<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:51:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8890" ref_strand="+" ref_description="SGN-M8890 C2_At5g37690 [cosii_markers]">
      <seq>attcaatcgaaattaattttctctactttttgtaagttagaacaagcttttttgagtagttcaaaatggcgaatttaggtcaagtaattgttggattcttgattattggaattgttgcatatgtggattcagctgaagaacaagttgctacatatgtatttggtgactcattgactgaagttgggaacaataattatttgcaatcattagccaaatctaatttcccattttatggaattgattatgaaggtggaaaagctactggtagattcactaatggaaggactattggtgatattatatctgcaaaacttggggttcaatcaccacccccatatctttctttagcaccaaatgatgatgcaattttaaaaggagtgaattatgcatctggtggagctggaatcctcaatgacactggactttattttattcaaagaatgacatttgatgatcaaataaagagctttgagaagacaaaagaagcaatcaaggctaaaattggacaagaggctgcagaaaaacatgttaatcaagctgtctattttattggaatgggtagcaatgactatgtcaataacttcttgcaacccttcttagcagcggggcaacaatatacacacgatgagtttgtagagcttctaacctcaactttaggcgaacaattcacaaggcttcatcaacttggagcaagaaagatgatttttcatggacttggaccattaggttgtattccttcacaaagggtgaagtccacaaggggaatatgtttgaaacaagttaatttatgggtacaagaattcaactcaaaagtggaaaaattgattgccactttgaataaacatctaccatatgcacaaatatcatttgcagatacttatcctattgttcttgacttaattgagaaccccacttcttatggtttcaagatatcaaatacatcatgttgcaatgtagacacaagtgttggaggattatgtttgccaaattcaaaactatgcaataatagaagagagtatgtattttgggatgcatttcatccaacagatgcagcaaatgcagtgcttgcagataaaattttcaccacattgtttcatcaagcctcatctagccccgcaccagcaccagcaccaacaccaactcctcgaaagtttcttatgacatcgataaatctcgattaaaaaagcaaaaatatcaatacaagaaaaaaatataattctgttttcgtgttgcttttgtaatttttgaagatcgtatgccaaaaaattacttgattagtcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="48327" stop="44688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48027" g_stop="47726" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47725" i_stop="47016" i_length="710">
            <donor d_prob="0.756" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47015" g_stop="46888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="431" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46887" i_stop="46799" i_length="89">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46798" g_stop="46672" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="558" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46671" i_stop="46478" i_length="194">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46477" g_stop="46365" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="671" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46364" i_stop="46236" i_length="129">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46235" g_stop="45986" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="921" r_length="250" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45985" i_stop="45346" i_length="640">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45345" g_stop="44985" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="1285" r_length="364" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-M8890" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>1281</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48027" e_stop="47726"/>
          <exon e_start="47015" e_stop="46888"/>
          <exon e_start="46798" e_stop="46672"/>
          <exon e_start="46477" e_stop="46365"/>
          <exon e_start="46235" e_stop="45986"/>
          <exon e_start="45345" e_stop="44985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTCGAAACTAA-TTTCTCTACTTTTTATAAGTCAGAACGAACTTTTTCGAGTAGTACGAAATGGCGAATTTAGGTCAAGTAATTGTTGGATTGTTGATTATTGGAATTGTTGCATGTGTGGATTCAGCTGAAGAACAAGTTGTTACATATGTATTTGGTGATTCATTGACTGAAGTTGGGAACAATAATTATTTGCAATCATTAGCCAAATCTAATTTCCCATTTTATGGTATTGATTATGAAGGTGGAAAAGCTACTGGTAGATTTACTAATGGAAGGACTATTGGTGATATAATATGTAATTTCTATGAACTTTGCTTAGTAAACTTATTTATTTTCTATCGTTTTTTCAGGTGACATTCAGACAGATCGGATTAAGCTATATTGTTTGATTCTTTAAAATAATGTCATGCTTTTATCAAATTCTCCAATATACATTAATTTTTTAATAGCATTTTGAAAAATCTGAACAACATACATTAGCACAAATCAAATTAAATAAATAATCATGATTTAACTCGTATAAAATTTGATTGAGTCAAAAGTAGAATATAATAATGAGTCATAATGTTAACTCACATTACATAATTCACAATCTTCATGTTCTATGCATATATAATTTGATGAGTCATTTCGAGTTTGTTAGGTCAATACAATAAGTATATCGTAGTAAAATTACTTTAAAAGTAGGAATTTTCAAATGACGTTTTTGATAGGATTCATTAGTGTTAAAGAATGACAAAAGTCCCACGTCGGTGGTTATGAGACAGGTGGACTCCTTATAAGGCTTGGACAATCCTCCTTCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGACTAAGACCTAATTTCACATGGTATCAGAGCAGGACCCGTCTCACCCGATGTTGGTGTCTCCAAAATCAAAATTGTTCACGCACCAGATACGAAGCACTGGAGATATTCATTCGGATACTTAAAAAATGAGTTGTTTTTAACATATATATATTTTTCCTCTTCAACTTTCAGCTGCAAAACTTGGGGTTCAATCACCACCTCCATATCTTTCTTTAGCACCAAATGATGATGCAATTTTGAAAGGGGTGAATTATGCATCTGGTGGAGCTGGAATTCTCAATGACACTGGAATTTATTTTGTAATAATCATTTCATTTTTTTTAAAAAAAAAAATTAATTAATTTCATTTCCAATTGATTCTAAATTTGTTATGTGTACATAATTACAGATTCAAAGAATGACATTTGATGATCAAATAAAAAGCTTTGAGAAGACAAAAGAAGCAATCAAGGCTAAAATTGGACAAGAGGCTGCAGAAAAACATGTTAATCAAGCTATCTATTTTATTGGAATGGGTATGTTTGTTCATTAATTACGTTGCTCAGACTCTCCTGAAATACTCTCACGCATATCCATGTCAGATTCCTCGTTGGAAGATCTGATATGCACTTGTCGATATTTTTAAGAAGTTTAAACAACATATAAATAATACAAACGAATATTCGTTTGTTTTTCTCTGATCTGATATCAAGTTTGTCACATTTTCAAGGTAGCAATGACTATGTCAATAACTTCTTGCAACCCTTCTTAGCTGCTGGGCAACAATACACACATGATGAGTTTGTAGAGCTTCTAACCTCAACTTTAGGTGAACAATTCACAGTAAGTTATACAAAATTTAATATAATATTATCAGTGATACAAGATTTTATATCGAAAAAAATTAAAGATTAAACTTTTTTACACGATTAATTAACATTTATTTTTTTTTAATTTTCTTGAATATTTTAGAATCTTCATCAACTTGGAGCAAGAAAGATGATTTTTCATGGACTTGGACCATTAGGTTGTATTCCATCACAAAGGGTGAAGTCCAAAAGGGGAATATGTTTGAAACAAGTTAATTTATGGGTACAAGAATTCAACTCAAAAGTGGAAAAATTAATTGTCACTCTGAATAAACATCTACCATATGCACAAATATCATTTGCAAATACTTATCCAATTGTTCTTGACTTAATTGAGAACCCCACATCTTATGGTAAGCTCAAAATCATACACCTTTTTATACATTAGTTTTTGCTTATACAACTTATATACTTACTTTAAGTAGAAAGGTAATTCGAAAAAAAAAAAACATCTTTCGATATAAAACAAAGTCTAAGCATGTTTTTTTTGTAATCGAAAGAGGATAGGACATCTGAATATATTACTAGACATTTACATACATTAATAGATATTTGAATATATAGATGAGGAATATATCAGAATAATATCTGGATGTATAGGTGAGAAAAGTAAGCAAGAGGAGGATATATGTATCAGCAAAAGTGTAAGACATGTTCCTTTGTAACCGAAAGGGGATAGGACATATGAATACATACAGTACTAGACATTTGGATACATCAATAGATATCCGAATATATAGGTGAGAACTGTATCAGAGTAGTATCTGGATATATAGGTGAGGAATATATTAAATATTTTTTTAGTACGGAATTTTAGAGATCGTGATATAATAAAATGTATATTTAAGTGATTTTCTTTTTCAAAAACTTTTGATTAAAGATGGAAAAAAATACATATATTCCGACATAAATCATTATTGATCTTTCCTCTTTTCAATGACCAATAACCAATTTTGGATACAATTTTTTTTGTTTTTTTTTTTGTATTTATAGGTTTCAAGATATCAAATACATCATGTTGTAATGTAGACACAAGTGTTGGAGGATTATGTTTGCCAAATTCAAAACTATGTAATAATAGAACAGAATATGTATTTTGGGATGCATTTCATCCAACAGATGCAGCAAATGCAGTGCTTGCAGATAAAATTTTCACCAAATTATTTCATCAAGCCTCATCTAGCCCCGCGCCAGCACCAGCACCAACACCAACACCTCGAAAATTTCTTGTGACATCAAAAAATCTCAATTGAAAAAGC--AAATATCGTTTTAAGA-ACAAATATAATTATGTTTTCGTATTGCTTTTGTAATTTTTGAAAATACAAGACCAAAAAATTACTTGATTTATCCATCT</genome_strand>
        <mrna_strand>ATTCAATCGAAATTAATTTTCTCTACTTTTTGTAAGTTAGAACAAGCTTTTTTGAGTAGTTCAAAATGGCGAATTTAGGTCAAGTAATTGTTGGATTCTTGATTATTGGAATTGTTGCATATGTGGATTCAGCTGAAGAACAAGTTGCTACATATGTATTTGGTGACTCATTGACTGAAGTTGGGAACAATAATTATTTGCAATCATTAGCCAAATCTAATTTCCCATTTTATGGAATTGATTATGAAGGTGGAAAAGCTACTGGTAGATTCACTAATGGAAGGACTATTGGTGATATTATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAAACTTGGGGTTCAATCACCACCCCCATATCTTTCTTTAGCACCAAATGATGATGCAATTTTAAAAGGAGTGAATTATGCATCTGGTGGAGCTGGAATCCTCAATGACACTGGACTTTATTTT.........................................................................................ATTCAAAGAATGACATTTGATGATCAAATAAAGAGCTTTGAGAAGACAAAAGAAGCAATCAAGGCTAAAATTGGACAAGAGGCTGCAGAAAAACATGTTAATCAAGCTGTCTATTTTATTGGAATGG..................................................................................................................................................................................................GTAGCAATGACTATGTCAATAACTTCTTGCAACCCTTCTTAGCAGCGGGGCAACAATATACACACGATGAGTTTGTAGAGCTTCTAACCTCAACTTTAGGCGAACAATTCACA.................................................................................................................................AGGCTTCATCAACTTGGAGCAAGAAAGATGATTTTTCATGGACTTGGACCATTAGGTTGTATTCCTTCACAAAGGGTGAAGTCCACAAGGGGAATATGTTTGAAACAAGTTAATTTATGGGTACAAGAATTCAACTCAAAAGTGGAAAAATTGATTGCCACTTTGAATAAACATCTACCATATGCACAAATATCATTTGCAGATACTTATCCTATTGTTCTTGACTTAATTGAGAACCCCACTTCTTATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGATATCAAATACATCATGTTGCAATGTAGACACAAGTGTTGGAGGATTATGTTTGCCAAATTCAAAACTATGCAATAATAGAAGAGAGTATGTATTTTGGGATGCATTTCATCCAACAGATGCAGCAAATGCAGTGCTTGCAGATAAAATTTTCACCACATTGTTTCATCAAGCCTCATCTAGCCCCGCACCAGCACCAGCACCAACACCAACTCCTCGAAAGTTTCTTATGACATCGATAAATCTCGATTAAAAAAGCAAAAATATCAATACAAGAAAAAAATATAATTCTGTTTTCGTGTTGCTTTTGTAATTTTTGAAGATCGTATGCCAAAAAATTACTTGATTAGTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8529" ref_strand="+" ref_description="SGN-M8529 C2_At4g39880 [cosii_markers]">
      <seq>acttctccagctgaagaaatagagaatacagttttcactgacaaacgtgattcgtataattgtgatggggagtagattgggaagaagagttgtgaacttcgcaaatcttccaattaaacttctcatgccttcctctttctccaacatcactgagatctccctcaaaaccatcccctctgcttccaagattgagataaaaagggttttggagtctctctacggttttgaagttgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtcccattataatcggatgctgctagtttacttccaacaagttatatggagttctatgtttttttcttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="70441" stop="66448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70141" g_stop="70096" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68569" g_stop="68429" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="187" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67368" g_stop="66753" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="803" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="818"/>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-M8529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70141" e_stop="70096"/>
          <exon e_start="68569" e_stop="68429"/>
          <exon e_start="67368" e_stop="66753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAACGTAAGCTCCTCTATTTTCCCCTCCTATATTTTTACTTGTGTTAGTGTACTGCTGTGTTCTTTATTATACCTTATACGGTGTAACTCTTTGTGCATTGACCCTTATTGAACACTAAGATATTACCTTCAATAAAAGAACTTCACTAAAAGAACGTTACCTTTCTCAAAAAAAAAATTAAAAAAATTCACTAAATATTTGCCATCAGATGTCTGGCTTGGGAATTTGTTGAGTATGTTTTTATGTGATTCCCTTTTTTAAATACACGATTTAAAATGGTTTATCTGTTCATTTCCTCAATACTCCTTTTCCTTTAAGGAAATCCCACACTGGAAATAGCAAATGTTGTAGACCTGGGAGGACTTAATGAGGGTATATGCAGTTTGAAGTTTAGATTGTTTAGCTGGTGCCTGCATTCTCCATCCCTTTAAATGAAAAGAATCTTTGGAATGATGATTAAGGAGTATTCCATCTGATTTCAAGCTGATGCGTTACAAAAAAGCATAATAATTATTTTATTTTATTTTACTAAATCGGCAATTAGATAGTATAACGATTGCCTTGTAGTATGAGTATGACTTGTTGCTTATAGTCTTTCTATAACATGACAACCTGTAATCATTTTCTAATAATTTTTCTCACCTGCTGTATCTGTATACTCGTATTGGTGGGTAATGCTTTCTGTCAAGTGACTGACTGCTTTAGCCAACTGTGAAACTGACTTGATTATTTTAATTGGAAAGCCTTGGTGGTTACTAGTATTCGGAAGTTAGTCACCAAATTCTGTATCTTATATTGGTGTTAACAAGAAGATTGAATTAATCGGAGTCCGGAGATGATCCCCTGTATCGTCTTGCCTGTGAATTGAATAAGCTGACTGCTGTACGCAGGAATTTTTGTGAAATTTGAGGGAAAGGAAAACAAAGTCTAAAATATCCCATGAGTATTTAAAACAGCCAGAATTATTCAATGATTTTTCTTTTTGCTGTTATTTGGATTGTTTGATTTGTTCATCTATTTCTACATGTTTTGACATATATTAGTAAGGGTTTATTGCTTTTTAATCATGATTTTGCTTGTGTAGCTGTGGAAAGCTCGGGTTTTAGCTTTATTTAATGATTTTTTCTTTTGCTGGTTTTTGAATTGTTTGATTTGTTAATCTGTTTGTACATGTATTGGTAATCTTTTGTTGTTTTAATCATCTTTTGCTGTTGTAGCTGCGGAAGCTCATGTTTTTGTATTCAATTATTTTTGTTTTTGCTGGTTTTTGAGTTGTTTGATTTGTTCATCTGCTTGTATCATCTGTAAAATTGAGTGTACTATTTTGATTCTCTTAATTATTTTTTTCCATTGATTAACATGTTTTTGTTTTTCTATCAAATAGTTGAATATACAATGTACATTCGTTTTTGTCCACTTTGGACCTTCTCTTGCCATATGGTTTGGTGTGGTTCAACTACTGCTCAAGTATATCTCTCTGTATCATTTGTATATTTTGTTTTTTGGTTGCTAAAAGATTTCTATTGTAGGTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAGGTAACATATATTAATAATATTTATTAAACTACAAGAAGAACTACCCATCAATCTCAAACTAGTCGTCGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTTGGGTTTTATTACCCTTTGAAAGATTAATGTGTTTAAAATTTTCGAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGATCTTGAGACTTCCATAACTAATTGGATCTGATCTGCCTGTCTAGTTTTTGTGTTACCTTGTTGGTGTACGAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTATTTTAATGTTACTTTGAGGTTGTTCAAATTGCTTATTTCAAATCTGTTGCTGTATGAATAATGACGGGTTGAATGGGAACTGGGAAGTGCTGAGTTGTTTGTTTGCAATCCTTTGTGCTTCTTCCTGTTGTTTGATGTTTCTCTTAGCCCATCTGCAAAGCTGCTTAATATACTGGCCAATGTGCTGTCATCCTTTTGTTAATTTTAATTCGCCTGATTTGGGTCTTAGTCTGGTGATCGTGCAATAGTTATATAGATCCTACCAGTTAAATCTTTGCGTAGATGATTAGTTCTGCTTGTAGTATGAATTCAGATATCTGCCTGCGAAATCTTTGCAAAAATGAACAGAAATCTTTGCATATTGCTCGGAGGGGATCTACATTGCACACAAAGTAGTATTGGAAATTGTTCTCGTGAAAATAAATTGCTCTCTGATCTCTGCTCTTTTATTCTTAGAAGCTTTCTTGTTTTCTGGAATAAGAAGTGATGGTGAAATGTGTGTTTTTGGAGTAGTAGGTGAACTAGCTTTAGGTCACATGGTGATTTGAGTTAATAACTCATTGTCTCTCATGCTTTTTTCTCAAATGATTAGACTCCTATCATGAAATCTTTCAGTAAAAATCTCTATATTTCCCTCATGGTGCGTGCAAATAAATAATTTCTATATTTGTTGCTAGAAATGCATAATCTTGCTAGTCGGTGTTGAGTGCATCAGCTATATGAACTATTCTTGAACTTTGATGTATAGATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</genome_strand>
        <mrna_strand>ACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2200" ref_strand="+" ref_description="SGN-M2200 T1697 [cos_markers]">
      <seq>tgaaaaggtccaaacccttaacatggatggaaagaagaaaaagagaggtgggctgttaattgctaaaccagactacaaaaaagcttatgttactcttaggaatccattatctatatcgcccgaccttttccctatcggagtgatccaagaggaaaagaagaatatgagcaagaaatccaagtctagcattgttgaggatgatgaacctaagaagacgcattggcttgacgagaagaaagatggaaggaatcggtcagagatgagatttggtcgtggccgtgaccatcgtagtggacagcgttcagatgttggccgcgatcgtggtggagaaagtcgtgatgttggcgctgcaccagcaaagtttccttggagcagtatgaggtcttatgctcctaggtagatcattattgaatttttattgtgcctaagtagattatctttctcttcagaataattgaattttgtatcaatggttgctttggatcattggcattgtgtttagtcccattataatcggatgctgctagtttacttccaacaagttatatggagttctatgtttttttcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="67624" stop="66448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67324" g_stop="66753" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-M2200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67324" e_stop="66753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</genome_strand>
        <mrna_strand>TGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6630" ref_strand="+" ref_description="SGN-M6630 C2_At1g16560 [cosii_markers]">
      <seq>cttttacctttctcctcacttgctttggattctcctctcctttagccataaaaattggtgaattgaagaaatatgaatccctttgctaattgataaacaaatttgagtatccttttgtgaatctaacaagatggcagattgttattggatcactttctcggtagttttattttgtcttgttggagcttttgatgctagtgctggagatgctgaccctttgtacagggcttgttttggccaatgtaaagagaccggatgtgctggagaaacatgcttcggccattgcaatactcctttaaatagttcttcttctgatgacaactggtacttgaaagagcctctatacctgtggctgaaacaagcaaactgcctaagcgattgccagtatcactgcatgattcaaagagaaacagaacgagcaactcatggatttgggcctgtgaaatatcatgggaaatggccattcaaacgcgtctttgggcttcaggagcctgtttctgttgctttctctgcacttaaccttgcaatgcatctccatggatggctgtcctttatcacgcttatttactacaagttacgatcaaatgccgatgagacgacctgctacagttacacgagtttgtggcacatctatgcgttcttgtctattaattcatggttatggagtgctatcttccacggtcgagacatggattttacagaaaagctagactactcatctgctgtggcattacttggattttccctgattgtatcagtactaagaagtttcagtgtaaagaatgaggctacgagagttctggttgctgctccattgcttgccttcaccaccactcatatactgtacctgaacaactatcaaatggactacggatggaacatgaaagtttgtgttgtgatagctgtttctcaacttctaatttggtcaatctgggctggaataagccatcatccttcccggtggaagttgtggacggtggttgttggaggtggcctcgctatgctcctagagatctacgacttccctccatatcaaggactcgtagatgctcatgcactttggcatgccaccacaatccctcttacctatatctggtggagtttcatcaaggatgacgcgaagtttggaacttccaactcgagtaaaaaagacgagtagtgttttttgacagggttttaaagttttatattgcttgatcagttttttgacataagagagctatagcaagtactcaaatagtaactccttttatgttccttcttgcaagtagaggatgtttgtttgtgctagaaaaaatagaaatcaaagtttttcagcctatagaagagtgtcatattacttagaggcagattcaagattttaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0027B05-PfC97/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0027B05.1" temp_strand="-" temp_description="C11HBa0027B05.1  AC212314.1 htgs_phase:2 submitted_to_sgn_as:C05HBa0027B05 sequenced_by:ivf-caas upload_account_name:china11 phase2 sequence">
        <position start="110654" stop="104877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110354" g_stop="110225" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109992" g_stop="109898" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="225" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107289" g_stop="107028" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="487" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106915" g_stop="106719" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="684" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106521" g_stop="106334" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="872" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106333" i_stop="105673" i_length="661">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105672" g_stop="105169" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="1377" r_length="505" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0027B05.1" gen_strand="-" ref_id="SGN-M6630" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1376</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0027B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110354" e_stop="110225"/>
          <exon e_start="109992" e_stop="109898"/>
          <exon e_start="107289" e_stop="107028"/>
          <exon e_start="106915" e_stop="106719"/>
          <exon e_start="106521" e_stop="106334"/>
