTTCGTTCTTCAGGCCCATTTTTGTCCAATACTAACTATTGTCTTTAACCAAATGAGGGGTTCTCTAAAACTAGAAGTTCGTTATTCTCTTACTTATCTGAACATAGAAATACTAGTATCTGATTAGAATAAAATGGCTCATTACAAACACCAGATGTAATGGAAGTGTAACATCAACTGTTACGATTTGGTATGACTTGCATAGAAGGTTTGCTACTGTTCTGTTTTGTTCTTAGTTAAGTCCCTATATATTTTAAGAGATTATAGGTCTCTTTGAGATAGTCTTACTCTAGGTAACTTTGGTTTGACTTGACCTTCTACCACATTCATTCATCATAGCGTCTCATTTATGGACCTGTTGTATTGAGGTTTACATAAAATATGATAGATCTTCTCAGAAAACCTTCTCTCAACTATTATATGTTTTACTTATGCTCTCTATTAGATATGACCATTTTTAATCTTGTGTTACTTCACATCAATCTAAGCATCCATTTTTCATACAACAATCATCTTTAAAGGCCCAACAATCACAATTACAATACATTATTTGTCTCTCAAGTGATCTAAAGAACTTGCCTTTTACTCAACTTAGAGAAATCCCTTTTTTTTTCTGTATTAAGTTGAAATATCTACAATGACATAAGCTATAACTAATTACAACTATGCAAACATTATCTTTCTGTAAAGAGAAGGAAAATGCACTTATTATATGCACATTTTTTTATCAGAATGCCAAAGTAGTGGTACTGTCCCATTGTACCTAATCACGATTATGCAAACTCAAAAAAATTTGGGGTCTGCAGAGTTGGTTAGTTGGGGTGGGCAGATATATATAGCCTGGGAGATTGAGGAAAATGTTAGGGATGGGAAAAGAGTAAGAAGAGCATAGACAAGAATTTGTCAAGTTCTTGGTGTGCAAGGTCGAAGGCATTAAGACACTGGATTAAGCTCTTTCCAGTTTGTGATCACGAATTTTTGGTGTAAGCTCATTATACAGAGACTGAAAGGAAACAAAAGAAAAAAACGAGGTCCCCACACAAATGCAGTTCATCACGTTGGATATTGTGAATGATTGTGAAAAACTGGTCTTTTTTGTTTCTACTTCAATTCAGAAAAGTTCTACTCCTGTTCTCGTGCACTTAACAATCCAACACGATATTTTTGAATTATCATTTCTATGATTTAGGGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGC-CTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTA</genome_strand>
        <mrna_strand>CCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG........................................................................................................................................................................................................................................ATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTTTTGGCCAATGTAAAGACACCGGATGTGCTGGAGAAACATGCTTCGGTCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCTAACACAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAATGAGTCTTCGCCCCCCCC................................................................................................................CCCCCCCGCATCTGATGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282377" ref_strand="+" ref_description="SGN-E282377 [cLER-18-M12]">
      <seq>ttttacctttctcctcacttgctttggattctcctctcctttagccataaaaattggtgaattgaagaaatatgaatccctttgctaattgataaacaaatttgagtatccttttgtgaatctaacaagatggcagattgttattggatcactttctcggtagttttattttgtcttgttggagcttttgatgctagtgctggagatgctgaccctttgtacagggcttgttttggccaatgtaaagagaccggatgtgctggagaaacatgcttcggccattgcaatactcctttaaatagttcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattcaaagagaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaacgcgtctttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="110653" stop="106732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110353" g_stop="110225" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109992" g_stop="109898" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107289" g_stop="107032" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="482" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E282377" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110353" e_stop="110225"/>
          <exon e_start="109992" e_stop="109898"/>
          <exon e_start="107289" e_stop="107032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAGGTAATTTGCTTGTCTAACCCTTTATTTCTTCCAAATTTTCAATTTCAAATGTAAAAATCAAATCTTGGACCTTTTTTTTTTCTTCAAATCTGGGGTTTGGAGTTAAAAATAAAATCTTGGAGCCTTTTTTCTATTTGGGGTTTGGAAGATAGAAACTAGTTTATTAAATTTGTGAGATGATATGTAAGATATGAGATTAAAGATTTGATTTTTATGAATTTTGTGATATCAGATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAGGTAACATTTTCTGATAATTTTGCCTTATGGTTAATCGAGGTAATGGTAAAGTGTGCGTATACACTACCCTTCCCAGACCGCACTTGTGGGATTCCATTGGGTATTTTGTTGTTTTATCTTATGCTTAGTATTTATGAGATTTTTCATTTTCTACTTTTGATTTTTAGTAGTTTAGGCCAAAGTGTAAAGATATAATATAGATTCATTTGAATGATTTGGAATCACAATTTATATGTGCATTAGTTTTTCTTGTTTTGAAAAAGGTAGTAATGTATTATATAAGAAGCACCAAGAAAGTCAATGGTATGTAAAATTGAGCAAAATCAAGAACCTATGATGAATCCCATTTTAATCTTGTAGGATCATAGGAAACTAAGTATAACTCGACTTCGTTCATGGGTTCCTCTTTACACCAAAAAAATGAACGAAGGCGTGCTGTTGAACTTGATCTGTTGAATCGAGTTAGCTTTATCTTTGAAGTATCTAGTATTCCTTTTCCTTCCAAATGGTCCACCAAGTGCATGTTGGAATGGTATTCCATTAGATTGCCTTCCCTTTCTTCCTTCTCGTTTTGTACTACAAGCGCAGCAAATATGTTGAGTTTTTGGGCATCCAAGGACGGATTGTGTGTAGGTTATCTTATCGATTGATCTGAATCCAGTAGCTTTGCTTGAACCCTGTATATGTGTTAGAAAATCTACAAGATAAGTAAAAATAGTAGATTTTGACCCCCGTAAATTAAATGGGATGGTAGAATCTGGAACTCGAATCCAAAATGTTTAAATCCTAGATCCATCTCTATGGCCATCAACTCTCCAAGACTTTCACTATGTCAAGAAATAGATGTGAAAGCTGGCAGCCACCTTACAATGAATGAACAGATGGCTCACATTTTCCAATTCAATTGCGCAAGGTTAACACCTGCTGCTTAACTTGAACACCTTCTTTGAAGATGTTCCCTTGTAAGCTACTTTGTAAGGAGCTTGAGTTTCCAGATCCTGAATTCTAGGATGGTTGTTTTCTGTTGCAGCTTGTGTCTAAGCTCTGTAGAGGGACTGAACCATGAAGATGCCATTACTGTGAGATTTCCATATCATTCTGGCAGAATTACTGTTGGAGTTTTGCAAAGGCTCCCGTTCCAGTGCAGTAACATTGACTTGGGGGAATCCTTTTCAGTGCTTTTTCGATACTCCTTTTTGACTTATAGTTTGTTGTGGAAAAGATTTAATCTTTTTCATACTCGAATGGCATCATTGAGGAAGGAACTGGTTAGCGACTTTAAGAATGATATACATTAGTATATTTGGGAGATCGGGTCGAGTAGGTTCCCAGTTAGAGTGTTTTAAGGTTCCATCATATCAATCAATTAAGCATCAGTCCCAATTAGTTAGGGTCGCCTGTATGAATCATATATATCTATTTCGTTCTTCAGGCCCATTTTTGTCCAATACTAACTATTGTCTTTAACCAAATGAGGGGTTCTCTAAAACTAGAAGTTCGTTATTCTCTTACTTATCTGAACATAGAAATACTAGTATCTGATTAGAATAAAATGGCTCATTACAAACACCAGATGTAATGGAAGTGTAACATCAACTGTTACGATTTGGTATGACTTGCATAGAAGGTTTGCTACTGTTCTGTTTTGTTCTTAGTTAAGTCCCTATATATTTTAAGAGATTATAGGTCTCTTTGAGATAGTCTTACTCTAGGTAACTTTGGTTTGACTTGACCTTCTACCACATTCATTCATCATAGCGTCTCATTTATGGACCTGTTGTATTGAGGTTTACATAAAATATGATAGATCTTCTCAGAAAACCTTCTCTCAACTATTATATGTTTTACTTATGCTCTCTATTAGATATGACCATTTTTAATCTTGTGTTACTTCACATCAATCTAAGCATCCATTTTTCATACAACAATCATCTTTAAAGGCCCAACAATCACAATTACAATACATTATTTGTCTCTCAAGTGATCTAAAGAACTTGCCTTTTACTCAACTTAGAGAAATCCCTTTTTTTTTCTGTATTAAGTTGAAATATCTACAATGACATAAGCTATAACTAATTACAACTATGCAAACATTATCTTTCTGTAAAGAGAAGGAAAATGCACTTATTATATGCACATTTTTTTATCAGAATGCCAAAGTAGTGGTACTGTCCCATTGTACCTAATCACGATTATGCAAACTCAAAAAAATTTGGGGTCTGCAGAGTTGGTTAGTTGGGGTGGGCAGATATATATAGCCTGGGAGATTGAGGAAAATGTTAGGGATGGGAAAAGAGTAAGAAGAGCATAGACAAGAATTTGTCAAGTTCTTGGTGTGCAAGGTCGAAGGCATTAAGACACTGGATTAAGCTCTTTCCAGTTTGTGATCACGAATTTTTGGTGTAAGCTCATTATACAGAGACTGAAAGGAAACAAAAGAAAAAAACGAGGTCCCCACACAAATGCAGTTCATCACGTTGGATATTGTGAATGATTGTGAAAAACTGGTCTTTTTTGTTTCTACTTCAATTCAGAAAAGTTCTACTCCTGTTCTCGTGCACTTAACAATCCAACACGATATTTTTGAATTATCATTTCTATGATTTAGGGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCT</genome_strand>
        <mrna_strand>TTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCCTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG........................................................................................................................................................................................................................................ATGGCAGATTGTTATTGGATCACTTTCTCGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAGTTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351455" ref_strand="+" ref_description="SGN-E351455 [cTOS-12-F18]">
      <seq>tacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaatcgagtttgttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115294" stop="113346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114994" g_stop="114926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="94" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113643" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="614" r_length="520" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E351455" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114994" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTTTGTTCACTT</genome_strand>
        <mrna_strand>TACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTTTGTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354299" ref_strand="+" ref_description="SGN-E354299 [cTOS-16-F22]">
      <seq>ttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgctcggagatgagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaatcgagtttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115383" stop="113347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115083" g_stop="114926" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="183" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113647" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="698" r_length="515" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354299" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115083" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTTTGTTC</genome_strand>
        <mrna_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGCTCGGAGATG-AGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354456" ref_strand="+" ref_description="SGN-E354456 [cTOS-17-B6]">
      <seq>ttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgtttttcacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttaatgaatcgagtttggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115383" stop="113346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115083" g_stop="114926" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="183" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113651" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="695" r_length="512" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354456" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115083" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTTT</genome_strand>
        <mrna_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTTCACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTAATGAATCGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353300" ref_strand="+" ref_description="SGN-E353300 [cTOS-15-C9]">
      <seq>atgaacgataattcaatctactaaaatatctatcacttatttttatttttattttgttttcgctagagtttgaacttgattttttttaattttattttaatatatggtttgtttgattttttttttattattattattatatagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatgggcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaaatggtattgtaatctttctttttttaacgagactataataataacttatttattgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="114606" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114306" g_stop="113652" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E353300" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114306" e_stop="113652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTT</genome_strand>
        <mrna_strand>ATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGGCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAATGGTATTGTAATCTTTCTTTTTT-TAACGAGACTATAATAATAACTTATTTATTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357868" ref_strand="+" ref_description="SGN-E357868 [cTOS-24-B23]">
      <seq>ttatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115388" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115088" g_stop="114926" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="188" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113654" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="697" r_length="509" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E357868" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115088" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAG</genome_strand>
        <mrna_strand>TTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349948" ref_strand="+" ref_description="SGN-E349948 [cTOS-3-J8]">
      <seq>tctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgtattgtaatccttcttttttataacgagactataataataactatttaatgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115269" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114969" g_stop="114926" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="69" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113654" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="576" r_length="507" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E349948" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114969" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAG</genome_strand>
        <mrna_strand>TCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTG-TATTGTAATCCTTCTTTTTTATAACGAGACTATAATAATAAC-TATTTAATGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724715" ref_strand="+" ref_description="SGN-E724715 [FC24DH03]">
      <seq>ggcggccaaatcggccgaattcccttggggatccgccatttaattccatttatcttctcttcttcttaaatattttaccttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115406" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115094" g_stop="114926" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="212" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="237" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113655" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="745" r_length="508" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E724715" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115094" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGA</genome_strand>
        <mrna_strand>TTCCATTTATCTTCTCTTCTTCTTAAATATTTTACCTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356227" ref_strand="+" ref_description="SGN-E356227 [cTOS-20-P17]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113656" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="685" r_length="507" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E356227" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCG</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353785" ref_strand="+" ref_description="SGN-E353785 [cTOS-10-C15]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113656" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="685" r_length="507" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E353785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCG</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351215" ref_strand="+" ref_description="SGN-E351215 [cTOS-6-I24]">
      <seq>tcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaaagtgtattgtaatctttcttttttataacgagactataataataacttatttattgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115380" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115080" g_stop="114926" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="180" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113657" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="686" r_length="506" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E351215" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115080" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATC</genome_strand>
        <mrna_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAAGTGTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357386" ref_strand="+" ref_description="SGN-E357386 [cTOS-23-N1]">
      <seq>tacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115294" stop="113357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114994" g_stop="114926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="94" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113657" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="600" r_length="506" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E357386" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114994" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATC</genome_strand>
        <mrna_strand>TACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349749" ref_strand="+" ref_description="SGN-E349749 [cTOS-3-A16]">
      <seq>tagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115286" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114986" g_stop="114926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="86" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113657" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="592" r_length="506" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E349749" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114986" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATC</genome_strand>
        <mrna_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352329" ref_strand="+" ref_description="SGN-E352329 [cTOS-9-C20]">
      <seq>ttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgntttcaacttgctcggagatgagagttattgtaatctttcttttttataacgagactataataataacttatttattgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115383" stop="113358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115083" g_stop="114926" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="183" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113658" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="687" r_length="504" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E352329" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115083" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAT</genome_strand>
        <mrna_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGNTTTCAACTTGCTCGGAGATG-AGAGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356311" ref_strand="+" ref_description="SGN-E356311 [cTOS-20-O15]">
      <seq>tacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115294" stop="113358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114994" g_stop="114926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="94" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113658" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="599" r_length="505" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E356311" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114994" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAT</genome_strand>
        <mrna_strand>TACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350205" ref_strand="+" ref_description="SGN-E350205 [cTOS-4-K24]">
      <seq>tcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115380" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115080" g_stop="114926" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="180" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113659" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="684" r_length="504" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350205" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115080" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAA</genome_strand>
        <mrna_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721739" ref_strand="+" ref_description="SGN-E721739 [FC15AD12]">
      <seq>gggcgattggcggccaatcggccgaattgatcaaatatttccattcatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115411" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115103" g_stop="114926" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="207" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="232" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="735" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="768"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E721739" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115103" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATATTTCCATTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>ATCAAATATTTCCATTCATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711773" ref_strand="+" ref_description="SGN-E711773 [FB02DG09]">
      <seq>agccttatacttaaatattttattttccttcaaactatatagtactttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115379" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115082" g_stop="114926" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="182" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="685" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="696"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E711773" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115082" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>AGCCTTATACTTAAATATTTTATTTTCCTTCAAACTATATAGTACTTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355358" ref_strand="+" ref_description="SGN-E355358 [cTOS-18-N22]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="681" r_length="503" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="693"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E355358" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335379" ref_strand="+" ref_description="SGN-E335379 [cTOE-2-O1]">
      <seq>gtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgntttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115341" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115041" g_stop="114926" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="141" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="644" r_length="503" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E335379" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115041" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>GTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGNTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335092" ref_strand="+" ref_description="SGN-E335092 [cTOE-1-G11]">
      <seq>gtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115341" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115041" g_stop="114926" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="141" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="644" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E335092" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115041" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>GTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354452" ref_strand="+" ref_description="SGN-E354452 [cTOS-17-P17]">
      <seq>taatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115340" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115040" g_stop="114926" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="140" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="643" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="654"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354452" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115040" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337227" ref_strand="+" ref_description="SGN-E337227 [cTOE-7-O7]">
      <seq>tttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagcccgtttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115337" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115037" g_stop="114926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="137" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="640" r_length="503" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E337227" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115037" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCCGTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354878" ref_strand="+" ref_description="SGN-E354878 [cTOS-19-H22]">
      <seq>ttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115336" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115036" g_stop="114926" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="136" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="639" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="649"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354878" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115036" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335478" ref_strand="+" ref_description="SGN-E335478 [cTOE-2-I13]">
      <seq>tttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttattttttgnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115331" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115031" g_stop="114926" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="131" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="634" r_length="503" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E335478" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115031" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTTTTGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352507" ref_strand="-" ref_description="SGN-E352507 [cTOS-9-E12]">
      <seq>gttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115296" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114996" g_stop="114926" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="96" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="599" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="618"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E352507" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352507" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114996" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>GTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354401" ref_strand="+" ref_description="SGN-E354401 [cTOS-17-I10]">
      <seq>tagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115286" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114986" g_stop="114926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="86" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="589" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354401" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114986" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357499" ref_strand="+" ref_description="SGN-E357499 [cTOS-23-I12]">
      <seq>tagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115286" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114986" g_stop="114926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="86" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="589" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="602"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E357499" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114986" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352297" ref_strand="+" ref_description="SGN-E352297 [cTOS-9-G17]">
      <seq>gcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115284" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114984" g_stop="114926" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="84" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113660" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="587" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E352297" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114984" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>GCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336468" ref_strand="-" ref_description="SGN-E336468 [cTOE-4-D17]">
      <seq>aaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="114392" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114092" g_stop="113660" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="450"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E336468" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336468" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114092" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>AAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356331" ref_strand="+" ref_description="SGN-E356331 [cTOS-20-G6]">
      <seq>tttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttggggtatcatggtgtctgaactgagttgtaatactggagcgatatatgatctatggattaagaatcatataaccggtttccacttgctccgaaaagaaatggtattggaatccttcttttttataaccaaactataataataacttatttattggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="114374" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114074" g_stop="113660" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E356331" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114074" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGGGGTATCATGGTGTCTGAACTGAGTTGTAATACTGGAGCGATATATGATCTATGGATTAAGAATCATATAACCGGTTTCCACTTGCTCCGAAAAGAAATGGTATTGGAATCCTTCTTTTTTATAACCAAACTATAATAATAACTTATTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350819" ref_strand="+" ref_description="SGN-E350819 [cTOS-7-E1]">
      <seq>tttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="114374" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114074" g_stop="113660" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350819" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114074" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>TTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744767" ref_strand="+" ref_description="SGN-E744767 [GI|6491761]">
      <seq>attgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="114191" stop="113359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113891" g_stop="113660" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="233" polyA_stop="244"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E744767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113891" e_stop="113660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</genome_strand>
        <mrna_strand>ATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744474" ref_strand="+" ref_description="SGN-E744474 [GI|405584]">
