<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:54:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="8859" stop="7910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8559" g_stop="8209" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8559" e_stop="8209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGATAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGTCTTAACAAGAGAAAAGGTCTGGAGCAAATCGAGAGGGATGGGATAGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGAGGACTAGAGATCCTATAACCAGGCTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="17638" stop="16560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17338" g_stop="16860" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17338" e_stop="16860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGAAAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATACTGTTTTCTATTTTGAGTTAGCCGATGATATCTACTCAGTACCCGTGCTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGGGGAGTGCAGCAAACGTGTCGTCGTCTTCAACTCAACAGTAATTCTAGCCATTCTTCGTCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="17639" stop="16804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17339" g_stop="17102" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17339" e_stop="17102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGAAAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="44769" stop="17130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17830" g_stop="17430" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17830" e_stop="17430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCAGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAAATGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGACGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACTGACAAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547123" ref_strand="+" ref_description="SGN-E547123 [TUS-70-N12](-)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="26071" stop="27189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26371" g_stop="26889" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-E547123" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26371" e_stop="26889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTTAACTAGATGAGATACCTTGTTCACATGCAATTTTTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTACCAATGCCAGATAAGGAAGACTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCTTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTAAACACTTTGTGTTTACATAAATAAACTTACAAACATGTGGTAATTAAATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTAAA-TTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245630" ref_strand="+" ref_description="SGN-E245630 [cLEF-43-P3]">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="30551" stop="29047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30259" g_stop="29976" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29975" i_stop="29773" i_length="203">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29772" g_stop="29650" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29649" i_stop="29566" i_length="84">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29347" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E245630" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30259" e_stop="29976"/>
          <exon e_start="29772" e_stop="29650"/>
          <exon e_start="29565" e_stop="29347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATAGGCAAGGAAAACATCAATTTTCAGGCTAATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCAATTGATCTCGATGATATGGGCGGTGTAAATGAGGATGGTGGTGGTTTTTCTAGTAAAAATGGTGAACATCATATCGTTGACGATGCAGAGGATGTCGATGTGGATGGTGTTGGTGTTTCCGTAAATGAGGGTGAACAACTAGTCAGTGATAATCCAAAGGTAATGTTTATGATACATTGGGTATGTTGTGTATCATGCACATATAGTCAATGTTATGTATCATGGTCACTTTCTTTTTTCATTTTATATTCTGTCATGTATCATGCATATTTACTCAATACTATGTATCATGTGATTATAATCAATGTTACGTATCATCACAAATTATATTAACAATTTTTATTTCAAAACTGTATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGACGTTGATGACAATGTTCAGCACAACATCCCTCATGTTTTGCCTGAAAAAACAACAACGGATGCATAGGTACATTTTTTCAGTTTTGATTTATGACACACAATTTCATTACACACAAATTTATTTTAAAAATCATTACATCATATTATACAGGAATGTTCCACTTCAACAACAATATCACCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGCTAAAGATCCTACTAATGCTAGACCATTATATTCTTACGATCCGCAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGATATTCCAATAACGGAGATTGTTGTTAATACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTG---ATCCAAAG...........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG....................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543213" ref_strand="+" ref_description="SGN-E543213 [TUS-64-O16](-)">
      <seq>aatttggtatagatgattttgcattattaacaggacttaaggtcagaggaaataccaatgatttcaaatacccagaacaaactaattgtatgctttttaaaaagtatttccctggtgcagtcaatagtgttacaaagcatcaactagttcaaaggtttaagatgggtaattgggagagcaatcaggatgcactccaaatgtctatactgttctttattcatacatttgtattagcttctattgataacacagcgatatctattgtcgactttctaatggttgaagatggtagatatcaacattttccttggggtcagctatcattttccaaactaattggttcacttagacaggattttgacgttagtaaaaagttgtaccgattatatgggatgccatatgcactaaatgtttggatatacgaatgtgcatccaatttaaattcagaaatagttgtgagagaacgcaatgtcatcccaagaatatgcaattggagagttgtgtctgaaaaggcaaagtttgaaatgcttatgtccaccattttccaaaagttagaatgcatgttcaaacattgtcccaacagcagaggaaattgaagcttttgatattgctcaagttgaacatgctcattctacatcaataccattagtacaaccaaacgagcaagatgatttagatgatttctccacaagaccgccagaacagttattgaggacatattctagagtgtctgatacatctcctccaccaccgccaaaaaagaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="31814" stop="30338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31514" g_stop="30964" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30963" i_stop="30858" i_length="106">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30857" g_stop="30638" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="771" r_length="220" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E543213" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31514" e_stop="30964"/>
          <exon e_start="30857" e_stop="30638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTATAGATGAATTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTCAAAAGTATTTTCCTGGTGCAGTCACTAGTGTTACAAAGCATCAACTAGTTCAACAGTTTAAGATGGGTAATTGGGAGAACAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTACTCTTGATAATACAACTATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGATGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCTGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATGTGCAATTGGAGAGTTGTGTTTGAAAAGGCAAAGTTTGAAATGCTTGTGTCTACCATTTTCCAAGAGGTAAAATTTTATTTTTGTATATGGAATATCGTTATTTATGTCTTGTGATACATTATGAAATATTACTGTATCTAATTGTTAAATTATCTTATGTGTTGTGATACATTCAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGTTTTTGACCTTGCTCAAGTTGAACATGCTCATTCTTCATCACTACCATTAGTACAACCAAATGAGGAAGTTGATTTAGATAATTTCTCCACAAAACCGTCCGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAAAAGAAAAAAA</genome_strand>
        <mrna_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGTTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG..........................................................................................................TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318698" ref_strand="+" ref_description="SGN-E318698 [cTOB-9-B5]">
      <seq>ttgcgtaagtaattatacaaacaatgcccggaactctcaaactcaacaacgctcttgcctctatttattactacaattctcacaagccctataattggttgcgctcttttacctcccttaccggcaccggcatttctaactcctccatcaccgtcgctgccgctcacaagcgctactctttgtatattccgcccgacggtgattccccttcccgtcggaaattcctagggcgtttaggtcacggatatgctctaagaagtatttctactactcagatgggacccacccctgatcacaaggaggaggatctccgccgtgaaaaatcatctctccctataccctccaagtctgaaaagttgcttacattgcccacgattataacaattggccgtgtggctgctgttccgcttttggtaaccacattctatgttgatagctggtgggggccaaatgctacaacggctatatttattgcagcagctgtaactgactggcttgatggataccttgctcgcaagatgaacttaggaactgcctttggtgcgtttttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="33038" stop="39999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33338" g_stop="33757" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33758" i_stop="39463" i_length="5706">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.488" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39464" g_stop="39561" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="518" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39562" i_stop="39663" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39664" g_stop="39699" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="554" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-E318698" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33338" e_stop="33757"/>
          <exon e_start="39464" e_stop="39561"/>
