SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 1122 16.3 0.0 7.8 C04HBa0069C22.1 1094 1399 (106272) C Copia00172 Copia (4659) 1968 1687 1 242 24.5 2.8 14.7 C04HBa0069C22.1 1566 1742 (105929) C Copia00172 Copia (4884) 1743 1588 2 280 3.9 0.0 0.0 C04HBa0069C22.1 7430 7481 (100190) + Gypsy00071 Gypsy 4080 4131 (8580) 3 289 21.0 0.0 0.0 C04HBa0069C22.1 11750 11811 (95860) + Unknown00034 Unknown 5145 5206 (3871) 4 467 23.3 6.5 3.2 C04HBa0069C22.1 12524 12678 (94993) C Gypsy00042 Gypsy (7160) 338 179 5 415 28.4 5.8 5.9 C04HBa0069C22.1 12537 13054 (94617) + Unknown00012 Unknown 1733 4933 (134) 6 * 1054 26.2 1.6 3.7 C04HBa0069C22.1 13436 13815 (93856) C Unknown00016 Unknown (3550) 1431 1060 7 2403 10.8 2.0 2.0 C04HBa0069C22.1 13855 14251 (93420) C Copia00153 Copia (2631) 4758 4362 8 242 24.7 1.3 1.3 C04HBa0069C22.1 14249 14326 (93345) + Copia00124 Copia 2188 2265 (3005) 9 * 381 23.2 14.1 3.6 C04HBa0069C22.1 14367 14558 (93113) + ATCOPIA29_I Unknown 981 1192 (2207) 10 * 443 27.5 5.0 0.7 C04HBa0069C22.1 14467 14605 (93066) + Copia00196 Copia 2406 2550 (2397) 11 * 4294 18.9 6.0 1.6 C04HBa0069C22.1 14604 15578 (92093) C Copia00110 Copia (1150) 12982 11966 12 * 7206 16.4 4.7 4.5 C04HBa0069C22.1 14742 16350 (91321) + Unknown00029 Unknown 1262 2873 (2836) 13 481 15.5 4.6 8.8 C04HBa0069C22.1 16703 16936 (90735) C Copia00110 Copia (2934) 11198 10892 12 351 21.1 9.9 5.8 C04HBa0069C22.1 16803 16973 (90698) + Unknown00029 Unknown 3165 3342 (2367) 14 * 243 27.0 2.7 0.0 C04HBa0069C22.1 20929 21002 (86669) C Copia00151 Copia (590) 10171 10096 15 320 19.4 0.0 0.0 C04HBa0069C22.1 24774 24835 (82836) + Unknown00034 Unknown 5145 5206 (3871) 16 969 13.3 2.7 3.2 C04HBa0069C22.1 24881 25067 (82604) C Unknown00046 Unknown (9541) 503 318 17 766 10.9 0.0 2.5 C04HBa0069C22.1 25507 25628 (82043) + Gypsy00043 Gypsy 513 631 (13263) 18 741 17.3 6.1 4.5 C04HBa0069C22.1 25524 25767 (81904) + Copia00110 Copia 13158 13437 (695) 19 * 881 15.2 0.8 11.2 C04HBa0069C22.1 25860 26110 (81561) + Copia00110 Copia 13333 13557 (575) 20 644 14.6 8.0 4.6 C04HBa0069C22.1 25985 26135 (81536) + Gypsy00043 Gypsy 1052 1207 (12687) 18 * 793 21.3 7.5 2.1 C04HBa0069C22.1 26156 26395 (81276) + Gypsy00043 Gypsy 1066 1318 (12576) 21 * 940 14.5 1.8 6.6 C04HBa0069C22.1 26384 26656 (81015) C Copia00172 Copia (4629) 1998 1739 22 1176 28.6 7.5 3.3 C04HBa0069C22.1 32274 32963 (74708) + Copia00124 Copia 1559 2277 (2993) 23 295 19.0 5.2 0.0 C04HBa0069C22.1 37290 37347 (70324) + Copia00196 Copia 2488 2548 (2399) 24 5335 21.2 6.2 5.5 C04HBa0069C22.1 37349 37739 (69932) C Copia00110 Copia (1151) 12981 11464 25 6292 17.7 3.8 4.8 C04HBa0069C22.1 37740 39224 (68447) + Unknown00029 Unknown 1597 3066 (2643) 26 5335 21.2 6.2 5.5 C04HBa0069C22.1 39225 39378 (68293) C Copia00110 Copia (2669) 11463 10868 25 332 16.9 3.4 0.0 C04HBa0069C22.1 43304 43362 (64309) C TS Unknown (2) 159 99 27 905 23.7 1.1 1.0 C04HBa0069C22.1 44885 45155 (62516) + Unknown00020 Unknown 164 371 (4834) 28 310 24.6 0.0 1.4 C04HBa0069C22.1 46288 46357 (61314) C Unknown00046 Unknown (9668) 376 308 29 423 22.8 12.1 3.5 C04HBa0069C22.1 46363 46503 (61168) C Unknown00046 Unknown (9666) 378 226 30 691 15.8 0.8 0.8 C04HBa0069C22.1 50629 50749 (56922) + TS2 Unknown 532 652 (3) 31 314 21.8 3.8 1.3 C04HBa0069C22.1 51403 51481 (56190) + Copia00151 Copia 10050 10130 (631) 32 230 20.0 1.7 0.0 C04HBa0069C22.1 51801 51860 (55811) C HELITRON7_OS Unknown (8459) 1694 1634 33 227 20.6 5.5 0.0 C04HBa0069C22.1 