          <exon e_start="105672" e_stop="105169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAGGTAATTTGCTTGTCTAACCCTTTATTTCTTCCAAATTTTCAATTTCAAATGTAAAAATCAAATCTTGGACCTTTTTTTTTTCTTCAAATCTGGGGTTTGGAGTTAAAAATAAAATCTTGGAGCCTTTTTTCTATTTGGGGTTTGGAAGATAGAAACTAGTTTATTAAATTTGTGAGATGATATGTAAGATATGAGATTAAAGATTTGATTTTTATGAATTTTGTGATATCAGATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAGGTAACATTTTCTGATAATTTTGCCTTATGGTTAATCGAGGTAATGGTAAAGTGTGCGTATACACTACCCTTCCCAGACCGCACTTGTGGGATTCCATTGGGTATTTTGTTGTTTTATCTTATGCTTAGTATTTATGAGATTTTTCATTTTCTACTTTTGATTTTTAGTAGTTTAGGCCAAAGTGTAAAGATATAATATAGATTCATTTGAATGATTTGGAATCACAATTTATATGTGCATTAGTTTTTCTTGTTTTGAAAAAGGTAGTAATGTATTATATAAGAAGCACCAAGAAAGTCAATGGTATGTAAAATTGAGCAAAATCAAGAACCTATGATGAATCCCATTTTAATCTTGTAGGATCATAGGAAACTAAGTATAACTCGACTTCGTTCATGGGTTCCTCTTTACACCAAAAAAATGAACGAAGGCGTGCTGTTGAACTTGATCTGTTGAATCGAGTTAGCTTTATCTTTGAAGTATCTAGTATTCCTTTTCCTTCCAAATGGTCCACCAAGTGCATGTTGGAATGGTATTCCATTAGATTGCCTTCCCTTTCTTCCTTCTCGTTTTGTACTACAAGCGCAGCAAATATGTTGAGTTTTTGGGCATCCAAGGACGGATTGTGTGTAGGTTATCTTATCGATTGATCTGAATCCAGTAGCTTTGCTTGAACCCTGTATATGTGTTAGAAAATCTACAAGATAAGTAAAAATAGTAGATTTTGACCCCCGTAAATTAAATGGGATGGTAGAATCTGGAACTCGAATCCAAAATGTTTAAATCCTAGATCCATCTCTATGGCCATCAACTCTCCAAGACTTTCACTATGTCAAGAAATAGATGTGAAAGCTGGCAGCCACCTTACAATGAATGAACAGATGGCTCACATTTTCCAATTCAATTGCGCAAGGTTAACACCTGCTGCTTAACTTGAACACCTTCTTTGAAGATGTTCCCTTGTAAGCTACTTTGTAAGGAGCTTGAGTTTCCAGATCCTGAATTCTAGGATGGTTGTTTTCTGTTGCAGCTTGTGTCTAAGCTCTGTAGAGGGACTGAACCATGAAGATGCCATTACTGTGAGATTTCCATATCATTCTGGCAGAATTACTGTTGGAGTTTTGCAAAGGCTCCCGTTCCAGTGCAGTAACATTGACTTGGGGGAATCCTTTTCAGTGCTTTTTCGATACTCCTTTTTGACTTATAGTTTGTTGTGGAAAAGATTTAATCTTTTTCATACTCGAATGGCATCATTGAGGAAGGAACTGGTTAGCGACTTTAAGAATGATATACATTAGTATATTTGGGAGATCGGGTCGAGTAGGTTCCCAGTTAGAGTGTTTTAAGGTTCCATCATATCAATCAATTAAGCATCAGTCCCAATTAGTTAGGGTCGCCTGTATGAATCATATATATCTATTTCGTTCTTCAGGCCCATTTTTGTCCAATACTAACTATTGTCTTTAACCAAATGAGGGGTTCTCTAAAACTAGAAGTTCGTTATTCTCTTACTTATCTGAACATAGAAATACTAGTATCTGATTAGAATAAAATGGCTCATTACAAACACCAGATGTAATGGAAGTGTAACATCAACTGTTACGATTTGGTATGACTTGCATAGAAGGTTTGCTACTGTTCTGTTTTGTTCTTAGTTAAGTCCCTATATATTTTAAGAGATTATAGGTCTCTTTGAGATAGTCTTACTCTAGGTAACTTTGGTTTGACTTGACCTTCTACCACATTCATTCATCATAGCGTCTCATTTATGGACCTGTTGTATTGAGGTTTACATAAAATATGATAGATCTTCTCAGAAAACCTTCTCTCAACTATTATATGTTTTACTTATGCTCTCTATTAGATATGACCATTTTTAATCTTGTGTTACTTCACATCAATCTAAGCATCCATTTTTCATACAACAATCATCTTTAAAGGCCCAACAATCACAATTACAATACATTATTTGTCTCTCAAGTGATCTAAAGAACTTGCCTTTTACTCAACTTAGAGAAATCCCTTTTTTTTTCTGTATTAAGTTGAAATATCTACAATGACATAAGCTATAACTAATTACAACTATGCAAACATTATCTTTCTGTAAAGAGAAGGAAAATGCACTTATTATATGCACATTTTTTTATCAGAATGCCAAAGTAGTGGTACTGTCCCATTGTACCTAATCACGATTATGCAAACTCAAAAAAATTTGGGGTCTGCAGAGTTGGTTAGTTGGGGTGGGCAGATATATATAGCCTGGGAGATTGAGGAAAATGTTAGGGATGGGAAAAGAGTAAGAAGAGCATAGACAAGAATTTGTCAAGTTCTTGGTGTGCAAGGTCGAAGGCATTAAGACACTGGATTAAGCTCTTTCCAGTTTGTGATCACGAATTTTTGGTGTAAGCTCATTATACAGAGACTGAAAGGAAACAAAAGAAAAAAACGAGGTCCCCACACAAATGCAGTTCATCACGTTGGATATTGTGAATGATTGTGAAAAACTGGTCTTTTTTGTTTCTACTTCAATTCAGAAAAGTTCTACTCCTGTTCTCGTGCACTTAACAATCCAACACGATATTTTTGAATTATCATTTCTATGATTTAGGGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAGGTATGTTAATTAATGGCCCCGTTCTAAGTTCCAACAGCTTCAAGAAAGGTTCTCTCGCTTATGTATTCATATACATCGAGTATTAATCTGGAGTAACATCTTAATCTCTCAGGAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCGGTAAGTTTATGATTTGGCAGTCTTGGTAATGCTGATTTTGATTTCCTAACTTACCAATATATAGTTTGGGCTTTTCTTTATAATTGTATGCAGTTAGAATTTGTTGGCAGTGCCTGCCTATCTGGCTTGACGTTTATCTTTTCTTGCAATATTAGTTCAGCATACCAATTAAATTATTTTTTGTTTATTTATTGTAGAGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACGGTAATGTCATCATCTCTCCTGTTAAATTTACGACAAAATGTGCTTCCCTTGACAATAAGATATCGAGTGTATTTATGGAAAAACAAGCACCAGATACTTAATTAACTTGAGTAAGAAAGGATAAAATGCAATATTGATTTTGGGTTGAGTTATTTGCATTTTGATGTACAAGTTGATTATAAATTGCCGACGGTGAATCTTAATAGCTTAGTTGGTTGGGTACCTAAACTTTCACCTTGTTGCTTTGGGTTCGATTCTGAACCTAGTAATCCCCTCTCCCATTTCCCCTTCTCCTACCCCCCCCTTTTTTTTTTAAAAAAAAGGTCATAATTGCAGACTCTCGAAGTCAAGCAATACCAAATCAAATTTGGCGAGTAGTGGGGTCCTGAGCTAAGCCTTGGAAATCGTAATGCCATAATACTTTTCAAAACCCCCCTGATCATTATCATGGTCCTACTACAGTTATTCGTGCTAAGATGAATGCCTATGTTGTAGTGATTCCACCCAAACGGTCTTTATATGATCCTTCCGGCTCTCGGCTATTCTTGTTTGACATCATTTGTGTCTCAGAAAGGGTTGAAAAGTGTAGGAAGCTATTTCTTGTAGTCATGATTTCTTCTGGTGTTTATATCTGATGTTAATTTCTGTGATAAATTCTCAGGATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTG-TTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATAAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAACTAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTGCTTAGAAGCAGATTCAAGATTTTAATTTAACGGGTTCA</genome_strand>
        <mrna_strand>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCCTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG........................................................................................................................................................................................................................................ATGGCAGATTGTTATTGGATCACTTTCTCGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAGTTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG................................................................................................................GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG.....................................................................................................................................................................................................AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCATTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTGTTTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATCAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAAATAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTACTTAGAGGCAGATTCAAGATTTTAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="48027" PGL_stop="44985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48027" e_stop="47726"/>
