SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 272 4.5 0.0 1.7 C04HBa0044D11.1 362 421 (98743) + Gypsy00046 Gypsy 4126 6558 (2533) 1 228 16.7 0.0 0.0 C04HBa0044D11.1 369 434 (98730) C MuSHAN_MT Unknown (913) 3789 3724 2 * 504 21.0 0.8 3.9 C04HBa0044D11.1 566 694 (98470) C Copia00172 Copia (1313) 5314 5190 3 1308 25.9 5.5 4.4 C04HBa0044D11.1 6057 6597 (92567) + Unknown00057 Unknown 306 852 (2774) 4 1430 17.9 8.8 0.0 C04HBa0044D11.1 14654 14938 (84226) + Copia00110 Copia 2409 2718 (11414) 5 591 19.1 3.1 3.7 C04HBa0044D11.1 15801 15963 (83201) + Copia00151 Copia 8220 8381 (2380) 6 15800 13.2 1.9 2.6 C04HBa0044D11.1 19537 22656 (76508) C Gypsy00091 Gypsy (5818) 2729 1 7 7594 12.8 2.3 1.2 C04HBa0044D11.1 21518 22803 (76361) + Gypsy00018 Gypsy 4 1303 (6646) 8 * 424 34.8 4.0 3.9 C04HBa0044D11.1 22981 23021 (76143) C MTCOPIA1_I Unknown (29) 4880 4809 9 373 26.7 6.9 4.8 C04HBa0044D11.1 23022 23210 (75954) + Copia00098 Copia 74 266 (4414) 10 424 34.8 4.0 3.9 C04HBa0044D11.1 23211 24490 (74674) C MTCOPIA1_I Unknown (101) 4808 2533 9 2380 19.9 1.5 3.8 C04HBa0044D11.1 24498 25186 (73978) + Gypsy00155 Gypsy 4837 5963 (150) 11 319 21.2 0.0 1.5 C04HBa0044D11.1 25214 25280 (73884) + Unknown00002 Unknown 5631 5696 (4285) 12 * 320 27.0 0.0 0.0 C04HBa0044D11.1 25221 25294 (73870) C Gypsy00038 Gypsy (766) 6952 6879 13 1117 17.3 1.2 2.1 C04HBa0044D11.1 25301 25701 (73463) C Unknown00029 Unknown (585) 5124 4682 14 * 2718 21.1 3.1 5.5 C04HBa0044D11.1 25683 26451 (72713) + Gypsy00155 Gypsy 5889 6639 (10) 15 * 3162 24.6 5.1 4.4 C04HBa0044D11.1 25844 27109 (72055) C Unknown00029 Unknown (1072) 4637 3363 14 287 30.1 5.9 5.6 C04HBa0044D11.1 27728 27839 (71325) + Copia00183 Copia 2738 2953 (2634) 16 338 24.8 4.3 4.3 C04HBa0044D11.1 27840 28003 (71161) C COPIA1_ZM_I Unknown (3024) 1766 1603 17 287 30.1 5.9 5.6 C04HBa0044D11.1 28004 28065 (71099) + Copia00183 Copia 2954 3072 (2515) 16 340 33.0 6.2 3.9 C04HBa0044D11.1 28249 28278 (70886) + Unknown00049 Unknown 3891 4041 (4990) 18 448 32.6 4.9 2.3 C04HBa0044D11.1 28279 28626 (70538) C Copia00191 Copia (3320) 1406 1050 19 340 33.0 6.2 3.9 C04HBa0044D11.1 28627 28680 (70484) + Unknown00049 Unknown 4042 4317 (4714) 18 1176 11.0 3.1 1.0 C04HBa0044D11.1 29852 30044 (69120) + Unknown00034 Unknown 3693 3889 (5188) 20 372 26.4 4.5 3.0 C04HBa0044D11.1 31233 31365 (67799) C Unknown00040 Unknown (87) 4595 4461 21 * 1969 11.4 6.6 2.5 C04HBa0044D11.1 31346 31668 (67496) C Unknown00034 Unknown (5059) 4018 1 22 1186 12.9 1.5 0.0 C04HBa0044D11.1 33191 33391 (65773) + Gypsy00163 Gypsy 7736 7939 (808) 23 226 14.0 2.0 5.1 C04HBa0044D11.1 34334 34431 (64733) + Gypsy00071 Gypsy 4054 4148 (8563) 24 450 16.8 3.5 10.5 C04HBa0044D11.1 37527 37726 (61438) + Gypsy00163 Gypsy 8024 8209 (538) 23 355 23.6 18.0 2.5 C04HBa0044D11.1 38747 38907 (60257) + Copia00110 Copia 2226 2411 (11721) 25 * 782 20.9 13.8 0.0 C04HBa0044D11.1 38782 38977 (60187) C Unknown00040 Unknown (89) 4593 4371 26 597 19.3 1.4 0.0 C04HBa0044D11.1 38895 39074 (60090) + Copia00110 Copia 2715 2849 (11283) 25 * 504 22.9 9.3 4.4 C04HBa0044D11.1 42553 42735 (56429) C Copia00151 Copia (1137) 9624 9433 27 * 1066 18.1 1.3 1.7 C04HBa0044D11.1 42729 42959 (56205) C Copia00107 Copia (1828) 1209 980 28 1600 5.5 1.4 0.0 C04HBa0044D11.1 42983 43201 (55963) + Copia00145 Copia 1214 1435 (10984) 29 449 23.0 1.4 2.2 C04HBa0044D11.1 45092 45229 (53935) + Copia00172 Copia 376 512 (6115) 30 702 25.9 1.3 2.5 C04HBa0044D11.1 