51813 51885 (55786) + Copia00105 Copia 481 557 (8300) 34 * 1850 15.7 4.7 4.5 C04HBa0069C22.1 53208 53688 (53983) C Copia00008 Copia (39) 5095 7 35 1298 16.9 1.6 1.2 C04HBa0069C22.1 53469 53720 (53951) + Copia00012 Copia 1 253 (4751) 36 * 3799 17.9 2.4 0.0 C04HBa0069C22.1 53716 54386 (53285) C Copia00013 Copia (451) 3290 2604 37 227 15.2 0.0 4.2 C04HBa0069C22.1 54385 54432 (53239) C Copia00173 Copia (1251) 3777 3732 38 * 1211 29.2 7.9 3.5 C04HBa0069C22.1 54433 55183 (52488) C Copia00013 Copia (1332) 2409 1626 39 * 3500 21.4 1.4 3.1 C04HBa0069C22.1 54509 55396 (52275) + Copia00110 Copia 12110 12981 (1151) 40 620 25.1 8.9 0.6 C04HBa0069C22.1 55398 55577 (52094) + Copia00012 Copia 2461 2655 (2349) 41 523 25.6 8.0 3.4 C04HBa0069C22.1 55410 55648 (52023) C ATCOPIA29_I Unknown (2172) 1227 978 42 * 823 18.9 12.1 1.3 C04HBa0069C22.1 55668 55898 (51773) C Copia00124 Copia (2972) 2298 2043 43 746 25.8 11.1 2.0 C04HBa0069C22.1 55905 56245 (51426) + Copia00012 Copia 3111 3482 (1522) 41 343 24.5 5.7 0.7 C04HBa0069C22.1 56123 56262 (51409) C Copia00124 Copia (3495) 1775 1629 43 * 304 29.0 10.3 8.4 C04HBa0069C22.1 56863 57182 (50489) C Copia00173 Copia (4014) 1014 689 44 227 20.0 3.9 7.8 C04HBa0069C22.1 57833 57935 (49736) + Copia00198 Copia 8043 8141 (215) 45 * 347 7.0 0.0 20.2 C04HBa0069C22.1 57852 57940 (49731) C Copia00063 Copia (3719) 197 127 46 633 18.4 7.0 9.4 C04HBa0069C22.1 58520 58836 (48835) C Copia00063 Copia (38) 5096 7 47 448 19.9 2.5 4.3 C04HBa0069C22.1 59294 59456 (48215) + Gypsy00205 Gypsy 2314 2473 (8839) 48 373 21.4 2.0 1.4 C04HBa0069C22.1 59445 59591 (48080) + Gypsy00205 Gypsy 2326 2473 (8839) 48 * 532 24.4 2.6 0.9 C04HBa0069C22.1 61154 61269 (46402) C TS2 Unknown (8) 647 530 49 528 21.4 1.5 0.8 C04HBa0069C22.1 61440 61571 (46100) + SONATA2 Unknown 2 134 (119) 50 445 25.0 2.0 0.0 C04HBa0069C22.1 64758 64905 (42766) + Gypsy00163 Gypsy 7746 7896 (851) 51 913 20.9 3.8 0.4 C04HBa0069C22.1 73147 73381 (34290) + SONATA1 Unknown 1 243 (0) 52 605 20.4 6.2 0.0 C04HBa0069C22.1 74060 74221 (33450) C Unknown00043 Unknown (9306) 2018 1847 53 367 20.7 1.1 0.0 C04HBa0069C22.1 77377 77463 (30208) + Gypsy00043 Gypsy 530 617 (13277) 54 231 21.5 0.0 12.2 C04HBa0069C22.1 83503 83576 (24095) + Unknown00046 Unknown 183 247 (9797) 55 788 27.5 3.1 1.2 C04HBa0069C22.1 83944 84197 (23474) + Unknown00034 Unknown 3766 4024 (5053) 56 1622 4.5 0.5 0.0 C04HBa0069C22.1 84628 84829 (22842) C Gypsy00069 Gypsy (2478) 3535 3333 57 1443 17.3 1.1 2.5 C04HBa0069C22.1 85013 85297 (22374) + Unknown00046 Unknown 213 493 (9551) 58 238 21.4 0.0 0.0 C04HBa0069C22.1 86050 86091 (21580) + LSU-rRNA_Ath Unknown 3325 3366 (9) 59 335 13.2 0.0 2.9 C04HBa0069C22.1 96165 96234 (11437) + Gypsy00080 Gypsy 9873 9940 (6) 60 985 22.7 0.0 1.2 C04HBa0069C22.1 96566 96886 (10785) + Gypsy00080 Gypsy 6 418 (9528) 61 660 22.5 4.4 5.3 C04HBa0069C22.1 97602 97826 (9845) + Gypsy00080 Gypsy 6644 6866 (3080) 62 1514 18.3 9.0 2.0 C04HBa0069C22.1 98184 98539 (9132) + Gypsy00080 Gypsy 9560 9940 (6) 63 1466 18.4 4.0 0.0 C04HBa0069C22.1 98917 99215 (8456) C Copia00151 Copia (4939) 5822 5512 64 234 29.5 2.6 3.5 C04HBa0069C22.1 100969 101084 (6587) + Copia00094 Copia 4454 4568 (1041) 65 771 15.5 8.0 2.0 C04HBa0069C22.1 103982 104132 (3539) + SINE_SO Unknown 1 160 (29) 66 431 17.6 1.1 2.3 C04HBa0069C22.1 104145 104231 (3440) + SINE_SO Unknown 67 152 (37) 67 325 17.3 15.2 2.3 C04HBa0069C22.1 106150 106271 (1400) + Copia00151 Copia 52 9643 (1118) 68