      <seq>tttttttttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115365" stop="113361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115065" g_stop="114926" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="165" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113661" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="667" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E744474" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115065" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTG</genome_strand>
        <mrna_strand>TTTTTTTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349980" ref_strand="+" ref_description="SGN-E349980 [cTOS-4-G23]">
      <seq>ttttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115365" stop="113361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115065" g_stop="114926" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="165" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113661" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="667" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E349980" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115065" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTG</genome_strand>
        <mrna_strand>TTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354642" ref_strand="+" ref_description="SGN-E354642 [cTOS-17-H10]">
      <seq>tagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115286" stop="113361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114986" g_stop="114926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="86" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113661" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="588" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354642" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114986" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTG</genome_strand>
        <mrna_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355368" ref_strand="+" ref_description="SGN-E355368 [cTOS-25-C15]">
      <seq>ttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115383" stop="113362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115083" g_stop="114926" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="183" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113662" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="684" r_length="501" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E355368" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115083" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATT</genome_strand>
        <mrna_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356894" ref_strand="+" ref_description="SGN-E356894 [cTOS-22-M16]">
      <seq>tcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115380" stop="113364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115080" g_stop="114926" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="180" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113664" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="679" r_length="499" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E356894" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115080" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTA</genome_strand>
        <mrna_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341291" ref_strand="+" ref_description="SGN-E341291 [cTOE-22-J3]">
      <seq>taatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115340" stop="113364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115040" g_stop="114926" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="140" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113664" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="639" r_length="499" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E341291" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115040" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTA</genome_strand>
        <mrna_strand>TAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723793" ref_strand="+" ref_description="SGN-E723793 [FC21DH03]">
      <seq>gcggccaatcggccgaattgatcaaatatttccccttatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaaaaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115411" stop="113366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115103" g_stop="114926" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="198" r_length="178" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="223" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113666" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="720" r_length="497" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E723793" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115103" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATATTTCCATTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATT</genome_strand>
        <mrna_strand>ATCAAATATTTCCCCTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAAAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357739" ref_strand="+" ref_description="SGN-E357739 [cTOS-24-D24]">
      <seq>ttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115383" stop="113366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115083" g_stop="114926" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="183" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113666" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="680" r_length="497" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E357739" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115083" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATT</genome_strand>
        <mrna_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356175" ref_strand="+" ref_description="SGN-E356175 [cTOS-20-I10]">
      <seq>tagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataataataacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115286" stop="113366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114986" g_stop="114926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="86" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113666" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="583" r_length="497" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E356175" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114986" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATT</genome_strand>
        <mrna_strand>TAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353261" ref_strand="+" ref_description="SGN-E353261 [cTOS-14-H22]">
      <seq>ttttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgntattgtaatctttctttttataacgagactataataataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115365" stop="113370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115065" g_stop="114926" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="165" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113670" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="657" r_length="492" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E353261" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115065" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACT</genome_strand>
        <mrna_strand>TTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGNTATTGTAATCTTTC-TTTTTATAACGAGACTATAATAATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357864" ref_strand="-" ref_description="SGN-E357864 [cTOS-24-B5]">
      <seq>caaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgaagtgttattgtaatctttcttttttataacgagactataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115352" stop="113378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115052" g_stop="114926" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="152" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113678" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="637" r_length="485" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E357864" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357864" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115052" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAA</genome_strand>
        <mrna_strand>CAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349436" ref_strand="+" ref_description="SGN-E349436 [cTOS-1-D10]">
      <seq>aactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgctcggagatgaagtgttattggaatccttcttttttattacgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115350" stop="113381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115050" g_stop="114926" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="150" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113681" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="632" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E349436" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115050" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTA</genome_strand>
        <mrna_strand>AACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGGAATCCTTCTTTTTTATTACGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349939" ref_strand="+" ref_description="SGN-E349939 [cTOS-3-D2]">
      <seq>tcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtattttgatgtaatgttttagcattnntgtattctctacttgtgttatcatgntgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaactttgctcgagatgaagtgttattgnaatctttccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115385" stop="113394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115085" g_stop="114926" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="185" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113693" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="653" r_length="468" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E349939" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115085" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATT-TTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAAC-TTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTT</genome_strand>
        <mrna_strand>TCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGT-ATTTTGATGTAATGTTTT-AGCATTNNTGTA-TTCTCTACTTGTGTTATCATGNTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTTGCTC-GAGATGAAGTGTTATTGNAATCTTTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350896" ref_strand="+" ref_description="SGN-E350896 [cTOS-7-B17]">
      <seq>ttatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatgggcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgctcggagatgagtgttattgtaatctttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115388" stop="113394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115088" g_stop="114926" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="188" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113694" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="656" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350896" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115088" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTT</genome_strand>
        <mrna_strand>TTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGGCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATG-AGTGTTATTGTAATCTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354607" ref_strand="+" ref_description="SGN-E354607 [cTOS-17-J1]">
      <seq>tcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgtttttcacttgctcggagatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115380" stop="113417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115080" g_stop="114926" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="180" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113717" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="626" r_length="446" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354607" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115080" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAA</genome_strand>
        <mrna_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTTCACTTGCTCGGAGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308346" ref_strand="+" ref_description="SGN-E308346 [cLEY-25-G13]">
      <seq>ctcgtgccgaattcggcacgaggatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccggtttcaacttgctcggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115338" stop="113419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115040" g_stop="114926" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="136" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="161" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113719" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="605" r_length="444" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E308346" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115040" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATG</genome_strand>
        <mrna_strand>GGATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGGTTTCAACTTGCTCGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350272" ref_strand="+" ref_description="SGN-E350272 [cTOS-4-D10]">
      <seq>tcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatggtttaagcattttgtatttctctacttggggtatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagcccgtttcaacttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115380" stop="113426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115080" g_stop="114926" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="180" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113726" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="617" r_length="437" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350272" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115080" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTC</genome_strand>
        <mrna_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGGTTTAAGCATTTTGTATTTCTCTACTTGGGGTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCCGTTTCAACTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350695" ref_strand="+" ref_description="SGN-E350695 [cTOS-7-G22]">
      <seq>ttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatgggcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgctttcaacttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115354" stop="113426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115054" g_stop="114926" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="154" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113726" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="591" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350695" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115054" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTC</genome_strand>
        <mrna_strand>TTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGGCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGCTTTCAACTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350927" ref_strand="+" ref_description="SGN-E350927 [cTOS-7-P15]">
      <seq>ttctcttcttcttaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115383" stop="113427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115083" g_stop="114926" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="182" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113727" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="618" r_length="436" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350927" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115083" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCT</genome_strand>
        <mrna_strand>TTCTCTTCTTCTT-AATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352532" ref_strand="+" ref_description="SGN-E352532 [cTOS-9-O16]">
      <seq>tcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattaggattcatatagccgttttcaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115380" stop="113427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115080" g_stop="114926" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="180" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113727" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="616" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E352532" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115080" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCT</genome_strand>
        <mrna_strand>TCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354220" ref_strand="+" ref_description="SGN-E354220 [cTOS-16-E14]">
      <seq>ttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgttttcaacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115383" stop="113428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115083" g_stop="114926" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="183" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113728" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="618" r_length="435" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354220" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115083" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGC</genome_strand>
        <mrna_strand>TTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTCAACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355178" ref_strand="+" ref_description="SGN-E355178 [cTOS-18-F15]">
      <seq>ctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgtattangattcatatagccgtttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115381" stop="113434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115081" g_stop="114926" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="181" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113732" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="612" r_length="431" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E355178" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115081" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAAC</genome_strand>
        <mrna_strand>CTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTANGATTCATATAGCCGTTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354883" ref_strand="+" ref_description="SGN-E354883 [cTOS-19-J20]">
      <seq>ttttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115365" stop="113459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115065" g_stop="114926" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="165" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113759" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="569" r_length="404" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354883" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115065" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGT</genome_strand>
        <mrna_strand>TTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354225" ref_strand="+" ref_description="SGN-E354225 [cTOS-16-G14]">
      <seq>tttatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgngttatcatggtgtctgagctgagttgtagtactggagcgatatatgatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115389" stop="113461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115089" g_stop="114926" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="189" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113761" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="591" r_length="402" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354225" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115089" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTAT</genome_strand>
        <mrna_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGNGTTATCATGGTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354027" ref_strand="+" ref_description="SGN-E354027 [cTOS-16-O13]">
      <seq>tttatcttctcttcttcttaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcatgttgtctgagctgagttgtagtactggagcgatatatgatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115389" stop="113461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115089" g_stop="114926" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="188" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113761" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="590" r_length="402" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354027" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115089" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTAT</genome_strand>
        <mrna_strand>TTTATCTTCTCTTCTTCTT-AATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338662" ref_strand="+" ref_description="SGN-E338662 [cTOE-15-D10]">
      <seq>ttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgtatttctctacttgtgttatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115375" stop="113505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115075" g_stop="114926" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="175" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113805" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="533" r_length="358" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E338662" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115075" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCAT</genome_strand>
        <mrna_strand>TTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354343" ref_strand="+" ref_description="SGN-E354343 [cTOS-17-E3]">
      <seq>tggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatgggcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatggtttaagcattttggatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115298" stop="113521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114998" g_stop="114926" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="98" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113821" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="440" r_length="342" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354343" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114998" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCT</genome_strand>
        <mrna_strand>TGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGGCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGGTTTAAGCATTTTGGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354006" ref_strand="+" ref_description="SGN-E354006 [cTOS-16-G11]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggncatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113827" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="514" r_length="336" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354006" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGT</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGNCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341044" ref_strand="+" ref_description="SGN-E341044 [cTOE-22-E7]">
      <seq>tttcactttccatttgaagagaagaataatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattgtgttttgtattgcattaaattgatttggagtaattttgatgtaatgttttaagcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115337" stop="113529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115037" g_stop="114926" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="137" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113829" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="471" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E341044" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115037" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTT</genome_strand>
        <mrna_strand>TTTCACTTTCCATTTGAAGAGAAGAATAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354803" ref_strand="+" ref_description="SGN-E354803 [cTOS-19-G12]">
      <seq>tttatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcctgcccttgttacaacaattggaaaactcaagaaaggaaaacttaatggccctaattaattaaaatattaataattagggaaatttatcttttttttcccaaaatttatgggaaaaaattaagagtactatagctatatgggcatattggggttttgtattgcataaaattgatttggagtaattttgatgtaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115389" stop="113539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115089" g_stop="114926" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="189" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113839" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="515" r_length="326" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E354803" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115089" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATC-TTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATT-GTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTT</genome_strand>
        <mrna_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCCTGCCCTTGTTACAACAATTGGAAAACTCAAGAAAGGAAAACTTAATGGCCCTAATTAATTAAAATATTAATAATTAGGGAAATTTATCTTTTTTTTCCCAAAATTTATGGGAAAAAATTAAGAGTACTATAGCTATATGGGCATATTGGGGTTTTGTATTGCATAAAATTGATTTGGAGTAATTTTGATGTAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350721" ref_strand="+" ref_description="SGN-E350721 [cTOS-7-B1]">
      <seq>tttatcttctcttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatgggaaagattaagagtactatagctatatggtcatattgtgttttggtatgcattaaattgatttggagtaattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115389" stop="113548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115089" g_stop="114926" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="189" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113848" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="504" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350721" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115089" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGAT</genome_strand>
        <mrna_strand>TTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGGAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGGTATGCATTAAATTGATTTGGAGTAATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274454" ref_strand="+" ref_description="SGN-E274454 [cLEN-19-I10]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattatgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagaatactatagctatatggtcatatttgtgttttgcattgcattaaattgatttggagtaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113852" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="490" r_length="312" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E274454" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATA-TTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTT</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTATGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAATACTATAGCTATATGGTCATATTTGTGTTTTGCATTGCATTAAATTGATTTGGAGTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350299" ref_strand="+" ref_description="SGN-E350299 [cTOS-4-P12]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctanatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagattaagagtactatagctatatggtcatattggggttttgtattgcattaaattgatttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113858" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="484" r_length="306" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E350299" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATT-GTGTTTTGTATTGCATTAAATTGATTTGGAG</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTANATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGGGGTTTTGTATTGCATTAAATTGATTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341156" ref_strand="+" ref_description="SGN-E341156 [cTOE-22-F6]">
      <seq>ttcttaaatattttattttccttgggactatatagtaatttcactgtccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagttgatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaaaaattaatggaaaagattaagagtaccatagctatatggtcatattgtgttgtgtattgcattaaattgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115375" stop="113559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115075" g_stop="114926" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="175" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113859" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="479" r_length="304" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E341156" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115075" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGA</genome_strand>
        <mrna_strand>TTCTTAAATATTTTATTTTCCTTGGGACTATATAGTAATTTCACTGTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTGATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAAAAATTAATGGAAAAGATTAAGAGTACCATAGCTATATGGTCATATTGTGTTGTGTATTGCATTAAATTGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336121" ref_strand="+" ref_description="SGN-E336121 [cTOE-12-C23]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgtccaacagattgcaagccaagatgtacttatagatgctcagcaacattacacaagaagccttgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaagatttagagtactatagctatatggtcatattgtgttttgtattgcattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113870" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="471" r_length="293" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E336121" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAA</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGTCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATTACACAAGAAGCCTTGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTTAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352404" ref_strand="+" ref_description="SGN-E352404 [cTOS-9-N21]">