48638 48875 (50289) C SONATA1 Unknown (7) 236 2 31 814 17.7 1.8 1.8 C04HBa0044D11.1 52843 53009 (46155) + Copia00105 Copia 8185 8351 (506) 32 648 23.9 3.2 2.7 C04HBa0044D11.1 54445 54629 (44535) + ALIEN1_CA Unknown 1 186 (85) 33 916 23.8 5.7 2.7 C04HBa0044D11.1 55202 55534 (43630) + TS2 Unknown 3 345 (310) 34 541 26.7 2.4 1.2 C04HBa0044D11.1 55750 55915 (43249) + TS2 Unknown 533 2039 (3) 34 242 16.9 7.5 3.0 C04HBa0044D11.1 66122 66188 (32976) + Gypsy00056 Gypsy 1577 1646 (10504) 35 873 16.8 7.8 7.1 C04HBa0044D11.1 68081 68375 (30789) + Copia00089 Copia 1202 1498 (9958) 36 396 15.3 10.2 10.9 C04HBa0044D11.1 68408 68554 (30610) + Gypsy00155 Gypsy 5878 6023 (626) 37 429 20.7 4.7 5.4 C04HBa0044D11.1 69781 69928 (29236) + Gypsy00179 Gypsy 747 893 (4913) 38 382 14.9 0.3 0.9 C04HBa0044D11.1 70030 70107 (29057) + Gypsy00060 Gypsy 57 1118 (5624) 39 1135 26.7 5.2 9.6 C04HBa0044D11.1 71556 72353 (26811) + Gypsy00077 Gypsy 5083 6529 (18) 40 1501 22.3 9.1 7.0 C04HBa0044D11.1 72427 73087 (26077) + Gypsy00155 Gypsy 5347 6021 (628) 41 293 18.7 6.4 5.0 C04HBa0044D11.1 72977 73117 (26047) C Gypsy00191 Gypsy (683) 3565 3423 42 * 370 26.8 3.2 3.2 C04HBa0044D11.1 74359 74512 (24652) + Copia00151 Copia 2680 2833 (7928) 43 242 33.5 2.2 1.8 C04HBa0044D11.1 74786 75010 (24154) + Gypsy00176 Gypsy 692 917 (6711) 44 404 31.6 0.7 1.9 C04HBa0044D11.1 75284 75438 (23726) C Gypsy00176 Gypsy (5035) 2593 2441 45 348 22.4 3.0 3.0 C04HBa0044D11.1 76422 76522 (22642) C Copia00089 Copia (7677) 3779 3679 46 320 25.3 0.0 0.0 C04HBa0044D11.1 76514 76600 (22564) + Gypsy00177 Gypsy 3481 3567 (6738) 47 * 273 25.2 11.4 0.8 C04HBa0044D11.1 76692 76823 (22341) C Gypsy00062 Gypsy (6007) 515 370 48 419 31.5 3.9 2.2 C04HBa0044D11.1 78687 78868 (20296) + GYPSODE1_LTR Unknown 1067 1251 (1712) 49 526 27.4 4.5 2.4 C04HBa0044D11.1 80474 80720 (18444) + Gypsy00034 Gypsy 409 660 (6345) 50 417 33.9 2.6 2.6 C04HBa0044D11.1 80555 80787 (18377) C GYPSODE1_LTR Unknown (2332) 631 399 51 * 784 30.9 0.4 1.6 C04HBa0044D11.1 80774 81020 (18144) C GYPSODE1_LTR Unknown (2719) 244 1 51 587 20.4 1.2 4.3 C04HBa0044D11.1 83028 83191 (15973) + SINE_SO Unknown 1 159 (30) 52 893 29.7 4.0 2.8 C04HBa0044D11.1 84879 85373 (13791) + Gypsy00194 Gypsy 6718 7218 (1888) 53 569 31.4 2.5 0.7 C04HBa0044D11.1 85426 85710 (13454) C Gypsy00007 Gypsy (1691) 4804 4515 54 388 24.4 5.1 1.5 C04HBa0044D11.1 86002 86138 (13026) + Gypsy00046 Gypsy 9127 9268 (1803) 55 * 820 14.9 4.3 0.0 C04HBa0044D11.1 86017 86157 (13007) C Gypsy00086 Gypsy (6006) 1477 1331 56 * 17659 8.6 2.7 2.8 C04HBa0044D11.1 86157 88919 (10245) C Gypsy00151 Gypsy (5403) 6246 3485 57 11024 13.6 2.7 1.4 C04HBa0044D11.1 87641 89644 (9520) + Copia00112 Copia 5623 7652 (1235) 58 * 6879 10.6 4.9 1.5 C04HBa0044D11.1 89038 90159 (9005) C Gypsy00151 Gypsy (8149) 3500 2341 57 * 9117 20.3 5.3 5.6 C04HBa0044D11.1 90160 93141 (6023) C Gypsy00038 Gypsy (0) 7718 5 59 545 21.4 2.4 0.8 C04HBa0044D11.1 93152 93278 (5886) C Gypsy00038 Gypsy (6957) 761 633 60 * 5574 24.4 1.2 0.6 C04HBa0044D11.1 93278 94582 (4582) C Gypsy00190 Gypsy (462) 11920 10608 61 2160 24.8 3.5 2.7 C04HBa0044D11.1 94014 94648 (4516) + Gypsy00047 Gypsy 1306 1945 (3625) 62 * 11441 21.4 3.6 3.0 C04HBa0044D11.1 94648 97885 (1279) C Gypsy00177 Gypsy (1902) 8403 5145 63 2631 21.0 0.0 0.0 C04HBa0044D11.1 97890 98380 (784) + Gypsy00047 Gypsy 1944 2434 (3136) 62 1250 31.3 3.0 6.8 C04HBa0044D11.1 98400 99161 (3) + Gypsy00139 Gypsy 1758 2490 (7601) 64