          <exon e_start="39664" e_stop="39699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGTAAGTAATTATACAAACAATGCCCGGAACTCTCAAACTCAACAACGCTCTTGCCTCTATTTATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCAGTAAGTTTCTCAGCTATATTGTTGATCTGATAACTGTTGGACTACATCGGAACATTGAGGTTGATGCTTTTGTTAGTCATGCTTTACCTAAGCTAACTGACTAATGTATGCACCTCTACATTTCATTTTGTGAAATTGATTTTCTGCATTGTCCTAATCCCTTGAAAATCACGAATTGTATTCTTGTCAGGGAAATAGTAATTTGGAATGAGTATTCAAAGTTGACACTGGCAAGCTTACCCCTGTTCGAATTTTGGTTTAAGTTCAGTAGTAAATAGCAAACTGTCAGCTTTCCACAAATTGATGATATCTATGCACTAGGTAATTCGGGTATCCCCTTCGGAGGACTTAATAACTGTCTGATTGGTTACTTAAGCTAATATAGTGAAATATCAATTGTTTAGTGCTGCCTCTCAGAAGAGGCTAATTGACAAGGAAAAGTATGCCTGAGAACCTTAATGACGTCATTGAAGTGCACACTAAGCAATGCAAAACACTCTACAAATTTTGAAGCCTTGCTTCAGGGCCTAAGCACACCTTTGACAATATAGTGTGCTCCCAACTCTTGCAACATTCAACTTTCACTCCTCCTCACTAGTGCATAGTTGCACCTTCTCTTATCATGCTTGAACCATCTTAGCTGGCATCCCTCATCTTGTCCGCGGTCCGCCACAGGCCACTCCCATCTTTCCAGTATAACTTTGTTCCTAATACTATCCCTCTTAGTATGCCCACACATTCATGTGAACATCCTCATCTCTACCTCCATATTTTGAAAATGGGCATTCTTTACTAGCCAAAACTCAGCCCAATACTACAATAATCATACTTATAAAGATATAAGTTAAATAAAAACAAGAAAACATATTCATACCTTGATTGCTTATAGTCTGACCTTGATTTTCCTCTCTTCTTCCTCTTCCTCCCCCTTCCTGTCTCTTTCTGGTTCCACATTAGAGAGCTTCCTCTTATGCTTTATGTTCTAGAAAGCTTTAGCCTGAATAACTCTGATCCCCTTCAAAATGGTTTCTTATTTGGTGGTGTCCGGCCCACAGTATCATTATCTTCTTTTATTTTGGGCTAGTGATTATTGTGATTCCTCTTATTTTGGGTTGTTACAGCTTGTTTCACAGAATTGTTCAAGAGTCGGTGATATTCCAGTTAAAAACACTGCTAACTTGATTATCACTAACTCTTTCCAAAAGCTCCTTAGTCCTTATATTACGCATGAGGCCTGATTGACTTGGCATAACATGCACAAGAAGATGGTTTTTTTCTCTTCAACAGATTCCTCCAGTGTGAAAGGGAGGCTGAGGATGCTGGTCACCTATTTCTACACTGCAAGTATGTTTCACCACTTTTGTTTTTGCTGAAATGACCCATGCAAAAGGACTCAACTGAATTACTACAATGCTGGAGCTGAAAAGAATTGGACAAAGGATCCCTAACCAATATGGAATTCCAACCTTGTATGGATCTGGTGGGTAGCACGTAGGGAAAGGAAACTAAGACTTGTAGATGACATAATTAATAATATCAACAGCCTAATACACAGGGGTGCTCTTTGTTAGCCTTTTGGTGTAAAATGATTGATGTAAATGAGGTTGATATCCCTATAGGCCAACTTAATTCGTCAAATCATTAACTAACAAATTGAGTTTTGTACTGCAAAACTAGCATTGCAGCACCTCTTTTGTGCTTCTGTGAATCAATATAATCTTGCTTTTCAAGATAGTTAATGTTAAGAAAAGTTAAACAAGGTCTACACAATGTTAAGGTCAAGTTACAATGCCACGAGACCCTTTTTCACGTCTCTTCTATAAACAACTTCAGTCTCGTACACTGAAATGTAATGGCTATTGAAGTATTATGGCCGTACTTTGTTCCCTATTTATAGCTTCGCTTCTTAGTTGTTACACAACTTTTCTAGTGAGCAATAGAGTTTAGCATTAATAAAATTAAATGTCTATTGACTTTGAAGCATATAAGTAACCTAGTTAGAAGATTTCTTGTGTAACCTGATCTTTATTGGCCATATATGGGTTTGTGGGAACTTCTATGCCTTTATTTTTTTTTCTACTTTCATAGTTCTTTTTAATTCGAGTGTTACTATCCTCAAAAAATAATTCTTTTTTAATTTTGTATAGCTTTATAAGTTCTTTTTGGGAAAATTTTACTACTTATGGTCTAGGTAGGTCACAAGTCAATTAATCATTCAAGCTCGATACCAAACTAGTTAGGCTAGCCATAAAAAGTCTTTGATCTAGAAATTTCCCAAACTGTCCGGCCATTTCAATGGAAGAGAAAGTAAGTTTACGGTGTAACTTTGAAGAAGATGAAGTGTTGAGATGTCTCAAGCTACGTGCAATAGATAAAGCCCAAGGACCTGATGGTTTCACCATGGACTTTTACATTAAGTGTTGGGAGGTTGTTAAGCAGTAAATAATGAAGGCATTCCAATAATTCCACGAGCAAAAAGTGTTGGAAAGAAGATTCAATGCTACTTTTATTGCTCTCATTCCCAAGAAGAAGGTGCCATGGAGTTGAGGGATTATAGACCCACAAGTCTGATAGGCAGCATCTATAAAATCTTCTCCAAAGTCTTAACAATGACGGAAGGGGTGATGGAAAATCTAGTAGATTCTCAACAAATGACATTTATTAAAGGTAGACAGATCATGGATGCAGTCCTAGTGGCAAATGAAGCCGTAGGCTCAAGAACGAAGCATAAGAAGGAAGCAATATTGTACAAGCTTGACATTGAAAAAGCTTATGACCATGTTAATTGGGGATACTTGATGGATGTCCTTGAGAAGATGGGATTGGGGCTTAAGTGGACCAACTGGATAAAATTTTGTATATCTTCAGTAAAATTCTCTGTTTTGATTAATGGTGCTCCAACAGGATTCTTCGGAGTTCAAAGGGGCCTCAGGCAGGGGATCCTCCGTCCCTTTCCTGTTTTTGCTAGTTATGGAGGGAATCAACAACATGCTCAAAATAGCTAACACAAAATGGCTGGTTGAGAGGTTTTGATGTGGCTAGAGATGAAAGGGAAAGTTTAGAAGTGACTCATTTGCAATATGCAGATGACACACTCATCTTTTGTGGGGCAGAAGAAGAACAACTCAGATATCTTAGAGTAATATTGGTCATGTTTGAAGGAATCTCTGGGTTACATATTAATTTGAGCAAGAGTTTCCTTTATTCCATTAATGAAGTAAATAACATGGAGACACTGAACACTATCCTAGGTAGACAAGTTGGGGCTCTCCCAACTACATACTTTGGGATGCCTTTGGGTGCTAAATCAATGTCAAAAGAGATCTGGAACAATGTAATAGAGAAATGTGAGAAGAAACTGGCTAGATGGAAGGGGCAATACTTGTCTCTTGGAGGAAGAGTAACTTTTATCAACTCAGTTTTAGATGCTATGCCCACGTACATGATGTCTTTATTTCCCATTCCAGCAGGGTTACTGACAGATTGACAGGATCAGAAGGAAGTTCTTATGGAAGGGAAACAAGGATTGGAAAGGTTACAATCTGGTAAAGTGGACAGATCTGATAATACCAAAAAAGTATGGGGGTCTGGGATTAAAAAATTTGCAGAATCATAGTCAGGCTCTTAGAATGAAGTGGTTATGGAAGTATGCTAATGACAAACAACTGTTATGGGGAAAGGGACATTAAAAAGCCAAGTATGACAGAGAAAATAGATGGATGACAAAGGAAATAATCTCCCCATATGGAGTGAATCTGTGGAGATCTATAAGGGCCTTGTGGGATGACTTCAAGATCAATACCAAGGTTAAAGTCAAGAATGAGGAATAGACAGCTTTTGGGAAGATGACTGGCATGAAATAGGAGTTCTAAGGAATATCTATCCAGACATACACAATTTAATGCTAAACCAGCAAAGAACAATTGCTGAATTGTGGAAGCCTGATGGGTGGGAATCAATTTCAGAAGGCAATAAATGACTAGAAATCACAAGAGTTGCAGAATTCTTAAACACTATTGGACAATTTAAAGGAACACAAGTTGGTGGAAGGGCAGGGACAAAGGAATATTCAAGGTTGGCAATGCATAGAGATGGTTGAATAACCACAATCTACAGAATGTCAACTGGCCTTGGAAAACTATATGGAAGGTGAACATACCCTACAAGGTAGCATGTTTTACTTGGCTCCTATCTAAGGAAGTTGTCCTTATACAAGATAATCTGGTGAAAAAGGGATAACTTTATGTCCTAGATGTGTTTTTTGTGGAGAACAAGCAGAGATTGTTAGACATTTGTTCCTCCACTGCAAGTTCACAATCCAGCTTTGGAGGCTATTCTTGAACCTTAAAGGTTTCTCTTGGTCTATTCCGGGAAAGGTTATAGAGGCCTTGCAAAGCTGGGAAGAAGCTGGGTTCAAGCAAGAAGCAGAAGTAGGTGGAGAATCATACTAGCCGACATATGGTGGACAATTTGGAAGGAGAAGAATGCTAGGTGTTTTGAGAGCATAGAGAATAGTATAGAGCAAATCAAATTGAATTGTATCTTTATTCTATGTTTTTGGTGTAATGAGATCTGCTCTAATGATCCTGTATCTATTATTGATGTGTTAGACTCATTATAGACACAGGATCATAGGTTCTGGAATTGCTTGTATATGTACTGATCAGTTCGTATCAATATACACAAAGTTACCAATTTCGTTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAAGACTTTTTATATGCTGGCCATAAATCTATCACAAGCCTCCACTTTATCTGTGTTTGGGACTGGTTATGCATGAAGCTAATATATGTGTGAGTTCCATAGGTTACAAGTGACAGTGTCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTCTTTTTGTTTCCTTTGTCTTGCAAGTGTTGATGAAATAGAATATCTTTTTTCCTTTTTCTGATGAAGGTCAATACAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTGATAAATGAGTGTATACGTTGTTTGGTGTAATGAGATTTGGTCTAATGATCCTGTGTCTATTATTGATGTGTTAGACTCATTGTAGACATAGGATCAGAGGTTCTGGAATTACTTTTATATGTACTGATCAGTTTGTATCAATATACACAAAGTTACCAATTTAAAAAAAAAGTCTTTGATCAATTTCATTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAATACTTTTTATATGCTGACCATAAATCTGTCACAAACCTCCACTTTATCTGTGTTTGGGACTGGTTATGCGTGAGGCTAATATAGGTGTGAGTTCCACAGGTTACAAGTGACAGCGCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTTTTTTGTTTCCATTGCCTTGCAAGTGTTGGTGAAATAGAATATCTGTTTTCCTTTTTCTGATGAAGGTCAATAAAAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTAATAAATGAGTGTATATGTTGTTTGGCAATGGTAATCTGCATAAATAAAGCTGACCTTGTACTCTGTTTAATCTAGCATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAGGTTCTCATTTCTGCTGTTTTGAGTTCCATATTATCATCTCTTCTGGAATTCTTATTTTCCGTATTTGAAATATCACAATTTTAGATGGTTTGACATGCCCAGATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGAT</genome_strand>
        <mrna_strand>TTGCGTAAGTAATTATACAAACAATGCCCGGAACTCTCAAACTCAACAACGCTCTTGCCTCTATTTATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTATAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAG......................................................................................................ATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724015" ref_strand="+" ref_description="SGN-E724015 [FC22DC02]">
      <seq>gattactacaattctcacaagccctataattggttgcgctcttttacctcccttaccggcaccggcatttctaactcctccatcaccgtcgctgccgctcacaagcgctactctttgtatattccgcccgacggtgattccccttcccgtcggaaattcctagggcgtttaggtcacggatatgctctaagaattatttctactactcagatgggacccacccctgatcacaaggaggaggatctccgccgtgaaaaatcatctctccctataccctccaagtctgaaaagttgcttacattgcccacgattttaacaattggccgtgtggctgctgttccgcttttggtaaccacattctatgttgatagctggtgggggccaaatgctacaacggctatatttattgcagcagctgtaactgactggcttgatggataccttgctcgcaagatgaacttaggaactgcctttggtgcgtttttagatccagtggctgacaagttaatggttgctgctaccttggtcttgttgtgcaccaaacctttggagtccggtgtgttcggacagttgccatggctattaactgtcccttcgattgcgataataggcagggagataaccatgtctgcagttcgagaatgggcggcttctcagggtggtaaactttcagaggctgtagctgtgaataacctcgggaaatggaaaactgccacccagatgattgcattgaccatcctcctgctaaccagagatagcagtttatctggagctgcctctcttgtgggttccggtgtgatgttgctatatatatcagcgtggcttgctgtgtggtctctgttcgtttatatgagaaagatatggaaagtgttattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="33104" stop="46895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33403" g_stop="33757" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33758" i_stop="39463" i_length="5706">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.488" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39464" g_stop="39561" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="453" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39562" i_stop="39663" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39664" g_stop="39714" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="504" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39715" i_stop="39876" i_length="162">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39877" g_stop="39990" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="618" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39991" i_stop="46158" i_length="6168">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46159" g_stop="46215" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="675" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46216" i_stop="46296" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46297" g_stop="46382" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="761" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46383" i_stop="46478" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.575" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46479" g_stop="46595" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="878" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-E724015" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33403" e_stop="33757"/>