      <seq>ttcttcttaaatattttattttccttcaaactatatagtaatttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaatgttgtgcaacatgtttatgtgttcctaaaggagtttatggcaacaaacaatcatgcccttgttacaacaattggaagactcaagaaggaaaacctaaatgcccttaattaattaaaatattaataattagggaaattaatctttttttcccaataattaatggaaaaaattaagagtactatagctatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115378" stop="113597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115078" g_stop="114926" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114732" g_stop="114708" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="178" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114162" g_stop="113897" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="444" r_length="266" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E352404" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115078" e_stop="114926"/>
          <exon e_start="114732" e_stop="114708"/>
          <exon e_start="114162" e_stop="113897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATG</genome_strand>
        <mrna_strand>TTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG.................................................................................................................................................................................................GGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAATTAAAATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAAATTAAGAGTACTATAGCTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341036" ref_strand="+" ref_description="SGN-E341036 [cTOE-22-A21]">
      <seq>tttcactttccatttgaagagaagaaaaatggcaaagagtggttacaatgctagcttcttgttacttatctcaatgttcttgattttgctcactttctctaacgtggtcgaggtaaatacgtttaacatttgacgtataaatgtaatttcgaatttatatgcaccttatttttctatacaatatgattaactgattactcttcgatctatgtgactacaccattaatctcaattaattattacataaaaatataatgtacctttttttttttggaatttatgtgtctttttcttcatttttacagggttacaacaagctccgcccaacagattgcaagccaagatgtacttatagatgctcagcaacatcacacaagaagccatgtatgttcttttgtcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="115337" stop="113788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115037" g_stop="114708" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114162" g_stop="114088" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="405" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E341036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115037" e_stop="114708"/>
          <exon e_start="114162" e_stop="114088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAGGTATATATATATATATTTACTCTCATTTTTAAAATTTTATCATTTTTCTTAATTTTTAATGTATGAGAAATTTTTGTGTAGTGTATATGTTTCGATATATATGAGTTAGTTTAACTAGTTTACAAGTATTTTTCTTAGAAAAATATGATAAGTTTATTTAACATTATAATTTAAAAGTCAACTTAAGTTTGTCCTTTTTCTTGTGAAAATACTTCTAAATTTTTATTTTTCAAATATAATTTTTAAGGATAACATTTTAGTCATTTTAATAAATAATAATAATAAAATCGTTACACCGGCTTATTATTTATTTCAACTTTCAAACACAAAATGTTTATCAACTATTTTTAGTTATAAAAAAATAACAAGAATCTTGTGTTTTTGACCTTTTTTACCTAGGGATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAAT</genome_strand>
        <mrna_strand>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539372" ref_strand="+" ref_description="SGN-E539372 [TUS-59-B15](-)">
      <seq>ctgaacttgatccattgaaggtgaccttgaacagtctcagacttaagagcgagaaggcattggtcagtggggataatgctgctcatcaagcgtccttgaaggaagtgcagaagtactgcaagattctacttggacgtttatcccatggtaatggatgcatgaaggctttctttgttatcggtctaacaatggctgtgggtgttgcttttgtctccaaggagtccccggaggtcaagaaactgttggcagatcgcttcaatgacttgcagtccctggacttcaagaaactgttgacagatctctccaacgacgtgcagtccctggatttcaagaaactgttgtcagatttcaacttggcttgaaacttccccttctcacatagagggttgtaagttaaatcacacctacctttgttatatgtttaaattatgtcccggcacagagaagctagcacaccccagaacaaaaatgggtagagaatgagttgttttagaaaggaaaaaaaaaaaaataggtacagcagatatgatgccaagtttctggcctcagtttacagtgtttgtgtttgtttagtttttttatggaacagaactatttaagtaatcgaatttcgtttggctgaactatgtttggtttttcaagccattttcatttgataagaaatggtttgtaactttatatatgtagtatatggaaggaattgtaagatatgattatggtggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="121411" stop="119598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121111" g_stop="121065" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121064" i_stop="120579" i_length="486">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120578" g_stop="119894" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="731" r_length="684" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E539372" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121111" e_stop="121065"/>
          <exon e_start="120578" e_stop="119894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAGGTATGTTAATCTTTCTGAGTTGAAAATACCAGAATGATATCTATTGAACAAAAGATGAAGTCTATCAAATTTTACAAGTTATTTGGTTACTCTTGTTATAGGTCTGTTTCAGTTGAAAAGGTAATTATAGTTTCATGCTCACTTTTGGGATTTTGTTTTTGGTGGGGCGAGGGCATTGGCATTGGCATTAGAAAAAGAGTCCACAAGGCCAGACATCATTGTTCTTTTTGCCACGCTTACAGCGATATTGTATTATTTCTGTGTTTATCTTTCAGCACTAATTGGCATGCCTTAAGAGATGTAAGGTGTCTTTGGCATGAAATATGACACATGAGATTCCACATATTAATTTTTTTGGATTAGTCAAAAATCATAAACAACGAAGGATAGTATGGCCCTCTCAAGAAAGGAAACAAGTAGTTTAATGGACATCATATAGCCGATGTTAATTTCATCTGATACTTTTTTTTCTTTATGATACTGTAGAGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTTTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCTCCAAGGAGTCCCCGGAGGTCAAGAAACTGTTGGCAGATCGCTTCAATGACTTGCAGTCCCTGGACTTCAAGAAACTGTTGACAGATCTCTCCAACGACGTGCAGTCCCTGGATTTCAAGAAACTGTTGTCAGATTTCAACTTGGCTTGAAACTTCCCCTTCTCACATAGAGGGTTGTAAGTTAAATCACACCTACCTTTGTTATATGTTTAAATTATGTCCCGGCACAGAGAAGCTAGCACACCCCAGAACAAAAATGGGTAGAGAATGAGTTGTTTTAGAAAGGAAAAAAAAATAAAATAGGTACAGCAGATATGATGCCAAGTTTCTGGCCTCAGTTTACAGTGTTTGTGTTTGTTTAGTTTTTTTATGAAACAGAACTATTTAAGTAATCGAATTTCGTTTGGCTGAACTATGTTTGGTTTTTCAAGCCATTTTCATTTGATAAGAAATGGTTTGTAACTTTATATATGTAGTATATGGAAGGAATTGTAAGATATGATTATGGTTGGAATAGCTT</genome_strand>
        <mrna_strand>CTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTCTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCTCCAAGGAGTCCCCGGAGGTCAAGAAACTGTTGGCAGATCGCTTCAATGACTTGCAGTCCCTGGACTTCAAGAAACTGTTGACAGATCTCTCCAACGACGTGCAGTCCCTGGATTTCAAGAAACTGTTGTCAGATTTCAACTTGGCTTGAAACTTCCCCTTCTCACATAGAGGGTTGTAAGTTAAATCACACCTACCTTTGTTATATGTTTAAATTATGTCCCGGCACAGAGAAGCTAGCACACCCCAGAACAAAAATGGGTAGAGAATGAGTTGTTTTAGAAAGGAAAAAAAAA-AAAATAGGTACAGCAGATATGATGCCAAGTTTCTGGCCTCAGTTTACAGTGTTTGTGTTTGTTTAGTTTTTTTATGGAACAGAACTATTTAAGTAATCGAATTTCGTTTGGCTGAACTATGTTTGGTTTTTCAAGCCATTTTCATTTGATAAGAAATGGTTTGTAACTTTATATATGTAGTATATGGAAGGAATTGTAAGATATGATTATGGTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548210" ref_strand="+" ref_description="SGN-E548210 [TUS-59-B15]">
      <seq>ggagaacgtgttgtgcctccatcagctcttgaggttttgatgaggatcaccttcccagcaccttctgctcgaattaaggccactgaaaggtttgaagcggtctatcctacactgaaagaggtagctcttgttgctgcccctgggagcaaagcaatgaagcagctaacccagcggatactgccttttgctatcaaagctgtaggggaaggtgttcctgatctatcaaaggaggctactgagctatctatttggtgtttgactcagaaccccgactgttacaagctgtgggacaatatttatctggacaatgtagaagcaagtctaataataattaagaagctgtccacagagttcaaggcgcattctgttaagggacctgaacttgatccattgaaggtgaccttgaacagtctcagacttaagagcgagaaggcattggtcagtggggataatgctgctcatcaagcgtccttgaaggaagtgcagaagtactgcaagattctacttggacgtttatcccatggtaatggatgcatgaaggctttctttgttatcggtctaacaatggctgtgggtgttgcttttgtctccaaggagtccccggaggtcaagaaactgttggcagatcgcttcaatgacttgcagtccctggacttcaagaaactgttgacagatctctccaacgacgtgcagtccctggatttcaagaaactgttgtcagatttcaacttggcttgaaacttccccttctcacatagaggggtgtaagttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="122097" stop="119929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121797" g_stop="121720" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121719" i_stop="121615" i_length="105">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121614" g_stop="121485" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="208" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121484" i_stop="121371" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121370" g_stop="121291" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="288" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121290" i_stop="121200" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121199" g_stop="121065" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="423" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121064" i_stop="120579" i_length="486">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120578" g_stop="120228" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="774" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E548210" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121797" e_stop="121720"/>
          <exon e_start="121614" e_stop="121485"/>
          <exon e_start="121370" e_stop="121291"/>
          <exon e_start="121199" e_stop="121065"/>
          <exon e_start="120578" e_stop="120228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAACGTGTTGTGCCTCCATCAGCTCTTGAGGTTTTGATGAGGATCACCTTCCCAGCACCTTCTGCTCGAATTAAGGTGATTTTTACTGCTGTTATTATGCGTTCCATCAATATTCTAATAAGTTACTAATAAATATATTCATTTTGTATGGGAGTAATTTGTGAGGCTTGTTATGTTCAGGCCACTGACAGGTTTGAAGCGGTCTATCCTACACTGAAAGAGGTAGCTCTTGTTGCTGCCCCTGGGAGCAAAGCAATGAAGCAGCTAACCCAGCGGATACTGCCTTTTGCTATCAAAGCTGTAGGGGAAGGTAAAGCAAAAAGTTCGACTCTATGTTGACTCTGTAGCTCCTTTGTTTTTTGCGTCTGATTTGTTAGTGATTGCTTATTCAGCTATATAGTCCTAAATATTACATGTTCTATAGGTGTTCCTGATCTATCAAAGGAAGCTACTGAGCTATCTATTTGGTGTTTGACTCAGAACCCCGACTGTTACAAGCTGTGGGTAAGAAATCAAAGTTCTTGATTTTATCTTTCCAAACTCATCCCTTTATTTATCTAATTTCTCTGTTATCTTTCCATTGTGATTGTAACAGGACAATATTTATCTGGACAATGTAGAAGCAAGTCTAATAATAATTAAGAAGCTGTCCACAGAGTTCAAGGCGCATTCTGCTAAGGGACCTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAGGTATGTTAATCTTTCTGAGTTGAAAATACCAGAATGATATCTATTGAACAAAAGATGAAGTCTATCAAATTTTACAAGTTATTTGGTTACTCTTGTTATAGGTCTGTTTCAGTTGAAAAGGTAATTATAGTTTCATGCTCACTTTTGGGATTTTGTTTTTGGTGGGGCGAGGGCATTGGCATTGGCATTAGAAAAAGAGTCCACAAGGCCAGACATCATTGTTCTTTTTGCCACGCTTACAGCGATATTGTATTATTTCTGTGTTTATCTTTCAGCACTAATTGGCATGCCTTAAGAGATGTAAGGTGTCTTTGGCATGAAATATGACACATGAGATTCCACATATTAATTTTTTTGGATTAGTCAAAAATCATAAACAACGAAGGATAGTATGGCCCTCTCAAGAAAGGAAACAAGTAGTTTAATGGACATCATATAGCCGATGTTAATTTCATCTGATACTTTTTTTTCTTTATGATACTGTAGAGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTTTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCTCCAAGGAGTCCCCGGAGGTCAAGAAACTGTTGGCAGATCGCTTCAATGACTTGCAGTCCCTGGACTTCAAGAAACTGTTGACAGATCTCTCCAACGACGTGCAGTCCCTGGATTTCAAGAAACTGTTGTCAGATTTCAACTTGGCTTGAAACTTCCCCTTCTCACATAGAGGGTTGTAAGTTAAA</genome_strand>
        <mrna_strand>GGAGAACGTGTTGTGCCTCCATCAGCTCTTGAGGTTTTGATGAGGATCACCTTCCCAGCACCTTCTGCTCGAATTAAG.........................................................................................................GCCACTGAAAGGTTTGAAGCGGTCTATCCTACACTGAAAGAGGTAGCTCTTGTTGCTGCCCCTGGGAGCAAAGCAATGAAGCAGCTAACCCAGCGGATACTGCCTTTTGCTATCAAAGCTGTAGGGGAAG..................................................................................................................GTGTTCCTGATCTATCAAAGGAGGCTACTGAGCTATCTATTTGGTGTTTGACTCAGAACCCCGACTGTTACAAGCTGTGG...........................................................................................GACAATATTTATCTGGACAATGTAGAAGCAAGTCTAATAATAATTAAGAAGCTGTCCACAGAGTTCAAGGCGCATTCTGTTAAGGGACCTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTCTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCTCCAAGGAGTCCCCGGAGGTCAAGAAACTGTTGGCAGATCGCTTCAATGACTTGCAGTCCCTGGACTTCAAGAAACTGTTGACAGATCTCTCCAACGACGTGCAGTCCCTGGATTTCAAGAAACTGTTGTCAGATTTCAACTTGGCTTGAAACTTCCCCTTCTCACATAGAGGGGTGTAAGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539381" ref_strand="+" ref_description="SGN-E539381 [TUS-59-B19]">
      <seq>ggagaacgtgttgtgcctccatcagctcttgaggttttgatgaggatcaccttcccagcaccttctgctcgaattaaggccactgaaaggtttgaagcggtctatcctacactgaaagaggtagctcttgttgctgcccctgggagcaaagcaatgaagcagctaacccagcggatactgccttttgctatcaaagctgtaggggaaggtgttcctgatctatcaaaggaggctactgagctatctatttggtgtttgactcagaaccccgactgttacaagctgtgggacaatatttatctggacaatgtagaagcaagtctaataataattaagaagctgtccacagagttcaaggcgcattctgttaagggacctgaacttgatccattgaaggtgaccttgaacagtctcagacttaagagcgagaaggcattggtcagtggggataatgctgctcatcaagcgtccttgaaggaagtgcagaagtactgcaagattctacttggacgtttatcccatggtaatggatgcatgaaggctttctttgttatcggtctaacaatggctgtgggtgttgcttttgtctccaaggagtccccggaggtcaagaaactgttggcagatcgcttcaatgacttgcagtccctggacttcaagaaactgttgacagatctctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="122097" stop="120020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121797" g_stop="121720" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121719" i_stop="121615" i_length="105">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121614" g_stop="121485" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="208" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121484" i_stop="121371" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121370" g_stop="121291" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="288" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121290" i_stop="121200" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121199" g_stop="121065" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="423" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121064" i_stop="120579" i_length="486">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120578" g_stop="120320" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="682" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E539381" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121797" e_stop="121720"/>
          <exon e_start="121614" e_stop="121485"/>
          <exon e_start="121370" e_stop="121291"/>
          <exon e_start="121199" e_stop="121065"/>
          <exon e_start="120578" e_stop="120320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAACGTGTTGTGCCTCCATCAGCTCTTGAGGTTTTGATGAGGATCACCTTCCCAGCACCTTCTGCTCGAATTAAGGTGATTTTTACTGCTGTTATTATGCGTTCCATCAATATTCTAATAAGTTACTAATAAATATATTCATTTTGTATGGGAGTAATTTGTGAGGCTTGTTATGTTCAGGCCACTGACAGGTTTGAAGCGGTCTATCCTACACTGAAAGAGGTAGCTCTTGTTGCTGCCCCTGGGAGCAAAGCAATGAAGCAGCTAACCCAGCGGATACTGCCTTTTGCTATCAAAGCTGTAGGGGAAGGTAAAGCAAAAAGTTCGACTCTATGTTGACTCTGTAGCTCCTTTGTTTTTTGCGTCTGATTTGTTAGTGATTGCTTATTCAGCTATATAGTCCTAAATATTACATGTTCTATAGGTGTTCCTGATCTATCAAAGGAAGCTACTGAGCTATCTATTTGGTGTTTGACTCAGAACCCCGACTGTTACAAGCTGTGGGTAAGAAATCAAAGTTCTTGATTTTATCTTTCCAAACTCATCCCTTTATTTATCTAATTTCTCTGTTATCTTTCCATTGTGATTGTAACAGGACAATATTTATCTGGACAATGTAGAAGCAAGTCTAATAATAATTAAGAAGCTGTCCACAGAGTTCAAGGCGCATTCTGCTAAGGGACCTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAGGTATGTTAATCTTTCTGAGTTGAAAATACCAGAATGATATCTATTGAACAAAAGATGAAGTCTATCAAATTTTACAAGTTATTTGGTTACTCTTGTTATAGGTCTGTTTCAGTTGAAAAGGTAATTATAGTTTCATGCTCACTTTTGGGATTTTGTTTTTGGTGGGGCGAGGGCATTGGCATTGGCATTAGAAAAAGAGTCCACAAGGCCAGACATCATTGTTCTTTTTGCCACGCTTACAGCGATATTGTATTATTTCTGTGTTTATCTTTCAGCACTAATTGGCATGCCTTAAGAGATGTAAGGTGTCTTTGGCATGAAATATGACACATGAGATTCCACATATTAATTTTTTTGGATTAGTCAAAAATCATAAACAACGAAGGATAGTATGGCCCTCTCAAGAAAGGAAACAAGTAGTTTAATGGACATCATATAGCCGATGTTAATTTCATCTGATACTTTTTTTTCTTTATGATACTGTAGAGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTTTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCTCCAAGGAGTCCCCGGAGGTCAAGAAACTGTTGGCAGATCGCTTCAATGACTTGCAGTCCCTGGACTTCAAGAAACTGTTGACAGATCTCTCCA</genome_strand>
        <mrna_strand>GGAGAACGTGTTGTGCCTCCATCAGCTCTTGAGGTTTTGATGAGGATCACCTTCCCAGCACCTTCTGCTCGAATTAAG.........................................................................................................GCCACTGAAAGGTTTGAAGCGGTCTATCCTACACTGAAAGAGGTAGCTCTTGTTGCTGCCCCTGGGAGCAAAGCAATGAAGCAGCTAACCCAGCGGATACTGCCTTTTGCTATCAAAGCTGTAGGGGAAG..................................................................................................................GTGTTCCTGATCTATCAAAGGAGGCTACTGAGCTATCTATTTGGTGTTTGACTCAGAACCCCGACTGTTACAAGCTGTGG...........................................................................................GACAATATTTATCTGGACAATGTAGAAGCAAGTCTAATAATAATTAAGAAGCTGTCCACAGAGTTCAAGGCGCATTCTGTTAAGGGACCTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTCTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCTCCAAGGAGTCCCCGGAGGTCAAGAAACTGTTGGCAGATCGCTTCAATGACTTGCAGTCCCTGGACTTCAAGAAACTGTTGACAGATCTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284452" ref_strand="+" ref_description="SGN-E284452 [cLER-16-B6]">
      <seq>gagaacgtgttgtgcctccatcagctcttgaggttttgatgaggatcaccttcccagcaccttctgctcgaattaaggccactgaaaggtttgaagcggtctatcctacactgaaagaggtagctcttgttgctgcccctgggagcaaagcaatgaagcagctaacccagcggatactgccttttgctatcaaagctgtaggggaaggtgttcctgatctatcaaaggaggctactgagctatctatttggtgttcgactcagaaccccgactgttacaagctgtgggacaatatttatctggacaatgtagaagcacgtctaataataattaagaagctgtccacanaccgcagaggggcattctgttaagggacctgaacttgatccattnaatgtgaccttgaacagtctcagacttaagagcgagaaggcattggtcagtggggataatgctgctcatcaagcgtccttgaaggaagtgcagaagtactgcaagattctacttggacgtttatcccatggtaatggatgcatgaaagctttctttgttatcggtctaacaatggctgtgggtgttgcttttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="122096" stop="120113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121796" g_stop="121720" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121719" i_stop="121615" i_length="105">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121614" g_stop="121485" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="207" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121484" i_stop="121371" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121370" g_stop="121291" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="287" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121290" i_stop="121200" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121199" g_stop="121065" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="423" r_length="136" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121064" i_stop="120579" i_length="486">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120578" g_stop="120413" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="589" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E284452" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121796" e_stop="121720"/>
          <exon e_start="121614" e_stop="121485"/>
          <exon e_start="121370" e_stop="121291"/>
          <exon e_start="121199" e_stop="121065"/>
          <exon e_start="120578" e_stop="120413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACGTGTTGTGCCTCCATCAGCTCTTGAGGTTTTGATGAGGATCACCTTCCCAGCACCTTCTGCTCGAATTAAGGTGATTTTTACTGCTGTTATTATGCGTTCCATCAATATTCTAATAAGTTACTAATAAATATATTCATTTTGTATGGGAGTAATTTGTGAGGCTTGTTATGTTCAGGCCACTGACAGGTTTGAAGCGGTCTATCCTACACTGAAAGAGGTAGCTCTTGTTGCTGCCCCTGGGAGCAAAGCAATGAAGCAGCTAACCCAGCGGATACTGCCTTTTGCTATCAAAGCTGTAGGGGAAGGTAAAGCAAAAAGTTCGACTCTATGTTGACTCTGTAGCTCCTTTGTTTTTTGCGTCTGATTTGTTAGTGATTGCTTATTCAGCTATATAGTCCTAAATATTACATGTTCTATAGGTGTTCCTGATCTATCAAAGGAAGCTACTGAGCTATCTATTTGGTGTTTGACTCAGAACCCCGACTGTTACAAGCTGTGGGTAAGAAATCAAAGTTCTTGATTTTATCTTTCCAAACTCATCCCTTTATTTATCTAATTTCTCTGTTATCTTTCCATTGTGATTGTAACAGGACAATATTTATCTGGACAATGTAGAAGCAAGTCTAATAATAATTAAGAAGCTGTCCACAGAGTTCA-AGGCGCATTCTGCTAAGGGACCTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAGGTATGTTAATCTTTCTGAGTTGAAAATACCAGAATGATATCTATTGAACAAAAGATGAAGTCTATCAAATTTTACAAGTTATTTGGTTACTCTTGTTATAGGTCTGTTTCAGTTGAAAAGGTAATTATAGTTTCATGCTCACTTTTGGGATTTTGTTTTTGGTGGGGCGAGGGCATTGGCATTGGCATTAGAAAAAGAGTCCACAAGGCCAGACATCATTGTTCTTTTTGCCACGCTTACAGCGATATTGTATTATTTCTGTGTTTATCTTTCAGCACTAATTGGCATGCCTTAAGAGATGTAAGGTGTCTTTGGCATGAAATATGACACATGAGATTCCACATATTAATTTTTTTGGATTAGTCAAAAATCATAAACAACGAAGGATAGTATGGCCCTCTCAAGAAAGGAAACAAGTAGTTTAATGGACATCATATAGCCGATGTTAATTTCATCTGATACTTTTTTTTCTTTATGATACTGTAGAGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTTTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCT</genome_strand>
        <mrna_strand>GAGAACGTGTTGTGCCTCCATCAGCTCTTGAGGTTTTGATGAGGATCACCTTCCCAGCACCTTCTGCTCGAATTAAG.........................................................................................................GCCACTGAAAGGTTTGAAGCGGTCTATCCTACACTGAAAGAGGTAGCTCTTGTTGCTGCCCCTGGGAGCAAAGCAATGAAGCAGCTAACCCAGCGGATACTGCCTTTTGCTATCAAAGCTGTAGGGGAAG..................................................................................................................GTGTTCCTGATCTATCAAAGGAGGCTACTGAGCTATCTATTTGGTGTTCGACTCAGAACCCCGACTGTTACAAGCTGTGG...........................................................................................GACAATATTTATCTGGACAATGTAGAAGCACGTCTAATAATAATTAAGAAGCTGTCCACANACCGCAGAGGGGCATTCTGTTAAGGGACCTGAACTTGATCCATTNAATGTGACCTTGAACAGTCTCAGACTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTCTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAAGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313345" ref_strand="+" ref_description="SGN-E313345 [cTOA-13-O18]">
      <seq>agaaggattcgtatagttgagtctcagaagctttatgaagctgcttccggtgaaagttctgccgtcattgataaaaacgagcaggatagcgatggagaagatgccgctggtggtgcaattgagaatgacggtgttgtggagaagaagagtaagccgaagaaggtgaagaaacctaaggttactgttgctgaagctgctgcgaagatcgataattctgatctagttgtttatctcgttgatatatcaacctcgtttgataagcaggaagatatacagctaatgcgatttgcagattactttggacgagcattcgccaaagtgagttcatctcagttcccatggatgaagattcttagggaatcttcagttgagaagatgattgatatccctgtttctcaaatttctgaggatgtttataagacatctgttgactggcttaaccagcgatcatttgatgcacttggttcctttgtgttatggtcattggatagcattattgctgatcttgtacagcacgaaagagcttcaaagggatccaaaaaggtggttcagcaagtatcttcaaaatcccaggttgccatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="125349" stop="123541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125042" g_stop="124824" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="246" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124823" i_stop="124729" i_length="95">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124728" g_stop="124591" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="384" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124590" i_stop="124032" i_length="559">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124031" g_stop="123843" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="573" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-E313345" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125042" e_stop="124824"/>
          <exon e_start="124728" e_stop="124591"/>
          <exon e_start="124031" e_stop="123843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTATGAAGCTGCTTCCGGTGAAAGTTCTGCCGTCATTGATAAAAACGAGCAGGATAGCGATGGAGAAGATGCCGCTGGTGGTGCAATTGAGAATGACGGTGTTGTGGAGAAGAAGAGTAAGCCGAAGAAGGTGAAGAAACCTAAGGTTACTGTTGCTGAAGCTGCTGCGAAGATCGATAATTCTGATCTAGTTGTTTATCTCGTTGATATATCAGTGAGTTTTCAATTGGAAAAATCTGATCTGTTGTTTTTTATTGGTGAATTCTGAATGTTTAATTGTGGAGTTCCTTTTTTTTTTTAAATTTGCAGACCTCGTTTGATAAGCAGGAAGATATACAGCTAATGCGATTTGCAGATTACTTTGGACGAGCATTCGCCAAAGTGAGTTCATCTCAGTTCCCATGGATGAAGATTCTTAGGGAATCTTCAGTTGAGAAGATGATTGATGTGAGTTTTTCTCTTTCTTTTTTTAGTTTTTTTAATGTTCAATTAGATTTTATTTACTTGTTAGATGCTTAAATGTGTAGAAAGCTAAATTTGAGTCTTTGTACTTGAATGTTCTGGTCATGGAATAGATGAAATAAATCAAATCAATGAATTTTTATTCAATAATGAAAATCGAGATCAATGCAGTTAAATTATGTCTCTCTTATAAGTTGGTTAGCTACCTATCATTTTGTTCTAGGATTCTTCTTCGAATCCTACTTGGGGAGATTTGATTGAATCCAAATTCTTTGATTCAGAATAAAGGGGATCTTGTACTTTTGTTTACACCTATTCTATTGTGTGATATAGAAACTAGCAAGTATATAATTCTGCAATATTCTGTTTTTATATCCTTGATTTTTTTGAGGGAATGCCTTACATGTTATATGAAATGTTCTTGATCTTTAATTTGATAGTCTGAATGGTATCACCTGCAAATTTTAATTTTTGAGTAATCAATTTATTGTCTTATTGGTAATGCTGTTTCTTATAATGAGTTAACTCTCTTGTTATTGAACAGATCCCTGTTTCTCAAATTTCTGAGGATGTTTATAAGACATCTGTTGACTGGCTTAACCAGCGATCATTTGATGCACTTGGTTCCTTTGTGTTATGGTCATTGGATAGCATTATTGCTGATCTTGTACAGCACGAAGGAGCTTCAAAGGGATCCAAAAAGGTGGTTCAGCAAGTATCTTCAAAATCCCAG</genome_strand>
        <mrna_strand>AAGCTTTATGAAGCTGCTTCCGGTGAAAGTTCTGCCGTCATTGATAAAAACGAGCAGGATAGCGATGGAGAAGATGCCGCTGGTGGTGCAATTGAGAATGACGGTGTTGTGGAGAAGAAGAGTAAGCCGAAGAAGGTGAAGAAACCTAAGGTTACTGTTGCTGAAGCTGCTGCGAAGATCGATAATTCTGATCTAGTTGTTTATCTCGTTGATATATCA...............................................................................................ACCTCGTTTGATAAGCAGGAAGATATACAGCTAATGCGATTTGCAGATTACTTTGGACGAGCATTCGCCAAAGTGAGTTCATCTCAGTTCCCATGGATGAAGATTCTTAGGGAATCTTCAGTTGAGAAGATGATTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTGTTTCTCAAATTTCTGAGGATGTTTATAAGACATCTGTTGACTGGCTTAACCAGCGATCATTTGATGCACTTGGTTCCTTTGTGTTATGGTCATTGGATAGCATTATTGCTGATCTTGTACAGCACGAAAGAGCTTCAAAGGGATCCAAAAAGGTGGTTCAGCAAGTATCTTCAAAATCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>162</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13385" PGL_stop="8422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13385" e_stop="12976"/>
            <exon e_start="8543" e_stop="8422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13385" e_stop="12976" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12975" i_stop="8544" i_length="4432"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8543" e_stop="8422" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13385" stop="12976"/>
              <exon start="8543" stop="8422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGCAGTCACTTGCCTTATCCAATCAGTCAGAAGGATTTCCAGAATCTGCTATTCATTTTTTCTTGGTACCTCTTGCTGGATTGTGGGATATATCTAAGGCAAACGGAAAAACACCAAATGATTATAGGCACATAAAGTTATCTTTTTCGGAAGAGTTGAAGGAGTTTGGACTTCGTTTGCTGTATAAAGATGAATCTAAGCTCAAGGCCCTGTGTGAAATGACGGGAAATAATGATGAACCAACAGAACACTGCATCGTGAAAAGGAGGGGTCAGTATGATGATGCCAGATGCTCTTCTTCTAAGAAACAAAGGTCACAGCTCTAGTATTTGTCTTTGAGAATCTGCTGCAACAACCAGTCTCTTCACAAACTTTGCAGCTCTTGTCTCTCTGCTTCTGCCGAGCCATG : AAAGAAGTAGCTATGGATGGTTATGCAAAAATGAATGCTGCGATCGCTAAGGCTGAAAAGGAAGAGCGGGAGTGGGATGAGATTGATCGAATGCCGTTTGGACAGCGAATGAACTCACTGAT</gDNA_template>
            <first_frame> T  Q  S  L  A  L  S  N  Q  S  E  G  F  P  E  S  A  I  H  F  F  L  V  P  L  A  G  L  W  D  I  S  K  A  N  G  K  T  P  N  D  Y  R  H  I  K  L  S  F  S  E  E  L  K  E  F  G  L  R  L  L  Y  K  D  E  S  K  L  K  A  L  C  E  M  T  G  N  N  D  E  P  T  E  H  C  I  V  K  R  R  G  Q  Y  D  D  A  R  C  S  S  S  K  K  Q  R  S  Q  L  *  Y  L  S  L  R  I  C  C  N  N  Q  S  L  H  K  L  C  S  S  C  L  S  A  S  A  E  P  * :   K  K  *  L  W  M  V  M  Q  K  *  M  L  R  S  L  R  L  K  R  K  S  G  S  G  M  R  L  I  E  C  R  L  D  S  E  *  T  H  *  </first_frame>
            <second_frame>  R  S  H  L  P  Y  P  I  S  Q  K  D  F  Q  N  L  L  F  I  F  S  W  Y  L  L  L  D  C  G  I  Y  L  R  Q  T  E  K  H  Q  M  I  I  G  T  *  S  Y  L  F  R  K  S  *  R  S  L  D  F  V  C  C  I  K  M  N  L  S  S  R  P  C  V  K  *  R  E  I  M  M  N  Q  Q  N  T  A  S  *  K  G  G  V  S  M  M  M  P  D  A  L  L  L  R  N  K  G  H  S  S  S  I  C  L  *  E  S  A  A  T  T  S  L  F  T  N  F  A  A  L  V  S  L  L  L  P  S  H   : E  R  S  S  Y  G  W  L  C  K  N  E  C  C  D  R  *  G  *  K  G  R  A  G  V  G  *  D  *  S  N  A  V  W  T  A  N  E  L  T  D </second_frame>
            <third_frame>   A  V  T  C  L  I  Q  S  V  R  R  I  S  R  I  C  Y  S  F  F  L  G  T  S  C  W  I  V  G  Y  I  *  G  K  R  K  N  T  K  *  L  *  A  H  K  V  I  F  F  G  R  V  E  G  V  W  T  S  F  A  V  *  R  *  I  *  A  Q  G  P  V  *  N  D  G  K  *  *  *  T  N  R  T  L  H  R  E  K  E  G  S  V  *  *  C  Q  M  L  F  F  *  E  T  K  V  T  A  L  V  F  V  F  E  N  L  L  Q  Q  P  V  S  S  Q  T  L  Q  L  L  S  L  C  F  C  R  A  M  :  K  E  V  A  M  D  G  Y  A  K  M  N  A  A  I  A  K  A  E  K  E  E  R  E  W  D  E  I  D  R  M  P  F  G  Q  R  M  N  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13385" stop="13059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQSLALSNQSEGFPESAIHFFLVPLAGLWDISKANGKTPNDYRHIKLSFSEELKEFGLRLLYKDESKLKALCEMTGNNDEPTEHCIVKRRGQYDDARCSSSKKQRSQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13080" stop="12976"/>
                    <exon start="8543" stop="8424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKVTALVFVFENLLQQPVSSQTLQLLSLCFCRAMKEVAMDGYAKMNAAIAKAEKEEREWDEIDRMPFGQRMNSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13641" PGL_stop="14361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13641" e_stop="14361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13641" e_stop="14361" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13641" stop="14361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTACAGATTGAATCATTGCTCCAATCGGCGTATATTGTGTCTAATTGCCGTGGAAATTCTGGCAGTTGTGTAAGCTTCTTGCAATCTAATAAGTCCAAGGATTGAAGAGCACAAAGTCGGGCTATGCTTTGAGGCAAATGCTCGAAATTATTTCCCCTCAGATTCAACGCTTTCAAACAGTGTAGGCATCCAATGTCTATCGGAAGTCCTTCATTTATTAGATTGCAGTAACTGAGATCCAGATGTTCCAATGAGCGCAATCCTTCATTCACTCGAGGGAATGAAAAGTACACTCCGTTTTCGAGGCCTACTTCTGATTTTTGTTTTGCAAAAGTCAAAACTTTAAGCCTGTTCAAGCGGACGATGGAAGACGGAGGTTGTGAGATTAGAGTACATCTGGCCTCAAGTATCTCCAGGTTTTCTAAATCACCTATCTCTTTTGGCAAGATTTTGAGTTTTGAGCAGTCGGACACTTTTAGCTTTACCAAACGTTTTAACTCGCCAATGCTGCTTGGAAGTGTTGCAAGGTTTTGCATGCCAATCAAATCTAGTTCTGTAAGACAAGACTGGTGCTGAATAATAGCTGATGGTAGTTTCCTTATCCCAGAACGTTGCACTTGAATCTTTATCTCTGGCTTCAATTTTCCCCGGATCTTCGGGAATTTCTCTAAATTAGAGCAACCTTGTAGATATAGACATTCAAGAGATTCCCAGCAAACA</gDNA_template>