            <exon e_start="47015" e_stop="46888"/>
            <exon e_start="46798" e_stop="46672"/>
            <exon e_start="46477" e_stop="46365"/>
            <exon e_start="46235" e_stop="45986"/>
            <exon e_start="45345" e_stop="44985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.756" acc_prob="0.992" e_score="0.940"/>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="0.961"/>
          <exon-intron don_prob="0.901" acc_prob="0.850" e_score="0.984"/>
          <exon-intron don_prob="0.995" acc_prob="0.965" e_score="0.956"/>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="0.960"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="48027" e_stop="47726" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.756" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47725" i_stop="47016" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="47015" e_stop="46888" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46887" i_stop="46799" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="46798" e_stop="46672" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.901" acc_prob="0.850">
            <gDNA_intron_boundary i_start="46671" i_stop="46478" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="0.956">
            <gDNA_exon_boundary e_start="46477" e_stop="46365" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.965">
            <gDNA_intron_boundary i_start="46364" i_stop="46236" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="46235" e_stop="45986" e_length="250"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="45985" i_stop="45346" i_length="640"/>
          </intron>
          <exon e_serial="6" e_score="0.892">
            <gDNA_exon_boundary e_start="45345" e_stop="44985" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48027" stop="47726"/>
              <exon start="47015" stop="46888"/>
              <exon start="46798" stop="46672"/>
              <exon start="46477" stop="46365"/>
              <exon start="46235" stop="45986"/>
              <exon start="45345" stop="44985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCACTCGAAACTAATTTCTCTACTTTTTATAAGTCAGAACGAACTTTTTCGAGTAGTACGAAATGGCGAATTTAGGTCAAGTAATTGTTGGATTGTTGATTATTGGAATTGTTGCATGTGTGGATTCAGCTGAAGAACAAGTTGTTACATATGTATTTGGTGATTCATTGACTGAAGTTGGGAACAATAATTATTTGCAATCATTAGCCAAATCTAATTTCCCATTTTATGGTATTGATTATGAAGGTGGAAAAGCTACTGGTAGATTTACTAATGGAAGGACTATTGGTGATATAATAT : CTGCAAAACTTGGGGTTCAATCACCACCTCCATATCTTTCTTTAGCACCAAATGATGATGCAATTTTGAAAGGGGTGAATTATGCATCTGGTGGAGCTGGAATTCTCAATGACACTGGAATTTATTTT : ATTCAAAGAATGACATTTGATGATCAAATAAAAAGCTTTGAGAAGACAAAAGAAGCAATCAAGGCTAAAATTGGACAAGAGGCTGCAGAAAAACATGTTAATCAAGCTATCTATTTTATTGGAATGG : GTAGCAATGACTATGTCAATAACTTCTTGCAACCCTTCTTAGCTGCTGGGCAACAATACACACATGATGAGTTTGTAGAGCTTCTAACCTCAACTTTAGGTGAACAATTCACA : AATCTTCATCAACTTGGAGCAAGAAAGATGATTTTTCATGGACTTGGACCATTAGGTTGTATTCCATCACAAAGGGTGAAGTCCAAAAGGGGAATATGTTTGAAACAAGTTAATTTATGGGTACAAGAATTCAACTCAAAAGTGGAAAAATTAATTGTCACTCTGAATAAACATCTACCATATGCACAAATATCATTTGCAAATACTTATCCAATTGTTCTTGACTTAATTGAGAACCCCACATCTTATG : GTTTCAAGATATCAAATACATCATGTTGTAATGTAGACACAAGTGTTGGAGGATTATGTTTGCCAAATTCAAAACTATGTAATAATAGAACAGAATATGTATTTTGGGATGCATTTCATCCAACAGATGCAGCAAATGCAGTGCTTGCAGATAAAATTTTCACCAAATTATTTCATCAAGCCTCATCTAGCCCCGCGCCAGCACCAGCACCAACACCAACACCTCGAAAATTTCTTGTGACATCAAAAAATCTCAATTGAAAAAGCAAATATCGTTTTAAGAACAAATATAATTATGTTTTCGTATTGCTTTTGTAATTTTTGAAAATACAAGACCAAAAAATTACTTGATTTATCCATCT</gDNA_template>
            <first_frame> I  H  S  K  L  I  S  L  L  F  I  S  Q  N  E  L  F  R  V  V  R  N  G  E  F  R  S  S  N  C  W  I  V  D  Y  W  N  C  C  M  C  G  F  S  *  R  T  S  C  Y  I  C  I  W  *  F  I  D  *  S  W  E  Q  *  L  F  A  I  I  S  Q  I  *  F  P  I  L  W  Y  *  L  *  R  W  K  S  Y  W  *  I  Y  *  W  K  D  Y  W  *  Y  N  I :   C  K  T  W  G  S  I  T  T  S  I  S  F  F  S  T  K  *  *  C  N  F  E  R  G  E  L  C  I  W  W  S  W  N  S  Q  *  H  W  N  L  F   : Y  S  K  N  D  I  *  *  S  N  K  K  L  *  E  D  K  R  S  N  Q  G  *  N  W  T  R  G  C  R  K  T  C  *  S  S  Y  L  F  Y  W  N  G :   *  Q  *  L  C  Q  *  L  L  A  T  L  L  S  C  W  A  T  I  H  T  *  *  V  C  R  A  S  N  L  N  F  R  *  T  I  H   : K  S  S  S  T  W  S  K  K  D  D  F  S  W  T  W  T  I  R  L  Y  S  I  T  K  G  E  V  Q  K  G  N  M  F  E  T  S  *  F  M  G  T  R  I  Q  L  K  S  G  K  I  N  C  H  S  E  *  T  S  T  I  C  T  N  I  I  C  K  Y  L  S  N  C  S  *  L  N  *  E  P  H  I  L  W :   F  Q  D  I  K  Y  I  M  L  *  C  R  H  K  C  W  R  I  M  F  A  K  F  K  T  M  *  *  *  N  R  I  C  I  L  G  C  I  S  S  N  R  C  S  K  C  S  A  C  R  *  N  F  H  Q  I  I  S  S  S  L  I  *  P  R  A  S  T  S  T  N  T  N  T  S  K  I  S  C  D  I  K  K  S  Q  L  K  K  Q  I  S  F  *  E  Q  I  *  L  C  F  R  I  A  F  V  I  F  E  N  T  R  P  K  N  Y  L  I  Y  P  S </first_frame>