          <exon e_start="39464" e_stop="39561"/>
          <exon e_start="39664" e_stop="39714"/>
          <exon e_start="39877" e_stop="39990"/>
          <exon e_start="46159" e_stop="46215"/>
          <exon e_start="46297" e_stop="46382"/>
          <exon e_start="46479" e_stop="46595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCAGTAAGTTTCTCAGCTATATTGTTGATCTGATAACTGTTGGACTACATCGGAACATTGAGGTTGATGCTTTTGTTAGTCATGCTTTACCTAAGCTAACTGACTAATGTATGCACCTCTACATTTCATTTTGTGAAATTGATTTTCTGCATTGTCCTAATCCCTTGAAAATCACGAATTGTATTCTTGTCAGGGAAATAGTAATTTGGAATGAGTATTCAAAGTTGACACTGGCAAGCTTACCCCTGTTCGAATTTTGGTTTAAGTTCAGTAGTAAATAGCAAACTGTCAGCTTTCCACAAATTGATGATATCTATGCACTAGGTAATTCGGGTATCCCCTTCGGAGGACTTAATAACTGTCTGATTGGTTACTTAAGCTAATATAGTGAAATATCAATTGTTTAGTGCTGCCTCTCAGAAGAGGCTAATTGACAAGGAAAAGTATGCCTGAGAACCTTAATGACGTCATTGAAGTGCACACTAAGCAATGCAAAACACTCTACAAATTTTGAAGCCTTGCTTCAGGGCCTAAGCACACCTTTGACAATATAGTGTGCTCCCAACTCTTGCAACATTCAACTTTCACTCCTCCTCACTAGTGCATAGTTGCACCTTCTCTTATCATGCTTGAACCATCTTAGCTGGCATCCCTCATCTTGTCCGCGGTCCGCCACAGGCCACTCCCATCTTTCCAGTATAACTTTGTTCCTAATACTATCCCTCTTAGTATGCCCACACATTCATGTGAACATCCTCATCTCTACCTCCATATTTTGAAAATGGGCATTCTTTACTAGCCAAAACTCAGCCCAATACTACAATAATCATACTTATAAAGATATAAGTTAAATAAAAACAAGAAAACATATTCATACCTTGATTGCTTATAGTCTGACCTTGATTTTCCTCTCTTCTTCCTCTTCCTCCCCCTTCCTGTCTCTTTCTGGTTCCACATTAGAGAGCTTCCTCTTATGCTTTATGTTCTAGAAAGCTTTAGCCTGAATAACTCTGATCCCCTTCAAAATGGTTTCTTATTTGGTGGTGTCCGGCCCACAGTATCATTATCTTCTTTTATTTTGGGCTAGTGATTATTGTGATTCCTCTTATTTTGGGTTGTTACAGCTTGTTTCACAGAATTGTTCAAGAGTCGGTGATATTCCAGTTAAAAACACTGCTAACTTGATTATCACTAACTCTTTCCAAAAGCTCCTTAGTCCTTATATTACGCATGAGGCCTGATTGACTTGGCATAACATGCACAAGAAGATGGTTTTTTTCTCTTCAACAGATTCCTCCAGTGTGAAAGGGAGGCTGAGGATGCTGGTCACCTATTTCTACACTGCAAGTATGTTTCACCACTTTTGTTTTTGCTGAAATGACCCATGCAAAAGGACTCAACTGAATTACTACAATGCTGGAGCTGAAAAGAATTGGACAAAGGATCCCTAACCAATATGGAATTCCAACCTTGTATGGATCTGGTGGGTAGCACGTAGGGAAAGGAAACTAAGACTTGTAGATGACATAATTAATAATATCAACAGCCTAATACACAGGGGTGCTCTTTGTTAGCCTTTTGGTGTAAAATGATTGATGTAAATGAGGTTGATATCCCTATAGGCCAACTTAATTCGTCAAATCATTAACTAACAAATTGAGTTTTGTACTGCAAAACTAGCATTGCAGCACCTCTTTTGTGCTTCTGTGAATCAATATAATCTTGCTTTTCAAGATAGTTAATGTTAAGAAAAGTTAAACAAGGTCTACACAATGTTAAGGTCAAGTTACAATGCCACGAGACCCTTTTTCACGTCTCTTCTATAAACAACTTCAGTCTCGTACACTGAAATGTAATGGCTATTGAAGTATTATGGCCGTACTTTGTTCCCTATTTATAGCTTCGCTTCTTAGTTGTTACACAACTTTTCTAGTGAGCAATAGAGTTTAGCATTAATAAAATTAAATGTCTATTGACTTTGAAGCATATAAGTAACCTAGTTAGAAGATTTCTTGTGTAACCTGATCTTTATTGGCCATATATGGGTTTGTGGGAACTTCTATGCCTTTATTTTTTTTTCTACTTTCATAGTTCTTTTTAATTCGAGTGTTACTATCCTCAAAAAATAATTCTTTTTTAATTTTGTATAGCTTTATAAGTTCTTTTTGGGAAAATTTTACTACTTATGGTCTAGGTAGGTCACAAGTCAATTAATCATTCAAGCTCGATACCAAACTAGTTAGGCTAGCCATAAAAAGTCTTTGATCTAGAAATTTCCCAAACTGTCCGGCCATTTCAATGGAAGAGAAAGTAAGTTTACGGTGTAACTTTGAAGAAGATGAAGTGTTGAGATGTCTCAAGCTACGTGCAATAGATAAAGCCCAAGGACCTGATGGTTTCACCATGGACTTTTACATTAAGTGTTGGGAGGTTGTTAAGCAGTAAATAATGAAGGCATTCCAATAATTCCACGAGCAAAAAGTGTTGGAAAGAAGATTCAATGCTACTTTTATTGCTCTCATTCCCAAGAAGAAGGTGCCATGGAGTTGAGGGATTATAGACCCACAAGTCTGATAGGCAGCATCTATAAAATCTTCTCCAAAGTCTTAACAATGACGGAAGGGGTGATGGAAAATCTAGTAGATTCTCAACAAATGACATTTATTAAAGGTAGACAGATCATGGATGCAGTCCTAGTGGCAAATGAAGCCGTAGGCTCAAGAACGAAGCATAAGAAGGAAGCAATATTGTACAAGCTTGACATTGAAAAAGCTTATGACCATGTTAATTGGGGATACTTGATGGATGTCCTTGAGAAGATGGGATTGGGGCTTAAGTGGACCAACTGGATAAAATTTTGTATATCTTCAGTAAAATTCTCTGTTTTGATTAATGGTGCTCCAACAGGATTCTTCGGAGTTCAAAGGGGCCTCAGGCAGGGGATCCTCCGTCCCTTTCCTGTTTTTGCTAGTTATGGAGGGAATCAACAACATGCTCAAAATAGCTAACACAAAATGGCTGGTTGAGAGGTTTTGATGTGGCTAGAGATGAAAGGGAAAGTTTAGAAGTGACTCATTTGCAATATGCAGATGACACACTCATCTTTTGTGGGGCAGAAGAAGAACAACTCAGATATCTTAGAGTAATATTGGTCATGTTTGAAGGAATCTCTGGGTTACATATTAATTTGAGCAAGAGTTTCCTTTATTCCATTAATGAAGTAAATAACATGGAGACACTGAACACTATCCTAGGTAGACAAGTTGGGGCTCTCCCAACTACATACTTTGGGATGCCTTTGGGTGCTAAATCAATGTCAAAAGAGATCTGGAACAATGTAATAGAGAAATGTGAGAAGAAACTGGCTAGATGGAAGGGGCAATACTTGTCTCTTGGAGGAAGAGTAACTTTTATCAACTCAGTTTTAGATGCTATGCCCACGTACATGATGTCTTTATTTCCCATTCCAGCAGGGTTACTGACAGATTGACAGGATCAGAAGGAAGTTCTTATGGAAGGGAAACAAGGATTGGAAAGGTTACAATCTGGTAAAGTGGACAGATCTGATAATACCAAAAAAGTATGGGGGTCTGGGATTAAAAAATTTGCAGAATCATAGTCAGGCTCTTAGAATGAAGTGGTTATGGAAGTATGCTAATGACAAACAACTGTTATGGGGAAAGGGACATTAAAAAGCCAAGTATGACAGAGAAAATAGATGGATGACAAAGGAAATAATCTCCCCATATGGAGTGAATCTGTGGAGATCTATAAGGGCCTTGTGGGATGACTTCAAGATCAATACCAAGGTTAAAGTCAAGAATGAGGAATAGACAGCTTTTGGGAAGATGACTGGCATGAAATAGGAGTTCTAAGGAATATCTATCCAGACATACACAATTTAATGCTAAACCAGCAAAGAACAATTGCTGAATTGTGGAAGCCTGATGGGTGGGAATCAATTTCAGAAGGCAATAAATGACTAGAAATCACAAGAGTTGCAGAATTCTTAAACACTATTGGACAATTTAAAGGAACACAAGTTGGTGGAAGGGCAGGGACAAAGGAATATTCAAGGTTGGCAATGCATAGAGATGGTTGAATAACCACAATCTACAGAATGTCAACTGGCCTTGGAAAACTATATGGAAGGTGAACATACCCTACAAGGTAGCATGTTTTACTTGGCTCCTATCTAAGGAAGTTGTCCTTATACAAGATAATCTGGTGAAAAAGGGATAACTTTATGTCCTAGATGTGTTTTTTGTGGAGAACAAGCAGAGATTGTTAGACATTTGTTCCTCCACTGCAAGTTCACAATCCAGCTTTGGAGGCTATTCTTGAACCTTAAAGGTTTCTCTTGGTCTATTCCGGGAAAGGTTATAGAGGCCTTGCAAAGCTGGGAAGAAGCTGGGTTCAAGCAAGAAGCAGAAGTAGGTGGAGAATCATACTAGCCGACATATGGTGGACAATTTGGAAGGAGAAGAATGCTAGGTGTTTTGAGAGCATAGAGAATAGTATAGAGCAAATCAAATTGAATTGTATCTTTATTCTATGTTTTTGGTGTAATGAGATCTGCTCTAATGATCCTGTATCTATTATTGATGTGTTAGACTCATTATAGACACAGGATCATAGGTTCTGGAATTGCTTGTATATGTACTGATCAGTTCGTATCAATATACACAAAGTTACCAATTTCGTTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAAGACTTTTTATATGCTGGCCATAAATCTATCACAAGCCTCCACTTTATCTGTGTTTGGGACTGGTTATGCATGAAGCTAATATATGTGTGAGTTCCATAGGTTACAAGTGACAGTGTCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTCTTTTTGTTTCCTTTGTCTTGCAAGTGTTGATGAAATAGAATATCTTTTTTCCTTTTTCTGATGAAGGTCAATACAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTGATAAATGAGTGTATACGTTGTTTGGTGTAATGAGATTTGGTCTAATGATCCTGTGTCTATTATTGATGTGTTAGACTCATTGTAGACATAGGATCAGAGGTTCTGGAATTACTTTTATATGTACTGATCAGTTTGTATCAATATACACAAAGTTACCAATTTAAAAAAAAAGTCTTTGATCAATTTCATTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAATACTTTTTATATGCTGACCATAAATCTGTCACAAACCTCCACTTTATCTGTGTTTGGGACTGGTTATGCGTGAGGCTAATATAGGTGTGAGTTCCACAGGTTACAAGTGACAGCGCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTTTTTTGTTTCCATTGCCTTGCAAGTGTTGGTGAAATAGAATATCTGTTTTCCTTTTTCTGATGAAGGTCAATAAAAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTAATAAATGAGTGTATATGTTGTTTGGCAATGGTAATCTGCATAAATAAAGCTGACCTTGTACTCTGTTTAATCTAGCATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAGGTTCTCATTTCTGCTGTTTTGAGTTCCATATTATCATCTCTTCTGGAATTCTTATTTTCCGTATTTGAAATATCACAATTTTAGATGGTTTGACATGCCCAGATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGATCCAGTGGCTGACAAGGTATTCTCTATCGTTCTGTTTTCATTGGATCGTGCTTATTGCCTGCAATTTTGGATGGTGTAATTATCAAAATTTCCAGTAATAAGCATGAGATTTGGGGGGAAATATCCTTGTAAATATGATGTTTTATAATTGATATACCTGTCTTCTCAACTGCAACAGTTAATGGTTGCTGCTACCTTGGTCTTGTTGTGCACCAAACCTTTGGAGTCCGGTGTGTTCGGACAGTTGCCATGGCTATTAACTGTCCCTTCGATTGCGATAATAGGCAGGGAGGTGAGTGAGTGATAATCTGTATAAATTCATGTAACTGTATTTCGTTTAGCCTACTTTAGTTGTATTTGGTTATTTCTTGATACTTTATAGTCTCTAGATTAGAAATGGATGACCTCAAATTGACATAAGTTTCTTTCCACTACGGACTTGCATCTTTCATTTGTAGTGTTTTAATAACAATTTGGGAAAAAAAGTTCTTCAAGATTCATTGTTTTTTTTTTCAAAAAATGTTTTAAGTAAAAGTCACTCTGTTTCTTTCTGTTGAAGTTAAAATATACAGGCCTTTTTGATACTATTAGCTAGGGGTGGGCATAATAACAGGAAAATCGGATCGAACCGAATTAATTGGGTTCGGTTTTGGTACTAAATTTTTGAAACTTTGTATTGGGTTTGGTTCTCGGTATTAGTGCTCCTGTATTCTGGTTGACCAAAAAACCAAAATTTGCAAATGCTGTTTGGCTGTTTGCTTCATCTGCACGTTATAGCTAGCTGTTTGCTTTTCCCTTCTGCTGTAACAAAATTACAGTTATATGTAATCAGTGCTAAGTACTAACTTTTTTGAAGCTGCAGTGCTAAGTACTAACTGCCAAACTGCTTTAAGTGTTCATTGTATGAGACCCCTAAAGTGAACTCGGAAGTACTGGGAGACGAATAAAGTGAGGAGTATACATTCACCAGTTACAAAGTGAGAGAAGTGTGCACAAGCAGTTCATCGTTTGAAACTAGGATTACCTTAGATATGCACCAGTACTTTGAGTTGTTCGATAACATTCAATTATCAACTATAGGTATTCATGCCCTAAGTACTAAGGGGAAGTTTGGTGTGATGGATAAGGAAAAATGATCCTGGGATAAGTTTTTAGTTCCACTCAATTCTTTGTTTGGTTACGAAGTGTGGCATAACTTATCCAAGGATTAATAATTGTGAATTGAGATCTAAGTTGCTTGGACTCCGTGTAAGTGTTCGATACAGGTGCGGATCTAAAGGTCGGGTCATGATCTAATTTTTAAGATTCGGAGATATGAATCCATGTATGGATTTGGGTGTGGGGATTCACCTAAAAATAATTAGCATATCTAAAAATAGAGCTATAATACCTAAATTATGAGATATTATGAGGATAACTTGAGGAGAATTCTGGAAGGAGATCAAAGGAAAATGAGTGACATAGAAATTTTTATATTAAAGGTATTCCATTTCTTTCAATTTCACCTTACCTTTTGTATTGATTACATAAATCATTAAAATTGATCAGACTTTCCCATCGATTTTGGTCAAAGTACCCAAAATTGGTTGACCAATTGGACATATATCCCACACCCACACCCATGTCGTGTTGACACAGGTGCGGCACCAAAAGTGAAGAGTCCAAGCGACTTAGACTTAGATTAGTTATCCATATTTGTGGGTGGAATAGTAATACCGTGTTAACTTATCCCATATATAAAAGTAAAATAACAAAAGTTTCCCCTTAGACCCTCTTTTATACATCACTTTTACATTCATATATATTCAAAAAAAGTTTAATATCATTTATAATAAGATTCACAACCTTCACTATTTGTTACTTTTATGATAATATGTTTTTTCATTAGAGAATTACACTATATAAATATAATTTTTATTTATGAATATATTATGTATCGAATTTATTTGATTGATTCTTATGTTTATTTATATTTTGATTTCTCTTCAAATGTTCACTCCACTCTTGAATTACATATTTTTAATTAAAGTCTTTTAATCACTGGAAAATTTGTACTTATTTATCAATTAAAATGAAGATAACTTAAATATTTACAATATGAGTGTGATATGTGCTTAAATAAAGTGACATCAATAATAAAATCTCTTTTACGTTAACAAACTTAAGATGAAAATTTTATTTTTAAGCTAAATAAGATGGAAGATCTATATTTTAAAACAAACGGCGCAATCATGAGAATGCACATGCAAATATATTTGAGTTAACTAAGATGAAATTATTTTAAGAATGAATTACTAAAGCTTGCGAAGGAAGTAACAAAAACTAAATAAGGTGGAGAGTGTTTTTGTAAACAAACAACTTATTCTTAGAAATTATGCAACACATATTATTTTGAATATGTTAAACCAAACAATCAATAAAAAATAATCCAACATAACTTATCTCATCGTAACTAATCCCAACATAATTTGTTTTCAAACCAAACGGCCCCTAATTAATTTGAACAAAAATTTAAGTTCAGAAGAACCTAACCAAAGATCGGAACACCCACCCTTAATTAGCACCCTACATGATCTCTCTGTGAAAACTTAGGTAGAAACTTTCTAGTCACTAATGGGGGTTTTGGTGTAAAGTAGAATATTTTTGTGCCCTTTCCCAAATATGAATTTCTTTGTGGCAATAAGGTGGAATATTTTATGATGTATTTGGGGAAAAATAAAATAAAATGGTAGTATCGTTTTTGATACATCTAGGTTATAGCTTGCACATTGGATTGACTGTTTTCCAACTTTCCTATGTCAACTTTGACTAGGCTAGTTAACCCTCTATGCTGTTTCATATCATGTTTTTTTGACTGAAAACAACGTTTTAAGATGATAATTTGTCTTATATATCATATAAGTGATAGTGGAGTTTTTTTTAATAAAAATGAATAGTTGAGAAGTTAGGTTGATAGGAAAATATTAAGTTTAAAACTTAATATATTTATGAATTTGAATTTTGGAGAGTTGTGAATGTTTTATAAACGTCCCAAGATGTCAAGATGGGAAGTATTAGAAACTGAAACAAAAGGAGTCTAGTTTTAGCACAAGTAATTTTGTAGCTTTACATTGAATTGAAGTTTAGAACTGTTTTAAAAATTAAAAAAATTAAAAATAAATAATAAAATTTAGAAATGTTCATGTTTTGGCAAGTTATCAGTGAGGTATGGTTATTCAAAGTCATGCAGAAAAGTAACCTCATTGTGTGGTGGGACAAGAGATTATAATCCCAGGATAAATTGTGGGATTATCTTATCCCATAGTTAGTACTCTCTCTGTGACAATTTATGTTAGCTCTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAACAGAAAATAATGCGGAAGACTTAACTCATTAATAAAAACCAATTCAATAACTATCAATATTCAACATCTACTATTCTCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATTACTAGACTAAGAGTATTCTAAAAGCTAAAACAAGTAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAGGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCCCCCTGAAGATCCGATGTGACGAAGACTGACTAGAGTTGCGGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAATTAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTATAGTTACCATAACCCTTGGTTACAACACCAAGTACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTATCATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTTGGAACGCGACACCCGATCCATATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTTATTTATTCACAATTACATAATCACATCATTCATGCAAGCATACAATTAAGCATATAGAAGGTTTACAATACTACTAACACATATCATTCGCTATTAAGAGTTTACTATGAATAGCCTGAAATAACCATAACCTACCTCCACCGAAGAATTGAAATCAAGTAAGTTAATCCTCAAAGCTTGGTGTTTTCCTCTTCTTCTCGATCGTTCCTCTCTCAATTCGTTTCTCTTTCCTTCTCTTTGTTCTTTCTAATTTTCTTTATTCAACCCTCTTTCTTTTACCCTAATTAATATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATGTAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCAAAAACGTCCCTTAAAACGTGTAAGGAAATCCGATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCTGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGGTCAGAGAGTCAATTTCCACTGAACAATCTATGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGTTCCCTGTACCAAATTCTCAAGAGTTGAAGTGTTTTGAAACGGTGGATCACGACGGTCCGTCGTGCCTATGACGGTCCGTCCTGCGTGTCCGTCACAGAGTTCAGAGAGTCGATTTCAGCACCCAAATTTCAGAATTTCTAAGTGTTTTGGGACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGTTCCGTCATGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGCCGTTACAAGCTCTTGTAACTTTTCAAGATTCAAACTATGCAAAAGTTGACCAACATTTTAAAATGTATTTTCTTTTAATTATATTGACATGTGATGAATTCCAGCTTATAGAGTTTTCTTTCTGTATAATTCTTTAATATCTTAATTTTAATCTTAAAATATTGAGTTGATCTATATTTAAATTTAGATATTCAATTTGACAAAAAGTGCCACATAAATTGCGATAGGAAGGGAATGCACTCTTTGATTCCGGGATAGGCAATCCCGAGATTGGTTATACCACCACTGTGGTATTATTTTTACTCCACGCTTCATATGGGATAACAATGCCGGGATTTTTTATACCACAATTATGGTATTATTTTACACCAGGCTTCTTTTGGGATAACAACCCTGGAATAGAACATGTCAAAATTTACTTACCCGAAGTTTTTCTCCCATAGAAATAGAGCTTTATCTCCATTTCTCTTATTTTAAGTCAAACATCTACCGGTAGAAGTTATAATATACTATAACTGCATTATAATCCTGGATAACTTGTTCCATAACCAAAAAAGTTAATTAGCAAACACACTTGACGATATGGGTGCAAGTCTATTGTACATTTTCACAAACTTCATTAACACTACAGTTGAAATGTTCACCTATACCTTGCCATTTGAAGTTTAGGGCAACAATTTTTTTCCTTAGCACTCACTTCTGATACTTTGGTGATATGCCTTTTTCAAATTTAACATGGAAGTTTCTGTAACTCAAGGGATGATATACTAAACAAATGTTCTAATTGGGGATACCTTTTTGTTTTTACTTATTTTTCCTTTGATATATGTATCTTGTGTCTCAATGATCTCTTTGCATCTTACTGATAAAAAACATCTCTTTGCATCTTTGGTTTGTCGGATTTGGTTGATAAGTGGTCAATAATGATTTTTGGTTTTTGTTGCAAATTCGTTTTGTAGATAACCATGTCTGCAGTTCGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCATGACCACCTTCCATTTTATTTATAGAATAATTCCTTGTGCTTTATTTATTTCATTAGTGACTGTTAAAATTTTCAGGCTGTAGCTGTGAATAACCTCGGGAAATGGAAAACTGCCACCCAGATGATTGCATTGACCATCCTCCTGCTAACCAGAGATAGCAGGTAACTCTTGTTTTCAGTCTCCTGTATGAATTTGTTGAAACAAAAATTTTTGATAGAAATCTGATAATACTTTGACCATGTAATTATTCTCTTTAGTTTATCTGGAGCTGCCTCTCTTGTGGGTTCCGGTGTGATGTTGCTATATATATCAGCGTGGCTTGCTGTGTGGTCTCTGTTCGTTTATATGAGAAAGATATGGAAAGTGTTATTGAT</genome_strand>
        <mrna_strand>GATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAATTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAG......................................................................................................ATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGATCCAGTGGCTGACAAG..................................................................................................................................................................TTAATGGTTGCTGCTACCTTGGTCTTGTTGTGCACCAAACCTTTGGAGTCCGGTGTGTTCGGACAGTTGCCATGGCTATTAACTGTCCCTTCGATTGCGATAATAGGCAGGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319720" ref_strand="+" ref_description="SGN-E319720 [cTOB-12-K19]">
