SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 420 24.3 5.1 5.1 C04HBa0006D20.1 1072 1288 (146605) + Unknown00045 Unknown 3861 4077 (447) 1 * 2341 27.0 5.3 3.5 C04HBa0006D20.1 1095 2479 (145414) C Unknown00002 Unknown (1884) 8097 1643 2 1459 15.8 0.3 1.4 C04HBa0006D20.1 3743 4025 (143868) C Unknown00002 Unknown (2997) 6984 6705 3 1471 16.2 0.5 1.7 C04HBa0006D20.1 4028 4388 (143505) C Unknown00002 Unknown (3554) 6427 6030 3 1040 19.9 4.3 3.0 C04HBa0006D20.1 4274 4573 (143320) C Gypsy00163 Gypsy (8443) 304 1 4 * 6171 18.9 4.0 2.4 C04HBa0006D20.1 4426 5964 (141929) C Unknown00002 Unknown (4035) 5946 4383 3 798 18.3 2.3 1.1 C04HBa0006D20.1 5966 6142 (141751) C Gypsy00086 Gypsy (707) 6776 6598 5 256 36.1 0.6 0.0 C04HBa0006D20.1 6138 6295 (141598) C COPIA4_I_MT Unknown (3717) 4665 4507 6 * 1973 31.6 5.7 4.9 C04HBa0006D20.1 6289 8272 (139621) C COPIA4_I_MT Unknown (4083) 4299 2300 6 422 29.7 4.2 5.0 C04HBa0006D20.1 8438 8678 (139215) C COPIA-I_MT Unknown (6943) 2416 2178 7 385 30.9 1.4 2.2 C04HBa0006D20.1 9758 9979 (137914) + Copia00086 Copia 6131 6350 (506) 8 401 33.1 1.2 0.6 C04HBa0006D20.1 12685 12857 (135036) + Gypsy00077 Gypsy 5154 5327 (786) 9 371 29.0 5.5 4.0 C04HBa0006D20.1 13056 13256 (134637) + Gypsy00077 Gypsy 5496 5699 (414) 9 1002 21.3 5.3 5.3 C04HBa0006D20.1 13447 13518 (134375) + Gypsy00155 Gypsy 5355 5767 (882) 10 1011 20.9 18.1 6.4 C04HBa0006D20.1 13519 14004 (133889) + Copia00089 Copia 1112 1654 (9802) 11 1002 21.3 5.3 5.3 C04HBa0006D20.1 14005 14045 (133848) + Gypsy00155 Gypsy 5768 6000 (649) 10 3622 32.4 2.4 1.9 C04HBa0006D20.1 15445 18394 (129499) + Gypsy00132 Gypsy 1353 4366 (2183) 12 5132 23.6 3.0 4.7 C04HBa0006D20.1 18549 20495 (127398) + Gypsy00038 Gypsy 5801 7715 (3) 13 * 17667 22.5 4.0 4.3 C04HBa0006D20.1 19048 25151 (122742) C Gypsy00197 Gypsy (0) 8938 2228 14 4744 26.3 3.6 5.0 C04HBa0006D20.1 25385 27422 (120471) + Gypsy00038 Gypsy 4914 6924 (794) 15 2666 21.8 9.7 6.5 C04HBa0006D20.1 27418 28535 (119358) C Gypsy00114 Gypsy (5455) 2487 1335 16 * 1892 23.7 4.5 4.2 C04HBa0006D20.1 28570 29660 (118233) + Gypsy00112 Gypsy 89 7168 (512) 17 6780 20.9 5.7 3.3 C04HBa0006D20.1 29847 31652 (116241) C Gypsy00003 Gypsy (1696) 6697 4849 18 5119 17.9 3.6 3.9 C04HBa0006D20.1 31658 32859 (115034) C Unknown00050 Unknown (4433) 1198 1 19 4989 21.7 4.4 4.7 C04HBa0006D20.1 31690 33239 (114654) + Unknown00031 Unknown 2473 4018 (1093) 20 * 6085 23.0 8.2 6.0 C04HBa0006D20.1 32241 36317 (111576) C Gypsy00003 Gypsy (1696) 6697 1 21 1762 24.2 6.2 4.1 C04HBa0006D20.1 36308 37094 (110799) + Gypsy00038 Gypsy 6906 7709 (9) 22 * 701 21.3 5.4 4.7 C04HBa0006D20.1 37035 37310 (110583) C Gypsy00197 Gypsy (336) 8605 8328 23 * 424 34.9 4.1 4.1 C04HBa0006D20.1 37379 37796 (110097) + Gypsy00132 Gypsy 4959 5376 (1173) 24 443 25.0 3.3 1.6 C04HBa0006D20.1 38269 38437 (109456) + Gypsy00132 Gypsy 4578 5994 (555) 25 259 26.4 5.7 1.1 C04HBa0006D20.1 38779 38866 (109027) + Gypsy00089 Gypsy 3713 3804 (2104) 26 10501 29.9 4.8 3.3 C04HBa0006D20.1 40583 45833 (102060) + Gypsy00197 Gypsy 3559 8889 (52) 27 1098 26.6 6.4 8.2 C04HBa0006D20.1 45568 46520 (101373) C Gypsy00086 Gypsy (3944) 7051 214 28 1128 29.6 2.7 2.7 C04HBa0006D20.1 45971 46487 (101406) + Gypsy00177 Gypsy 4181 4697 (5608) 29 227 24.5 1.9 0.0 C04HBa0006D20.1 47856 47908 (99985) + Gypsy00202 Gypsy 8289 8342 (6093) 30 724 33.2 1.6 1.6 C04HBa0006D20.1 48379 48693 (99200) + GYPSODE1_LTR Unknown 333 647 (2316) 31 393 30.8 2.9 4.3 C04HBa0006D20.1 48517 48723 (99170) + Gypsy00176 Gypsy 7 210 (7418) 32 * 900 31.3 7.8 4.6 C04HBa0006D20.1 49078 49767 (98126) + GYPSODE1_LTR Unknown 1010 1721 (1242) 31 1100 25.9 8.5 6.2 C04HBa0006D20.1 50224 50906 (96987) + GYPSODE1_LTR Unknown 2265 2963 (0) 31 275 28.1 0.0 0.0 C04HBa0006D20.1 56755 56836 (91057) + Gypsy00071 Gypsy 3337 3418 (9293) 33 379 29.0 7.0 3.0 C04HBa0006D20.1 57508 57706 (90187) + Gypsy00046 Gypsy 3170 3376 (7695) 34 5655 20.2 0.5 0.0 C04HBa0006D20.1 57739 58825 (89068) + Gypsy00172 Gypsy 928 2019 (3894) 35 4256 25.8 7.3 6.1 C04HBa0006D20.1 58798 61530 (86363) + Gypsy00060 Gypsy 54 5687 (54) 36 6155 21.7 3.7 2.3 C04HBa0006D20.1 58813 60451 (87442) C Gypsy00090 Gypsy (3898) 1674 12 37 248 31.4 5.4 4.6 C04HBa0006D20.1 61648 61907 (85986) + Gypsy00127 Gypsy 1151 1412 (5135) 38 239 14.6 12.2 2.0 C04HBa0006D20.1 63076 63173 (84720) + Copia00089 Copia 4185 4292 (7164) 39 499 16.7 5.6 0.0 C04HBa0006D20.1 69332 69421 (78472) C Copia00194 Copia (3324) 6938 6844 40 * 1052 23.8 4.1 3.2 C04HBa0006D20.1 69346 69749 (78144) C Gypsy00019 Gypsy (4840) 1606 287 41 2977 23.4 0.3 1.8 C04HBa0006D20.1 71746 72418 (75475) C Gypsy00077 Gypsy (4696) 1417 755 42 9449 15.5 2.2 2.3 C04HBa0006D20.1 72422 74231 (73662) C Unknown00031 Unknown (3302) 1809 2 43 8194 18.7 2.1 5.7 C04HBa0006D20.1 72442 74446 (73447) C Gypsy00123 Gypsy (4879) 2868 935 44 * 6693 12.5 1.2 0.9 C04HBa0006D20.1 73447 74509 (73384) + Unknown00050 Unknown 3920 4985 (646) 45 * 6583 19.8 4.1 4.3 C04HBa0006D20.1 73612 76437 (71456) + Gypsy00059 Gypsy 1 2357 (6104) 46 * 2795 24.5 5.7 4.4 C04HBa0006D20.1 76427 77471 (70422) C Gypsy00155 Gypsy (5588) 1061 3 47 * 4018 22.2 7.0 7.6 C04HBa0006D20.1 76927 78607 (69286) + Unknown00029 Unknown 3362 5032 (677) 48 * 4773 23.0 6.0 4.7 C04HBa0006D20.1 77763 79326 (68567) + Gypsy00046 Gypsy 3164 4747 (6324) 49 320 31.5 0.7 0.7 C04HBa0006D20.1 79710 79859 (68034) + Gypsy00063 Gypsy 2270 2419 (8507) 50 298 8.3 0.0 1.6 C04HBa0006D20.1 80849 80909 (66984) C HELITRON7_OS Unknown (8461) 1692 1633 51 * 11749 10.4 1.9 6.3 C04HBa0006D20.1 80903 82967 (64926) C Gypsy00078 Gypsy (3063) 5044 3070 52 238 15.2 0.0 0.0 C04HBa0006D20.1 82965 83010 (64883) C Gypsy00168 Gypsy (6803) 1379 1334 53 * 552 26.9 10.6 5.8 C04HBa0006D20.1 83020 83481 (64412) C Copia00089 Copia (10066) 1390 907 54 438 29.6 15.5 2.5 C04HBa0006D20.1 83022 83569 (64324) C Gypsy00155 Gypsy (930) 5719 5101 55 * 266 25.3 1.0 12.1 C04HBa0006D20.1 83763 83861 (64032) C Copia00089 Copia (10836) 620 533 54 13963 13.1 1.4 0.5 C04HBa0006D20.1 88263 92369 (55524) + Copia00162 Copia 2 6497 (892) 56 15097 11.6 0.4 0.2 C04HBa0006D20.1 92385 94613 (53280) + Copia00162 Copia 2092 4324 (0) 57 432 25.2 0.8 0.8 C04HBa0006D20.1 95366 95485 (52408) C Copia00151 Copia (7925) 2836 2717 58 * 575 22.7 2.1 0.0 C04HBa0006D20.1 95379 95519 (52374) + Copia00172 Copia 3687 3830 (2797) 59 256 23.3 5.0 5.0 C04HBa0006D20.1 96412 96551 (51342) + Unknown00029 Unknown 4549 4688 (1021) 60 * 1001 21.1 10.3 7.2 C04HBa0006D20.1 96482 96926 (50967) C Copia00089 Copia (9804) 1652 1194 61 519 27.2 11.0 6.4 C04HBa0006D20.1 97000 97345 (50548) + Gypsy00046 Gypsy 4205 4566 (6505) 62 463 28.5 8.4 6.5 C04HBa0006D20.1 97020 97529 (50364) C Gypsy00077 Gypsy (312) 5801 5282 63 * 308 28.8 2.5 1.2 C04HBa0006D20.1 97462 97542 (50351) C Copia00089 Copia (10832) 624 543 61 * 889 32.0 7.8 2.9 C04HBa0006D20.1 97976 98602 (49291) + Gypsy00191 Gypsy 1324 1981 (2267) 64 1300 29.0 4.2 2.5 C04HBa0006D20.1 97995 98517 (49376) C Gypsy00127 Gypsy (1491) 5056 4525 65 823 21.0 1.1 1.6 C04HBa0006D20.1 98607 98790 (49103) + SINE_SO Unknown 2 184 (5) 66 469 32.0 0.0 2.5 C04HBa0006D20.1 98821 98980 (48913) C Gypsy00120 Gypsy (3295) 3073 2918 67 290 29.8 1.5 1.5 C04HBa0006D20.1 101063 101195 (46698) + ATLINE1_10A Unknown 3322 3454 (2216) 68 230 28.9 1.4 6.9 C04HBa0006D20.1 103557 103701 (44192) + Unknown00043 Unknown 9494 9630 (1694) 69 476 35.6 4.7 3.5 C04HBa0006D20.1 104122 104758 (43135) + Unknown00057 Unknown 2128 2772 (854) 70 632 24.9 7.5 8.2 C04HBa0006D20.1 108317 108330 (39563) + Unknown00019 Unknown 54 81 (14552) 71 1016 17.7 6.1 2.9 C04HBa0006D20.1 108331 108609 (39284) C Gypsy00043 Gypsy (12601) 1293 1006 72 766 18.0 12.2 6.1 C04HBa0006D20.1 108433 108710 (39183) C Copia00110 Copia (571) 13561 