            <second_frame>  F  T  R  N  *  F  L  Y  F  L  *  V  R  T  N  F  F  E  *  Y  E  M  A  N  L  G  Q  V  I  V  G  L  L  I  I  G  I  V  A  C  V  D  S  A  E  E  Q  V  V  T  Y  V  F  G  D  S  L  T  E  V  G  N  N  N  Y  L  Q  S  L  A  K  S  N  F  P  F  Y  G  I  D  Y  E  G  G  K  A  T  G  R  F  T  N  G  R  T  I  G  D  I  I   : S  A  K  L  G  V  Q  S  P  P  P  Y  L  S  L  A  P  N  D  D  A  I  L  K  G  V  N  Y  A  S  G  G  A  G  I  L  N  D  T  G  I  Y  F  :  I  Q  R  M  T  F  D  D  Q  I  K  S  F  E  K  T  K  E  A  I  K  A  K  I  G  Q  E  A  A  E  K  H  V  N  Q  A  I  Y  F  I  G  M   : G  S  N  D  Y  V  N  N  F  L  Q  P  F  L  A  A  G  Q  Q  Y  T  H  D  E  F  V  E  L  L  T  S  T  L  G  E  Q  F  T  :  N  L  H  Q  L  G  A  R  K  M  I  F  H  G  L  G  P  L  G  C  I  P  S  Q  R  V  K  S  K  R  G  I  C  L  K  Q  V  N  L  W  V  Q  E  F  N  S  K  V  E  K  L  I  V  T  L  N  K  H  L  P  Y  A  Q  I  S  F  A  N  T  Y  P  I  V  L  D  L  I  E  N  P  T  S  Y   : G  F  K  I  S  N  T  S  C  C  N  V  D  T  S  V  G  G  L  C  L  P  N  S  K  L  C  N  N  R  T  E  Y  V  F  W  D  A  F  H  P  T  D  A  A  N  A  V  L  A  D  K  I  F  T  K  L  F  H  Q  A  S  S  S  P  A  P  A  P  A  P  T  P  T  P  R  K  F  L  V  T  S  K  N  L  N  *  K  S  K  Y  R  F  K  N  K  Y  N  Y  V  F  V  L  L  L  *  F  L  K  I  Q  D  Q  K  I  T  *  F  I  H   </second_frame>
            <third_frame>   S  L  E  T  N  F  S  T  F  Y  K  S  E  R  T  F  S  S  S  T  K  W  R  I  *  V  K  *  L  L  D  C  *  L  L  E  L  L  H  V  W  I  Q  L  K  N  K  L  L  H  M  Y  L  V  I  H  *  L  K  L  G  T  I  I  I  C  N  H  *  P  N  L  I  S  H  F  M  V  L  I  M  K  V  E  K  L  L  V  D  L  L  M  E  G  L  L  V  I  *  Y  :  L  Q  N  L  G  F  N  H  H  L  H  I  F  L  *  H  Q  M  M  M  Q  F  *  K  G  *  I  M  H  L  V  E  L  E  F  S  M  T  L  E  F  I  L :   F  K  E  *  H  L  M  I  K  *  K  A  L  R  R  Q  K  K  Q  S  R  L  K  L  D  K  R  L  Q  K  N  M  L  I  K  L  S  I  L  L  E  W  :  V  A  M  T  M  S  I  T  S  C  N  P  S  *  L  L  G  N  N  T  H  M  M  S  L  *  S  F  *  P  Q  L  *  V  N  N  S  Q :   I  F  I  N  L  E  Q  E  R  *  F  F  M  D  L  D  H  *  V  V  F  H  H  K  G  *  S  P  K  G  E  Y  V  *  N  K  L  I  Y  G  Y  K  N  S  T  Q  K  W  K  N  *  L  S  L  *  I  N  I  Y  H  M  H  K  Y  H  L  Q  I  L  I  Q  L  F  L  T  *  L  R  T  P  H  L  M  :  V  S  R  Y  Q  I  H  H  V  V  M  *  T  Q  V  L  E  D  Y  V  C  Q  I  Q  N  Y  V  I  I  E  Q  N  M  Y  F  G  M  H  F  I  Q  Q  M  Q  Q  M  Q  C  L  Q  I  K  F  S  P  N  Y  F  I  K  P  H  L  A  P  R  Q  H  Q  H  Q  H  Q  H  L  E  N  F  L  *  H  Q  K  I  S  I  E  K  A  N  I  V  L  R  T  N  I  I  M  F  S  Y  C  F  C  N  F  *  K  Y  K  T  K  K  L  L  D  L  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47969" stop="47726"/>
                    <exon start="47015" stop="46888"/>
                    <exon start="46798" stop="46672"/>
                    <exon start="46477" stop="46365"/>
                    <exon start="46235" stop="45986"/>
                    <exon start="45345" stop="45086"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEMANLGQVIVGLLIIGIVACVDSAEEQVVTYVFGDSLTEVGNNNYLQSLAKSNFPFYGIDYEGGKATGRFTNGRTIGDIISAKLGVQSPPPYLSLAPNDDAILKGVNYASGGAGILNDTGIYFIQRMTFDDQIKSFEKTKEAIKAKIGQEAAEKHVNQAIYFIGMGSNDYVNNFLQPFLAAGQQYTHDEFVELLTSTLGEQFTNLHQLGARKMIFHGLGPLGCIPSQRVKSKRGICLKQVNLWVQEFNSKVEKLIVTLNKHLPYAQISFANTYPIVLDLIENPTSYGFKISNTSCCNVDTSVGGLCLPNSKLCNNRTEYVFWDAFHPTDAANAVLADKIFTKLFHQASSSPAPAPAPTPTPRKFLVTSKNLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="70141" PGL_stop="66753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70141" e_stop="70096"/>
            <exon e_start="68569" e_stop="68429"/>
            <exon e_start="67368" e_stop="66753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70141" e_stop="70096" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="70095" i_stop="68570" i_length="1526"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68569" e_stop="68429" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="68428" i_stop="67369" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67368" e_stop="66753" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70141" stop="70096"/>
              <exon start="68569" stop="68429"/>
              <exon start="67368" stop="66753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67324" stop="66753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCTCCAGCTGAAGAAATAGAGAATACAGTTTTCACTGACAAAC : GTGATTCGTATAATTGTGATGGGGAGTAGATTGGGAAGAAGAGTTGTGAACTTCGCAAATCTTCCAATTAAACTTCTCATGCCTTCCTCTTTCTCCAACATCACTGAGATCTCCCTCAAAACCATCCCCTCTGCTTCCAAG : ATTGAGATAAAAAGGGTTTTGGAGTCTCTCTACGGTTTTGAAGTTGAAAAGGTCCAAACCCTTAACATGGATGGAAAGAAGAAAAAGAGAGGTGGGCTGTTAATTGCTAAACCAGACTACAAAAAAGCTTATGTTACTCTTAGGAATCCATTATCTATATCGCCCGACCTTTTCCCTATCGGAGTGATCCAAGAGGAAAAGAAGAATATGAGCAAGAAATCCAAGTCTAGCATTGTTGAGGATGATGAACCTAAGAAGACGCATTGGCTTGACGAGAAGAAAGATGGAAGGAATCGGTCAGAGATGAGATTTGGTCGTGGCCGTGACCATCGTAGTGGACAGCGTTCAGATGTTGGCCGCGATCGTGGTGGAGAAAGTCGTGATGTTGGCGCTGCACCAGCAAAGTTTCCTTGGAGCAGTATGAGGTCTTATGCTCCTAGGTAGATCATTATTGAATTTTTATTGTGCCTAAGTAGATTATCTTTCTCTTCAGAATAATTGAATTTTGTATCAATGGTTGCTTTGGATCATTGGCATTGTGTTTAGTCCCATTATAATCGGATGCTGCTAGTTTACTTCCAACAAGTTATATGGAGTTCTATGTTTTTTTCTTCAA</gDNA_template>
            <first_frame> T  S  P  A  E  E  I  E  N  T  V  F  T  D  K   : R  D  S  Y  N  C  D  G  E  *  I  G  K  K  S  C  E  L  R  K  S  S  N  *  T  S  H  A  F  L  F  L  Q  H  H  *  D  L  P  Q  N  H  P  L  C  F  Q   : D  *  D  K  K  G  F  G  V  S  L  R  F  *  S  *  K  G  P  N  P  *  H  G  W  K  E  E  K  E  R  W  A  V  N  C  *  T  R  L  Q  K  S  L  C  Y  S  *  E  S  I  I  Y  I  A  R  P  F  P  Y  R  S  D  P  R  G  K  E  E  Y  E  Q  E  I  Q  V  *  H  C  *  G  *  *  T  *  E  D  A  L  A  *  R  E  E  R  W  K  E  S  V  R  D  E  I  W  S  W  P  *  P  S  *  W  T  A  F  R  C  W  P  R  S  W  W  R  K  S  *  C  W  R  C  T  S  K  V  S  L  E  Q  Y  E  V  L  C  S  *  V  D  H  Y  *  I  F  I  V  P  K  *  I  I  F  L  F  R  I  I  E  F  C  I  N  G  C  F  G  S  L  A  L  C  L  V  P  L  *  S  D  A  A  S  L  L  P  T  S  Y  M  E  F  Y  V  F  F  F   </first_frame>