            <first_frame> I  T  D  *  I  I  A  P  I  G  V  Y  C  V  *  L  P  W  K  F  W  Q  L  C  K  L  L  A  I  *  *  V  Q  G  L  K  S  T  K  S  G  Y  A  L  R  Q  M  L  E  I  I  S  P  Q  I  Q  R  F  Q  T  V  *  A  S  N  V  Y  R  K  S  F  I  Y  *  I  A  V  T  E  I  Q  M  F  Q  *  A  Q  S  F  I  H  S  R  E  *  K  V  H  S  V  F  E  A  Y  F  *  F  L  F  C  K  S  Q  N  F  K  P  V  Q  A  D  D  G  R  R  R  L  *  D  *  S  T  S  G  L  K  Y  L  Q  V  F  *  I  T  Y  L  F  W  Q  D  F  E  F  *  A  V  G  H  F  *  L  Y  Q  T  F  *  L  A  N  A  A  W  K  C  C  K  V  L  H  A  N  Q  I  *  F  C  K  T  R  L  V  L  N  N  S  *  W  *  F  P  Y  P  R  T  L  H  L  N  L  Y  L  W  L  Q  F  S  P  D  L  R  E  F  L  *  I  R  A  T  L  *  I  *  T  F  K  R  F  P  A  N  </first_frame>
            <second_frame>  L  Q  I  E  S  L  L  Q  S  A  Y  I  V  S  N  C  R  G  N  S  G  S  C  V  S  F  L  Q  S  N  K  S  K  D  *  R  A  Q  S  R  A  M  L  *  G  K  C  S  K  L  F  P  L  R  F  N  A  F  K  Q  C  R  H  P  M  S  I  G  S  P  S  F  I  R  L  Q  *  L  R  S  R  C  S  N  E  R  N  P  S  F  T  R  G  N  E  K  Y  T  P  F  S  R  P  T  S  D  F  C  F  A  K  V  K  T  L  S  L  F  K  R  T  M  E  D  G  G  C  E  I  R  V  H  L  A  S  S  I  S  R  F  S  K  S  P  I  S  F  G  K  I  L  S  F  E  Q  S  D  T  F  S  F  T  K  R  F  N  S  P  M  L  L  G  S  V  A  R  F  C  M  P  I  K  S  S  S  V  R  Q  D  W  C  *  I  I  A  D  G  S  F  L  I  P  E  R  C  T  *  I  F  I  S  G  F  N  F  P  R  I  F  G  N  F  S  K  L  E  Q  P  C  R  Y  R  H  S  R  D  S  Q  Q  T </second_frame>
            <third_frame>   Y  R  L  N  H  C  S  N  R  R  I  L  C  L  I  A  V  E  I  L  A  V  V  *  A  S  C  N  L  I  S  P  R  I  E  E  H  K  V  G  L  C  F  E  A  N  A  R  N  Y  F  P  S  D  S  T  L  S  N  S  V  G  I  Q  C  L  S  E  V  L  H  L  L  D  C  S  N  *  D  P  D  V  P  M  S  A  I  L  H  S  L  E  G  M  K  S  T  L  R  F  R  G  L  L  L  I  F  V  L  Q  K  S  K  L  *  A  C  S  S  G  R  W  K  T  E  V  V  R  L  E  Y  I  W  P  Q  V  S  P  G  F  L  N  H  L  S  L  L  A  R  F  *  V  L  S  S  R  T  L  L  A  L  P  N  V  L  T  R  Q  C  C  L  E  V  L  Q  G  F  A  C  Q  S  N  L  V  L  *  D  K  T  G  A  E  *  *  L  M  V  V  S  L  S  Q  N  V  A  L  E  S  L  S  L  A  S  I  F  P  G  S  S  G  I  S  L  N  *  S  N  L  V  D  I  D  I  Q  E  I  P  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13873" stop="14217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRSRCSNERNPSFTRGNEKYTPFSRPTSDFCFAKVKTLSLFKRTMEDGGCEIRVHLASSISRFSKSPISFGKILSFEQSDTFSFTKRFNSPMLLGSVARFCMPIKSSSVRQDWC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15741" PGL_stop="14118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15741" e_stop="15659"/>
            <exon e_start="15233" e_stop="14958"/>
            <exon e_start="14564" e_stop="14118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.614" acc_prob="0.996" e_score="0.975"/>
          <exon-intron don_prob="0.999" acc_prob="0.834" e_score="0.993"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="15741" e_stop="15659" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.614" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15658" i_stop="15234" i_length="425"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="15233" e_stop="14958" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.834">
            <gDNA_intron_boundary i_start="14957" i_stop="14565" i_length="393"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="14564" e_stop="14118" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15741" stop="15659"/>
              <exon start="15233" stop="14958"/>
              <exon start="14564" stop="14118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15737" stop="15659"/>
              <exon start="15233" stop="14958"/>
              <exon start="14564" stop="14227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACATTGCAAAAGGAAAGGGGAGAACTCAGCAGACTATGGCTCACTCAAGATTTCGAAAAATTCTCAAATGCAAAAATACAA : GGGACCAAGGCAATCGAAACAATCTGGATACCAGAAATTCAAGACCTAAGCTTTAAAAAAAAGGCCATGAAAGACGTGGAAAAGCTTAGGATATTATACATCAATGGTTTTCATACACATGATAGCTCCAACGATCAGTACCTTCCCAGCAACTTGCGTTGGTTCGACTGTTGTAAGTATCCTTGGGAATCATTGCCAGCCAAATTTGATCCTGACATGCTTGTTCATCTTGATCTCCAGCAGAGTTCACTGTTTCATTTATGGACCGGAACAAAG : AAATTTCCTTTTCTACGGAGGCTGGTTCTCAGCCGCTGTGCTAACTTGAGGCGAACACCAGATTTCTCGGATATGCCAAATTTGGAGTATTTGGGTCTAAAAGAGTGTACCAATCTTAAAGAGGTTCACCATTCCTTGAGATGTTCCAAAAAACTCAATAAGTTAAATTTGAGAGACTGTAAAAGCCTCGAGAGTTTTAGCTATGTTTGCTGGGAATCTCTTGAATGTCTATATCTACAAGGTTGCTCTAATTTAGAGAAATTCCCGAAGATCCGGGGAAAATTGAAGCCAGAGATAAAGATTCAAGTGCAACGTTCTGGGATAAGGAAACTACCATCAGCTATTATTCAGCACCAGTCTTGTCTTACAGAACTAGATTTGATTGGCATGCAAAACCTTGCAACACTTCCAAGCAGCATTGGCGAGTTAAAACGTTTGGTAAAGCTA</gDNA_template>
            <first_frame> *  H  C  K  R  K  G  E  N  S  A  D  Y  G  S  L  K  I  S  K  N  S  Q  M  Q  K  Y  K :   G  P  R  Q  S  K  Q  S  G  Y  Q  K  F  K  T  *  A  L  K  K  R  P  *  K  T  W  K  S  L  G  Y  Y  T  S  M  V  F  I  H  M  I  A  P  T  I  S  T  F  P  A  T  C  V  G  S  T  V  V  S  I  L  G  N  H  C  Q  P  N  L  I  L  T  C  L  F  I  L  I  S  S  R  V  H  C  F  I  Y  G  P  E  Q  R :   N  F  L  F  Y  G  G  W  F  S  A  A  V  L  T  *  G  E  H  Q  I  S  R  I  C  Q  I  W  S  I  W  V  *  K  S  V  P  I  L  K  R  F  T  I  P  *  D  V  P  K  N  S  I  S  *  I  *  E  T  V  K  A  S  R  V  L  A  M  F  A  G  N  L  L  N  V  Y  I  Y  K  V  A  L  I  *  R  N  S  R  R  S  G  E  N  *  S  Q  R  *  R  F  K  C  N  V  L  G  *  G  N  Y  H  Q  L  L  F  S  T  S  L  V  L  Q  N  *  I  *  L  A  C  K  T  L  Q  H  F  Q  A  A  L  A  S  *  N  V  W  *  S   </first_frame>
            <second_frame>  D  I  A  K  G  K  G  R  T  Q  Q  T  M  A  H  S  R  F  R  K  I  L  K  C  K  N  T   : R  D  Q  G  N  R  N  N  L  D  T  R  N  S  R  P  K  L  *  K  K  G  H  E  R  R  G  K  A  *  D  I  I  H  Q  W  F  S  Y  T  *  *  L  Q  R  S  V  P  S  Q  Q  L  A  L  V  R  L  L  *  V  S  L  G  I  I  A  S  Q  I  *  S  *  H  A  C  S  S  *  S  P  A  E  F  T  V  S  F  M  D  R  N  K   : E  I  S  F  S  T  E  A  G  S  Q  P  L  C  *  L  E  A  N  T  R  F  L  G  Y  A  K  F  G  V  F  G  S  K  R  V  Y  Q  S  *  R  G  S  P  F  L  E  M  F  Q  K  T  Q  *  V  K  F  E  R  L  *  K  P  R  E  F  *  L  C  L  L  G  I  S  *  M  S  I  S  T  R  L  L  *  F  R  E  I  P  E  D  P  G  K  I  E  A  R  D  K  D  S  S  A  T  F  W  D  K  E  T  T  I  S  Y  Y  S  A  P  V  L  S  Y  R  T  R  F  D  W  H  A  K  P  C  N  T  S  K  Q  H  W  R  V  K  T  F  G  K  A  </second_frame>
            <third_frame>   T  L  Q  K  E  R  G  E  L  S  R  L  W  L  T  Q  D  F  E  K  F  S  N  A  K  I  Q  :  G  T  K  A  I  E  T  I  W  I  P  E  I  Q  D  L  S  F  K  K  K  A  M  K  D  V  E  K  L  R  I  L  Y  I  N  G  F  H  T  H  D  S  S  N  D  Q  Y  L  P  S  N  L  R  W  F  D  C  C  K  Y  P  W  E  S  L  P  A  K  F  D  P  D  M  L  V  H  L  D  L  Q  Q  S  S  L  F  H  L  W  T  G  T  K  :  K  F  P  F  L  R  R  L  V  L  S  R  C  A  N  L  R  R  T  P  D  F  S  D  M  P  N  L  E  Y  L  G  L  K  E  C  T  N  L  K  E  V  H  H  S  L  R  C  S  K  K  L  N  K  L  N  L  R  D  C  K  S  L  E  S  F  S  Y  V  C  W  E  S  L  E  C  L  Y  L  Q  G  C  S  N  L  E  K  F  P  K  I  R  G  K  L  K  P  E  I  K  I  Q  V  Q  R  S  G  I  R  K  L  P  S  A  I  I  Q  H  Q  S  C  L  T  E  L  D  L  I  G  M  Q  N  L  A  T  L  P  S  S  I  G  E  L  K  R  L  V  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15739" stop="15659"/>
                    <exon start="15233" stop="14958"/>
                    <exon start="14564" stop="14118"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLQKERGELSRLWLTQDFEKFSNAKIQGTKAIETIWIPEIQDLSFKKKAMKDVEKLRILYINGFHTHDSSNDQYLPSNLRWFDCCKYPWESLPAKFDPDMLVHLDLQQSSLFHLWTGTKKFPFLRRLVLSRCANLRRTPDFSDMPNLEYLGLKECTNLKEVHHSLRCSKKLNKLNLRDCKSLESFSYVCWESLECLYLQGCSNLEKFPKIRGKLKPEIKIQVQRSGIRKLPSAIIQHQSCLTELDLIGMQNLATLPSSIGELKRLVKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22762" PGL_stop="22570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22762" e_stop="22570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="22762" e_stop="22570" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22762" stop="22570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCTCAAGTGGATGAAGGGTTACGGTCATTGGAACATCTAGATCTCAGTTACTGCAATCTAATAGATGGAGGACTTCCAGAAGATATTGGTTGCCTACGCTCTTTGAAAGAGTTGTATCTCTGTGGAAATAATTTCGAGCATTTGCCTCGAAGCATAGCACAACTTGGCGCTCTTCGATTCTTGAACTTATC</gDNA_template>
            <first_frame> S  L  K  W  M  K  G  Y  G  H  W  N  I  *  I  S  V  T  A  I  *  *  M  E  D  F  Q  K  I  L  V  A  Y  A  L  *  K  S  C  I  S  V  E  I  I  S  S  I  C  L  E  A  *  H  N  L  A  L  F  D  S  *  T  Y  </first_frame>
            <second_frame>  P  S  S  G  *  R  V  T  V  I  G  T  S  R  S  Q  L  L  Q  S  N  R  W  R  T  S  R  R  Y  W  L  P  T  L  F  E  R  V  V  S  L  W  K  *  F  R  A  F  A  S  K  H  S  T  T  W  R  S  S  I  L  E  L  I </second_frame>
            <third_frame>   P  Q  V  D  E  G  L  R  S  L  E  H  L  D  L  S  Y  C  N  L  I  D  G  G  L  P  E  D  I  G  C  L  R  S  L  K  E  L  Y  L  C  G  N  N  F  E  H  L  P  R  S  I  A  Q  L  G  A  L  R  F  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0027B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37998" PGL_stop="38502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37998" e_stop="38502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37998" e_stop="38502" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37998" stop="38502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37998" stop="38502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTCGCGCTGTTACTTCACCGTCTTTTGACAATTTGGCTGCCACCGCTGGTCAAGTTGGCGGTGGAGCCACCAAAAGTGGTGGTACAAAAGATGTTACTATAGTTGTACATGATGGCATAAATGGTAAGGTAAATACTACTACTACTAGTGTTTACTCATCATCATCAACTAGCTATGTTGAGAATAATAAATATGGTATCTGCAAAATGGCGGTTACATTAGAGTCAGTAAACGATGATATTCGTGTTAATGATGGTGGTAGTGATAATAACGATGCAACCGGTGGTGCTAGCCATGCTAAAATAAGTAATAGTATTAATAGCTAAGCTTCTATGTGTTGGGAAAGAGGGTTTGTGCGGGGGATGATATCCCTACTCATATTATTATACTATTGTTCGATTTTATTATTATTGTTATATACTTTGTTTCAATTATCGTATTATCAATTCTTCATTTGAACAGATCGACTTTTTTATTTGATATCAATCTTATTATATTATACT</gDNA_template>
            <first_frame> V  S  R  C  Y  F  T  V  F  *  Q  F  G  C  H  R  W  S  S  W  R  W  S  H  Q  K  W  W  Y  K  R  C  Y  Y  S  C  T  *  W  H  K  W  *  G  K  Y  Y  Y  Y  *  C  L  L  I  I  I  N  *  L  C  *  E  *  *  I  W  Y  L  Q  N  G  G  Y  I  R  V  S  K  R  *  Y  S  C  *  *  W  W  *  *  *  *  R  C  N  R  W  C  *  P  C  *  N  K  *  *  Y  *  *  L  S  F  Y  V  L  G  K  R  V  C  A  G  D  D  I  P  T  H  I  I  I  L  L  F  D  F  I  I  I  V  I  Y  F  V  S  I  I  V  L  S  I  L  H  L  N  R  S  T  F  L  F  D  I  N  L  I  I  L  Y  </first_frame>
            <second_frame>  C  R  A  V  T  S  P  S  F  D  N  L  A  A  T  A  G  Q  V  G  G  G  A  T  K  S  G  G  T  K  D  V  T  I  V  V  H  D  G  I  N  G  K  V  N  T  T  T  T  S  V  Y  S  S  S  S  T  S  Y  V  E  N  N  K  Y  G  I  C  K  M  A  V  T  L  E  S  V  N  D  D  I  R  V  N  D  G  G  S  D  N  N  D  A  T  G  G  A  S  H  A  K  I  S  N  S  I  N  S  *  A  S  M  C  W  E  R  G  F  V  R  G  M  I  S  L  L  I  L  L  Y  Y  C  S  I  L  L  L  L  L  Y  T  L  F  Q  L  S  Y  Y  Q  F  F  I  *  T  D  R  L  F  Y  L  I  S  I  L  L  Y  Y  T </second_frame>
            <third_frame>   V  A  L  L  L  H  R  L  L  T  I  W  L  P  P  L  V  K  L  A  V  E  P  P  K  V  V  V  Q  K  M  L  L  *  L  Y  M  M  A  *  M  V  R  *  I  L  L  L  L  V  F  T  H  H  H  Q  L  A  M  L  R  I  I  N  M  V  S  A  K  W  R  L  H  *  S  Q  *  T  M  I  F  V  L  M  M  V  V  V  I  I  T  M  Q  P  V  V  L  A  M  L  K  *  V  I  V  L  I  A  K  L  L  C  V  G  K  E  G  L  C  G  G  *  Y  P  Y  S  Y  Y  Y  T  I  V  R  F  Y  Y  Y  C  Y  I  L  C  F  N  Y  R  I  I  N  S  S  F  E  Q  I  D  F  F  I  *  Y  Q  S  Y  Y  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37999" stop="38325"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRAVTSPSFDNLAATAGQVGGGATKSGGTKDVTIVVHDGINGKVNTTTTSVYSSSSTSYVENNKYGICKMAVTLESVNDDIRVNDGGSDNNDATGGASHAKISNSINS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="52365" PGL_stop="59288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52365" e_stop="52583"/>
            <exon e_start="53532" e_stop="53965"/>
            <exon e_start="55496" e_stop="55554"/>
            <exon e_start="55688" e_stop="55816"/>
            <exon e_start="57764" e_stop="57899"/>
            <exon e_start="58674" e_stop="59288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.852" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.277" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="52365" e_stop="52583" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.852" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52584" i_stop="53531" i_length="948"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53532" e_stop="53965" e_length="434"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="53966" i_stop="55495" i_length="1530"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55496" e_stop="55554" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.277">
            <gDNA_intron_boundary i_start="55555" i_stop="55687" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55688" e_stop="55816" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55817" i_stop="57763" i_length="1947"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57764" e_stop="57899" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57900" i_stop="58673" i_length="774"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="58674" e_stop="59288" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52365" stop="52583"/>
              <exon start="53532" stop="53723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52505" stop="52583"/>
              <exon start="53532" stop="53853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53663" stop="53965"/>
              <exon start="55496" stop="55554"/>
              <exon start="55688" stop="55816"/>
              <exon start="57764" stop="57899"/>
              <exon start="58674" stop="58760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53690" stop="53965"/>
              <exon start="55496" stop="55554"/>
              <exon start="55688" stop="55816"/>
              <exon start="57764" stop="57852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53691" stop="53965"/>
              <exon start="55496" stop="55554"/>
              <exon start="55688" stop="55809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53691" stop="53965"/>
              <exon start="55496" stop="55528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57768" stop="57899"/>
              <exon start="58674" stop="59280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57867" stop="57899"/>
              <exon start="58674" stop="59288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCGTTGGGTGTGGAAACGTTGTACTTACATAGGCAATGATGACAGTGCCACGTGGCCTCCAGCAACCTATGATGAATTTGAACCTATTCCTCGTCTTTGCCGTACAATTCTTGCTGTTTATGAAGATGACCTTCATAACCCAAAGTTTCCACCTGAAGGAGGATATAGGCTTAACGCTGATTGGGTGGTGAAGCGTGTGACGTATCGAGACACACTCG : GTAATGCTCCACCTTATTTGATTTACCTTGATCATGAGCACCATGAGATTGTTGTAGCCATTAGGGGTTTAAATTTGGTTAAAGAAAGTGATTATAAAGTCTTGATGGATAATAAGCTTGGGAAGCAGATGTTTGATGGTGGGTATGTGCATCATGGGTTGTTGAAGGCAGCAATTTGGATGTTGAATAAAGAATCCGAGACTTTGAAAAGGCTTTGGGTTGAGAATGGGAAGAGTTACAGGATGATATTTGTTGGACATTCTTTGGGTTCTGGAGTTGCATCATTGTTGACTATAATTGCGGCGAATCACGGGGATAGATTAGGGGGTATCCCAAGGAGTTCACTCCGTTGCTATGCTGTTGCTCCTGCTAGGTGTATGTCACTCAATTTGGCTGTTAAATATGCTGATGTTATCCACTCAGTGGTTTTGCAG : GATGATTTCTTACCACGAACTCCCACCCCCCTGGAAGATATATTCAAATCCGTCTTCTG : TTTACCATGCTTGTTATTTTTGGTGTGCTTGAGAGATACCTTCATACCAGAAGGTAGGAAACTCAGAGATCCAAGAAGATTATATGCACCTGGTCGAATGTATCACGTTGTTGAAAGAAAATTTTGCAG : ATGTGGGAGATTCCCTCCAGATGTTAGAACTGCCATCCCAGTTGATGGAAGATTTGAGCATATTGTGCTGTCATGCAATGCAACATCTGATCACGGAATTATTTGGATACAAAGAGAATCAGAGAAGGCGTTAGCG : AGACTCAAGGAGGCTACAAGTGCTGAGGCACCGACAGCTCCACCACCGGTGCAGAGAATTGAAAGGCAGCATACCCTAGAAAAAGAACACAAGAAAGCACTAGAAAGAGCTGTCACTTTGAATATTCCACACGCCGTGCCAACAGACACAGATGAGGAACTATCGGTACACAAAGAGGACGACTCAGGGCGAGGAGTAACAGAGACGGCTTTTCTTATAGAAGATGCATCCACAAGTACAAGCCATTCCACCGATGCAAGAACTAACTGGAACGATGTAGTTGAGAAGCTTTTCGCGCAAGATGAAACGGGGAAGTTGACATTGAACAAAGAAGCAAGTTGTAGTACTGAATGACAACCCTCTTTGAAGGTGCTCTCTCTCTCTTCTTATTTTTTTTTTTCTTTCAAATTTTTTTTTGTGATGGTTGAAGAAAAGTATTATTCTTGTTCAATTATTTGTACATTTTTCTTATGTAAAACAATATATATGAATTAGAATGTTCAATTTCTAAAGCCCCAAAGAGGGGAATATAGAAACAGAAAGAAATGAAAAGTGGTTGTAATTGCATTTTTATTTGTTTTGTTTGTGAAATGTTTTTGCATAGTTTTTGCTCCT</gDNA_template>
            <first_frame> C  V  G  C  G  N  V  V  L  T  *  A  M  M  T  V  P  R  G  L  Q  Q  P  M  M  N  L  N  L  F  L  V  F  A  V  Q  F  L  L  F  M  K  M  T  F  I  T  Q  S  F  H  L  K  E  D  I  G  L  T  L  I  G  W  *  S  V  *  R  I  E  T  H  S  :  V  M  L  H  L  I  *  F  T  L  I  M  S  T  M  R  L  L  *  P  L  G  V  *  I  W  L  K  K  V  I  I  K  S  *  W  I  I  S  L  G  S  R  C  L  M  V  G  M  C  I  M  G  C  *  R  Q  Q  F  G  C  *  I  K  N  P  R  L  *  K  G  F  G  L  R  M  G  R  V  T  G  *  Y  L  L  D  I  L  W  V  L  E  L  H  H  C  *  L  *  L  R  R  I  T  G  I  D  *  G  V  S  Q  G  V  H  S  V  A  M  L  L  L  L  L  G  V  C  H  S  I  W  L  L  N  M  L  M  L  S  T  Q  W  F  C  R :   M  I  S  Y  H  E  L  P  P  P  W  K  I  Y  S  N  P  S  S   : V  Y  H  A  C  Y  F  W  C  A  *  E  I  P  S  Y  Q  K  V  G  N  S  E  I  Q  E  D  Y  M  H  L  V  E  C  I  T  L  L  K  E  N  F  A   : D  V  G  D  S  L  Q  M  L  E  L  P  S  Q  L  M  E  D  L  S  I  L  C  C  H  A  M  Q  H  L  I  T  E  L  F  G  Y  K  E  N  Q  R  R  R  *  R :   D  S  R  R  L  Q  V  L  R  H  R  Q  L  H  H  R  C  R  E  L  K  G  S  I  P  *  K  K  N  T  R  K  H  *  K  E  L  S  L  *  I  F  H  T  P  C  Q  Q  T  Q  M  R  N  Y  R  Y  T  K  R  T  T  Q  G  E  E  *  Q  R  R  L  F  L  *  K  M  H  P  Q  V  Q  A  I  P  P  M  Q  E  L  T  G  T  M  *  L  R  S  F  S  R  K  M  K  R  G  S  *  H  *  T  K  K  Q  V  V  V  L  N  D  N  P  L  *  R  C  S  L  S  L  L  I  F  F  F  L  S  N  F  F  L  *  W  L  K  K  S  I  I  L  V  Q  L  F  V  H  F  S  Y  V  K  Q  Y  I  *  I  R  M  F  N  F  *  S  P  K  E  G  N  I  E  T  E  R  N  E  K  W  L  *  L  H  F  Y  L  F  C  L  *  N  V  F  A  *  F  L  L   </first_frame>
            <second_frame>  A  L  G  V  E  T  L  Y  L  H  R  Q  *  *  Q  C  H  V  A  S  S  N  L  *  *  I  *  T  Y  S  S  S  L  P  Y  N  S  C  C  L  *  R  *  P  S  *  P  K  V  S  T  *  R  R  I  *  A  *  R  *  L  G  G  E  A  C  D  V  S  R  H  T  R :   *  C  S  T  L  F  D  L  P  *  S  *  A  P  *  D  C  C  S  H  *  G  F  K  F  G  *  R  K  *  L  *  S  L  D  G  *  *  A  W  E  A  D  V  *  W  W  V  C  A  S  W  V  V  E  G  S  N  L  D  V  E  *  R  I  R  D  F  E  K  A  L  G  *  E  W  E  E  L  Q  D  D  I  C  W  T  F  F  G  F  W  S  C  I  I  V  D  Y  N  C  G  E  S  R  G  *  I  R  G  Y  P  K  E  F  T  P  L  L  C  C  C  S  C  *  V  Y  V  T  Q  F  G  C  *  I  C  *  C  Y  P  L  S  G  F  A   : G  *  F  L  T  T  N  S  H  P  P  G  R  Y  I  Q  I  R  L  L  :  F  T  M  L  V  I  F  G  V  L  E  R  Y  L  H  T  R  R  *  E  T  Q  R  S  K  K  I  I  C  T  W  S  N  V  S  R  C  *  K  K  I  L  Q  :  M  W  E  I  P  S  R  C  *  N  C  H  P  S  *  W  K  I  *  A  Y  C  A  V  M  Q  C  N  I  *  S  R  N  Y  L  D  T  K  R  I  R  E  G  V  S   : E  T  Q  G  G  Y  K  C  *  G  T  D  S  S  T  T  G  A  E  N  *  K  A  A  Y  P  R  K  R  T  Q  E  S  T  R  K  S  C  H  F  E  Y  S  T  R  R  A  N  R  H  R  *  G  T  I  G  T  Q  R  G  R  L  R  A  R  S  N  R  D  G  F  S  Y  R  R  C  I  H  K  Y  K  P  F  H  R  C  K  N  *  L  E  R  C  S  *  E  A  F  R  A  R  *  N  G  E  V  D  I  E  Q  R  S  K  L  *  Y  *  M  T  T  L  F  E  G  A  L  S  L  F  L  F  F  F  F  F  Q  I  F  F  C  D  G  *  R  K  V  L  F  L  F  N  Y  L  Y  I  F  L  M  *  N  N  I  Y  E  L  E  C  S  I  S  K  A  P  K  R  G  I  *  K  Q  K  E  M  K  S  G  C  N  C  I  F  I  C  F  V  C  E  M  F  L  H  S  F  C  S  </second_frame>
            <third_frame>   R  W  V  W  K  R  C  T  Y  I  G  N  D  D  S  A  T  W  P  P  A  T  Y  D  E  F  E  P  I  P  R  L  C  R  T  I  L  A  V  Y  E  D  D  L  H  N  P  K  F  P  P  E  G  G  Y  R  L  N  A  D  W  V  V  K  R  V  T  Y  R  D  T  L   : G  N  A  P  P  Y  L  I  Y  L  D  H  E  H  H  E  I  V  V  A  I  R  G  L  N  L  V  K  E  S  D  Y  K  V  L  M  D  N  K  L  G  K  Q  M  F  D  G  G  Y  V  H  H  G  L  L  K  A  A  I  W  M  L  N  K  E  S  E  T  L  K  R  L  W  V  E  N  G  K  S  Y  R  M  I  F  V  G  H  S  L  G  S  G  V  A  S  L  L  T  I  I  A  A  N  H  G  D  R  L  G  G  I  P  R  S  S  L  R  C  Y  A  V  A  P  A  R  C  M  S  L  N  L  A  V  K  Y  A  D  V  I  H  S  V  V  L  Q  :  D  D  F  L  P  R  T  P  T  P  L  E  D  I  F  K  S  V  F  C :   L  P  C  L  L  F  L  V  C  L  R  D  T  F  I  P  E  G  R  K  L  R  D  P  R  R  L  Y  A  P  G  R  M  Y  H  V  V  E  R  K  F  C  R :   C  G  R  F  P  P  D  V  R  T  A  I  P  V  D  G  R  F  E  H  I  V  L  S  C  N  A  T  S  D  H  G  I  I  W  I  Q  R  E  S  E  K  A  L  A  :  R  L  K  E  A  T  S  A  E  A  P  T  A  P  P  P  V  Q  R  I  E  R  Q  H  T  L  E  K  E  H  K  K  A  L  E  R  A  V  T  L  N  I  P  H  A  V  P  T  D  T  D  E  E  L  S  V  H  K  E  D  D  S  G  R  G  V  T  E  T  A  F  L  I  E  D  A  S  T  S  T  S  H  S  T  D  A  R  T  N  W  N  D  V  V  E  K  L  F  A  Q  D  E  T  G  K  L  T  L  N  K  E  A  S  C  S  T  E  *  Q  P  S  L  K  V  L  S  L  S  S  Y  F  F  F  S  F  K  F  F  F  V  M  V  E  E  K  Y  Y  S  C  S  I  I  C  T  F  F  L  C  K  T  I  Y  M  N  *  N  V  Q  F  L  K  P  Q  R  G  E  Y  R  N  R  K  K  *  K  V  V  V  I  A  F  L  F  V  L  F  V  K  C  F  C  I  V  F  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52367" stop="52583"/>
                    <exon start="53532" stop="53965"/>
                    <exon start="55496" stop="55554"/>
                    <exon start="55688" stop="55816"/>
                    <exon start="57764" stop="57899"/>
                    <exon start="58674" stop="59027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWVWKRCTYIGNDDSATWPPATYDEFEPIPRLCRTILAVYEDDLHNPKFPPEGGYRLNADWVVKRVTYRDTLGNAPPYLIYLDHEHHEIVVAIRGLNLVKESDYKVLMDNKLGKQMFDGGYVHHGLLKAAIWMLNKESETLKRLWVENGKSYRMIFVGHSLGSGVASLLTIIAANHGDRLGGIPRSSLRCYAVAPARCMSLNLAVKYADVIHSVVLQDDFLPRTPTPLEDIFKSVFCLPCLLFLVCLRDTFIPEGRKLRDPRRLYAPGRMYHVVERKFCRCGRFPPDVRTAIPVDGRFEHIVLSCNATSDHGIIWIQRESEKALARLKEATSAEAPTAPPPVQRIERQHTLEKEHKKALERAVTLNIPHAVPTDTDEELSVHKEDDSGRGVTETAFLIEDASTSTSHSTDARTNWNDVVEKLFAQDETGKLTLNKEASCSTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="65637" PGL_stop="60272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65637" e_stop="65443"/>
            <exon e_start="64625" e_stop="64375"/>
            <exon e_start="62969" e_stop="62823"/>
            <exon e_start="62737" e_stop="62669"/>
            <exon e_start="61407" e_stop="61223"/>
            <exon e_start="61031" e_stop="60981"/>
            <exon e_start="60784" e_stop="60272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.202" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.365" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65637" e_stop="65443" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.202" acc_prob="0.974">
            <gDNA_intron_boundary i_start="65442" i_stop="64626" i_length="817"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64625" e_stop="64375" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.365">
            <gDNA_intron_boundary i_start="64374" i_stop="62970" i_length="1405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62969" e_stop="62823" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.858" acc_prob="0.900">
            <gDNA_intron_boundary i_start="62822" i_stop="62738" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62737" e_stop="62669" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62668" i_stop="61408" i_length="1261"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61407" e_stop="61223" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61222" i_stop="61032" i_length="191"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61031" e_stop="60981" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60980" i_stop="60785" i_length="196"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="60784" e_stop="60272" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65637" stop="65443"/>
              <exon start="64625" stop="64375"/>
              <exon start="62969" stop="62823"/>
              <exon start="62737" stop="62669"/>
              <exon start="61407" stop="61317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65637" stop="65443"/>
              <exon start="64625" stop="64375"/>
              <exon start="62969" stop="62853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65634" stop="65443"/>
              <exon start="64625" stop="64375"/>
              <exon start="62969" stop="62823"/>
              <exon start="62737" stop="62669"/>
              <exon start="61407" stop="61300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65630" stop="65443"/>
              <exon start="64625" stop="64375"/>
              <exon start="62969" stop="62936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65630" stop="65443"/>
              <exon start="64625" stop="64380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65586" stop="65443"/>
              <exon start="64625" stop="64375"/>
              <exon start="62969" stop="62923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65581" stop="65443"/>
              <exon start="64625" stop="64458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61381" stop="61223"/>
              <exon start="61031" stop="60981"/>
              <exon start="60784" stop="60539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61241" stop="61223"/>
              <exon start="61031" stop="60981"/>
              <exon start="60784" stop="60393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61240" stop="61223"/>
              <exon start="61031" stop="60981"/>
              <exon start="60784" stop="60508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61004" stop="60981"/>
              <exon start="60784" stop="60395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60681" stop="60272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCAATTCCCTTTTGTTCTCTGAAACCCTAACAACATTTTTTCTTCTCTCGATCAAAAAATCTTCTCATCAATGGAGATTGTATCTTAAATCCTGAAAATTTCTTCATAATTACTCGTTCTCTTGTATTTCTCACCATATCCAGCGAAAAGTTGCAGATTTGTACGTTCGTGGCATGTTTCTGCATATATTG : ATTGGCTTTAGCTGAAATTTTCCTAGTCTGCTTACATCATCATGGCTTCACTGGATATGACCCTGGATGATATGATAAAAAGTCGGAGAAATACTGAGAGGGGTGGTAGGGGTCAAGGCAGGGCCCGACGCGGAAGAGGGGCAGGGGGTTCATTTAGAGGTGGATCATTTAGAGGTGGAAGGACAACAGGGGCTCCTCGTAGAGGGCCACTTGGCGTGAATGCTCGGCCATCAGCCTACACCATTGCCAAG : ACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGG : GAACTCTTTTCGGAGATGGGAGAACTAGTACGATTTGCAATCCACTATGACAAAAATGGACGTCCAAGT : GGCGCTGCTGAGGTGGTCTTTGCCAGAAGAAGTGATGCATTCCAAGCTCTTAAGAGATATAACAATGTGCAGTTGGATGGGAAGCCTATGAAGATTGAAATAGTTGGTTCCAACCCAGAAATTCCTTTGTCAGCTCGTGTAAATGTAGTTGGAGGAACCAACCGGAGGAGGACTGTGGTTATGGC : GCCAGGTGGTCCAGCTCGTGGAAGAGGAGCTGCTACTAGTCGTGGTTCTAG : TCAAAGGGGCCGTGGTGGTTTGAGGAATGCACCTGGACGTGGTCGAGGTGGTGGTGGCGGTCGTGGTTGGGGTAGAGGTCGTGGCCGCGGTGGTAGGGGAAGTAGCAGCAGGGGCGCTGATAAGTCAGCTGAGGATCTTGACAAGGAACTGGACAGCTACCACGCCAACGCTGACGCCATGCAAACTTAGATATGGCGCTTCCATAACTTGTGAGTTAACTAGAAGAACCAATCATGTCTACTATGTCTCTGTATCACGTCACCAAAACTCATGCTTTCCAGTTGTAGTTTCTTGCCGTTTATATGATTGTACGATAAATCGATCATTTGATGAATGCTTTTTAATCCCCTAATGAACGTATCGTAAATAGAGTGGTTTATTTGTCTTCCCCATCTTCCTATGCAACTGTAGTTCTGCTTAAATTATGCATAAGGTAATTAGATTGTTCAATTGTACTCACATCCATTTGAGGTGATAAAGTTCATTGAGTGAAAACTTTATATTGCAAAACA</gDNA_template>
            <first_frame> F  S  N  S  L  L  F  S  E  T  L  T  T  F  F  L  L  S  I  K  K  S  S  H  Q  W  R  L  Y  L  K  S  *  K  F  L  H  N  Y  S  F  S  C  I  S  H  H  I  Q  R  K  V  A  D  L  Y  V  R  G  M  F  L  H  I  L  :  I  G  F  S  *  N  F  P  S  L  L  T  S  S  W  L  H  W  I  *  P  W  M  I  *  *  K  V  G  E  I  L  R  G  V  V  G  V  K  A  G  P  D  A  E  E  G  Q  G  V  H  L  E  V  D  H  L  E  V  E  G  Q  Q  G  L  L  V  E  G  H  L  A  *  M  L  G  H  Q  P  T  P  L  P  R :   L  S  A  E  P  R  I  C  H  G  R  M  V  C  L  K  I  A  L  E  L  Q  D  C  H  Q  Y  W  R  V  A  Q  S  Y  M  F  L  I  *  T  L  E  *  L  M  K  I  *  G :   N  S  F  R  R  W  E  N  *  Y  D  L  Q  S  T  M  T  K  M  D  V  Q  V :   A  L  L  R  W  S  L  P  E  E  V  M  H  S  K  L  L  R  D  I  T  M  C  S  W  M  G  S  L  *  R  L  K  *  L  V  P  T  Q  K  F  L  C  Q  L  V  *  M  *  L  E  E  P  T  G  G  G  L  W  L  W   : R  Q  V  V  Q  L  V  E  E  E  L  L  L  V  V  V  L   : V  K  G  A  V  V  V  *  G  M  H  L  D  V  V  E  V  V  V  A  V  V  V  G  V  E  V  V  A  A  V  V  G  E  V  A  A  G  A  L  I  S  Q  L  R  I  L  T  R  N  W  T  A  T  T  P  T  L  T  P  C  K  L  R  Y  G  A  S  I  T  C  E  L  T  R  R  T  N  H  V  Y  Y  V  S  V  S  R  H  Q  N  S  C  F  P  V  V  V  S  C  R  L  Y  D  C  T  I  N  R  S  F  D  E  C  F  L  I  P  *  *  T  Y  R  K  *  S  G  L  F  V  F  P  I  F  L  C  N  C  S  S  A  *  I  M  H  K  V  I  R  L  F  N  C  T  H  I  H  L  R  *  *  S  S  L  S  E  N  F  I  L  Q  N  </first_frame>