13267 73 * 632 24.9 7.5 8.2 C04HBa0006D20.1 108711 109005 (38888) + Unknown00019 Unknown 82 694 (13939) 71 1480 22.8 3.7 5.5 C04HBa0006D20.1 110190 110676 (37217) C Gypsy00155 Gypsy (995) 5654 5177 74 260 21.4 2.8 2.8 C04HBa0006D20.1 110875 110946 (36947) C Gypsy00155 Gypsy (1704) 4945 4874 74 * 389 22.5 2.2 1.1 C04HBa0006D20.1 110886 110975 (36918) C Copia00089 Copia (10834) 622 532 75 * 426 24.1 1.1 0.0 C04HBa0006D20.1 110900 110986 (36907) + Gypsy00046 Gypsy 4660 4747 (6324) 76 2880 23.7 4.9 2.6 C04HBa0006D20.1 110988 111831 (36062) C Copia00005 Copia (377) 4514 3652 77 362 26.4 7.0 1.9 C04HBa0006D20.1 111969 112238 (35655) C Copia00168 Copia (1780) 2876 2572 78 373 23.2 4.2 1.0 C04HBa0006D20.1 113148 113243 (34650) C Gypsy00046 Gypsy (6326) 4745 4647 79 584 24.4 8.8 3.7 C04HBa0006D20.1 113429 113722 (34171) C Gypsy00046 Gypsy (6541) 4530 4222 79 259 21.9 0.0 2.7 C04HBa0006D20.1 113910 113984 (33909) C Unknown00029 Unknown (428) 5281 5209 80 * 338 19.1 1.1 1.1 C04HBa0006D20.1 113918 114007 (33886) + Gypsy00077 Gypsy 5821 5910 (203) 81 317 27.1 0.0 0.0 C04HBa0006D20.1 114033 114102 (33791) C Gypsy00038 Gypsy (767) 6951 6882 82 281 22.8 5.8 2.9 C04HBa0006D20.1 114111 114214 (33679) C Unknown00029 Unknown (585) 5124 5018 80 * 460 23.2 6.2 0.0 C04HBa0006D20.1 114127 114238 (33655) C Gypsy00046 Gypsy (7010) 4061 3943 83 * 566 18.4 2.1 0.7 C04HBa0006D20.1 114236 114377 (33516) C Unknown00029 Unknown (798) 4911 4768 80 488 23.5 2.9 0.6 C04HBa0006D20.1 114378 114406 (33487) + Gypsy00155 Gypsy 5711 5885 (764) 84 919 17.1 3.3 4.7 C04HBa0006D20.1 114423 114698 (33195) C Gypsy00046 Gypsy (7501) 3570 3299 85 280 29.4 1.0 0.0 C04HBa0006D20.1 116231 116332 (31561) + Copia00153 Copia 6049 6151 (1238) 86 250 29.5 3.0 2.3 C04HBa0006D20.1 116333 116362 (31531) + Gypsy00052 Gypsy 71 203 (5604) 87 252 14.0 6.0 0.0 C04HBa0006D20.1 116513 116562 (31331) + Gypsy00060 Gypsy 62 114 (5627) 88 298 32.6 3.4 3.9 C04HBa0006D20.1 118322 118525 (29368) C Gypsy00090 Gypsy (4935) 637 435 89 * 545 30.3 0.4 2.9 C04HBa0006D20.1 118346 118583 (29310) + Copia00089 Copia 360 591 (10865) 90 252 34.6 0.0 0.0 C04HBa0006D20.1 118512 118592 (29301) C Gypsy00046 Gypsy (6324) 4747 4667 91 * 519 26.3 11.7 1.6 C04HBa0006D20.1 118797 119043 (28850) C Gypsy00046 Gypsy (6541) 4530 4259 91 277 27.2 7.7 1.0 C04HBa0006D20.1 119366 119469 (28424) C Gypsy00038 Gypsy (730) 6988 6878 92 1480 20.1 2.5 3.3 C04HBa0006D20.1 119487 119852 (28041) + Gypsy00155 Gypsy 5512 5874 (775) 93 978 17.1 2.6 5.8 C04HBa0006D20.1 119830 120146 (27747) C Gypsy00046 Gypsy (7372) 3699 3313 94 * 5144 23.9 9.9 6.2 C04HBa0006D20.1 121558 123843 (24050) + Copia00089 Copia 522 2892 (8564) 95 388 25.6 1.7 0.0 C04HBa0006D20.1 124315 124431 (23462) C Unknown00040 Unknown (177) 4505 4387 96 1467 7.3 0.0 3.5 C04HBa0006D20.1 125105 125432 (22461) + Copia00008 Copia 1 5115 (19) 97 356 28.7 0.0 0.0 C04HBa0006D20.1 126017 126103 (21790) + Copia00196 Copia 624 710 (4237) 98 349 28.2 0.0 7.1 C04HBa0006D20.1 126215 126340 (21553) + Copia00173 Copia 804 920 (4108) 99 1144 25.0 7.5 2.9 C04HBa0006D20.1 127111 127588 (20305) + Copia00124 Copia 1740 2239 (3031) 100 616 29.1 7.6 2.4 C04HBa0006D20.1 127623 127872 (20021) C Copia00012 Copia (2281) 2723 2461 101 3643 20.6 1.6 3.0 C04HBa0006D20.1 127874 128758 (19135) C Copia00110 Copia (1151) 12981 12110 102 518 26.0 9.7 1.8 C04HBa0006D20.1 128609 128835 (19058) + Copia00173 Copia 3453 3697 (1331) 103 * 292 16.4 0.0 3.5 C04HBa0006D20.1 128832 128888 (19005) + COP2_I_MT Unknown 5009 5063 (1239) 104 * 3522 19.3 2.5 0.5 C04HBa0006D20.1 128881 129553 (18340) + Copia00013 Copia 2604 3290 (451) 105 2894 8.8 0.2 1.3 C04HBa0006D20.1 129579 130067 (17826) + Copia00008 Copia 1 5115 (19) 106 568 20.1 3.6 1.2 C04HBa0006D20.1 131549 131714 (16179) + Unknown00025 Unknown 236 405 (5903) 107 622 21.5 9.3 7.7 C04HBa0006D20.1 131743 132055 (15838) + Unknown00029 Unknown 3595 3912 (1797) 108 527 23.6 2.1 2.1 C04HBa0006D20.1 132170 132312 (15581) + Copia00172 Copia 3688 3830 (2797) 109 774 20.0 7.6 4.7 C04HBa0006D20.1 132622 132980 (14913) + Gypsy00191 Gypsy 3281 3764 (679) 110 2179 24.2 3.6 10.4 C04HBa0006D20.1 133054 134176 (13717) C Gypsy00155 Gypsy (765) 5884 4838 111 1656 23.0 3.3 3.5 C04HBa0006D20.1 136280 136820 (11073) C Gypsy00046 Gypsy (6368) 4703 4164 112 * 2094 17.7 7.0 5.5 C04HBa0006D20.1 136414 137069 (10824) + Gypsy00077 Gypsy 5441 6106 (7) 113 1807 21.4 3.7 8.2 C04HBa0006D20.1 136441 137192 (10701) C Unknown00029 Unknown (118) 5591 4874 114 * 2845 22.0 3.3 3.2 C04HBa0006D20.1 137186 138002 (9891) C Gypsy00046 Gypsy (7983) 3088 2271 112 941 29.3 8.2 3.2 C04HBa0006D20.1 139599 140075 (7818) C Gypsy00180 Gypsy (5063) 3978 3042 115 276 22.3 14.7 1.1 C04HBa0006D20.1 140312 140406 (7487) C Gypsy00060 Gypsy (5607) 134 27 116 229 22.9 0.0 3.2 C04HBa0006D20.1 141970 142032 (5861) C Gypsy00174 Gypsy (5064) 218 158 117 307 34.6 8.8 6.0 C04HBa0006D20.1 142253 142981 (4912) + Unknown00057 Unknown 467 1215 (2411) 118 4782 19.1 3.8 1.4 C04HBa0006D20.1 146422 147462 (431) C Copia00005 Copia (247) 4644 3580 119 433 15.1 0.0 0.0 C04HBa0006D20.1 147461 147533 (360) C Copia00168 Copia (1565) 3091 3019 120 *