            <second_frame>  L  L  Q  L  K  K  *  R  I  Q  F  S  L  T  N  :  V  I  R  I  I  V  M  G  S  R  L  G  R  R  V  V  N  F  A  N  L  P  I  K  L  L  M  P  S  S  F  S  N  I  T  E  I  S  L  K  T  I  P  S  A  S  K  :  I  E  I  K  R  V  L  E  S  L  Y  G  F  E  V  E  K  V  Q  T  L  N  M  D  G  K  K  K  K  R  G  G  L  L  I  A  K  P  D  Y  K  K  A  Y  V  T  L  R  N  P  L  S  I  S  P  D  L  F  P  I  G  V  I  Q  E  E  K  K  N  M  S  K  K  S  K  S  S  I  V  E  D  D  E  P  K  K  T  H  W  L  D  E  K  K  D  G  R  N  R  S  E  M  R  F  G  R  G  R  D  H  R  S  G  Q  R  S  D  V  G  R  D  R  G  G  E  S  R  D  V  G  A  A  P  A  K  F  P  W  S  S  M  R  S  Y  A  P  R  *  I  I  I  E  F  L  L  C  L  S  R  L  S  F  S  S  E  *  L  N  F  V  S  M  V  A  L  D  H  W  H  C  V  *  S  H  Y  N  R  M  L  L  V  Y  F  Q  Q  V  I  W  S  S  M  F  F  S  S  </second_frame>
            <third_frame>   F  S  S  *  R  N  R  E  Y  S  F  H  *  Q  T :   *  F  V  *  L  *  W  G  V  D  W  E  E  E  L  *  T  S  Q  I  F  Q  L  N  F  S  C  L  P  L  S  P  T  S  L  R  S  P  S  K  P  S  P  L  L  P  R :   L  R  *  K  G  F  W  S  L  S  T  V  L  K  L  K  R  S  K  P  L  T  W  M  E  R  R  K  R  E  V  G  C  *  L  L  N  Q  T  T  K  K  L  M  L  L  L  G  I  H  Y  L  Y  R  P  T  F  S  L  S  E  *  S  K  R  K  R  R  I  *  A  R  N  P  S  L  A  L  L  R  M  M  N  L  R  R  R  I  G  L  T  R  R  K  M  E  G  I  G  Q  R  *  D  L  V  V  A  V  T  I  V  V  D  S  V  Q  M  L  A  A  I  V  V  E  K  V  V  M  L  A  L  H  Q  Q  S  F  L  G  A  V  *  G  L  M  L  L  G  R  S  L  L  N  F  Y  C  A  *  V  D  Y  L  S  L  Q  N  N  *  I  L  Y  Q  W  L  L  W  I  I  G  I  V  F  S  P  I  I  I  G  C  C  *  F  T  S  N  K  L  Y  G  V  L  C  F  F  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70119" stop="70096"/>
                    <exon start="68569" stop="68429"/>
                    <exon start="67368" stop="66925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQFSLTNVIRIIVMGSRLGRRVVNFANLPIKLLMPSSFSNITEISLKTIPSASKIEIKRVLESLYGFEVEKVQTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDLFPIGVIQEEKKNMSKKSKSSIVEDDEPKKTHWLDEKKDGRNRSEMRFGRGRDHRSGQRSDVGRDRGGESRDVGAAPAKFPWSSMRSYAPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="110354" PGL_stop="105169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110354" e_stop="110225"/>
            <exon e_start="109992" e_stop="109898"/>
            <exon e_start="107289" e_stop="107028"/>
            <exon e_start="106915" e_stop="106719"/>
            <exon e_start="106521" e_stop="106334"/>
            <exon e_start="105672" e_stop="105169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.973" acc_prob="0.890" e_score="0.996"/>
          <exon-intron don_prob="0.818" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.962" e_score="0.995"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="110354" e_stop="110225" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110224" i_stop="109993" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="109992" e_stop="109898" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="109897" i_stop="107290" i_length="2608"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="107289" e_stop="107028" e_length="262"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.890">
            <gDNA_intron_boundary i_start="107027" i_stop="106916" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106915" e_stop="106719" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.818" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106718" i_stop="106522" i_length="197"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="106521" e_stop="106334" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.868" acc_prob="0.962">
            <gDNA_intron_boundary i_start="106333" i_stop="105673" i_length="661"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="105672" e_stop="105169" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110354" stop="110225"/>
              <exon start="109992" stop="109898"/>
              <exon start="107289" stop="107028"/>
              <exon start="106915" stop="106719"/>
              <exon start="106521" stop="106334"/>
              <exon start="105672" stop="105169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTACCTTTCTCCTCACTTGCTTTGGATTCTCCTCTCCTTTAGCCATAAAAATTGGTGAATTGAAGAAATATGAATCCTTTTGCTAATTGATAAACAAATTTGAGTATCCTTTTGTGAATCTAACAAG : ATGGCAGATTGTTATTGGATCACTTTCTTGGTAGTTTTATTTTGTCTTGTTGGAGCTTTTGATGCTAGTGCTGGAGATGCTGACCCTTTGTACAG : GGCTTGTTTTGGCCAATGTAAAGAGACCGGATGTGCTGGAGAAACATGCTTCGGCCATTGCAATACTCCTTTAAATAATTCTTCTTCTGATGACAACTGGTACTTGAAAGAGCCTCTATACCTGTGGCTGAAACAAGCAAACTGCCTAAGCGATTGCCAGTATCACTGCATGATTCAAAGAGAAACAGAACGAGCAACTCATGGATTTGGGCCTGTGAAATATCATGGGAAATGGCCATTCAAACGCGTCTTTGGGCTTCAG : GAGCCTGTTTCTGTTGCTTTCTCTGCACTTAACCTTGCAATGCATCTCCATGGATGGCTGTCCTTTATCACGCTTATTTACTACAAGTTACGATCAAATGCCGATGAGACGACCTGCTACAGTTACACGAGTTTGTGGCACATCTATGCGTTCTTGTCTATTAATTCATGGTTATGGAGTGCTATCTTCCACGGTCG : AGACATGGATTTTACAGAAAAGCTAGACTACTCATCTGCTGTGGCGTTACTTGGATTTTCCCTGATTGTATCAGTACTAAGAAGTTTCAGTGTAAAGAATGAGGCTACGAGAGTTCTGGTTGCTGCTCCATTGCTTGCCTTCACCACCACTCATATACTGTACCTGAACAACTATCAAATGGACTACG : GATGGAACATGAAAGTTTGTGTTGTGATAGCTGTTTCTCAACTTCTAATTTGGTCAATCTGGGCTGGAATAAGCCATCATCCTTCCCGGTGGAAGTTGTGGACGGTGGTTGTTGGAGGTGGCCTCGCTATGCTCCTAGAGATCTACGACTTCCCTCCATATCAAGGACTCGTAGATGCTCATGCACTTTGGCATGCCACCACAATCCCTCTTACCTATATCTGGTGGAGTTTCATCAAGGATGACGCGAAGTTTGGAACTTCCAACTCGAGTAAAAAAGACGAGTAGTGTTTTTGACAGGGTTTTAAAGTTTTATATTGCTTGATAAGTTTTTTGACATAAGAGAGCTATAGCAAGTACTCAAATAGTAACTCCTTTTATGTTCCTTCTTGCAAGTAGAGGATGTTTGTTTGTGCTAGAAAAACTAGAAATCAAAGTTTTTCAGCCTATAGAAGAGTGTCATATTGCTTAGAAGCAGATTCAAGATTTTAATTTAACGGGTTCA</gDNA_template>