            <second_frame>  S  P  I  P  F  C  S  L  K  P  *  Q  H  F  F  F  S  R  S  K  N  L  L  I  N  G  D  C  I  L  N  P  E  N  F  F  I  I  T  R  S  L  V  F  L  T  I  S  S  E  K  L  Q  I  C  T  F  V  A  C  F  C  I  Y  * :   L  A  L  A  E  I  F  L  V  C  L  H  H  H  G  F  T  G  Y  D  P  G  *  Y  D  K  K  S  E  K  Y  *  E  G  W  *  G  S  R  Q  G  P  T  R  K  R  G  R  G  F  I  *  R  W  I  I  *  R  W  K  D  N  R  G  S  S  *  R  A  T  W  R  E  C  S  A  I  S  L  H  H  C  Q   : D  F  P  Q  N  Q  E  F  A  M  A  E  W  F  V  *  R  *  P  *  S  C  R  T  V  I  S  I  G  E  W  H  K  V  I  C  F  *  F  R  R  W  S  D  *  *  R  Y  K   : G  T  L  F  G  D  G  R  T  S  T  I  C  N  P  L  *  Q  K  W  T  S  K   : W  R  C  *  G  G  L  C  Q  K  K  *  C  I  P  S  S  *  E  I  *  Q  C  A  V  G  W  E  A  Y  E  D  *  N  S  W  F  Q  P  R  N  S  F  V  S  S  C  K  C  S  W  R  N  Q  P  E  E  D  C  G  Y  G  :  A  R  W  S  S  S  W  K  R  S  C  Y  *  S  W  F  *  :  S  K  G  P  W  W  F  E  E  C  T  W  T  W  S  R  W  W  W  R  S  W  L  G  *  R  S  W  P  R  W  *  G  K  *  Q  Q  G  R  *  *  V  S  *  G  S  *  Q  G  T  G  Q  L  P  R  Q  R  *  R  H  A  N  L  D  M  A  L  P  *  L  V  S  *  L  E  E  P  I  M  S  T  M  S  L  Y  H  V  T  K  T  H  A  F  Q  L  *  F  L  A  V  Y  M  I  V  R  *  I  D  H  L  M  N  A  F  *  S  P  N  E  R  I  V  N  R  V  V  Y  L  S  S  P  S  S  Y  A  T  V  V  L  L  K  L  C  I  R  *  L  D  C  S  I  V  L  T  S  I  *  G  D  K  V  H  *  V  K  T  L  Y  C  K  T </second_frame>
            <third_frame>   L  Q  F  P  F  V  L  *  N  P  N  N  I  F  S  S  L  D  Q  K  I  F  S  S  M  E  I  V  S  *  I  L  K  I  S  S  *  L  L  V  L  L  Y  F  S  P  Y  P  A  K  S  C  R  F  V  R  S  W  H  V  S  A  Y  I   : D  W  L  *  L  K  F  S  *  S  A  Y  I  I  M  A  S  L  D  M  T  L  D  D  M  I  K  S  R  R  N  T  E  R  G  G  R  G  Q  G  R  A  R  R  G  R  G  A  G  G  S  F  R  G  G  S  F  R  G  G  R  T  T  G  A  P  R  R  G  P  L  G  V  N  A  R  P  S  A  Y  T  I  A  K  :  T  F  R  R  T  K  N  L  P  W  Q  N  G  L  F  E  D  S  L  R  A  A  G  L  S  S  V  L  E  S  G  T  K  L  Y  V  S  N  L  D  V  G  V  T  N  E  D  I  R  :  E  L  F  S  E  M  G  E  L  V  R  F  A  I  H  Y  D  K  N  G  R  P  S  :  G  A  A  E  V  V  F  A  R  R  S  D  A  F  Q  A  L  K  R  Y  N  N  V  Q  L  D  G  K  P  M  K  I  E  I  V  G  S  N  P  E  I  P  L  S  A  R  V  N  V  V  G  G  T  N  R  R  R  T  V  V  M  A :   P  G  G  P  A  R  G  R  G  A  A  T  S  R  G  S  S :   Q  R  G  R  G  G  L  R  N  A  P  G  R  G  R  G  G  G  G  G  R  G  W  G  R  G  R  G  R  G  G  R  G  S  S  S  R  G  A  D  K  S  A  E  D  L  D  K  E  L  D  S  Y  H  A  N  A  D  A  M  Q  T  *  I  W  R  F  H  N  L  *  V  N  *  K  N  Q  S  C  L  L  C  L  C  I  T  S  P  K  L  M  L  S  S  C  S  F  L  P  F  I  *  L  Y  D  K  S  I  I  *  *  M  L  F  N  P  L  M  N  V  S  *  I  E  W  F  I  C  L  P  H  L  P  M  Q  L  *  F  C  L  N  Y  A  *  G  N  *  I  V  Q  L  Y  S  H  P  F  E  V  I  K  F  I  E  *  K  L  Y  I  A  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64599" stop="64375"/>
                    <exon start="62969" stop="62823"/>
                    <exon start="62737" stop="62669"/>
                    <exon start="61407" stop="61223"/>
                    <exon start="61031" stop="60981"/>
                    <exon start="60784" stop="60595"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAYIIMASLDMTLDDMIKSRRNTERGGRGQGRARRGRGAGGSFRGGSFRGGRTTGAPRRGPLGVNARPSAYTIAKTFRRTKNLPWQNGLFEDSLRAAGLSSVLESGTKLYVSNLDVGVTNEDIRELFSEMGELVRFAIHYDKNGRPSGAAEVVFARRSDAFQALKRYNNVQLDGKPMKIEIVGSNPEIPLSARVNVVGGTNRRRTVVMAPGGPARGRGAATSRGSSQRGRGGLRNAPGRGRGGGGGRGWGRGRGRGGRGSSSRGADKSAEDLDKELDSYHANADAMQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63647" e_stop="62790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="63647" e_stop="62790" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63647" stop="62790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCAACTGTAACAATTGTTGATGATCTTTGAACTTTCTCCTTGCTAGAGGTTTGCTGATGGATTTTGATTTAAGTGGGAGATTCAGATGGCCCTATTCAGGCAAATCACTTCCCTGTAGCATGCTTCTTGGGGAGATTCGTTAACTGGAAATTTAAGAGCCTTCACACCATTTAAACATCCTACCCCCTAATGTATAGAGATTAGAGGGAACTTTCTTAACCGTCTGTTATCCTTATTGTTTAGTAGCAATCACTCTAGTTTTCTCATTATTGGTTTAAAGAGGGAGTTTGTGGCTGTCTTCATGAATTCTACTTGCATTTTGTGGAACTGCTAAGGGACAAGATCTTCTGTTACCATCTCATTTCAAGGCATTTTTGCAAAGGTGGCTTCATTTGAACATCAGAACTGGAGCTCTTACCTTTTTGCTTAAGTACCTGATGTGCAGTGGGTCAATTCCTTTTAACTCCCATCTACACTTAATTCTGCATCGTTGACTTCTCTTTTGCTATTAGATTGCATTTTTTTGAGCAATTCAACTTAACTGGAAACTACGTAGTGCGATGAAACTTTGATGAAATGATCTACTGTCGAAGAATGGTGAATTTATCTAATTGTTTGGTAGCATGCTGACTTTTGCTTTCACACCTGTTAATCTTTCCGGCATGCTTGCTTCAGACTTTCCGCAGAACCAAGAATTTGCCATGGCAGAATGGTTTGTTTGAAGATAGCCTTAGAGCTGCAGGACTGTCATCAGTATTGGAGAGTGGCACAAAGTTATATGTTTCTAATTTAGACGTTGGAGTGACTAATGAAGATATAAGGGTACACCTTGAGCTTGTCTTCTCACATTATACC</gDNA_template>
            <first_frame> V  P  T  V  T  I  V  D  D  L  *  T  F  S  L  L  E  V  C  *  W  I  L  I  *  V  G  D  S  D  G  P  I  Q  A  N  H  F  P  V  A  C  F  L  G  R  F  V  N  W  K  F  K  S  L  H  T  I  *  T  S  Y  P  L  M  Y  R  D  *  R  E  L  S  *  P  S  V  I  L  I  V  *  *  Q  S  L  *  F  S  H  Y  W  F  K  E  G  V  C  G  C  L  H  E  F  Y  L  H  F  V  E  L  L  R  D  K  I  F  C  Y  H  L  I  S  R  H  F  C  K  G  G  F  I  *  T  S  E  L  E  L  L  P  F  C  L  S  T  *  C  A  V  G  Q  F  L  L  T  P  I  Y  T  *  F  C  I  V  D  F  S  F  A  I  R  L  H  F  F  E  Q  F  N  L  T  G  N  Y  V  V  R  *  N  F  D  E  M  I  Y  C  R  R  M  V  N  L  S  N  C  L  V  A  C  *  L  L  L  S  H  L  L  I  F  P  A  C  L  L  Q  T  F  R  R  T  K  N  L  P  W  Q  N  G  L  F  E  D  S  L  R  A  A  G  L  S  S  V  L  E  S  G  T  K  L  Y  V  S  N  L  D  V  G  V  T  N  E  D  I  R  V  H  L  E  L  V  F  S  H  Y  T </first_frame>
            <second_frame>  F  Q  L  *  Q  L  L  M  I  F  E  L  S  P  C  *  R  F  A  D  G  F  *  F  K  W  E  I  Q  M  A  L  F  R  Q  I  T  S  L  *  H  A  S  W  G  D  S  L  T  G  N  L  R  A  F  T  P  F  K  H  P  T  P  *  C  I  E  I  R  G  N  F  L  N  R  L  L  S  L  L  F  S  S  N  H  S  S  F  L  I  I  G  L  K  R  E  F  V  A  V  F  M  N  S  T  C  I  L  W  N  C  *  G  T  R  S  S  V  T  I  S  F  Q  G  I  F  A  K  V  A  S  F  E  H  Q  N  W  S  S  Y  L  F  A  *  V  P  D  V  Q  W  V  N  S  F  *  L  P  S  T  L  N  S  A  S  L  T  S  L  L  L  L  D  C  I  F  L  S  N  S  T  *  L  E  T  T  *  C  D  E  T  L  M  K  *  S  T  V  E  E  W  *  I  Y  L  I  V  W  *  H  A  D  F  C  F  H  T  C  *  S  F  R  H  A  C  F  R  L  S  A  E  P  R  I  C  H  G  R  M  V  C  L  K  I  A  L  E  L  Q  D  C  H  Q  Y  W  R  V  A  Q  S  Y  M  F  L  I  *  T  L  E  *  L  M  K  I  *  G  Y  T  L  S  L  S  S  H  I  I   </second_frame>
            <third_frame>   S  N  C  N  N  C  *  *  S  L  N  F  L  L  A  R  G  L  L  M  D  F  D  L  S  G  R  F  R  W  P  Y  S  G  K  S  L  P  C  S  M  L  L  G  E  I  R  *  L  E  I  *  E  P  S  H  H  L  N  I  L  P  P  N  V  *  R  L  E  G  T  F  L  T  V  C  Y  P  Y  C  L  V  A  I  T  L  V  F  S  L  L  V  *  R  G  S  L  W  L  S  S  *  I  L  L  A  F  C  G  T  A  K  G  Q  D  L  L  L  P  S  H  F  K  A  F  L  Q  R  W  L  H  L  N  I  R  T  G  A  L  T  F  L  L  K  Y  L  M  C  S  G  S  I  P  F  N  S  H  L  H  L  I  L  H  R  *  L  L  F  C  Y  *  I  A  F  F  *  A  I  Q  L  N  W  K  L  R  S  A  M  K  L  *  *  N  D  L  L  S  K  N  G  E  F  I  *  L  F  G  S  M  L  T  F  A  F  T  P  V  N  L  S  G  M  L  A  S  D  F  P  Q  N  Q  E  F  A  M  A  E  W  F  V  *  R  *  P  *  S  C  R  T  V  I  S  I  G  E  W  H  K  V  I  C  F  *  F  R  R  W  S  D  *  *  R  Y  K  G  T  P  *  A  C  L  L  T  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63014" stop="62790"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLSHLLIFPACLLQTFRRTKNLPWQNGLFEDSLRAAGLSSVLESGTKLYVSNLDVGVTNEDIRVHLELVFSHYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="72149" PGL_stop="66753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72149" e_stop="72113"/>
            <exon e_start="70156" e_stop="70096"/>
            <exon e_start="68569" e_stop="68429"/>
            <exon e_start="67368" e_stop="66753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.771" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72149" e_stop="72113" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.771" acc_prob="0.942">
            <gDNA_intron_boundary i_start="72112" i_stop="70157" i_length="1956"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70156" e_stop="70096" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68569" e_stop="68429" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67368" e_stop="66753" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72149" stop="72113"/>
              <exon start="70156" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70156" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70141" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70141" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="67150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70128" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70128" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70127" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67363" stop="66834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67324" stop="66753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67208" stop="66753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATCTGTGCTTTCGTTGCGTGTTTCTACATATATTG : GATTTTTGAACTCAGACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC : GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG : ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</gDNA_template>
            <first_frame> R  S  V  L  S  L  R  V  S  T  Y  I   : G  F  L  N  S  D  F  S  S  *  R  N  R  E  Y  S  F  H  *  Q  T :   *  F  V  *  L  *  W  G  V  D  W  E  E  E  L  *  T  S  Q  I  F  Q  L  N  F  S  C  L  P  L  S  P  T  S  L  R  S  P  S  K  P  S  P  L  L  P  R :   L  R  *  K  G  F  W  S  L  S  T  V  L  K  L  K  R  S  K  P  L  T  W  M  E  R  R  K  R  E  V  G  C  *  L  L  N  Q  T  T  K  K  L  M  L  L  L  G  I  H  Y  L  Y  R  P  T  F  S  L  S  E  *  S  K  R  K  R  R  I  *  A  R  N  P  S  L  A  L  L  R  M  M  N  L  R  R  R  I  G  L  T  R  R  K  M  E  G  I  G  Q  R  *  D  L  V  V  A  V  T  I  V  V  D  S  V  Q  M  L  A  A  I  V  V  E  K  V  V  M  L  A  L  H  Q  Q  S  F  L  G  A  V  *  G  L  M  L  L  G  R  S  L  L  N  F  Y  C  A  *  V  D  Y  L  S  L  Q  N  N  *  I  L  Y  Q  W  L  L  W  I  I  G  I  V  F  S  P  I  I  I  G  C  C  *  F  T  S  N  K  L  Y  G  V  L  C  F  F  L  Q </first_frame>
            <second_frame>  D  L  C  F  R  C  V  F  L  H  I  L  :  D  F  *  T  Q  T  S  P  A  E  E  I  E  N  T  V  F  T  D  K   : R  D  S  Y  N  C  D  G  E  *  I  G  K  K  S  C  E  L  R  K  S  S  N  *  T  S  H  A  F  L  F  L  Q  H  H  *  D  L  P  Q  N  H  P  L  C  F  Q   : D  *  D  K  K  G  F  G  V  S  L  R  F  *  S  *  K  G  P  N  P  *  H  G  W  K  E  E  K  E  R  W  A  V  N  C  *  T  R  L  Q  K  S  L  C  Y  S  *  E  S  I  I  Y  I  A  R  P  F  P  Y  R  S  D  P  R  G  K  E  E  Y  E  Q  E  I  Q  V  *  H  C  *  G  *  *  T  *  E  D  A  L  A  *  R  E  E  R  W  K  E  S  V  R  D  E  I  W  S  W  P  *  P  S  *  W  T  A  F  R  C  W  P  R  S  W  W  R  K  S  *  C  W  R  C  T  S  K  V  S  L  E  Q  Y  E  V  L  C  S  *  V  D  H  Y  *  I  F  I  V  P  K  *  I  I  F  L  F  R  I  I  E  F  C  I  N  G  C  F  G  S  L  A  L  C  L  V  P  L  *  S  D  A  A  S  L  L  P  T  S  Y  M  E  F  Y  V  F  F  F   </second_frame>
            <third_frame>   I  C  A  F  V  A  C  F  Y  I  Y  W :   I  F  E  L  R  L  L  Q  L  K  K  *  R  I  Q  F  S  L  T  N  :  V  I  R  I  I  V  M  G  S  R  L  G  R  R  V  V  N  F  A  N  L  P  I  K  L  L  M  P  S  S  F  S  N  I  T  E  I  S  L  K  T  I  P  S  A  S  K  :  I  E  I  K  R  V  L  E  S  L  Y  G  F  E  V  E  K  V  Q  T  L  N  M  D  G  K  K  K  K  R  G  G  L  L  I  A  K  P  D  Y  K  K  A  Y  V  T  L  R  N  P  L  S  I  S  P  D  L  F  P  I  G  V  I  Q  E  E  K  K  N  M  S  K  K  S  K  S  S  I  V  E  D  D  E  P  K  K  T  H  W  L  D  E  K  K  D  G  R  N  R  S  E  M  R  F  G  R  G  R  D  H  R  S  G  Q  R  S  D  V  G  R  D  R  G  G  E  S  R  D  V  G  A  A  P  A  K  F  P  W  S  S  M  R  S  Y  A  P  R  *  I  I  I  E  F  L  L  C  L  S  R  L  S  F  S  S  E  *  L  N  F  V  S  M  V  A  L  D  H  W  H  C  V  *  S  H  Y  N  R  M  L  L  V  Y  F  Q  Q  V  I  W  S  S  M  F  F  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70119" stop="70096"/>
                    <exon start="68569" stop="68429"/>
                    <exon start="67368" stop="66925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQFSLTNVIRIIVMGSRLGRRVVNFANLPIKLLMPSSFSNITEISLKTIPSASKIEIKRVLESLYGFEVEKVQTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDLFPIGVIQEEKKNMSKKSKSSIVEDDEPKKTHWLDEKKDGRNRSEMRFGRGRDHRSGQRSDVGRDRGGESRDVGAAPAKFPWSSMRSYAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70969" e_stop="70333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="70969" e_stop="70333" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70969" stop="70333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCATGGGGAGTATTTTGCTGGCAAGGAATTGAAAAAAAAATCAACTTTGCTGCTTTGGGTCTCTCTATTTTACCCACAAAACTCAATGGTGAATGGCTAATCAGAAAAATAGAAAATTGTGGGAACCATAAACTAGGAAAAGCACAACCCTTCAATTGTTCTTATTTCCCCAATTCTTTGATACACTTCTGAAATTTTCATGGCATATCTTGTGATAGACTTCTGAATTTGTTTTAGAATACTATTTCATTTTCTTTTCCCTTTTTTTCCCTTATGGTGTATGAAAATAACACATTATGCAATTTTTATGTTAGACAGCTTAATTAGTATTGGAAGTATTATATTTCATGTCAAATTAAAGAAAATTCAAGTTTATATCCTCCTGCTTGTGCGACTTCTATGTTGTTGAAGTTTGTAAAAAAGAGCCTGTTCAATAGGTGAGTGAAAAATAATTCAACAAGAAAGAACAGTTTCTTAATTTGTAGAACAAACTAAAGTAGCTTAGTATAAAGAGCGACAATGTCTTTTTCACGAAAGCCTTGTTTACTAAAGAGGCAGCTAGCTTGAGGAATTATCAAAAAATCCAAAAAGTTAACCTAATTTATCAACCACATATATGCTTGTCCCTGGCATAT</gDNA_template>
            <first_frame> V  H  G  E  Y  F  A  G  K  E  L  K  K  K  S  T  L  L  L  W  V  S  L  F  Y  P  Q  N  S  M  V  N  G  *  S  E  K  *  K  I  V  G  T  I  N  *  E  K  H  N  P  S  I  V  L  I  S  P  I  L  *  Y  T  S  E  I  F  M  A  Y  L  V  I  D  F  *  I  C  F  R  I  L  F  H  F  L  F  P  F  F  P  L  W  C  M  K  I  T  H  Y  A  I  F  M  L  D  S  L  I  S  I  G  S  I  I  F  H  V  K  L  K  K  I  Q  V  Y  I  L  L  L  V  R  L  L  C  C  *  S  L  *  K  R  A  C  S  I  G  E  *  K  I  I  Q  Q  E  R  T  V  S  *  F  V  E  Q  T  K  V  A  *  Y  K  E  R  Q  C  L  F  H  E  S  L  V  Y  *  R  G  S  *  L  E  E  L  S  K  N  P  K  S  *  P  N  L  S  T  T  Y  M  L  V  P  G  I  </first_frame>
            <second_frame>  C  M  G  S  I  L  L  A  R  N  *  K  K  N  Q  L  C  C  F  G  S  L  Y  F  T  H  K  T  Q  W  *  M  A  N  Q  K  N  R  K  L  W  E  P  *  T  R  K  S  T  T  L  Q  L  F  L  F  P  Q  F  F  D  T  L  L  K  F  S  W  H  I  L  *  *  T  S  E  F  V  L  E  Y  Y  F  I  F  F  S  L  F  F  P  Y  G  V  *  K  *  H  I  M  Q  F  L  C  *  T  A  *  L  V  L  E  V  L  Y  F  M  S  N  *  R  K  F  K  F  I  S  S  C  L  C  D  F  Y  V  V  E  V  C  K  K  E  P  V  Q  *  V  S  E  K  *  F  N  K  K  E  Q  F  L  N  L  *  N  K  L  K  *  L  S  I  K  S  D  N  V  F  F  T  K  A  L  F  T  K  E  A  A  S  L  R  N  Y  Q  K  I  Q  K  V  N  L  I  Y  Q  P  H  I  C  L  S  L  A  Y </second_frame>
            <third_frame>   A  W  G  V  F  C  W  Q  G  I  E  K  K  I  N  F  A  A  L  G  L  S  I  L  P  T  K  L  N  G  E  W  L  I  R  K  I  E  N  C  G  N  H  K  L  G  K  A  Q  P  F  N  C  S  Y  F  P  N  S  L  I  H  F  *  N  F  H  G  I  S  C  D  R  L  L  N  L  F  *  N  T  I  S  F  S  F  P  F  F  S  L  M  V  Y  E  N  N  T  L  C  N  F  Y  V  R  Q  L  N  *  Y  W  K  Y  Y  I  S  C  Q  I  K  E  N  S  S  L  Y  P  P  A  C  A  T  S  M  L  L  K  F  V  K  K  S  L  F  N  R  *  V  K  N  N  S  T  R  K  N  S  F  L  I  C  R  T  N  *  S  S  L  V  *  R  A  T  M  S  F  S  R  K  P  C  L  L  K  R  Q  L  A  *  G  I  I  K  K  S  K  K  L  T  *  F  I  N  H  I  Y  A  C  P  W  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0027B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="66783" PGL_stop="66959"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66783" e_stop="66959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="66783" e_stop="66959" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66783" stop="66959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTGGAAGTAAACTAGCAGCATCCGATTATAATGGGACTAAACACAATGCCAATGATCCAAAGCAACCATTGATACAAAATTCAATTATTCTGAAGAGAAAGATAATCTACTTAGGCACAATAAAAATTCAATAATGATCTACCTAGGAGCATAAGACCTCATACTGCTCCAAG</gDNA_template>
            <first_frame> L  V  G  S  K  L  A  A  S  D  Y  N  G  T  K  H  N  A  N  D  P  K  Q  P  L  I  Q  N  S  I  I  L  K  R  K  I  I  Y  L  G  T  I  K  I  Q  *  *  S  T  *  E  H  K  T  S  Y  C  S  K </first_frame>
            <second_frame>  L  L  E  V  N  *  Q  H  P  I  I  M  G  L  N  T  M  P  M  I  Q  S  N  H  *  Y  K  I  Q  L  F  *  R  E  R  *  S  T  *  A  Q  *  K  F  N  N  D  L  P  R  S  I  R  P  H  T  A  P   </second_frame>
            <third_frame>   C  W  K  *  T  S  S  I  R  L  *  W  D  *  T  Q  C  Q  *  S  K  A  T  I  D  T  K  F  N  Y  S  E  E  K  D  N  L  L  R  H  N  K  N  S  I  M  I  Y  L  G  A  *  D  L  I  L  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0027B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="73958" PGL_stop="76579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73958" e_stop="74097"/>
            <exon e_start="75912" e_stop="75986"/>
            <exon e_start="76127" e_stop="76251"/>
            <exon e_start="76443" e_stop="76579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.685" e_score="0.914"/>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="0.960"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.960"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="73958" e_stop="74097" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.685">
            <gDNA_intron_boundary i_start="74098" i_stop="75911" i_length="1814"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="75912" e_stop="75986" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75987" i_stop="76126" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="76127" e_stop="76251" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76252" i_stop="76442" i_length="191"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="76443" e_stop="76579" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73958" stop="74097"/>
              <exon start="75912" stop="75986"/>
              <exon start="76127" stop="76251"/>
              <exon start="76443" stop="76579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCCTTCCCGGGTTTTGGGTATTTCATAGGTTTCAACCGTACCAGATAGCTCGCGCCTCTTCTGATTATGCTTTAGCTAAATTCATCGAAAAAAAATGCGAACCAGAAATCAGGCAAAGCGACAGAATCAATCAACTG : CAAGTGAAGACTCTTTGAAACACTATGGTGAGAAAGAGAGCCAAAGCGGCTGCAAAGACGAAGCCAGTGGCAATG : AAACTCTGGCAAACATATCTCGAGGTGCAGTGGGGAAACTTCTGAAACGAGTCAACAAGTCACGTGGCTCTCGGGGTCTGAAAACAGATGATAGTTACCTACGCAAACAGGATACCATCGTCGAG : CCAGAGAATGGATCAAGTGAGGCAGAAAAGCAGCTTACTGGTACTACAGTTGTAAGGACTACATTAGATGCTAAATGCTGCACTACAGATGTGTTACAAAATGTGCCATCGGAAGTGGAACATGGAAGTACAGATGT</gDNA_template>
            <first_frame> S  S  F  P  G  F  G  Y  F  I  G  F  N  R  T  R  *  L  A  P  L  L  I  M  L  *  L  N  S  S  K  K  N  A  N  Q  K  S  G  K  A  T  E  S  I  N  C :   K  *  R  L  F  E  T  L  W  *  E  R  E  P  K  R  L  Q  R  R  S  Q  W  Q  * :   N  S  G  K  H  I  S  R  C  S  G  E  T  S  E  T  S  Q  Q  V  T  W  L  S  G  S  E  N  R  *  *  L  P  T  Q  T  G  Y  H  R  R   : A  R  E  W  I  K  *  G  R  K  A  A  Y  W  Y  Y  S  C  K  D  Y  I  R  C  *  M  L  H  Y  R  C  V  T  K  C  A  I  G  S  G  T  W  K  Y  R  C </first_frame>
            <second_frame>  P  P  S  R  V  L  G  I  S  *  V  S  T  V  P  D  S  S  R  L  F  *  L  C  F  S  *  I  H  R  K  K  M  R  T  R  N  Q  A  K  R  Q  N  Q  S  T   : A  S  E  D  S  L  K  H  Y  G  E  K  E  S  Q  S  G  C  K  D  E  A  S  G  N   : E  T  L  A  N  I  S  R  G  A  V  G  K  L  L  K  R  V  N  K  S  R  G  S  R  G  L  K  T  D  D  S  Y  L  R  K  Q  D  T  I  V  E  :  P  E  N  G  S  S  E  A  E  K  Q  L  T  G  T  T  V  V  R  T  T  L  D  A  K  C  C  T  T  D  V  L  Q  N  V  P  S  E  V  E  H  G  S  T  D   </second_frame>
            <third_frame>   L  L  P  G  F  W  V  F  H  R  F  Q  P  Y  Q  I  A  R  A  S  S  D  Y  A  L  A  K  F  I  E  K  K  C  E  P  E  I  R  Q  S  D  R  I  N  Q  L  :  Q  V  K  T  L  *  N  T  M  V  R  K  R  A  K  A  A  A  K  T  K  P  V  A  M  :  K  L  W  Q  T  Y  L  E  V  Q  W  G  N  F  *  N  E  S  T  S  H  V  A  L  G  V  *  K  Q  M  I  V  T  Y  A  N  R  I  P  S  S  S :   Q  R  M  D  Q  V  R  Q  K  S  S  L  L  V  L  Q  L  *  G  L  H  *  M  L  N  A  A  L  Q  M  C  Y  K  M  C  H  R  K  W  N  M  E  V  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74040" stop="74097"/>
                    <exon start="75912" stop="75986"/>
                    <exon start="76127" stop="76251"/>
                    <exon start="76443" stop="76577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHRKKMRTRNQAKRQNQSTASEDSLKHYGEKESQSGCKDEASGNETLANISRGAVGKLLKRVNKSRGSRGLKTDDSYLRKQDTIVEPENGSSEAEKQLTGTTVVRTTLDAKCCTTDVLQNVPSEVEHGSTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="76592" PGL_stop="80306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76592" e_stop="76766"/>
            <exon e_start="76864" e_stop="76956"/>
            <exon e_start="77356" e_stop="77448"/>
            <exon e_start="77532" e_stop="77633"/>
            <exon e_start="79234" e_stop="79283"/>
            <exon e_start="79985" e_stop="80306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.946" e_score="0.977"/>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="76592" e_stop="76766" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76767" i_stop="76863" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76864" e_stop="76956" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76957" i_stop="77355" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77356" e_stop="77448" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77449" i_stop="77531" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77532" e_stop="77633" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77634" i_stop="79233" i_length="1600"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79234" e_stop="79283" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="79284" i_stop="79984" i_length="701"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79985" e_stop="80306" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76592" stop="76766"/>
              <exon start="76864" stop="76956"/>
              <exon start="77356" stop="77448"/>
              <exon start="77532" stop="77633"/>
              <exon start="79234" stop="79283"/>
              <exon start="79985" stop="80306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76593" stop="76766"/>
              <exon start="76864" stop="76956"/>
              <exon start="77356" stop="77448"/>
              <exon start="77532" stop="77633"/>
              <exon start="79234" stop="79283"/>
              <exon start="79985" stop="80299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGAGAGGGAAGATGAACTTGATGGTATTGATTGGGAAGATGGGCCAGTTGATACTTTGAAGTCTGAAAGCAATGTTAAGGAAGATACAATCAATGGTGTGACTGTTGAGTTTGATGCTCCGCCTGATCCTAGTAAACAGAAGACAGTACGCCGAGCAACTGCACAAGAAAAG : GAATTGGCTGAGCTTGTGCATAAGGTTAACTTGCTTTGTTTACTAGCAAGGGGCAGGTTTGTAGATAGCGCTTGCAATGATCCTCTTATCCAG : GCTTCGTTACTTTCACTGCTGCCTGCACATCTGCTGAAGTTGACCGATGCTCCAAAACTTACTGCAAAGGCACTAGCTCCTCTTGTCAATTGG : ATCCATAGTCATTTCCGTGTTAGAGGTGCAAATGATATGGAGAAGCCATTTCATTCAGCTTTGGCATCAACTCTCGAGTCCCAGGAAGGGACCCCAGAAGAG : GTTGCTGCATTATCTGTGGCCCTGTTTAGGGCCTTGAATCTTACGACCAG : GTTCGTATCAATCTTGGATGTGGCTTCTTTGAAGCCTGAAATTGAGAAATCATATCCCTCTGGTAAAGGCCCTAGTAAGGCTGGTAGTGGGATATTTAGCTCTTCAACATTGATGGTGGCTGGACCAAAGTGTTCTCCTCTCTCTCCTGCTAAATCTATGGCTTATGGCAAGCACAATGTTTCTGATAAGACTTCAACATCTGCTGGCCAAGCTACCAATGACAAGTCTAGAGAAACTATTACAGATAAGTCTAATAAAAGAATGTCAGCATCGACATCAGATGCTCAGGGTGATTCTAATGATGCATGTATTAAAAAAAAA</gDNA_template>
            <first_frame> Y  *  E  G  R  *  T  *  W  Y  *  L  G  R  W  A  S  *  Y  F  E  V  *  K  Q  C  *  G  R  Y  N  Q  W  C  D  C  *  V  *  C  S  A  *  S  *  *  T  E  D  S  T  P  S  N  C  T  R  K   : G  I  G  *  A  C  A  *  G  *  L  A  L  F  T  S  K  G  Q  V  C  R  *  R  L  Q  *  S  S  Y  P   : G  F  V  T  F  T  A  A  C  T  S  A  E  V  D  R  C  S  K  T  Y  C  K  G  T  S  S  S  C  Q  L   : D  P  *  S  F  P  C  *  R  C  K  *  Y  G  E  A  I  S  F  S  F  G  I  N  S  R  V  P  G  R  D  P  R  R   : G  C  C  I  I  C  G  P  V  *  G  L  E  S  Y  D  Q  :  V  R  I  N  L  G  C  G  F  F  E  A  *  N  *  E  I  I  S  L  W  *  R  P  *  *  G  W  *  W  D  I  *  L  F  N  I  D  G  G  W  T  K  V  F  S  S  L  S  C  *  I  Y  G  L  W  Q  A  Q  C  F  *  *  D  F  N  I  C  W  P  S  Y  Q  *  Q  V  *  R  N  Y  Y  R  *  V  *  *  K  N  V  S  I  D  I  R  C  S  G  *  F  *  *  C  M  Y  *  K  K  </first_frame>
            <second_frame>  I  E  R  E  D  E  L  D  G  I  D  W  E  D  G  P  V  D  T  L  K  S  E  S  N  V  K  E  D  T  I  N  G  V  T  V  E  F  D  A  P  P  D  P  S  K  Q  K  T  V  R  R  A  T  A  Q  E  K  :  E  L  A  E  L  V  H  K  V  N  L  L  C  L  L  A  R  G  R  F  V  D  S  A  C  N  D  P  L  I  Q  :  A  S  L  L  S  L  L  P  A  H  L  L  K  L  T  D  A  P  K  L  T  A  K  A  L  A  P  L  V  N  W  :  I  H  S  H  F  R  V  R  G  A  N  D  M  E  K  P  F  H  S  A  L  A  S  T  L  E  S  Q  E  G  T  P  E  E  :  V  A  A  L  S  V  A  L  F  R  A  L  N  L  T  T  R :   F  V  S  I  L  D  V  A  S  L  K  P  E  I  E  K  S  Y  P  S  G  K  G  P  S  K  A  G  S  G  I  F  S  S  S  T  L  M  V  A  G  P  K  C  S  P  L  S  P  A  K  S  M  A  Y  G  K  H  N  V  S  D  K  T  S  T  S  A  G  Q  A  T  N  D  K  S  R  E  T  I  T  D  K  S  N  K  R  M  S  A  S  T  S  D  A  Q  G  D  S  N  D  A  C  I  K  K  K </second_frame>
            <third_frame>   L  R  G  K  M  N  L  M  V  L  I  G  K  M  G  Q  L  I  L  *  S  L  K  A  M  L  R  K  I  Q  S  M  V  *  L  L  S  L  M  L  R  L  I  L  V  N  R  R  Q  Y  A  E  Q  L  H  K  K  R :   N  W  L  S  L  C  I  R  L  T  C  F  V  Y  *  Q  G  A  G  L  *  I  A  L  A  M  I  L  L  S  R :   L  R  Y  F  H  C  C  L  H  I  C  *  S  *  P  M  L  Q  N  L  L  Q  R  H  *  L  L  L  S  I  G :   S  I  V  I  S  V  L  E  V  Q  M  I  W  R  S  H  F  I  Q  L  W  H  Q  L  S  S  P  R  K  G  P  Q  K  R :   L  L  H  Y  L  W  P  C  L  G  P  *  I  L  R  P   : G  S  Y  Q  S  W  M  W  L  L  *  S  L  K  L  R  N  H  I  P  L  V  K  A  L  V  R  L  V  V  G  Y  L  A  L  Q  H  *  W  W  L  D  Q  S  V  L  L  S  L  L  L  N  L  W  L  M  A  S  T  M  F  L  I  R  L  Q  H  L  L  A  K  L  P  M  T  S  L  E  K  L  L  Q  I  S  L  I  K  E  C  Q  H  R  H  Q  M  L  R  V  I  L  M  M  H  V  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76593" stop="76766"/>
                    <exon start="76864" stop="76956"/>
                    <exon start="77356" stop="77448"/>
                    <exon start="77532" stop="77633"/>
                    <exon start="79234" stop="79283"/>
                    <exon start="79985" stop="80306"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEREDELDGIDWEDGPVDTLKSESNVKEDTINGVTVEFDAPPDPSKQKTVRRATAQEKELAELVHKVNLLCLLARGRFVDSACNDPLIQASLLSLLPAHLLKLTDAPKLTAKALAPLVNWIHSHFRVRGANDMEKPFHSALASTLESQEGTPEEVAALSVALFRALNLTTRFVSILDVASLKPEIEKSYPSGKGPSKAGSGIFSSSTLMVAGPKCSPLSPAKSMAYGKHNVSDKTSTSAGQATNDKSRETITDKSNKRMSASTSDAQGDSNDACIKKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83362" PGL_stop="87042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83362" e_stop="83442"/>
            <exon e_start="83638" e_stop="84193"/>
            <exon e_start="87024" e_stop="87042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.914"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="83362" e_stop="83442" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="83443" i_stop="83637" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83638" e_stop="84193" e_length="556"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84194" i_stop="87023" i_length="2830"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="87024" e_stop="87042" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83362" stop="83442"/>
              <exon start="83638" stop="84193"/>
              <exon start="87024" stop="87042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAATTCCGAAATGGTCGATCTCTACCTGTTTATGAGGGGATTGTGGTGTGTACCGAGTTCAAGGATGCAATTCTTGAG : GCATATGCAGAAGAAGAGGTGAGAAGAGAGGCCAAAGAGCGGAGGAGGACTGAAGCAGAAGCTCTTTCTAGGTGGTATCAGCTTCTTTCATCACTTATTACCCGACAGAGGCTGCACAATTGTTACGTAGACGGGGCATCCTCACAATCAGCAGTCAATATTGCAACATCCAACGATAAATCCTCCTTACTAGCTGGTGGCAGTGAGAACACGAGGAGCGCTCGTCAAGAAAAATCTGAGATAGCCAAATCTAATAGTCCACCATTTGTACTTGCAGAAAACCATGAGCATGTTTTCTTTGTAGAAGATCAGACTGTTGATGAAGAAAGTTCAACAAGGACGAAACGATGTCGTTGTGGCTTTTCAGTTCAATATGAGGAGTTGTAGAGCTTTAAATCTCTCAATTTTAGTATGAGAAATTAGAGAACTTTTTATTCTCATGCAAAGTTGGGTTGTAAGTTGAAGTTGATAGAAATACTAATGTATGATTGTATGTAACATCAGATCATGACAACAATCTGTCTTTTTGTATAATATCGGTTTGGGATGAGCTTAA : AAAAAAAAAACAAAAAAAA</gDNA_template>
            <first_frame> F  E  F  R  N  G  R  S  L  P  V  Y  E  G  I  V  V  C  T  E  F  K  D  A  I  L  E  :  A  Y  A  E  E  E  V  R  R  E  A  K  E  R  R  R  T  E  A  E  A  L  S  R  W  Y  Q  L  L  S  S  L  I  T  R  Q  R  L  H  N  C  Y  V  D  G  A  S  S  Q  S  A  V  N  I  A  T  S  N  D  K  S  S  L  L  A  G  G  S  E  N  T  R  S  A  R  Q  E  K  S  E  I  A  K  S  N  S  P  P  F  V  L  A  E  N  H  E  H  V  F  F  V  E  D  Q  T  V  D  E  E  S  S  T  R  T  K  R  C  R  C  G  F  S  V  Q  Y  E  E  L  *  S  F  K  S  L  N  F  S  M  R  N  *  R  T  F  Y  S  H  A  K  L  G  C  K  L  K  L  I  E  I  L  M  Y  D  C  M  *  H  Q  I  M  T  T  I  C  L  F  V  *  Y  R  F  G  M  S  L   : K  K  K  N  K  K   </first_frame>
            <second_frame>  L  N  S  E  M  V  D  L  Y  L  F  M  R  G  L  W  C  V  P  S  S  R  M  Q  F  L  R :   H  M  Q  K  K  R  *  E  E  R  P  K  S  G  G  G  L  K  Q  K  L  F  L  G  G  I  S  F  F  H  H  L  L  P  D  R  G  C  T  I  V  T  *  T  G  H  P  H  N  Q  Q  S  I  L  Q  H  P  T  I  N  P  P  Y  *  L  V  A  V  R  T  R  G  A  L  V  K  K  N  L  R  *  P  N  L  I  V  H  H  L  Y  L  Q  K  T  M  S  M  F  S  L  *  K  I  R  L  L  M  K  K  V  Q  Q  G  R  N  D  V  V  V  A  F  Q  F  N  M  R  S  C  R  A  L  N  L  S  I  L  V  *  E  I  R  E  L  F  I  L  M  Q  S  W  V  V  S  *  S  *  *  K  Y  *  C  M  I  V  C  N  I  R  S  *  Q  Q  S  V  F  L  Y  N  I  G  L  G  *  A  *  :  K  K  K  T  K  K  </second_frame>
            <third_frame>   *  I  P  K  W  S  I  S  T  C  L  *  G  D  C  G  V  Y  R  V  Q  G  C  N  S  *   : G  I  C  R  R  R  G  E  K  R  G  Q  R  A  E  E  D  *  S  R  S  S  F  *  V  V  S  A  S  F  I  T  Y  Y  P  T  E  A  A  Q  L  L  R  R  R  G  I  L  T  I  S  S  Q  Y  C  N  I  Q  R  *  I  L  L  T  S  W  W  Q  *  E  H  E  E  R  S  S  R  K  I  *  D  S  Q  I  *  *  S  T  I  C  T  C  R  K  P  *  A  C  F  L  C  R  R  S  D  C  *  *  R  K  F  N  K  D  E  T  M  S  L  W  L  F  S  S  I  *  G  V  V  E  L  *  I  S  Q  F  *  Y  E  K  L  E  N  F  L  F  S  C  K  V  G  L  *  V  E  V  D  R  N  T  N  V  *  L  Y  V  T  S  D  H  D  N  N  L  S  F  C  I  I  S  V  W  D  E  L  K :   K  K  K  Q  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83362" stop="83442"/>
                    <exon start="83638" stop="84024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEFRNGRSLPVYEGIVVCTEFKDAILEAYAEEEVRREAKERRRTEAEALSRWYQLLSSLITRQRLHNCYVDGASSQSAVNIATSNDKSSLLAGGSENTRSARQEKSEIAKSNSPPFVLAENHEHVFFVEDQTVDEESSTRTKRCRCGFSVQYEEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="87564" PGL_stop="85713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87564" e_stop="87449"/>
            <exon e_start="86487" e_stop="85713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87564" e_stop="87449" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87448" i_stop="86488" i_length="961"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86487" e_stop="85713" e_length="775"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87564" stop="87449"/>
              <exon start="86487" stop="86012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87563" stop="87449"/>
              <exon start="86487" stop="86113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87560" stop="87449"/>
              <exon start="86487" stop="86119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87554" stop="87449"/>
              <exon start="86487" stop="86112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87494" stop="87449"/>
              <exon start="86487" stop="85875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87494" stop="87449"/>
              <exon start="86487" stop="85977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87494" stop="87449"/>
              <exon start="86487" stop="86120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87493" stop="87449"/>
              <exon start="86487" stop="86064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87468" stop="87449"/>
              <exon start="86487" stop="86305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86395" stop="86109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86282" stop="85738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86282" stop="85758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86274" stop="85877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86201" stop="85713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86201" stop="85773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAAGATTCATCCTGAATACCCTCAG : ATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTGAATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAAAACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATATTGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAGCTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCAGACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTTTTAAGTTTTCTTGGTTGATGTTGTAGTTGTAAGGGGTTGTGTTTCTTCTAGCTGTGTAATGTAGATTGTTAGGAGATCCTGTACTTGTTTTAATGCTTGTTGATTCGCGATTCACAGTAGATAGGGAAGTTGAGCCACAGCCAGCACAGAATGGTGTAAAGTGAAGCTGAAGATTTGTTGACTTTGTTGATGGTGATGACTCTCAATGACTGTGTTATGTCTCAAGTTTTTCTTGGTTGATGTTGTATTTGTAGTGATTTGTGTGTAATTCTTGTAGCTG</gDNA_template>
            <first_frame> V  L  T  L  S  L  S  L  H  L  F  V  G  T  F  L  S  F  S  L  C  K  F  Q  W  L  L  N  L  S  T  R  F  I  L  N  T  L  R :   *  F  M  K  P  L  M  H  C  N  K  K  K  A  Q  T  S  H  Q  Y  Q  S  T  L  N  L  S  M  E  T  *  M  M  H  T  Q  S  *  *  L  T  I  W  I  E  *  N  K  L  V  N  L  F  S  *  K  T  T  T  L  N  L  V  Q  M  H  P  L  S  V  A  A  A  D  H  L  N  P  N  L  Y  C  H  K  E  Q  I  L  Q  L  Q  S  Q  E  V  A  R  K  K  T  P  M  H  H  L  L  P  R  N  Q  N  Q  Q  V  S  L  V  T  *  L  L  F  R  K  P  E  G  L  E  V  G  L  G  R  L  G  R  S  H  H  K  M  V  *  S  E  A  E  N  P  Q  T  W  L  M  V  T  T  F  I  T  L  L  C  F  *  V  F  L  V  D  V  V  V  V  R  G  C  V  S  S  S  C  V  M  *  I  V  R  R  S  C  T  C  F  N  A  C  *  F  A  I  H  S  R  *  G  S  *  A  T  A  S  T  E  W  C  K  V  K  L  K  I  C  *  L  C  *  W  *  *  L  S  M  T  V  L  C  L  K  F  F  L  V  D  V  V  F  V  V  I  C  V  *  F  L  *  L </first_frame>
            <second_frame>  S  S  L  S  L  S  L  S  I  S  L  W  G  H  F  S  L  S  L  S  A  S  F  N  G  Y  *  I  C  Q  Q  D  S  S  *  I  P  S   : D  D  L  *  S  P  *  C  I  A  T  K  R  R  L  K  Q  V  I  N  I  K  V  H  *  I  *  V  W  K  H  E  *  C  T  L  K  V  D  N  L  P  F  G  *  N  E  T  N  W  *  T  Y  F  P  K  K  Q  L  H  *  T  W  S  R  C  T  P  *  A  W  P  R  P  T  T  *  T  Q  T  Y  I  A  T  R  N  R  Y  C  S  S  K  A  K  R  S  P  E  K  R  P  Q  C  T  T  Y  S  Q  E  T  K  T  N  K  C  P  *  *  L  S  S  C  F  E  N  R  K  A  *  R  *  A  *  E  D  *  A  A  A  T  T  K  W  F  R  V  K  L  K  I  R  R  L  G  *  W  *  R  L  L  *  L  C  C  V  F  K  F  S  W  L  M  L  *  L  *  G  V  V  F  L  L  A  V  *  C  R  L  L  G  D  P  V  L  V  L  M  L  V  D  S  R  F  T  V  D  R  E  V  E  P  Q  P  A  Q  N  G  V  K  *  S  *  R  F  V  D  F  V  D  G  D  D  S  Q  *  L  C  Y  V  S  S  F  S  W  L  M  L  Y  L  *  *  F  V  C  N  S  C  S   </second_frame>
            <third_frame>   P  H  S  L  S  L  S  P  S  L  C  G  D  I  S  L  F  L  S  L  Q  V  S  M  A  T  E  F  V  N  K  I  H  P  E  Y  P  Q  :  M  I  Y  E  A  L  D  A  L  Q  Q  K  E  G  S  N  K  S  S  I  S  K  Y  I  E  S  K  Y  G  N  M  N  D  A  H  S  K  L  I  T  Y  H  L  D  R  M  K  Q  T  G  E  L  I  F  L  K  N  N  Y  I  K  P  G  P  D  A  P  P  K  R  G  R  G  R  P  P  K  P  K  P  I  L  P  Q  G  T  D  I  A  A  P  K  P  R  G  R  P  K  K  D  P  N  A  P  P  T  P  K  K  P  K  P  T  S  V  P  S  D  L  A  P  V  S  K  T  G  R  P  R  G  R  P  R  K  I  R  P  Q  P  P  Q  N  G  L  E  *  S  *  K  S  A  D  L  V  D  G  D  D  F  Y  N  S  V  V  F  L  S  F  L  G  *  C  C  S  C  K  G  L  C  F  F  *  L  C  N  V  D  C  *  E  I  L  Y  L  F  *  C  L  L  I  R  D  S  Q  *  I  G  K  L  S  H  S  Q  H  R  M  V  *  S  E  A  E  D  L  L  T  L  L  M  V  M  T  L  N  D  C  V  M  S  Q  V  F  L  G  *  C  C  I  C  S  D  L  C  V  I  L  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87562" stop="87449"/>
                    <exon start="86487" stop="86050"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSLSPSLCGDISLFLSLQVSMATEFVNKIHPEYPQMIYEALDALQQKEGSNKSSISKYIESKYGNMNDAHSKLITYHLDRMKQTGELIFLKNNYIKPGPDAPPKRGRGRPPKPKPILPQGTDIAAPKPRGRPKKDPNAPPTPKKPKPTSVPSDLAPVSKTGRPRGRPRKIRPQPPQNGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="94319" PGL_stop="88098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94319" e_stop="94277"/>
            <exon e_start="92922" e_stop="92557"/>
            <exon e_start="92359" e_stop="92219"/>
            <exon e_start="91508" e_stop="91435"/>
            <exon e_start="91192" e_stop="91116"/>
            <exon e_start="91041" e_stop="90970"/>
            <exon e_start="90206" e_stop="90138"/>
            <exon e_start="89983" e_stop="89937"/>
            <exon e_start="89823" e_stop="89709"/>
            <exon e_start="89626" e_stop="89558"/>
            <exon e_start="89444" e_stop="89341"/>
            <exon e_start="88695" e_stop="88620"/>
            <exon e_start="88512" e_stop="88098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.597" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94319" e_stop="94277" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="94276" i_stop="92923" i_length="1354"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92922" e_stop="92557" e_length="366"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92359" e_stop="92219" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91508" e_stop="91435" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91192" e_stop="91116" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.597">
            <gDNA_intron_boundary i_start="91115" i_stop="91042" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91041" e_stop="90970" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90206" e_stop="90138" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89983" e_stop="89937" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.754">
            <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89823" e_stop="89709" e_length="115"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89626" e_stop="89558" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.966">
            <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="89444" e_stop="89341" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="88695" e_stop="88620" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="88512" e_stop="88098" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94319" stop="94277"/>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92219"/>
              <exon start="91508" stop="91460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94314" stop="94277"/>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92219"/>
              <exon start="91508" stop="91435"/>
              <exon start="91192" stop="91161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94314" stop="94277"/>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91500" stop="91435"/>
              <exon start="91192" stop="91116"/>
              <exon start="91041" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91014" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89956" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89956" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89755" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88486" stop="88129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCCACCCCCTCTCTCTCTCTCTCTCTACTCTGTAGCAAAG : GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG : TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG : GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG : CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACT : ATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG : GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG : TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT : GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG : GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG : CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG : GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG : AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAAATATATT</gDNA_template>
            <first_frame> N  P  T  P  S  L  S  L  S  L  L  C  S  K   : G  F  R  L  M  L  C  *  I  L  F  R  L  S  G  N  S  W  E  F  C  F  W  L  V  R  S  C  R  *  P  W  L  P  Q  M  G  S  F  I  I  L  L  N  H  L  N  T  Q  R  F  T  P  T  V  K  G  L  N  I  A  N  T  T  D  I  L  I  C  Q  D  *  S  F  L  I  R  G  S  G  R  H  A  E  N  *  A  T  V  S  S  S  G  D  L  L  C  Y  V  S  Q  Q  K  H  A  T  L  R  Q  S  V  P  E  T  V  M  I  V  P  I  Y  L   : V  Y  K  K  M  I  K  Q  P  Q  L  G  K  L  F  L  Q  V  R  Q  L  Q  K  L  V  N  L  L  T  T  M  P  N  L  *  M  K  G  R  R  M  I  L  C  C  F  L   : G  K  *  *  E  W  M  P  V  R  A  K  M  L  H  F  L  V  Q  S  F  L  S  L  M  :  L  G  H  G  K  I  L  R  K  L  I  T  M  *  R  K  E  P  K  E  S  S  M  L  P  L :   F  L  K  T  *  L  K  R  D  *  R  K  L  L  I  D  T  G  A  M  V  P  W  R :   L  I  *  D  V  P  I  L  W  Q  N  S  V  Q  W  R  I  L  *  W  L  W  S :   L  S  R  T  F  M  I  G  W  *  A  R  C  A  N   : *  K  E  V  P  S  I  R  R  K  Q  G  I  L  L  *  R  R  M  G  K  L  W  S  F  F  L  G  K  F  Q  L  I  A  S  L  L  S  R :   K  H  I  G  I  *  H  L  H  F  P  K  L  M  E  L  T  I  L  I  Q  K  S :   S  S  C  W  *  Q  R  L  *  I  L  M  Q  W  M  V  K  V  V  Y  P  C  W  P  S  V  Q  V  L  L  M  *  T  Q   : G  K  H  *  Q  M  H  L  Q  L  H  R  P  C  G  L  *  E  T  L  A  W  E  R  Y  R :   D  *  Q  K  M  T  T  L  P  L  Q  L  L  H  L  K  P  F  L  N  *  K  D  N  G  K  *  E  R  E  I  A  G  G  S  W  W  T  K  C  H  Q  G  M  *  G  V  K  M  T  T  M  G  H  I  R  R  C  P  *  L  N  T  V  D  I  *  M  K  G  L  I  D  I  R  P  V  K  K  K  I  V  H  K  L  Y  L  H  *  K  K  K  C  Q  T  D  F  I  L  S  C  Y  V  T  C  L  Y  L  W  I  I  D  I  F  I  N  V  *  K  V  *  S  N  T  L  F  F  L  Y  T  K  Q  I  S  D  K  Y  I </first_frame>
            <second_frame>  T  P  P  P  L  S  L  S  L  Y  S  V  A  K  :  V  F  G  *  C  F  V  K  Y  F  F  V  S  P  E  T  A  G  N  F  A  F  G  L  Y  D  L  V  D  N  H  G  Y  P  K  W  D  H  L  L  F  C  *  I  T  S  T  P  K  G  S  H  P  Q  S  R  D  *  T  *  Q  T  Q  R  I  F  *  Y  A  K  T  E  V  F  *  *  E  V  L  G  G  M  R  K  T  K  Q  P  C  H  L  Q  G  I  S  C  V  M  S  L  N  R  N  T  R  H  *  D  R  V  C  Q  K  Q  *  *  L  F  Q  Y  I  *  :  C  T  R  K  *  S  S  N  H  S  W  E  S  Y  S  F  K  S  G  N  C  R  S  L  *  I  C  L  Q  R  C  Q  I  C  E  *  K  G  E  E  *  Y  C  A  A  F  S  :  G  N  N  E  N  G  C  P  C  A  P  R  C  C  I  S  W  F  R  V  S  *  A  *  C :   S  G  T  G  R  Y  *  E  S  *  S  Q  C  K  E  K  S  R  K  N  P  A  C  C  H   : Y  S  *  K  H  S  S  N  E  T  E  E  S  C  *  S  T  L  E  R  W  C  L  G   : G  *  F  K  T  C  R  F  C  G  K  T  A  C  N  G  G  F  S  D  G  S  G   : V  C  Q  E  H  S  *  *  D  G  E  Q  D  V  Q  I  :  E  K  K  F  H  R  Y  G  E  N  K  A  Y  Y  S  R  E  E  W  E  N  S  G  V  S  S  W  G  S  F  S  *  S  P  H  C  Y  P   : G  S  I  L  G  Y  S  I  C  T  F  R  S  *  W  N  *  L  Y  *  S  R  R   : A  R  V  V  G  S  N  A  Y  R  S  *  C  N  G  W  *  K  *  C  I  L  A  G  R  V  F  K  F  S  *  C  E  H  K  :  E  S  I  S  K  C  T  C  S  C  T  V  H  V  D  F  R  K  R  W  H  G  S  V  T   : E  T  S  R  R  *  Q  P  C  H  C  S  C  C  I  *  N  H  S  *  I  E  K  T  M  G  N  R  R  G  R  *  L  E  V  H  G  G  R  S  V  T  R  G  C  R  E  S  R  *  Q  Q  W  D  I  L  E  G  A  R  N  S  I  L  *  I  S  R  *  R  D  *  S  I  F  V  L  *  K  K  K  *  F  I  S  S  T  Y  I  R  K  K  N  A  K  L  I  S  S  F  H  A  M  *  L  V  C  I  F  G  S  L  I  F  L  S  M  Y  K  K  S  K  A  T  L  Y  S  S  Y  I  Q  S  R  F  L  I  N  I   </second_frame>
            <third_frame>   P  H  P  L  S  L  S  L  S  T  L  *  Q  R :   F  S  V  N  A  L  L  N  T  F  S  S  L  R  K  Q  L  G  I  L  L  L  A  C  T  I  L  *  I  T  M  A  T  P  N  G  I  I  Y  Y  S  A  K  S  P  Q  H  P  K  V  H  T  H  S  Q  G  T  E  H  S  K  H  N  G  Y  S  N  M  P  R  L  K  F  S  N  K  R  F  W  E  A  C  G  K  L  S  N  R  V  I  F  R  G  S  P  V  L  C  L  S  T  E  T  R  D  T  E  T  E  C  A  R  N  S  D  D  C  S  N  I  S  S :   V  Q  E  N  D  Q  A  T  T  V  G  K  V  I  P  S  S  Q  A  I  A  E  A  C  K  F  A  Y  N  D  A  K  F  V  N  E  R  A  K  N  D  I  V  L  L  S  R :   E  I  M  R  M  D  A  R  A  R  Q  D  V  A  F  L  G  S  E  F  L  K  L  D   : A  R  A  R  E  D  T  E  K  V  D  H  N  V  K  K  R  A  E  R  I  Q  H  V  A  T  :  I  L  K  N  I  A  Q  T  R  L  K  K  A  A  D  R  H  W  S  D  G  A  L  E  :  A  D  L  R  R  A  D  F  V  A  K  Q  R  A  M  E  D  S  L  M  A  L  E  :  F  V  K  N  I  H  D  R  M  V  S  K  M  C  K  L :   K  R  S  S  I  D  T  E  K  T  R  H  I  T  L  E  K  N  G  K  T  L  E  F  L  P  G  E  V  S  A  D  R  L  T  A  I  Q  :  E  A  Y  W  D  I  A  S  A  L  S  E  A  D  G  I  D  Y  T  D  P  E  E  :  L  E  L  L  V  A  T  L  I  D  L  D  A  M  D  G  K  S  S  V  S  L  L  A  E  C  S  S  S  P  D  V  N  T  R :   K  A  L  A  N  A  L  A  A  A  P  S  M  W  T  L  G  N  A  G  M  G  A  L  Q  :  R  L  A  E  D  D  N  P  A  I  A  A  A  A  S  K  T  I  L  E  L  K  R  Q  W  E  I  G  E  G  D  S  W  R  F  M  V  D  E  V  S  P  G  D  V  G  S  Q  D  D  N  N  G  T  Y  *  K  V  P  V  T  Q  Y  C  R  Y  L  D  E  G  T  N  R  Y  S  S  C  K  K  K  N  S  S  *  A  L  L  T  L  E  K  K  M  P  N  *  F  H  P  F  M  L  C  N  L  F  V  S  L  D  H  *  Y  F  Y  Q  C  I  K  S  L  K  Q  H  F  I  L  L  I  Y  K  A  D  F  *  *  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92837" stop="92557"/>
                    <exon start="92359" stop="92219"/>
                    <exon start="91508" stop="91435"/>
                    <exon start="91192" stop="91116"/>
                    <exon start="91041" stop="90970"/>
                    <exon start="90206" stop="90138"/>
                    <exon start="89983" stop="89937"/>
                    <exon start="89823" stop="89709"/>
                    <exon start="89626" stop="89558"/>
                    <exon start="89444" stop="89341"/>
                    <exon start="88695" stop="88620"/>
                    <exon start="88512" stop="88345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITMATPNGIIYYSAKSPQHPKVHTHSQGTEHSKHNGYSNMPRLKFSNKRFWEACGKLSNRVIFRGSPVLCLSTETRDTETECARNSDDCSNISSVQENDQATTVGKVIPSSQAIAEACKFAYNDAKFVNERAKNDIVLLSREIMRMDARARQDVAFLGSEFLKLDARAREDTEKVDHNVKKRAERIQHVATILKNIAQTRLKKAADRHWSDGALEADLRRADFVAKQRAMEDSLMALEFVKNIHDRMVSKMCKLKRSSIDTEKTRHITLEKNGKTLEFLPGEVSADRLTAIQEAYWDIASALSEADGIDYTDPEELELLVATLIDLDAMDGKSSVSLLAECSSSPDVNTRKALANALAAAPSMWTLGNAGMGALQRLAEDDNPAIAAAASKTILELKRQWEIGEGDSWRFMVDEVSPGDVGSQDDNNGTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94156" e_stop="94091"/>
            <exon e_start="92941" e_stop="92557"/>
            <exon e_start="92359" e_stop="92219"/>
            <exon e_start="91508" e_stop="91435"/>
            <exon e_start="91192" e_stop="91116"/>
            <exon e_start="91041" e_stop="90970"/>
            <exon e_start="90206" e_stop="90138"/>
            <exon e_start="89983" e_stop="89937"/>
            <exon e_start="89823" e_stop="89709"/>
            <exon e_start="89626" e_stop="89558"/>
            <exon e_start="89444" e_stop="89341"/>
            <exon e_start="88695" e_stop="88620"/>
            <exon e_start="88512" e_stop="88098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.597" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94156" e_stop="94091" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94090" i_stop="92942" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92941" e_stop="92557" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92359" e_stop="92219" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91508" e_stop="91435" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91192" e_stop="91116" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.597">
            <gDNA_intron_boundary i_start="91115" i_stop="91042" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91041" e_stop="90970" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90206" e_stop="90138" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89983" e_stop="89937" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.754">
            <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89823" e_stop="89709" e_length="115"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89626" e_stop="89558" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.966">
            <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="89444" e_stop="89341" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="88695" e_stop="88620" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="88512" e_stop="88098" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94156" stop="94091"/>
              <exon start="92941" stop="92557"/>
              <exon start="92359" stop="92219"/>
              <exon start="91508" stop="91435"/>
              <exon start="91192" stop="91151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94156" stop="94091"/>
              <exon start="92941" stop="92557"/>
              <exon start="92359" stop="92219"/>
              <exon start="91508" stop="91435"/>
              <exon start="91192" stop="91181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91500" stop="91435"/>
              <exon start="91192" stop="91116"/>
              <exon start="91041" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91014" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89956" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89956" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89755" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88486" stop="88129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAG : AATTTGCTTTGCCTTTCAGGTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG : TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG : GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG : CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACT : ATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG : GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG : TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT : GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG : GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG : CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG : GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG : AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAAATATATT</gDNA_template>
            <first_frame> I  L  P  R  F  H  L  Y  *  P  H  P  T  P  F  S  L  C  W  V  A  K  :  N  L  L  C  L  S  G  F  R  L  M  L  C  *  I  L  F  R  L  S  G  N  S  W  E  F  C  F  W  L  V  R  S  C  R  *  P  W  L  P  Q  M  G  S  F  I  I  L  L  N  H  L  N  T  Q  R  F  T  P  T  V  K  G  L  N  I  A  N  T  T  D  I  L  I  C  Q  D  *  S  F  L  I  R  G  S  G  R  H  A  E  N  *  A  T  V  S  S  S  G  D  L  L  C  Y  V  S  Q  Q  K  H  A  T  L  R  Q  S  V  P  E  T  V  M  I  V  P  I  Y  L   : V  Y  K  K  M  I  K  Q  P  Q  L  G  K  L  F  L  Q  V  R  Q  L  Q  K  L  V  N  L  L  T  T  M  P  N  L  *  M  K  G  R  R  M  I  L  C  C  F  L   : G  K  *  *  E  W  M  P  V  R  A  K  M  L  H  F  L  V  Q  S  F  L  S  L  M  :  L  G  H  G  K  I  L  R  K  L  I  T  M  *  R  K  E  P  K  E  S  S  M  L  P  L :   F  L  K  T  *  L  K  R  D  *  R  K  L  L  I  D  T  G  A  M  V  P  W  R :   L  I  *  D  V  P  I  L  W  Q  N  S  V  Q  W  R  I  L  *  W  L  W  S :   L  S  R  T  F  M  I  G  W  *  A  R  C  A  N   : *  K  E  V  P  S  I  R  R  K  Q  G  I  L  L  *  R  R  M  G  K  L  W  S  F  F  L  G  K  F  Q  L  I  A  S  L  L  S  R :   K  H  I  G  I  *  H  L  H  F  P  K  L  M  E  L  T  I  L  I  Q  K  S :   S  S  C  W  *  Q  R  L  *  I  L  M  Q  W  M  V  K  V  V  Y  P  C  W  P  S  V  Q  V  L  L  M  *  T  Q   : G  K  H  *  Q  M  H  L  Q  L  H  R  P  C  G  L  *  E  T  L  A  W  E  R  Y  R :   D  *  Q  K  M  T  T  L  P  L  Q  L  L  H  L  K  P  F  L  N  *  K  D  N  G  K  *  E  R  E  I  A  G  G  S  W  W  T  K  C  H  Q  G  M  *  G  V  K  M  T  T  M  G  H  I  R  R  C  P  *  L  N  T  V  D  I  *  M  K  G  L  I  D  I  R  P  V  K  K  K  I  V  H  K  L  Y  L  H  *  K  K  K  C  Q  T  D  F  I  L  S  C  Y  V  T  C  L  Y  L  W  I  I  D  I  F  I  N  V  *  K  V  *  S  N  T  L  F  F  L  Y  T  K  Q  I  S  D  K  Y  I </first_frame>
            <second_frame>  F  F  Q  D  F  I  F  T  N  P  T  P  P  P  S  L  C  A  G  *  Q  R :   I  C  F  A  F  Q  V  F  G  *  C  F  V  K  Y  F  F  V  S  P  E  T  A  G  N  F  A  F  G  L  Y  D  L  V  D  N  H  G  Y  P  K  W  D  H  L  L  F  C  *  I  T  S  T  P  K  G  S  H  P  Q  S  R  D  *  T  *  Q  T  Q  R  I  F  *  Y  A  K  T  E  V  F  *  *  E  V  L  G  G  M  R  K  T  K  Q  P  C  H  L  Q  G  I  S  C  V  M  S  L  N  R  N  T  R  H  *  D  R  V  C  Q  K  Q  *  *  L  F  Q  Y  I  *  :  C  T  R  K  *  S  S  N  H  S  W  E  S  Y  S  F  K  S  G  N  C  R  S  L  *  I  C  L  Q  R  C  Q  I  C  E  *  K  G  E  E  *  Y  C  A  A  F  S  :  G  N  N  E  N  G  C  P  C  A  P  R  C  C  I  S  W  F  R  V  S  *  A  *  C :   S  G  T  G  R  Y  *  E  S  *  S  Q  C  K  E  K  S  R  K  N  P  A  C  C  H   : Y  S  *  K  H  S  S  N  E  T  E  E  S  C  *  S  T  L  E  R  W  C  L  G   : G  *  F  K  T  C  R  F  C  G  K  T  A  C  N  G  G  F  S  D  G  S  G   : V  C  Q  E  H  S  *  *  D  G  E  Q  D  V  Q  I  :  E  K  K  F  H  R  Y  G  E  N  K  A  Y  Y  S  R  E  E  W  E  N  S  G  V  S  S  W  G  S  F  S  *  S  P  H  C  Y  P   : G  S  I  L  G  Y  S  I  C  T  F  R  S  *  W  N  *  L  Y  *  S  R  R   : A  R  V  V  G  S  N  A  Y  R  S  *  C  N  G  W  *  K  *  C  I  L  A  G  R  V  F  K  F  S  *  C  E  H  K  :  E  S  I  S  K  C  T  C  S  C  T  V  H  V  D  F  R  K  R  W  H  G  S  V  T   : E  T  S  R  R  *  Q  P  C  H  C  S  C  C  I  *  N  H  S  *  I  E  K  T  M  G  N  R  R  G  R  *  L  E  V  H  G  G  R  S  V  T  R  G  C  R  E  S  R  *  Q  Q  W  D  I  L  E  G  A  R  N  S  I  L  *  I  S  R  *  R  D  *  S  I  F  V  L  *  K  K  K  *  F  I  S  S  T  Y  I  R  K  K  N  A  K  L  I  S  S  F  H  A  M  *  L  V  C  I  F  G  S  L  I  F  L  S  M  Y  K  K  S  K  A  T  L  Y  S  S  Y  I  Q  S  R  F  L  I  N  I   </second_frame>
            <third_frame>   S  S  K  I  S  S  L  L  T  P  P  H  P  L  L  S  V  L  G  S  K   : E  F  A  L  P  F  R  F  S  V  N  A  L  L  N  T  F  S  S  L  R  K  Q  L  G  I  L  L  L  A  C  T  I  L  *  I  T  M  A  T  P  N  G  I  I  Y  Y  S  A  K  S  P  Q  H  P  K  V  H  T  H  S  Q  G  T  E  H  S  K  H  N  G  Y  S  N  M  P  R  L  K  F  S  N  K  R  F  W  E  A  C  G  K  L  S  N  R  V  I  F  R  G  S  P  V  L  C  L  S  T  E  T  R  D  T  E  T  E  C  A  R  N  S  D  D  C  S  N  I  S  S :   V  Q  E  N  D  Q  A  T  T  V  G  K  V  I  P  S  S  Q  A  I  A  E  A  C  K  F  A  Y  N  D  A  K  F  V  N  E  R  A  K  N  D  I  V  L  L  S  R :   E  I  M  R  M  D  A  R  A  R  Q  D  V  A  F  L  G  S  E  F  L  K  L  D   : A  R  A  R  E  D  T  E  K  V  D  H  N  V  K  K  R  A  E  R  I  Q  H  V  A  T  :  I  L  K  N  I  A  Q  T  R  L  K  K  A  A  D  R  H  W  S  D  G  A  L  E  :  A  D  L  R  R  A  D  F  V  A  K  Q  R  A  M  E  D  S  L  M  A  L  E  :  F  V  K  N  I  H  D  R  M  V  S  K  M  C  K  L :   K  R  S  S  I  D  T  E  K  T  R  H  I  T  L  E  K  N  G  K  T  L  E  F  L  P  G  E  V  S  A  D  R  L  T  A  I  Q  :  E  A  Y  W  D  I  A  S  A  L  S  E  A  D  G  I  D  Y  T  D  P  E  E  :  L  E  L  L  V  A  T  L  I  D  L  D  A  M  D  G  K  S  S  V  S  L  L  A  E  C  S  S  S  P  D  V  N  T  R :   K  A  L  A  N  A  L  A  A  A  P  S  M  W  T  L  G  N  A  G  M  G  A  L  Q  :  R  L  A  E  D  D  N  P  A  I  A  A  A  A  S  K  T  I  L  E  L  K  R  Q  W  E  I  G  E  G  D  S  W  R  F  M  V  D  E  V  S  P  G  D  V  G  S  Q  D  D  N  N  G  T  Y  *  K  V  P  V  T  Q  Y  C  R  Y  L  D  E  G  T  N  R  Y  S  S  C  K  K  K  N  S  S  *  A  L  L  T  L  E  K  K  M  P  N  *  F  H  P  F  M  L  C  N  L  F  V  S  L  D  H  *  Y  F  Y  Q  C  I  K  S  L  K  Q  H  F  I  L  L  I  Y  K  A  D  F  *  *  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92837" stop="92557"/>
                    <exon start="92359" stop="92219"/>
                    <exon start="91508" stop="91435"/>
                    <exon start="91192" stop="91116"/>
                    <exon start="91041" stop="90970"/>
                    <exon start="90206" stop="90138"/>
                    <exon start="89983" stop="89937"/>