            <first_frame> L  L  P  F  S  S  L  A  L  D  S  P  L  L  *  P  *  K  L  V  N  *  R  N  M  N  P  F  A  N  *  *  T  N  L  S  I  L  L  *  I  *  Q   : D  G  R  L  L  L  D  H  F  L  G  S  F  I  L  S  C  W  S  F  *  C  *  C  W  R  C  *  P  F  V  Q  :  G  L  F  W  P  M  *  R  D  R  M  C  W  R  N  M  L  R  P  L  Q  Y  S  F  K  *  F  F  F  *  *  Q  L  V  L  E  R  A  S  I  P  V  A  E  T  S  K  L  P  K  R  L  P  V  S  L  H  D  S  K  R  N  R  T  S  N  S  W  I  W  A  C  E  I  S  W  E  M  A  I  Q  T  R  L  W  A  S   : G  A  C  F  C  C  F  L  C  T  *  P  C  N  A  S  P  W  M  A  V  L  Y  H  A  Y  L  L  Q  V  T  I  K  C  R  *  D  D  L  L  Q  L  H  E  F  V  A  H  L  C  V  L  V  Y  *  F  M  V  M  E  C  Y  L  P  R  S  :  R  H  G  F  Y  R  K  A  R  L  L  I  C  C  G  V  T  W  I  F  P  D  C  I  S  T  K  K  F  Q  C  K  E  *  G  Y  E  S  S  G  C  C  S  I  A  C  L  H  H  H  S  Y  T  V  P  E  Q  L  S  N  G  L  R :   M  E  H  E  S  L  C  C  D  S  C  F  S  T  S  N  L  V  N  L  G  W  N  K  P  S  S  F  P  V  E  V  V  D  G  G  C  W  R  W  P  R  Y  A  P  R  D  L  R  L  P  S  I  S  R  T  R  R  C  S  C  T  L  A  C  H  H  N  P  S  Y  L  Y  L  V  E  F  H  Q  G  *  R  E  V  W  N  F  Q  L  E  *  K  R  R  V  V  F  L  T  G  F  *  S  F  I  L  L  D  K  F  F  D  I  R  E  L  *  Q  V  L  K  *  *  L  L  L  C  S  F  L  Q  V  E  D  V  C  L  C  *  K  N  *  K  S  K  F  F  S  L  *  K  S  V  I  L  L  R  S  R  F  K  I  L  I  *  R  V   </first_frame>
            <second_frame>  F  Y  L  S  P  H  L  L  W  I  L  L  S  F  S  H  K  N  W  *  I  E  E  I  *  I  L  L  L  I  D  K  Q  I  *  V  S  F  C  E  S  N  K  :  M  A  D  C  Y  W  I  T  F  L  V  V  L  F  C  L  V  G  A  F  D  A  S  A  G  D  A  D  P  L  Y  R :   A  C  F  G  Q  C  K  E  T  G  C  A  G  E  T  C  F  G  H  C  N  T  P  L  N  N  S  S  S  D  D  N  W  Y  L  K  E  P  L  Y  L  W  L  K  Q  A  N  C  L  S  D  C  Q  Y  H  C  M  I  Q  R  E  T  E  R  A  T  H  G  F  G  P  V  K  Y  H  G  K  W  P  F  K  R  V  F  G  L  Q  :  E  P  V  S  V  A  F  S  A  L  N  L  A  M  H  L  H  G  W  L  S  F  I  T  L  I  Y  Y  K  L  R  S  N  A  D  E  T  T  C  Y  S  Y  T  S  L  W  H  I  Y  A  F  L  S  I  N  S  W  L  W  S  A  I  F  H  G  R :   D  M  D  F  T  E  K  L  D  Y  S  S  A  V  A  L  L  G  F  S  L  I  V  S  V  L  R  S  F  S  V  K  N  E  A  T  R  V  L  V  A  A  P  L  L  A  F  T  T  T  H  I  L  Y  L  N  N  Y  Q  M  D  Y   : G  W  N  M  K  V  C  V  V  I  A  V  S  Q  L  L  I  W  S  I  W  A  G  I  S  H  H  P  S  R  W  K  L  W  T  V  V  V  G  G  G  L  A  M  L  L  E  I  Y  D  F  P  P  Y  Q  G  L  V  D  A  H  A  L  W  H  A  T  T  I  P  L  T  Y  I  W  W  S  F  I  K  D  D  A  K  F  G  T  S  N  S  S  K  K  D  E  *  C  F  *  Q  G  F  K  V  L  Y  C  L  I  S  F  L  T  *  E  S  Y  S  K  Y  S  N  S  N  S  F  Y  V  P  S  C  K  *  R  M  F  V  C  A  R  K  T  R  N  Q  S  F  S  A  Y  R  R  V  S  Y  C  L  E  A  D  S  R  F  *  F  N  G  F  </second_frame>
            <third_frame>   F  T  F  L  L  T  C  F  G  F  S  S  P  L  A  I  K  I  G  E  L  K  K  Y  E  S  F  C  *  L  I  N  K  F  E  Y  P  F  V  N  L  T  R :   W  Q  I  V  I  G  S  L  S  W  *  F  Y  F  V  L  L  E  L  L  M  L  V  L  E  M  L  T  L  C  T   : G  L  V  L  A  N  V  K  R  P  D  V  L  E  K  H  A  S  A  I  A  I  L  L  *  I  I  L  L  L  M  T  T  G  T  *  K  S  L  Y  T  C  G  *  N  K  Q  T  A  *  A  I  A  S  I  T  A  *  F  K  E  K  Q  N  E  Q  L  M  D  L  G  L  *  N  I  M  G  N  G  H  S  N  A  S  L  G  F  R :   S  L  F  L  L  L  S  L  H  L  T  L  Q  C  I  S  M  D  G  C  P  L  S  R  L  F  T  T  S  Y  D  Q  M  P  M  R  R  P  A  T  V  T  R  V  C  G  T  S  M  R  S  C  L  L  I  H  G  Y  G  V  L  S  S  T  V   : E  T  W  I  L  Q  K  S  *  T  T  H  L  L  W  R  Y  L  D  F  P  *  L  Y  Q  Y  *  E  V  S  V  *  R  M  R  L  R  E  F  W  L  L  L  H  C  L  P  S  P  P  L  I  Y  C  T  *  T  T  I  K  W  T  T  :  D  G  T  *  K  F  V  L  *  *  L  F  L  N  F  *  F  G  Q  S  G  L  E  *  A  I  I  L  P  G  G  S  C  G  R  W  L  L  E  V  A  S  L  C  S  *  R  S  T  T  S  L  H  I  K  D  S  *  M  L  M  H  F  G  M  P  P  Q  S  L  L  P  I  S  G  G  V  S  S  R  M  T  R  S  L  E  L  P  T  R  V  K  K  T  S  S  V  F  D  R  V  L  K  F  Y  I  A  *  *  V  F  *  H  K  R  A  I  A  S  T  Q  I  V  T  P  F  M  F  L  L  A  S  R  G  C  L  F  V  L  E  K  L  E  I  K  V  F  Q  P  I  E  E  C  H  I  A  *  K  Q  I  Q  D  F  N  L  T  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0027B05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110248" stop="110225"/>
                    <exon start="109992" stop="109898"/>
                    <exon start="107289" stop="107028"/>
                    <exon start="106915" stop="106719"/>
                    <exon start="106521" stop="106334"/>
                    <exon start="105672" stop="105386"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSFCESNKMADCYWITFLVVLFCLVGAFDASAGDADPLYRACFGQCKETGCAGETCFGHCNTPLNNSSSDDNWYLKEPLYLWLKQANCLSDCQYHCMIQRETERATHGFGPVKYHGKWPFKRVFGLQEPVSVAFSALNLAMHLHGWLSFITLIYYKLRSNADETTCYSYTSLWHIYAFLSINSWLWSAIFHGRDMDFTEKLDYSSAVALLGFSLIVSVLRSFSVKNEATRVLVAAPLLAFTTTHILYLNNYQMDYGWNMKVCVVIAVSQLLIWSIWAGISHHPSRWKLWTVVVGGGLAMLLEIYDFPPYQGLVDAHALWHATTIPLTYIWWSFIKDDAKFGTSNSSKKDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 20 chains have been computed
$ 
$ memory statistics:
$ 8112 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2028 bytes was the average size of a spliced alignment
$ 8264 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2754 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 24 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:51:50
-->