                    <exon start="89823" stop="89709"/>
                    <exon start="89626" stop="89558"/>
                    <exon start="89444" stop="89341"/>
                    <exon start="88695" stop="88620"/>
                    <exon start="88512" stop="88345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITMATPNGIIYYSAKSPQHPKVHTHSQGTEHSKHNGYSNMPRLKFSNKRFWEACGKLSNRVIFRGSPVLCLSTETRDTETECARNSDDCSNISSVQENDQATTVGKVIPSSQAIAEACKFAYNDAKFVNERAKNDIVLLSREIMRMDARARQDVAFLGSEFLKLDARAREDTEKVDHNVKKRAERIQHVATILKNIAQTRLKKAADRHWSDGALEADLRRADFVAKQRAMEDSLMALEFVKNIHDRMVSKMCKLKRSSIDTEKTRHITLEKNGKTLEFLPGEVSADRLTAIQEAYWDIASALSEADGIDYTDPEELELLVATLIDLDAMDGKSSVSLLAECSSSPDVNTRKALANALAAAPSMWTLGNAGMGALQRLAEDDNPAIAAAASKTILELKRQWEIGEGDSWRFMVDEVSPGDVGSQDDNNGTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="94220" e_stop="94091"/>
            <exon e_start="92922" e_stop="92557"/>
            <exon e_start="92359" e_stop="92219"/>
            <exon e_start="91508" e_stop="91435"/>
            <exon e_start="91192" e_stop="91116"/>
            <exon e_start="91041" e_stop="90970"/>
            <exon e_start="90206" e_stop="90138"/>
            <exon e_start="89983" e_stop="89937"/>
            <exon e_start="89823" e_stop="89709"/>
            <exon e_start="89626" e_stop="89558"/>
            <exon e_start="89444" e_stop="89341"/>
            <exon e_start="88695" e_stop="88620"/>
            <exon e_start="88512" e_stop="88098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.597" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.754" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94220" e_stop="94091" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="94090" i_stop="92923" i_length="1168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92922" e_stop="92557" e_length="366"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92556" i_stop="92360" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92359" e_stop="92219" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92218" i_stop="91509" i_length="710"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91508" e_stop="91435" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91434" i_stop="91193" i_length="242"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91192" e_stop="91116" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.597">
            <gDNA_intron_boundary i_start="91115" i_stop="91042" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91041" e_stop="90970" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="90969" i_stop="90207" i_length="763"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90206" e_stop="90138" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90137" i_stop="89984" i_length="154"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89983" e_stop="89937" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.754">
            <gDNA_intron_boundary i_start="89936" i_stop="89824" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89823" e_stop="89709" e_length="115"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89708" i_stop="89627" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89626" e_stop="89558" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.966">
            <gDNA_intron_boundary i_start="89557" i_stop="89445" i_length="113"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="89444" e_stop="89341" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89340" i_stop="88696" i_length="645"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="88695" e_stop="88620" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88619" i_stop="88513" i_length="107"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="88512" e_stop="88098" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94220" stop="94091"/>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92219"/>
              <exon start="91508" stop="91435"/>
              <exon start="91192" stop="91116"/>
              <exon start="91041" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92922" stop="92557"/>
              <exon start="92359" stop="92233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91500" stop="91435"/>
              <exon start="91192" stop="91116"/>
              <exon start="91041" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91014" stop="90970"/>
              <exon start="90206" stop="90138"/>
              <exon start="89983" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89956" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89956" stop="89937"/>
              <exon start="89823" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89755" stop="89709"/>
              <exon start="89626" stop="89558"/>
              <exon start="89444" stop="89341"/>
              <exon start="88695" stop="88620"/>
              <exon start="88512" stop="88098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88486" stop="88129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAGATGAAATTATGTAGTTGCTTTGCTTTATTTAGCTTATTTTTCCATGTGGGTGTCCATCAATTCTTCCAAGATTTCATCTTTACTAACCCCACCCCACCCCCTTCTCTCTGTGCTGGGTAGCAAAG : GTTTTCGGTTAATGCTTTGTTAAATACTTTTTCGTCTCTCCGGAAACAGCTGGGAATTTTGCTTTTGGCTTGTACGATCTTGTAGATAACCATGGCTACCCCAAATGGGATCATTTATTATTCTGCTAAATCACCTCAACACCCAAAGGTTCACACCCACAGTCAAGGGACTGAACATAGCAAACACAACGGATATTCTAATATGCCAAGACTGAAGTTTTCTAATAAGAGGTTCTGGGAGGCATGCGGAAAACTAAGCAACCGTGTCATCTTCAGGGGATCTCCTGTGTTATGTCTCTCAACAGAAACACGCGACACTGAGACAGAGTGTGCCAGAAACAGTGATGATTGTTCCAATATATCTAG : TGTACAAGAAAATGATCAAGCAACCACAGTTGGGAAAGTTATTCCTTCAAGTCAGGCAATTGCAGAAGCTTGTAAATTTGCTTACAACGATGCCAAATTTGTGAATGAAAGGGCGAAGAATGATATTGTGCTGCTTTCTCG : GGAAATAATGAGAATGGATGCCCGTGCGCGCCAAGATGTTGCATTTCTTGGTTCAGAGTTTCTTAAGCTTGATG : CTCGGGCACGGGAAGATACTGAGAAAGTTGATCACAATGTAAAGAAAAGAGCCGAAAGAATCCAGCATGTTGCCACT : ATTCTTAAAAACATAGCTCAAACGAGACTGAAGAAAGCTGCTGATCGACACTGGAGCGATGGTGCCTTGGAG : GCTGATTTAAGACGTGCCGATTTTGTGGCAAAACAGCGTGCAATGGAGGATTCTCTGATGGCTCTGGAG : TTTGTCAAGAACATTCATGATAGGATGGTGAGCAAGATGTGCAAATT : GAAAAGAAGTTCCATCGATACGGAGAAAACAAGGCATATTACTCTAGAGAAGAATGGGAAAACTCTGGAGTTTCTTCCTGGGGAAGTTTCAGCTGATCGCCTCACTGCTATCCAG : GAAGCATATTGGGATATAGCATCTGCACTTTCCGAAGCTGATGGAATTGACTATACTGATCCAGAAGAG : CTCGAGTTGTTGGTAGCAACGCTTATAGATCTTGATGCAATGGATGGTAAAAGTAGTGTATCCTTGCTGGCCGAGTGTTCAAGTTCTCCTGATGTGAACACAAG : GAAAGCATTAGCAAATGCACTTGCAGCTGCACCGTCCATGTGGACTTTAGGAAACGCTGGCATGGGAGCGTTACAG : AGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTTATATACAAAGCAGATTTCTGATAAATATATT</gDNA_template>
            <first_frame> A  R  *  N  Y  V  V  A  L  L  Y  L  A  Y  F  S  M  W  V  S  I  N  S  S  K  I  S  S  L  L  T  P  P  H  P  L  L  S  V  L  G  S  K   : G  F  R  L  M  L  C  *  I  L  F  R  L  S  G  N  S  W  E  F  C  F  W  L  V  R  S  C  R  *  P  W  L  P  Q  M  G  S  F  I  I  L  L  N  H  L  N  T  Q  R  F  T  P  T  V  K  G  L  N  I  A  N  T  T  D  I  L  I  C  Q  D  *  S  F  L  I  R  G  S  G  R  H  A  E  N  *  A  T  V  S  S  S  G  D  L  L  C  Y  V  S  Q  Q  K  H  A  T  L  R  Q  S  V  P  E  T  V  M  I  V  P  I  Y  L   : V  Y  K  K  M  I  K  Q  P  Q  L  G  K  L  F  L  Q  V  R  Q  L  Q  K  L  V  N  L  L  T  T  M  P  N  L  *  M  K  G  R  R  M  I  L  C  C  F  L   : G  K  *  *  E  W  M  P  V  R  A  K  M  L  H  F  L  V  Q  S  F  L  S  L  M  :  L  G  H  G  K  I  L  R  K  L  I  T  M  *  R  K  E  P  K  E  S  S  M  L  P  L :   F  L  K  T  *  L  K  R  D  *  R  K  L  L  I  D  T  G  A  M  V  P  W  R :   L  I  *  D  V  P  I  L  W  Q  N  S  V  Q  W  R  I  L  *  W  L  W  S :   L  S  R  T  F  M  I  G  W  *  A  R  C  A  N   : *  K  E  V  P  S  I  R  R  K  Q  G  I  L  L  *  R  R  M  G  K  L  W  S  F  F  L  G  K  F  Q  L  I  A  S  L  L  S  R :   K  H  I  G  I  *  H  L  H  F  P  K  L  M  E  L  T  I  L  I  Q  K  S :   S  S  C  W  *  Q  R  L  *  I  L  M  Q  W  M  V  K  V  V  Y  P  C  W  P  S  V  Q  V  L  L  M  *  T  Q   : G  K  H  *  Q  M  H  L  Q  L  H  R  P  C  G  L  *  E  T  L  A  W  E  R  Y  R :   D  *  Q  K  M  T  T  L  P  L  Q  L  L  H  L  K  P  F  L  N  *  K  D  N  G  K  *  E  R  E  I  A  G  G  S  W  W  T  K  C  H  Q  G  M  *  G  V  K  M  T  T  M  G  H  I  R  R  C  P  *  L  N  T  V  D  I  *  M  K  G  L  I  D  I  R  P  V  K  K  K  I  V  H  K  L  Y  L  H  *  K  K  K  C  Q  T  D  F  I  L  S  C  Y  V  T  C  L  Y  L  W  I  I  D  I  F  I  N  V  *  K  V  *  S  N  T  L  F  F  L  Y  T  K  Q  I  S  D  K  Y  I </first_frame>
            <second_frame>  L  D  E  I  M  *  L  L  C  F  I  *  L  I  F  P  C  G  C  P  S  I  L  P  R  F  H  L  Y  *  P  H  P  T  P  F  S  L  C  W  V  A  K  :  V  F  G  *  C  F  V  K  Y  F  F  V  S  P  E  T  A  G  N  F  A  F  G  L  Y  D  L  V  D  N  H  G  Y  P  K  W  D  H  L  L  F  C  *  I  T  S  T  P  K  G  S  H  P  Q  S  R  D  *  T  *  Q  T  Q  R  I  F  *  Y  A  K  T  E  V  F  *  *  E  V  L  G  G  M  R  K  T  K  Q  P  C  H  L  Q  G  I  S  C  V  M  S  L  N  R  N  T  R  H  *  D  R  V  C  Q  K  Q  *  *  L  F  Q  Y  I  *  :  C  T  R  K  *  S  S  N  H  S  W  E  S  Y  S  F  K  S  G  N  C  R  S  L  *  I  C  L  Q  R  C  Q  I  C  E  *  K  G  E  E  *  Y  C  A  A  F  S  :  G  N  N  E  N  G  C  P  C  A  P  R  C  C  I  S  W  F  R  V  S  *  A  *  C :   S  G  T  G  R  Y  *  E  S  *  S  Q  C  K  E  K  S  R  K  N  P  A  C  C  H   : Y  S  *  K  H  S  S  N  E  T  E  E  S  C  *  S  T  L  E  R  W  C  L  G   : G  *  F  K  T  C  R  F  C  G  K  T  A  C  N  G  G  F  S  D  G  S  G   : V  C  Q  E  H  S  *  *  D  G  E  Q  D  V  Q  I  :  E  K  K  F  H  R  Y  G  E  N  K  A  Y  Y  S  R  E  E  W  E  N  S  G  V  S  S  W  G  S  F  S  *  S  P  H  C  Y  P   : G  S  I  L  G  Y  S  I  C  T  F  R  S  *  W  N  *  L  Y  *  S  R  R   : A  R  V  V  G  S  N  A  Y  R  S  *  C  N  G  W  *  K  *  C  I  L  A  G  R  V  F  K  F  S  *  C  E  H  K  :  E  S  I  S  K  C  T  C  S  C  T  V  H  V  D  F  R  K  R  W  H  G  S  V  T   : E  T  S  R  R  *  Q  P  C  H  C  S  C  C  I  *  N  H  S  *  I  E  K  T  M  G  N  R  R  G  R  *  L  E  V  H  G  G  R  S  V  T  R  G  C  R  E  S  R  *  Q  Q  W  D  I  L  E  G  A  R  N  S  I  L  *  I  S  R  *  R  D  *  S  I  F  V  L  *  K  K  K  *  F  I  S  S  T  Y  I  R  K  K  N  A  K  L  I  S  S  F  H  A  M  *  L  V  C  I  F  G  S  L  I  F  L  S  M  Y  K  K  S  K  A  T  L  Y  S  S  Y  I  Q  S  R  F  L  I  N  I   </second_frame>
            <third_frame>   *  M  K  L  C  S  C  F  A  L  F  S  L  F  F  H  V  G  V  H  Q  F  F  Q  D  F  I  F  T  N  P  T  P  P  P  S  L  C  A  G  *  Q  R :   F  S  V  N  A  L  L  N  T  F  S  S  L  R  K  Q  L  G  I  L  L  L  A  C  T  I  L  *  I  T  M  A  T  P  N  G  I  I  Y  Y  S  A  K  S  P  Q  H  P  K  V  H  T  H  S  Q  G  T  E  H  S  K  H  N  G  Y  S  N  M  P  R  L  K  F  S  N  K  R  F  W  E  A  C  G  K  L  S  N  R  V  I  F  R  G  S  P  V  L  C  L  S  T  E  T  R  D  T  E  T  E  C  A  R  N  S  D  D  C  S  N  I  S  S :   V  Q  E  N  D  Q  A  T  T  V  G  K  V  I  P  S  S  Q  A  I  A  E  A  C  K  F  A  Y  N  D  A  K  F  V  N  E  R  A  K  N  D  I  V  L  L  S  R :   E  I  M  R  M  D  A  R  A  R  Q  D  V  A  F  L  G  S  E  F  L  K  L  D   : A  R  A  R  E  D  T  E  K  V  D  H  N  V  K  K  R  A  E  R  I  Q  H  V  A  T  :  I  L  K  N  I  A  Q  T  R  L  K  K  A  A  D  R  H  W  S  D  G  A  L  E  :  A  D  L  R  R  A  D  F  V  A  K  Q  R  A  M  E  D  S  L  M  A  L  E  :  F  V  K  N  I  H  D  R  M  V  S  K  M  C  K  L :   K  R  S  S  I  D  T  E  K  T  R  H  I  T  L  E  K  N  G  K  T  L  E  F  L  P  G  E  V  S  A  D  R  L  T  A  I  Q  :  E  A  Y  W  D  I  A  S  A  L  S  E  A  D  G  I  D  Y  T  D  P  E  E  :  L  E  L  L  V  A  T  L  I  D  L  D  A  M  D  G  K  S  S  V  S  L  L  A  E  C  S  S  S  P  D  V  N  T  R :   K  A  L  A  N  A  L  A  A  A  P  S  M  W  T  L  G  N  A  G  M  G  A  L  Q  :  R  L  A  E  D  D  N  P  A  I  A  A  A  A  S  K  T  I  L  E  L  K  R  Q  W  E  I  G  E  G  D  S  W  R  F  M  V  D  E  V  S  P  G  D  V  G  S  Q  D  D  N  N  G  T  Y  *  K  V  P  V  T  Q  Y  C  R  Y  L  D  E  G  T  N  R  Y  S  S  C  K  K  K  N  S  S  *  A  L  L  T  L  E  K  K  M  P  N  *  F  H  P  F  M  L  C  N  L  F  V  S  L  D  H  *  Y  F  Y  Q  C  I  K  S  L  K  Q  H  F  I  L  L  I  Y  K  A  D  F  *  *  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92837" stop="92557"/>
                    <exon start="92359" stop="92219"/>
                    <exon start="91508" stop="91435"/>
                    <exon start="91192" stop="91116"/>
                    <exon start="91041" stop="90970"/>
                    <exon start="90206" stop="90138"/>
                    <exon start="89983" stop="89937"/>
                    <exon start="89823" stop="89709"/>
                    <exon start="89626" stop="89558"/>
                    <exon start="89444" stop="89341"/>
                    <exon start="88695" stop="88620"/>
                    <exon start="88512" stop="88345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITMATPNGIIYYSAKSPQHPKVHTHSQGTEHSKHNGYSNMPRLKFSNKRFWEACGKLSNRVIFRGSPVLCLSTETRDTETECARNSDDCSNISSVQENDQATTVGKVIPSSQAIAEACKFAYNDAKFVNERAKNDIVLLSREIMRMDARARQDVAFLGSEFLKLDARAREDTEKVDHNVKKRAERIQHVATILKNIAQTRLKKAADRHWSDGALEADLRRADFVAKQRAMEDSLMALEFVKNIHDRMVSKMCKLKRSSIDTEKTRHITLEKNGKTLEFLPGEVSADRLTAIQEAYWDIASALSEADGIDYTDPEELELLVATLIDLDAMDGKSSVSLLAECSSSPDVNTRKALANALAAAPSMWTLGNAGMGALQRLAEDDNPAIAAAASKTILELKRQWEIGEGDSWRFMVDEVSPGDVGSQDDNNGTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="88513" e_stop="88129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88513" e_stop="88129" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88513" stop="88129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88486" stop="88129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACTAGCAGAAGATGACAACCCTGCCATTGCAGCTGCTGCATCTAAAACCATTCTTGAATTGAAAAGACAATGGGAAATAGGAGAGGGAGATAGCTGGAGGTTCATGGTGGACGAAGTGTCACCAGGGGATGTAGGGAGTCAAGATGACAACAATGGGACATATTAGAAGGTGCCCGTAACTCAATACTGTAGATATCTAGATGAAGGGACTAATCGATATTCGTCCTGTAAAAAAAAAAATAGTTCATAAGCTCTACTTACATTAGAAAAAAAAATGCCAAACTGATTTCATCCTTTCATGCTATGTAACTTGTTTGTATCTTTGGATCATTGATATTTTTATCAATGTATAAAAAGTCTAAAGCAACACTTTATTCTTCTT</gDNA_template>
            <first_frame> E  T  S  R  R  *  Q  P  C  H  C  S  C  C  I  *  N  H  S  *  I  E  K  T  M  G  N  R  R  G  R  *  L  E  V  H  G  G  R  S  V  T  R  G  C  R  E  S  R  *  Q  Q  W  D  I  L  E  G  A  R  N  S  I  L  *  I  S  R  *  R  D  *  S  I  F  V  L  *  K  K  K  *  F  I  S  S  T  Y  I  R  K  K  N  A  K  L  I  S  S  F  H  A  M  *  L  V  C  I  F  G  S  L  I  F  L  S  M  Y  K  K  S  K  A  T  L  Y  S  S  </first_frame>
            <second_frame>  R  L  A  E  D  D  N  P  A  I  A  A  A  A  S  K  T  I  L  E  L  K  R  Q  W  E  I  G  E  G  D  S  W  R  F  M  V  D  E  V  S  P  G  D  V  G  S  Q  D  D  N  N  G  T  Y  *  K  V  P  V  T  Q  Y  C  R  Y  L  D  E  G  T  N  R  Y  S  S  C  K  K  K  N  S  S  *  A  L  L  T  L  E  K  K  M  P  N  *  F  H  P  F  M  L  C  N  L  F  V  S  L  D  H  *  Y  F  Y  Q  C  I  K  S  L  K  Q  H  F  I  L  L </second_frame>
            <third_frame>   D  *  Q  K  M  T  T  L  P  L  Q  L  L  H  L  K  P  F  L  N  *  K  D  N  G  K  *  E  R  E  I  A  G  G  S  W  W  T  K  C  H  Q  G  M  *  G  V  K  M  T  T  M  G  H  I  R  R  C  P  *  L  N  T  V  D  I  *  M  K  G  L  I  D  I  R  P  V  K  K  K  I  V  H  K  L  Y  L  H  *  K  K  K  C  Q  T  D  F  I  L  S  C  Y  V  T  C  L  Y  L  W  I  I  D  I  F  I  N  V  *  K  V  *  S  N  T  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0027B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="103506" PGL_stop="102199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103506" e_stop="102199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="103506" e_stop="102199" e_length="1308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103506" stop="102657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103448" stop="102574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103389" stop="102829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103381" stop="102697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103380" stop="102800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103148" stop="102683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103035" stop="102199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102857" stop="102199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACCCTTATTAAACTCCAAACAATATAGTATATGATATTCGACTGATCGAACAGAGACGAAAGTTAACCATAATAAATCAGGAGTGAGTTCGGTGTGAAAGGATTCTCGCTCAACGGAGAAATGGCAACTTTCACTTTCTCATTGTGTTTTATACTCTTCCTCTTTGTCTTAGTTCATCCTTCTTCGTCTTCGTCTTCGTTTTCGCCTTATCTATATCCGTCAACGTTTTCCATGAACTACGATAAGATGCTTACGAGTTTCAAAGTTTTCATATATCCAACGACTCAACGAATTATTTTTTTTAGTCCGTCAGCTTCAAATTTCTACGAATCTCTCATTAACAGCGCGTTTATCACTCAGGAGCCTGAAGAAGCTGATCTGTTCTTCGTGGTTTTCTCTCCGGAGATATCTAGTCGTTCTCAGGCGCGGCTTGTTCGTGAGCTGAGAACGAAGTATCCTTACTGGAACCGGACGTTAGGAGCTGATCATTTTTTTATCTCACCGGAAGGAATTGATTTTTCTTCTGATAGAAATGCACTTGAGCTGAAGAAAAATTCAGTTCAGATTTCGGTTTTTCCGACTGTTTCAGGTAAGTTTATACCTCATAAGGATATCAGTTTGTCTCCGGTGAGTAAATCCTCTCTCGTACTGTCCCACGCGCCGGTGAATATGGATCGTTCGTGTTTAGGTTATCTGAAATGGGACGGGAAGACGGAGGCGGAGTTGGTGGAGGAGTTGAGGTTGGATTCGGAGTTCGTCGTTGAATCTGAGCCGTTGGATCAATTAGGAAGAGTGAAGAGTAGTAAGTTTTGTCTGTTCTTCTACGAAGCTGAATCGACGTTGGATTTGACTGAAGCAATGGCGGCGGGATGTGTTCCGGTAGTGATTGTTGACCGTCCGGTTCAGGATTTTCCGTTGATGGACGTATTGAGGTGGTCGGAAATGGCACTGTTGATCGGAAACCGCCGTGGAGGTCAGGGACTGAAGGCGGTCCTGAGCGGTGTGCCGGAGGATAGATATCAGCGGATGAGGGGATTGTGTGTAGCGGCGGCTCACCATATGGTGTGGAACGCGGAACCTCAGGCGTACGATGCTTTTCATATGGTGATGTATCAGCTGTGGATGAGACGGCATACGATTAGATACACTCGGAGGGAAGAATTTTAGTGTTGAAAATTCAATTTCTTTTGCTTGTAGAATTAGTATATGATTAATAATACTATAATCCTAATTAACGGGTCAATAAATTGTATGCTGCCTTTATAATGATTGTAATTTGTTTACTCCCTAAAAGGACATGTTAAAA</gDNA_template>
            <first_frame> Q  P  L  L  N  S  K  Q  Y  S  I  *  Y  S  T  D  R  T  E  T  K  V  N  H  N  K  S  G  V  S  S  V  *  K  D  S  R  S  T  E  K  W  Q  L  S  L  S  H  C  V  L  Y  S  S  S  L  S  *  F  I  L  L  R  L  R  L  R  F  R  L  I  Y  I  R  Q  R  F  P  *  T  T  I  R  C  L  R  V  S  K  F  S  Y  I  Q  R  L  N  E  L  F  F  L  V  R  Q  L  Q  I  S  T  N  L  S  L  T  A  R  L  S  L  R  S  L  K  K  L  I  C  S  S  W  F  S  L  R  R  Y  L  V  V  L  R  R  G  L  F  V  S  *  E  R  S  I  L  T  G  T  G  R  *  E  L  I  I  F  L  S  H  R  K  E  L  I  F  L  L  I  E  M  H  L  S  *  R  K  I  Q  F  R  F  R  F  F  R  L  F  Q  V  S  L  Y  L  I  R  I  S  V  C  L  R  *  V  N  P  L  S  Y  C  P  T  R  R  *  I  W  I  V  R  V  *  V  I  *  N  G  T  G  R  R  R  R  S  W  W  R  S  *  G  W  I  R  S  S  S  L  N  L  S  R  W  I  N  *  E  E  *  R  V  V  S  F  V  C  S  S  T  K  L  N  R  R  W  I  *  L  K  Q  W  R  R  D  V  F  R  *  *  L  L  T  V  R  F  R  I  F  R  *  W  T  Y  *  G  G  R  K  W  H  C  *  S  E  T  A  V  E  V  R  D  *  R  R  S  *  A  V  C  R  R  I  D  I  S  G  *  G  D  C  V  *  R  R  L  T  I  W  C  G  T  R  N  L  R  R  T  M  L  F  I  W  *  C  I  S  C  G  *  D  G  I  R  L  D  T  L  G  G  K  N  F  S  V  E  N  S  I  S  F  A  C  R  I  S  I  *  L  I  I  L  *  S  *  L  T  G  Q  *  I  V  C  C  L  Y  N  D  C  N  L  F  T  P  *  K  D  M  L  K </first_frame>
            <second_frame>  N  P  Y  *  T  P  N  N  I  V  Y  D  I  R  L  I  E  Q  R  R  K  L  T  I  I  N  Q  E  *  V  R  C  E  R  I  L  A  Q  R  R  N  G  N  F  H  F  L  I  V  F  Y  T  L  P  L  C  L  S  S  S  F  F  V  F  V  F  V  F  A  L  S  I  S  V  N  V  F  H  E  L  R  *  D  A  Y  E  F  Q  S  F  H  I  S  N  D  S  T  N  Y  F  F  *  S  V  S  F  K  F  L  R  I  S  H  *  Q  R  V  Y  H  S  G  A  *  R  S  *  S  V  L  R  G  F  L  S  G  D  I  *  S  F  S  G  A  A  C  S  *  A  E  N  E  V  S  L  L  E  P  D  V  R  S  *  S  F  F  Y  L  T  G  R  N  *  F  F  F  *  *  K  C  T  *  A  E  E  K  F  S  S  D  F  G  F  S  D  C  F  R  *  V  Y  T  S  *  G  Y  Q  F  V  S  G  E  *  I  L  S  R  T  V  P  R  A  G  E  Y  G  S  F  V  F  R  L  S  E  M  G  R  E  D  G  G  G  V  G  G  G  V  E  V  G  F  G  V  R  R  *  I  *  A  V  G  S  I  R  K  S  E  E  *  *  V  L  S  V  L  L  R  S  *  I  D  V  G  F  D  *  S  N  G  G  G  M  C  S  G  S  D  C  *  P  S  G  S  G  F  S  V  D  G  R  I  E  V  V  G  N  G  T  V  D  R  K  P  P  W  R  S  G  T  E  G  G  P  E  R  C  A  G  G  *  I  S  A  D  E  G  I  V  C  S  G  G  S  P  Y  G  V  E  R  G  T  S  G  V  R  C  F  S  Y  G  D  V  S  A  V  D  E  T  A  Y  D  *  I  H  S  E  G  R  I  L  V  L  K  I  Q  F  L  L  L  V  E  L  V  Y  D  *  *  Y  Y  N  P  N  *  R  V  N  K  L  Y  A  A  F  I  M  I  V  I  C  L  L  P  K  R  T  C  *   </second_frame>
            <third_frame>   T  L  I  K  L  Q  T  I  *  Y  M  I  F  D  *  S  N  R  D  E  S  *  P  *  *  I  R  S  E  F  G  V  K  G  F  S  L  N  G  E  M  A  T  F  T  F  S  L  C  F  I  L  F  L  F  V  L  V  H  P  S  S  S  S  S  S  F  S  P  Y  L  Y  P  S  T  F  S  M  N  Y  D  K  M  L  T  S  F  K  V  F  I  Y  P  T  T  Q  R  I  I  F  F  S  P  S  A  S  N  F  Y  E  S  L  I  N  S  A  F  I  T  Q  E  P  E  E  A  D  L  F  F  V  V  F  S  P  E  I  S  S  R  S  Q  A  R  L  V  R  E  L  R  T  K  Y  P  Y  W  N  R  T  L  G  A  D  H  F  F  I  S  P  E  G  I  D  F  S  S  D  R  N  A  L  E  L  K  K  N  S  V  Q  I  S  V  F  P  T  V  S  G  K  F  I  P  H  K  D  I  S  L  S  P  V  S  K  S  S  L  V  L  S  H  A  P  V  N  M  D  R  S  C  L  G  Y  L  K  W  D  G  K  T  E  A  E  L  V  E  E  L  R  L  D  S  E  F  V  V  E  S  E  P  L  D  Q  L  G  R  V  K  S  S  K  F  C  L  F  F  Y  E  A  E  S  T  L  D  L  T  E  A  M  A  A  G  C  V  P  V  V  I  V  D  R  P  V  Q  D  F  P  L  M  D  V  L  R  W  S  E  M  A  L  L  I  G  N  R  R  G  G  Q  G  L  K  A  V  L  S  G  V  P  E  D  R  Y  Q  R  M  R  G  L  C  V  A  A  A  H  H  M  V  W  N  A  E  P  Q  A  Y  D  A  F  H  M  V  M  Y  Q  L  W  M  R  R  H  T  I  R  Y  T  R  R  E  E  F  *  C  *  K  F  N  F  F  C  L  *  N  *  Y  M  I  N  N  T  I  I  L  I  N  G  S  I  N  C  M  L  P  L  *  *  L  *  F  V  Y  S  L  K  G  H  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103429" stop="102338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSEFGVKGFSLNGEMATFTFSLCFILFLFVLVHPSSSSSSFSPYLYPSTFSMNYDKMLTSFKVFIYPTTQRIIFFSPSASNFYESLINSAFITQEPEEADLFFVVFSPEISSRSQARLVRELRTKYPYWNRTLGADHFFISPEGIDFSSDRNALELKKNSVQISVFPTVSGKFIPHKDISLSPVSKSSLVLSHAPVNMDRSCLGYLKWDGKTEAELVEELRLDSEFVVESEPLDQLGRVKSSKFCLFFYEAESTLDLTEAMAAGCVPVVIVDRPVQDFPLMDVLRWSEMALLIGNRRGGQGLKAVLSGVPEDRYQRMRGLCVAAAHHMVWNAEPQAYDAFHMVMYQLWMRRHTIRYTRREEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="110354" PGL_stop="105169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110354" e_stop="110225"/>
            <exon e_start="109992" e_stop="109898"/>
            <exon e_start="107289" e_stop="107028"/>
            <exon e_start="106915" e_stop="106719"/>
            <exon e_start="106521" e_stop="106334"/>
            <exon e_start="105672" e_stop="105169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="110354" e_stop="110225" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109992" e_stop="109898" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107289" e_stop="107028" e_length="262"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.890">
            <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106915" e_stop="106719" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.818" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106521" e_stop="106334" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.868" acc_prob="0.962">
            <gDNA_intron_boundary i_start="106333" i_stop="105673" i_length="661"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="105672" e_stop="105169" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110354" stop="110225"/>
              <exon start="109992" stop="109898"/>
              <exon start="107289" stop="107028"/>
              <exon start="106915" stop="106719"/>
              <exon start="106521" stop="106463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110353" stop="110225"/>
              <exon start="109992" stop="109898"/>
              <exon start="107289" stop="107032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110317" stop="110225"/>
              <exon start="109992" stop="109898"/>
              <exon start="107289" stop="107028"/>
              <exon start="106915" stop="106833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110315" stop="110225"/>
              <exon start="109992" stop="109898"/>
              <exon start="107289" stop="107028"/>
              <exon start="106915" stop="106719"/>
              <exon start="106521" stop="106384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107220" stop="107028"/>
              <exon start="106915" stop="106719"/>
              <exon start="106521" stop="106350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107053" stop="107028"/>
              <exon start="106915" stop="106719"/>
              <exon start="106521" stop="106504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106758" stop="106719"/>
              <exon start="106521" stop="106334"/>
              <exon start="105672" stop="105169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG : ATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG : GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG : GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG : AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACG : GATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTGTTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATAAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAACTAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTGCTTAGAAGCAGATTCAAGATTTTAATTTAACGGGTTCA</gDNA_template>
            <first_frame> L  L  P  F  S  S  L  A  L  D  S  P  L  L  *  P  *  K  L  V  N  *  R  N  M  N  P  F  A  N  *  *  T  N  L  S  I  L  L  *  I  *  Q   : D  G  R  L  L  L  D  H  F  L  G  S  F  I  L  S  C  W  S  F  *  C  *  C  W  R  C  *  P  F  V  Q  :  G  L  F  W  P  M  *  R  D  R  M  C  W  R  N  M  L  R  P  L  Q  Y  S  F  K  *  F  F  F  *  *  Q  L  V  L  E  R  A  S  I  P  V  A  E  T  S  K  L  P  K  R  L  P  V  S  L  H  D  S  K  R  N  R  T  S  N  S  W  I  W  A  C  E  I  S  W  E  M  A  I  Q  T  R  L  W  A  S   : G  A  C  F  C  C  F  L  C  T  *  P  C  N  A  S  P  W  M  A  V  L  Y  H  A  Y  L  L  Q  V  T  I  K  C  R  *  D  D  L  L  Q  L  H  E  F  V  A  H  L  C  V  L  V  Y  *  F  M  V  M  E  C  Y  L  P  R  S  :  R  H  G  F  Y  R  K  A  R  L  L  I  C  C  G  V  T  W  I  F  P  D  C  I  S  T  K  K  F  Q  C  K  E  *  G  Y  E  S  S  G  C  C  S  I  A  C  L  H  H  H  S  Y  T  V  P  E  Q  L  S  N  G  L  R :   M  E  H  E  S  L  C  C  D  S  C  F  S  T  S  N  L  V  N  L  G  W  N  K  P  S  S  F  P  V  E  V  V  D  G  G  C  W  R  W  P  R  Y  A  P  R  D  L  R  L  P  S  I  S  R  T  R  R  C  S  C  T  L  A  C  H  H  N  P  S  Y  L  Y  L  V  E  F  H  Q  G  *  R  E  V  W  N  F  Q  L  E  *  K  R  R  V  V  F  L  T  G  F  *  S  F  I  L  L  D  K  F  F  D  I  R  E  L  *  Q  V  L  K  *  *  L  L  L  C  S  F  L  Q  V  E  D  V  C  L  C  *  K  N  *  K  S  K  F  F  S  L  *  K  S  V  I  L  L  R  S  R  F  K  I  L  I  *  R  V   </first_frame>
            <second_frame>  F  Y  L  S  P  H  L  L  W  I  L  L  S  F  S  H  K  N  W  *  I  E  E  I  *  I  L  L  L  I  D  K  Q  I  *  V  S  F  C  E  S  N  K  :  M  A  D  C  Y  W  I  T  F  L  V  V  L  F  C  L  V  G  A  F  D  A  S  A  G  D  A  D  P  L  Y  R :   A  C  F  G  Q  C  K  E  T  G  C  A  G  E  T  C  F  G  H  C  N  T  P  L  N  N  S  S  S  D  D  N  W  Y  L  K  E  P  L  Y  L  W  L  K  Q  A  N  C  L  S  D  C  Q  Y  H  C  M  I  Q  R  E  T  E  R  A  T  H  G  F  G  P  V  K  Y  H  G  K  W  P  F  K  R  V  F  G  L  Q  :  E  P  V  S  V  A  F  S  A  L  N  L  A  M  H  L  H  G  W  L  S  F  I  T  L  I  Y  Y  K  L  R  S  N  A  D  E  T  T  C  Y  S  Y  T  S  L  W  H  I  Y  A  F  L  S  I  N  S  W  L  W  S  A  I  F  H  G  R :   D  M  D  F  T  E  K  L  D  Y  S  S  A  V  A  L  L  G  F  S  L  I  V  S  V  L  R  S  F  S  V  K  N  E  A  T  R  V  L  V  A  A  P  L  L  A  F  T  T  T  H  I  L  Y  L  N  N  Y  Q  M  D  Y   : G  W  N  M  K  V  C  V  V  I  A  V  S  Q  L  L  I  W  S  I  W  A  G  I  S  H  H  P  S  R  W  K  L  W  T  V  V  V  G  G  G  L  A  M  L  L  E  I  Y  D  F  P  P  Y  Q  G  L  V  D  A  H  A  L  W  H  A  T  T  I  P  L  T  Y  I  W  W  S  F  I  K  D  D  A  K  F  G  T  S  N  S  S  K  K  D  E  *  C  F  *  Q  G  F  K  V  L  Y  C  L  I  S  F  L  T  *  E  S  Y  S  K  Y  S  N  S  N  S  F  Y  V  P  S  C  K  *  R  M  F  V  C  A  R  K  T  R  N  Q  S  F  S  A  Y  R  R  V  S  Y  C  L  E  A  D  S  R  F  *  F  N  G  F  </second_frame>
            <third_frame>   F  T  F  L  L  T  C  F  G  F  S  S  P  L  A  I  K  I  G  E  L  K  K  Y  E  S  F  C  *  L  I  N  K  F  E  Y  P  F  V  N  L  T  R :   W  Q  I  V  I  G  S  L  S  W  *  F  Y  F  V  L  L  E  L  L  M  L  V  L  E  M  L  T  L  C  T   : G  L  V  L  A  N  V  K  R  P  D  V  L  E  K  H  A  S  A  I  A  I  L  L  *  I  I  L  L  L  M  T  T  G  T  *  K  S  L  Y  T  C  G  *  N  K  Q  T  A  *  A  I  A  S  I  T  A  *  F  K  E  K  Q  N  E  Q  L  M  D  L  G  L  *  N  I  M  G  N  G  H  S  N  A  S  L  G  F  R :   S  L  F  L  L  L  S  L  H  L  T  L  Q  C  I  S  M  D  G  C  P  L  S  R  L  F  T  T  S  Y  D  Q  M  P  M  R  R  P  A  T  V  T  R  V  C  G  T  S  M  R  S  C  L  L  I  H  G  Y  G  V  L  S  S  T  V   : E  T  W  I  L  Q  K  S  *  T  T  H  L  L  W  R  Y  L  D  F  P  *  L  Y  Q  Y  *  E  V  S  V  *  R  M  R  L  R  E  F  W  L  L  L  H  C  L  P  S  P  P  L  I  Y  C  T  *  T  T  I  K  W  T  T  :  D  G  T  *  K  F  V  L  *  *  L  F  L  N  F  *  F  G  Q  S  G  L  E  *  A  I  I  L  P  G  G  S  C  G  R  W  L  L  E  V  A  S  L  C  S  *  R  S  T  T  S  L  H  I  K  D  S  *  M  L  M  H  F  G  M  P  P  Q  S  L  L  P  I  S  G  G  V  S  S  R  M  T  R  S  L  E  L  P  T  R  V  K  K  T  S  S  V  F  D  R  V  L  K  F  Y  I  A  *  *  V  F  *  H  K  R  A  I  A  S  T  Q  I  V  T  P  F  M  F  L  L  A  S  R  G  C  L  F  V  L  E  K  L  E  I  K  V  F  Q  P  I  E  E  C  H  I  A  *  K  Q  I  Q  D  F  N  L  T  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110248" stop="110225"/>
                    <exon start="109992" stop="109898"/>
                    <exon start="107289" stop="107028"/>
                    <exon start="106915" stop="106719"/>
                    <exon start="106521" stop="106334"/>
                    <exon start="105672" stop="105386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSFCESNKMADCYWITFLVVLFCLVGAFDASAGDADPLYRACFGQCKETGCAGETCFGHCNTPLNNSSSDDNWYLKEPLYLWLKQANCLSDCQYHCMIQRETERATHGFGPVKYHGKWPFKRVFGLQEPVSVAFSALNLAMHLHGWLSFITLIYYKLRSNADETTCYSYTSLWHIYAFLSINSWLWSAIFHGRDMDFTEKLDYSSAVALLGFSLIVSVLRSFSVKNEATRVLVAAPLLAFTTTHILYLNNYQMDYGWNMKVCVVIAVSQLLIWSIWAGISHHPSRWKLWTVVVGGGLAMLLEIYDFPPYQGLVDAHALWHATTIPLTYIWWSFIKDDAKFGTSNSSKKDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="115103" PGL_stop="113643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115103" e_stop="114926"/>
            <exon e_start="114732" e_stop="114708"/>
            <exon e_start="114162" e_stop="113643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115103" e_stop="114926" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="114925" i_stop="114733" i_length="193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114732" e_stop="114708" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="114162" e_stop="113643" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115103" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115103" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115094" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115089" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115089" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115089" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115089" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115088" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115088" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115085" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115083" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115083" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115083" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115083" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115083" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115083" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115083" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115082" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115081" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115080" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115080" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115080" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115080" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115080" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115080" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115078" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115075" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115075" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115065" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115065" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115065" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115065" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115054" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115052" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357864" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115050" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115041" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115041" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115040" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115040" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115040" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115037" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115037" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115036" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115031" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114998" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114996" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352507" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114994" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114994" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114994" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114986" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114986" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114986" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114986" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114986" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114984" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114969" stop="114926"/>
              <exon start="114732" stop="114708"/>
              <exon start="114162" stop="113654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114092" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336468" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114074" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114074" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113891" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAATATTTCCATTTATCTTCTCTTCTTCTTAAATATTTTATTTTCCTTCAAACTATATAGTAATTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAG : GGTTACAACAAGCTCCGCCCAACAG : ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTTTGTTCACTT</gDNA_template>
            <first_frame> I  K  Y  F  H  L  S  S  L  L  L  K  Y  F  I  F  L  Q  T  I  *  *  F  H  F  P  F  E  E  K  K  N  G  K  E  W  L  Q  C  *  L  L  V  T  Y  L  N  V  L  D  F  A  H  F  L  *  R  G  R   : G  L  Q  Q  A  P  P  N  R :   L  Q  A  K  M  Y  L  *  M  L  S  N  I  T  Q  E  A  M  Y  V  L  L  S  K  M  L  C  N  M  F  M  C  S  *  R  S  L  W  Q  Q  T  I  M  P  L  L  Q  Q  L  E  D  S  R  R  K  T  *  M  P  L  I  K  *  D  I  N  N  *  G  N  *  S  F  F  P  N  N  *  W  K  R  L  R  V  L  *  L  Y  G  H  I  V  F  C  I  A  L  N  *  F  G  V  I  L  M  *  C  F  K  H  F  V  F  L  Y  L  C  Y  H  V  V  *  A  E  L  *  Y  W  S  D  I  *  S  M  Y  *  D  S  Y  S  R  F  Q  L  A  R  R  *  S  V  I  V  I  F  L  F  Y  N  E  T  I  I  I  T  Y  L  L  N  R  V  C  S  L </first_frame>
            <second_frame>  S  N  I  S  I  Y  L  L  F  F  L  N  I  L  F  S  F  K  L  Y  S  N  F  T  F  H  L  K  R  R  K  M  A  K  S  G  Y  N  A  S  F  L  L  L  I  S  M  F  L  I  L  L  T  F  S  N  V  V  E  :  G  Y  N  K  L  R  P  T   : D  C  K  P  R  C  T  Y  R  C  S  A  T  S  H  K  K  P  C  M  F  F  C  Q  K  C  C  A  T  C  L  C  V  P  K  G  V  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  Q  E  G  K  P  K  C  P  *  L  N  R  I  L  I  I  R  E  I  N  L  F  F  P  I  I  N  G  K  D  *  E  Y  Y  S  Y  M  V  I  L  C  F  V  L  H  *  I  D  L  E  *  F  *  C  N  V  L  S  I  L  Y  F  S  T  C  V  I  M  L  S  E  L  S  C  S  T  G  A  I  Y  D  L  C  I  R  I  H  I  A  V  F  N  L  L  G  D  E  V  L  L  *  S  F  F  F  I  T  R  L  *  *  *  L  I  Y  *  I  E  F  V  H   </second_frame>
            <third_frame>   Q  I  F  P  F  I  F  S  S  S  *  I  F  Y  F  P  S  N  Y  I  V  I  S  L  S  I  *  R  E  E  K  W  Q  R  V  V  T  M  L  A  S  C  Y  L  S  Q  C  S  *  F  C  S  L  S  L  T  W  S  R :   V  T  T  S  S  A  Q  Q  :  I  A  S  Q  D  V  L  I  D  A  Q  Q  H  H  T  R  S  H  V  C  S  F  V  K  N  V  V  Q  H  V  Y  V  F  L  K  E  F  M  A  T  N  N  H  A  L  V  T  T  I  G  R  L  K  K  E  N  L  N  A  L  N  *  I  G  Y  *  *  L  G  K  L  I  F  F  S  Q  *  L  M  E  K  I  K  S  T  I  A  I  W  S  Y  C  V  L  Y  C  I  K  L  I  W  S  N  F  D  V  M  F  *  A  F  C  I  S  L  L  V  L  S  C  C  L  S  *  V  V  V  L  E  R  Y  M  I  Y  V  L  G  F  I  *  P  F  S  T  C  S  E  M  K  C  Y  C  N  L  S  F  L  *  R  D  Y  N  N  N  L  F  I  E  S  S  L  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115102" stop="114926"/>
                    <exon start="114732" stop="114708"/>
                    <exon start="114162" stop="113981"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNISIYLLFFLNILFSFKLYSNFTFHLKRRKMAKSGYNASFLLLISMFLILLTFSNVVEGYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="114306" e_stop="113652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="114306" e_stop="113652" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114306" stop="113652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114092" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336468" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114074" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114074" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113891" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAACGATAATTCAATCTACTAAAATATCTATCACTTATTTTTATTTTTATTTTGTTTTCGCTAGAGTTTGAACTTGATTTTTTTTAATTTTATTTTAATATATGGTTTGTTTGATTTTTTTTTTATTATTATTATTATATAGATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGAATCGAGTT</gDNA_template>
            <first_frame> M  N  D  N  S  I  Y  *  N  I  Y  H  L  F  L  F  L  F  C  F  R  *  S  L  N  L  I  F  F  N  F  I  L  I  Y  G  L  F  D  F  F  F  I  I  I  I  I  *  I  A  S  Q  D  V  L  I  D  A  Q  Q  H  H  T  R  S  H  V  C  S  F  V  K  N  V  V  Q  H  V  Y  V  F  L  K  E  F  M  A  T  N  N  H  A  L  V  T  T  I  G  R  L  K  K  E  N  L  N  A  L  N  *  I  G  Y  *  *  L  G  K  L  I  F  F  S  Q  *  L  M  E  K  I  K  S  T  I  A  I  W  S  Y  C  V  L  Y  C  I  K  L  I  W  S  N  F  D  V  M  F  *  A  F  C  I  S  L  L  V  L  S  C  C  L  S  *  V  V  V  L  E  R  Y  M  I  Y  V  L  G  F  I  *  P  F  S  T  C  S  E  M  K  C  Y  C  N  L  S  F  L  *  R  D  Y  N  N  N  L  F  I  E  S  S  </first_frame>
            <second_frame>  *  T  I  I  Q  S  T  K  I  S  I  T  Y  F  Y  F  Y  F  V  F  A  R  V  *  T  *  F  F  L  I  L  F  *  Y  M  V  C  L  I  F  F  L  L  L  L  L  Y  R  L  Q  A  K  M  Y  L  *  M  L  S  N  I  T  Q  E  A  M  Y  V  L  L  S  K  M  L  C  N  M  F  M  C  S  *  R  S  L  W  Q  Q  T  I  M  P  L  L  Q  Q  L  E  D  S  R  R  K  T  *  M  P  L  I  K  *  D  I  N  N  *  G  N  *  S  F  F  P  N  N  *  W  K  R  L  R  V  L  *  L  Y  G  H  I  V  F  C  I  A  L  N  *  F  G  V  I  L  M  *  C  F  K  H  F  V  F  L  Y  L  C  Y  H  V  V  *  A  E  L  *  Y  W  S  D  I  *  S  M  Y  *  D  S  Y  S  R  F  Q  L  A  R  R  *  S  V  I  V  I  F  L  F  Y  N  E  T  I  I  I  T  Y  L  L  N  R  V </second_frame>
            <third_frame>   E  R  *  F  N  L  L  K  Y  L  S  L  I  F  I  F  I  L  F  S  L  E  F  E  L  D  F  F  *  F  Y  F  N  I  W  F  V  *  F  F  F  Y  Y  Y  Y  Y  I  D  C  K  P  R  C  T  Y  R  C  S  A  T  S  H  K  K  P  C  M  F  F  C  Q  K  C  C  A  T  C  L  C  V  P  K  G  V  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  Q  E  G  K  P  K  C  P  *  L  N  R  I  L  I  I  R  E  I  N  L  F  F  P  I  I  N  G  K  D  *  E  Y  Y  S  Y  M  V  I  L  C  F  V  L  H  *  I  D  L  E  *  F  *  C  N  V  L  S  I  L  Y  F  S  T  C  V  I  M  L  S  E  L  S  C  S  T  G  A  I  Y  D  L  C  I  R  I  H  I  A  V  F  N  L  L  G  D  E  V  L  L  *  S  F  F  F  I  T  R  L  *  *  *  L  I  Y  *  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114190" stop="113981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFYYYYYIDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="115037" e_stop="114708"/>
            <exon e_start="114162" e_stop="113660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115037" e_stop="114708" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114707" i_stop="114163" i_length="545"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="114162" e_stop="113660" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115037" stop="114708"/>
              <exon start="114162" stop="114088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114092" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336468" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114074" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114074" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113891" stop="113660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCACTTTCCATTTGAAGAGAAGAAAAATGGCAAAGAGTGGTTACAATGCTAGCTTCTTGTTACTTATCTCAATGTTCTTGATTTTGCTCACTTTCTCTAACGTGGTCGAGGTAAATACGTTTAACATTTGACGTATAAATGTAATTTCGAATTTATATGCACCTTATTTTTCTATACAATATGATTAACTGATTACTCTTCGATCTATGTGACTACACCATTAATCTCAATTAATTATTACATAAAAATATAATGTACCTTTTTTTTTTTGGAATTTATGTGTCTTTTTCTTCATTTTTACAGGGTTACAACAAGCTCCGCCCAACAG : ATTGCAAGCCAAGATGTACTTATAGATGCTCAGCAACATCACACAAGAAGCCATGTATGTTCTTTTGTCAAAAATGTTGTGCAACATGTTTATGTGTTCCTAAAGGAGTTTATGGCAACAAACAATCATGCCCTTGTTACAACAATTGGAAGACTCAAGAAGGAAAACCTAAATGCCCTTAATTAAATAGGATATTAATAATTAGGGAAATTAATCTTTTTTTCCCAATAATTAATGGAAAAGATTAAGAGTACTATAGCTATATGGTCATATTGTGTTTTGTATTGCATTAAATTGATTTGGAGTAATTTTGATGTAATGTTTTAAGCATTTTGTATTTCTCTACTTGTGTTATCATGTTGTCTGAGCTGAGTTGTAGTACTGGAGCGATATATGATCTATGTATTAGGATTCATATAGCCGTTTTCAACTTGCTCGGAGATGAAGTGTTATTGTAATCTTTCTTTTTTATAACGAGACTATAATAATAACTTATTTATTGA</gDNA_template>
            <first_frame> F  H  F  P  F  E  E  K  K  N  G  K  E  W  L  Q  C  *  L  L  V  T  Y  L  N  V  L  D  F  A  H  F  L  *  R  G  R  G  K  Y  V  *  H  L  T  Y  K  C  N  F  E  F  I  C  T  L  F  F  Y  T  I  *  L  T  D  Y  S  S  I  Y  V  T  T  P  L  I  S  I  N  Y  Y  I  K  I  *  C  T  F  F  F  L  E  F  M  C  L  F  L  H  F  Y  R  V  T  T  S  S  A  Q  Q  :  I  A  S  Q  D  V  L  I  D  A  Q  Q  H  H  T  R  S  H  V  C  S  F  V  K  N  V  V  Q  H  V  Y  V  F  L  K  E  F  M  A  T  N  N  H  A  L  V  T  T  I  G  R  L  K  K  E  N  L  N  A  L  N  *  I  G  Y  *  *  L  G  K  L  I  F  F  S  Q  *  L  M  E  K  I  K  S  T  I  A  I  W  S  Y  C  V  L  Y  C  I  K  L  I  W  S  N  F  D  V  M  F  *  A  F  C  I  S  L  L  V  L  S  C  C  L  S  *  V  V  V  L  E  R  Y  M  I  Y  V  L  G  F  I  *  P  F  S  T  C  S  E  M  K  C  Y  C  N  L  S  F  L  *  R  D  Y  N  N  N  L  F  I   </first_frame>
            <second_frame>  F  T  F  H  L  K  R  R  K  M  A  K  S  G  Y  N  A  S  F  L  L  L  I  S  M  F  L  I  L  L  T  F  S  N  V  V  E  V  N  T  F  N  I  *  R  I  N  V  I  S  N  L  Y  A  P  Y  F  S  I  Q  Y  D  *  L  I  T  L  R  S  M  *  L  H  H  *  S  Q  L  I  I  T  *  K  Y  N  V  P  F  F  F  W  N  L  C  V  F  F  F  I  F  T  G  L  Q  Q  A  P  P  N  R :   L  Q  A  K  M  Y  L  *  M  L  S  N  I  T  Q  E  A  M  Y  V  L  L  S  K  M  L  C  N  M  F  M  C  S  *  R  S  L  W  Q  Q  T  I  M  P  L  L  Q  Q  L  E  D  S  R  R  K  T  *  M  P  L  I  K  *  D  I  N  N  *  G  N  *  S  F  F  P  N  N  *  W  K  R  L  R  V  L  *  L  Y  G  H  I  V  F  C  I  A  L  N  *  F  G  V  I  L  M  *  C  F  K  H  F  V  F  L  Y  L  C  Y  H  V  V  *  A  E  L  *  Y  W  S  D  I  *  S  M  Y  *  D  S  Y  S  R  F  Q  L  A  R  R  *  S  V  I  V  I  F  L  F  Y  N  E  T  I  I  I  T  Y  L  L  </second_frame>
            <third_frame>   S  L  S  I  *  R  E  E  K  W  Q  R  V  V  T  M  L  A  S  C  Y  L  S  Q  C  S  *  F  C  S  L  S  L  T  W  S  R  *  I  R  L  T  F  D  V  *  M  *  F  R  I  Y  M  H  L  I  F  L  Y  N  M  I  N  *  L  L  F  D  L  C  D  Y  T  I  N  L  N  *  L  L  H  K  N  I  M  Y  L  F  F  F  G  I  Y  V  S  F  S  S  F  L  Q  G  Y  N  K  L  R  P  T   : D  C  K  P  R  C  T  Y  R  C  S  A  T  S  H  K  K  P  C  M  F  F  C  Q  K  C  C  A  T  C  L  C  V  P  K  G  V  Y  G  N  K  Q  S  C  P  C  Y  N  N  W  K  T  Q  E  G  K  P  K  C  P  *  L  N  R  I  L  I  I  R  E  I  N  L  F  F  P  I  I  N  G  K  D  *  E  Y  Y  S  Y  M  V  I  L  C  F  V  L  H  *  I  D  L  E  *  F  *  C  N  V  L  S  I  L  Y  F  S  T  C  V  I  M  L  S  E  L  S  C  S  T  G  A  I  Y  D  L  C  I  R  I  H  I  A  V  F  N  L  L  G  D  E  V  L  L  *  S  F  F  F  I  T  R  L  *  *  *  L  I  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114801" stop="114708"/>
                    <exon start="114162" stop="113981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHKNIMYLFFFGIYVSFSSFLQGYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114782" stop="114708"/>
                    <exon start="114162" stop="113977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTFFFLEFMCLFLHFYRVTTSSAQQIASQDVLIDAQQHHTRSHVCSFVKNVVQHVYVFLKEFMATNNHALVTTIGRLKKENLNALN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="121797" PGL_stop="119894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121797" e_stop="121720"/>
            <exon e_start="121614" e_stop="121485"/>
            <exon e_start="121370" e_stop="121291"/>
            <exon e_start="121199" e_stop="121065"/>
            <exon e_start="120578" e_stop="119894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.711" e_score="0.992"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121797" e_stop="121720" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121719" i_stop="121615" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="121614" e_stop="121485" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.711">
            <gDNA_intron_boundary i_start="121484" i_stop="121371" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="121370" e_stop="121291" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121290" i_stop="121200" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="121199" e_stop="121065" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121064" i_stop="120579" i_length="486"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="120578" e_stop="119894" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121797" stop="121720"/>
              <exon start="121614" stop="121485"/>
              <exon start="121370" stop="121291"/>
              <exon start="121199" stop="121065"/>
              <exon start="120578" stop="120228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121797" stop="121720"/>
              <exon start="121614" stop="121485"/>
              <exon start="121370" stop="121291"/>
              <exon start="121199" stop="121065"/>
              <exon start="120578" stop="120320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121796" stop="121720"/>
              <exon start="121614" stop="121485"/>
              <exon start="121370" stop="121291"/>
              <exon start="121199" stop="121065"/>
              <exon start="120578" stop="120413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121111" stop="121065"/>
              <exon start="120578" stop="119894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGAACGTGTTGTGCCTCCATCAGCTCTTGAGGTTTTGATGAGGATCACCTTCCCAGCACCTTCTGCTCGAATTAAG : GCCACTGACAGGTTTGAAGCGGTCTATCCTACACTGAAAGAGGTAGCTCTTGTTGCTGCCCCTGGGAGCAAAGCAATGAAGCAGCTAACCCAGCGGATACTGCCTTTTGCTATCAAAGCTGTAGGGGAAG : GTGTTCCTGATCTATCAAAGGAAGCTACTGAGCTATCTATTTGGTGTTTGACTCAGAACCCCGACTGTTACAAGCTGTGG : GACAATATTTATCTGGACAATGTAGAAGCAAGTCTAATAATAATTAAGAAGCTGTCCACAGAGTTCAAGGCGCATTCTGCTAAGGGACCTGAACTTGATCCATTGAAGGTGACCTTGAACAGTCTCAGACTTAAG : AGCGAGAAGGCATTGGTCAGTGGGGATAATGCTGCTCATCAAGCGTCCTTGAAGGAAGTGCAGAAGTACTGCAAGATTTTACTTGGACGTTTATCCCATGGTAATGGATGCATGAAGGCTTTCTTTGTTATCGGTCTAACAATGGCTGTGGGTGTTGCTTTTGTCTCCAAGGAGTCCCCGGAGGTCAAGAAACTGTTGGCAGATCGCTTCAATGACTTGCAGTCCCTGGACTTCAAGAAACTGTTGACAGATCTCTCCAACGACGTGCAGTCCCTGGATTTCAAGAAACTGTTGTCAGATTTCAACTTGGCTTGAAACTTCCCCTTCTCACATAGAGGGTTGTAAGTTAAATCACACCTACCTTTGTTATATGTTTAAATTATGTCCCGGCACAGAGAAGCTAGCACACCCCAGAACAAAAATGGGTAGAGAATGAGTTGTTTTAGAAAGGAAAAAAAAATAAAATAGGTACAGCAGATATGATGCCAAGTTTCTGGCCTCAGTTTACAGTGTTTGTGTTTGTTTAGTTTTTTTATGAAACAGAACTATTTAAGTAATCGAATTTCGTTTGGCTGAACTATGTTTGGTTTTTCAAGCCATTTTCATTTGATAAGAAATGGTTTGTAACTTTATATATGTAGTATATGGAAGGAATTGTAAGATATGATTATGGTTGGAATAGCTT</gDNA_template>
            <first_frame> G  E  R  V  V  P  P  S  A  L  E  V  L  M  R  I  T  F  P  A  P  S  A  R  I  K  :  A  T  D  R  F  E  A  V  Y  P  T  L  K  E  V  A  L  V  A  A  P  G  S  K  A  M  K  Q  L  T  Q  R  I  L  P  F  A  I  K  A  V  G  E   : G  V  P  D  L  S  K  E  A  T  E  L  S  I  W  C  L  T  Q  N  P  D  C  Y  K  L  W  :  D  N  I  Y  L  D  N  V  E  A  S  L  I  I  I  K  K  L  S  T  E  F  K  A  H  S  A  K  G  P  E  L  D  P  L  K  V  T  L  N  S  L  R  L  K  :  S  E  K  A  L  V  S  G  D  N  A  A  H  Q  A  S  L  K  E  V  Q  K  Y  C  K  I  L  L  G  R  L  S  H  G  N  G  C  M  K  A  F  F  V  I  G  L  T  M  A  V  G  V  A  F  V  S  K  E  S  P  E  V  K  K  L  L  A  D  R  F  N  D  L  Q  S  L  D  F  K  K  L  L  T  D  L  S  N  D  V  Q  S  L  D  F  K  K  L  L  S  D  F  N  L  A  *  N  F  P  F  S  H  R  G  L  *  V  K  S  H  L  P  L  L  Y  V  *  I  M  S  R  H  R  E  A  S  T  P  Q  N  K  N  G  *  R  M  S  C  F  R  K  E  K  K  I  K  *  V  Q  Q  I  *  C  Q  V  S  G  L  S  L  Q  C  L  C  L  F  S  F  F  M  K  Q  N  Y  L  S  N  R  I  S  F  G  *  T  M  F  G  F  S  S  H  F  H  L  I  R  N  G  L  *  L  Y  I  C  S  I  W  K  E  L  *  D  M  I  M  V  G  I  A  </first_frame>
            <second_frame>  E  N  V  L  C  L  H  Q  L  L  R  F  *  *  G  S  P  S  Q  H  L  L  L  E  L  R :   P  L  T  G  L  K  R  S  I  L  H  *  K  R  *  L  L  L  L  P  L  G  A  K  Q  *  S  S  *  P  S  G  Y  C  L  L  L  S  K  L  *  G  K  :  V  F  L  I  Y  Q  R  K  L  L  S  Y  L  F  G  V  *  L  R  T  P  T  V  T  S  C  G :   T  I  F  I  W  T  M  *  K  Q  V  *  *  *  L  R  S  C  P  Q  S  S  R  R  I  L  L  R  D  L  N  L  I  H  *  R  *  P  *  T  V  S  D  L  R :   A  R  R  H  W  S  V  G  I  M  L  L  I  K  R  P  *  R  K  C  R  S  T  A  R  F  Y  L  D  V  Y  P  M  V  M  D  A  *  R  L  S  L  L  S  V  *  Q  W  L  W  V  L  L  L  S  P  R  S  P  R  R  S  R  N  C  W  Q  I  A  S  M  T  C  S  P  W  T  S  R  N  C  *  Q  I  S  P  T  T  C  S  P  W  I  S  R  N  C  C  Q  I  S  T  W  L  E  T  S  P  S  H  I  E  G  C  K  L  N  H  T  Y  L  C  Y  M  F  K  L  C  P  G  T  E  K  L  A  H  P  R  T  K  M  G  R  E  *  V  V  L  E  R  K  K  K  *  N  R  Y  S  R  Y  D  A  K  F  L  A  S  V  Y  S  V  C  V  C  L  V  F  L  *  N  R  T  I  *  V  I  E  F  R  L  A  E  L  C  L  V  F  Q  A  I  F  I  *  *  E  M  V  C  N  F  I  Y  V  V  Y  G  R  N  C  K  I  *  L  W  L  E  *  L </second_frame>
            <third_frame>   R  T  C  C  A  S  I  S  S  *  G  F  D  E  D  H  L  P  S  T  F  C  S  N  *   : G  H  *  Q  V  *  S  G  L  S  Y  T  E  R  G  S  S  C  C  C  P  W  E  Q  S  N  E  A  A  N  P  A  D  T  A  F  C  Y  Q  S  C  R  G  R :   C  S  *  S  I  K  G  S  Y  *  A  I  Y  L  V  F  D  S  E  P  R  L  L  Q  A  V   : G  Q  Y  L  S  G  Q  C  R  S  K  S  N  N  N  *  E  A  V  H  R  V  Q  G  A  F  C  *  G  T  *  T  *  S  I  E  G  D  L  E  Q  S  Q  T  *   : E  R  E  G  I  G  Q  W  G  *  C  C  S  S  S  V  L  E  G  S  A  E  V  L  Q  D  F  T  W  T  F  I  P  W  *  W  M  H  E  G  F  L  C  Y  R  S  N  N  G  C  G  C  C  F  C  L  Q  G  V  P  G  G  Q  E  T  V  G  R  S  L  Q  *  L  A  V  P  G  L  Q  E  T  V  D  R  S  L  Q  R  R  A  V  P  G  F  Q  E  T  V  V  R  F  Q  L  G  L  K  L  P  L  L  T  *  R  V  V  S  *  I  T  P  T  F  V  I  C  L  N  Y  V  P  A  Q  R  S  *  H  T  P  E  Q  K  W  V  E  N  E  L  F  *  K  G  K  K  N  K  I  G  T  A  D  M  M  P  S  F  W  P  Q  F  T  V  F  V  F  V  *  F  F  Y  E  T  E  L  F  K  *  S  N  F  V  W  L  N  Y  V  W  F  F  K  P  F  S  F  D  K  K  W  F  V  T  L  Y  M  *  Y  M  E  G  I  V  R  Y  D  Y  G  W  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121797" stop="121720"/>
                    <exon start="121614" stop="121485"/>
                    <exon start="121370" stop="121291"/>
                    <exon start="121199" stop="121065"/>
                    <exon start="120578" stop="120264"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GERVVPPSALEVLMRITFPAPSARIKATDRFEAVYPTLKEVALVAAPGSKAMKQLTQRILPFAIKAVGEGVPDLSKEATELSIWCLTQNPDCYKLWDNIYLDNVEASLIIIKKLSTEFKAHSAKGPELDPLKVTLNSLRLKSEKALVSGDNAAHQASLKEVQKYCKILLGRLSHGNGCMKAFFVIGLTMAVGVAFVSKESPEVKKLLADRFNDLQSLDFKKLLTDLSNDVQSLDFKKLLSDFNLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="125042" PGL_stop="123843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125042" e_stop="124824"/>
            <exon e_start="124728" e_stop="124591"/>
            <exon e_start="124031" e_stop="123843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.916" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125042" e_stop="124824" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.916" acc_prob="0.999">
            <gDNA_intron_boundary i_start="124823" i_stop="124729" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124728" e_stop="124591" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.956">
            <gDNA_intron_boundary i_start="124590" i_stop="124032" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="124031" e_stop="123843" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125042" stop="124824"/>
              <exon start="124728" stop="124591"/>
              <exon start="124031" stop="123843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTTATGAAGCTGCTTCCGGTGAAAGTTCTGCCGTCATTGATAAAAACGAGCAGGATAGCGATGGAGAAGATGCCGCTGGTGGTGCAATTGAGAATGACGGTGTTGTGGAGAAGAAGAGTAAGCCGAAGAAGGTGAAGAAACCTAAGGTTACTGTTGCTGAAGCTGCTGCGAAGATCGATAATTCTGATCTAGTTGTTTATCTCGTTGATATATCA : ACCTCGTTTGATAAGCAGGAAGATATACAGCTAATGCGATTTGCAGATTACTTTGGACGAGCATTCGCCAAAGTGAGTTCATCTCAGTTCCCATGGATGAAGATTCTTAGGGAATCTTCAGTTGAGAAGATGATTGAT : ATCCCTGTTTCTCAAATTTCTGAGGATGTTTATAAGACATCTGTTGACTGGCTTAACCAGCGATCATTTGATGCACTTGGTTCCTTTGTGTTATGGTCATTGGATAGCATTATTGCTGATCTTGTACAGCACGAAGGAGCTTCAAAGGGATCCAAAAAGGTGGTTCAGCAAGTATCTTCAAAATCCCAG</gDNA_template>
            <first_frame> K  L  Y  E  A  A  S  G  E  S  S  A  V  I  D  K  N  E  Q  D  S  D  G  E  D  A  A  G  G  A  I  E  N  D  G  V  V  E  K  K  S  K  P  K  K  V  K  K  P  K  V  T  V  A  E  A  A  A  K  I  D  N  S  D  L  V  V  Y  L  V  D  I  S  :  T  S  F  D  K  Q  E  D  I  Q  L  M  R  F  A  D  Y  F  G  R  A  F  A  K  V  S  S  S  Q  F  P  W  M  K  I  L  R  E  S  S  V  E  K  M  I  D  :  I  P  V  S  Q  I  S  E  D  V  Y  K  T  S  V  D  W  L  N  Q  R  S  F  D  A  L  G  S  F  V  L  W  S  L  D  S  I  I  A  D  L  V  Q  H  E  G  A  S  K  G  S  K  K  V  V  Q  Q  V  S  S  K  S  Q </first_frame>
            <second_frame>  S  F  M  K  L  L  P  V  K  V  L  P  S  L  I  K  T  S  R  I  A  M  E  K  M  P  L  V  V  Q  L  R  M  T  V  L  W  R  R  R  V  S  R  R  R  *  R  N  L  R  L  L  L  L  K  L  L  R  R  S  I  I  L  I  *  L  F  I  S  L  I  Y  Q :   P  R  L  I  S  R  K  I  Y  S  *  C  D  L  Q  I  T  L  D  E  H  S  P  K  *  V  H  L  S  S  H  G  *  R  F  L  G  N  L  Q  L  R  R  *  L  I :   S  L  F  L  K  F  L  R  M  F  I  R  H  L  L  T  G  L  T  S  D  H  L  M  H  L  V  P  L  C  Y  G  H  W  I  A  L  L  L  I  L  Y  S  T  K  E  L  Q  R  D  P  K  R  W  F  S  K  Y  L  Q  N  P   </second_frame>
            <third_frame>   A  L  *  S  C  F  R  *  K  F  C  R  H  *  *  K  R  A  G  *  R  W  R  R  C  R  W  W  C  N  *  E  *  R  C  C  G  E  E  E  *  A  E  E  G  E  E  T  *  G  Y  C  C  *  S  C  C  E  D  R  *  F  *  S  S  C  L  S  R  *  Y  I   : N  L  V  *  *  A  G  R  Y  T  A  N  A  I  C  R  L  L  W  T  S  I  R  Q  S  E  F  I  S  V  P  M  D  E  D  S  *  G  I  F  S  *  E  D  D  *   : Y  P  C  F  S  N  F  *  G  C  L  *  D  I  C  *  L  A  *  P  A  I  I  *  C  T  W  F  L  C  V  M  V  I  G  *  H  Y  C  *  S  C  T  A  R  R  S  F  K  G  I  Q  K  G  G  S  A  S  I  F  K  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125042" stop="124824"/>
                    <exon start="124728" stop="124591"/>
                    <exon start="124031" stop="123843"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLYEAASGESSAVIDKNEQDSDGEDAAGGAIENDGVVEKKSKPKKVKKPKVTVAEAAAKIDNSDLVVYLVDISTSFDKQEDIQLMRFADYFGRAFAKVSSSQFPWMKILRESSVEKMIDIPVSQISEDVYKTSVDWLNQRSFDALGSFVLWSLDSIIADLVQHEGASKGSKKVVQQVSSKSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 202 chains have been computed
$ 
$ memory statistics:
$ 340816 bytes spliced alignments in total
$ 162 spliced alignments have been stored
$ 2103 bytes was the average size of a spliced alignment
$ 31152 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1639 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 219 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:47:01
-->