      <seq>tccatcaccgtcgctgccgctcacaagcgctactctttgtatattccgcccgacggtgattccccttcccgtcggaaattcctagggcgtttaggtcacggatatgctctaagaagtatttctactactcagatgggacccacccctgatcacaaggaggaggatctccgccgtgaaaaatcatctctccctataccctccaagtctgaaaagttgcttacattgcccacgattttaacaattggccgtgtggctgctgttccgcttttggtaaccacattctatgttgatagctggtgggggccaaatgctacaacggctatatttattgcagcagctgtaactgactggcttgatggataccttgctcgcaagatgaacttaggaactgcctttggtgcgttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="33181" stop="39996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33481" g_stop="33757" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33758" i_stop="39463" i_length="5706">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.488" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39464" g_stop="39561" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="375" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39562" i_stop="39663" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39664" g_stop="39696" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="408" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-E319720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33481" e_stop="33757"/>
          <exon e_start="39464" e_stop="39561"/>
          <exon e_start="39664" e_stop="39696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCAGTAAGTTTCTCAGCTATATTGTTGATCTGATAACTGTTGGACTACATCGGAACATTGAGGTTGATGCTTTTGTTAGTCATGCTTTACCTAAGCTAACTGACTAATGTATGCACCTCTACATTTCATTTTGTGAAATTGATTTTCTGCATTGTCCTAATCCCTTGAAAATCACGAATTGTATTCTTGTCAGGGAAATAGTAATTTGGAATGAGTATTCAAAGTTGACACTGGCAAGCTTACCCCTGTTCGAATTTTGGTTTAAGTTCAGTAGTAAATAGCAAACTGTCAGCTTTCCACAAATTGATGATATCTATGCACTAGGTAATTCGGGTATCCCCTTCGGAGGACTTAATAACTGTCTGATTGGTTACTTAAGCTAATATAGTGAAATATCAATTGTTTAGTGCTGCCTCTCAGAAGAGGCTAATTGACAAGGAAAAGTATGCCTGAGAACCTTAATGACGTCATTGAAGTGCACACTAAGCAATGCAAAACACTCTACAAATTTTGAAGCCTTGCTTCAGGGCCTAAGCACACCTTTGACAATATAGTGTGCTCCCAACTCTTGCAACATTCAACTTTCACTCCTCCTCACTAGTGCATAGTTGCACCTTCTCTTATCATGCTTGAACCATCTTAGCTGGCATCCCTCATCTTGTCCGCGGTCCGCCACAGGCCACTCCCATCTTTCCAGTATAACTTTGTTCCTAATACTATCCCTCTTAGTATGCCCACACATTCATGTGAACATCCTCATCTCTACCTCCATATTTTGAAAATGGGCATTCTTTACTAGCCAAAACTCAGCCCAATACTACAATAATCATACTTATAAAGATATAAGTTAAATAAAAACAAGAAAACATATTCATACCTTGATTGCTTATAGTCTGACCTTGATTTTCCTCTCTTCTTCCTCTTCCTCCCCCTTCCTGTCTCTTTCTGGTTCCACATTAGAGAGCTTCCTCTTATGCTTTATGTTCTAGAAAGCTTTAGCCTGAATAACTCTGATCCCCTTCAAAATGGTTTCTTATTTGGTGGTGTCCGGCCCACAGTATCATTATCTTCTTTTATTTTGGGCTAGTGATTATTGTGATTCCTCTTATTTTGGGTTGTTACAGCTTGTTTCACAGAATTGTTCAAGAGTCGGTGATATTCCAGTTAAAAACACTGCTAACTTGATTATCACTAACTCTTTCCAAAAGCTCCTTAGTCCTTATATTACGCATGAGGCCTGATTGACTTGGCATAACATGCACAAGAAGATGGTTTTTTTCTCTTCAACAGATTCCTCCAGTGTGAAAGGGAGGCTGAGGATGCTGGTCACCTATTTCTACACTGCAAGTATGTTTCACCACTTTTGTTTTTGCTGAAATGACCCATGCAAAAGGACTCAACTGAATTACTACAATGCTGGAGCTGAAAAGAATTGGACAAAGGATCCCTAACCAATATGGAATTCCAACCTTGTATGGATCTGGTGGGTAGCACGTAGGGAAAGGAAACTAAGACTTGTAGATGACATAATTAATAATATCAACAGCCTAATACACAGGGGTGCTCTTTGTTAGCCTTTTGGTGTAAAATGATTGATGTAAATGAGGTTGATATCCCTATAGGCCAACTTAATTCGTCAAATCATTAACTAACAAATTGAGTTTTGTACTGCAAAACTAGCATTGCAGCACCTCTTTTGTGCTTCTGTGAATCAATATAATCTTGCTTTTCAAGATAGTTAATGTTAAGAAAAGTTAAACAAGGTCTACACAATGTTAAGGTCAAGTTACAATGCCACGAGACCCTTTTTCACGTCTCTTCTATAAACAACTTCAGTCTCGTACACTGAAATGTAATGGCTATTGAAGTATTATGGCCGTACTTTGTTCCCTATTTATAGCTTCGCTTCTTAGTTGTTACACAACTTTTCTAGTGAGCAATAGAGTTTAGCATTAATAAAATTAAATGTCTATTGACTTTGAAGCATATAAGTAACCTAGTTAGAAGATTTCTTGTGTAACCTGATCTTTATTGGCCATATATGGGTTTGTGGGAACTTCTATGCCTTTATTTTTTTTTCTACTTTCATAGTTCTTTTTAATTCGAGTGTTACTATCCTCAAAAAATAATTCTTTTTTAATTTTGTATAGCTTTATAAGTTCTTTTTGGGAAAATTTTACTACTTATGGTCTAGGTAGGTCACAAGTCAATTAATCATTCAAGCTCGATACCAAACTAGTTAGGCTAGCCATAAAAAGTCTTTGATCTAGAAATTTCCCAAACTGTCCGGCCATTTCAATGGAAGAGAAAGTAAGTTTACGGTGTAACTTTGAAGAAGATGAAGTGTTGAGATGTCTCAAGCTACGTGCAATAGATAAAGCCCAAGGACCTGATGGTTTCACCATGGACTTTTACATTAAGTGTTGGGAGGTTGTTAAGCAGTAAATAATGAAGGCATTCCAATAATTCCACGAGCAAAAAGTGTTGGAAAGAAGATTCAATGCTACTTTTATTGCTCTCATTCCCAAGAAGAAGGTGCCATGGAGTTGAGGGATTATAGACCCACAAGTCTGATAGGCAGCATCTATAAAATCTTCTCCAAAGTCTTAACAATGACGGAAGGGGTGATGGAAAATCTAGTAGATTCTCAACAAATGACATTTATTAAAGGTAGACAGATCATGGATGCAGTCCTAGTGGCAAATGAAGCCGTAGGCTCAAGAACGAAGCATAAGAAGGAAGCAATATTGTACAAGCTTGACATTGAAAAAGCTTATGACCATGTTAATTGGGGATACTTGATGGATGTCCTTGAGAAGATGGGATTGGGGCTTAAGTGGACCAACTGGATAAAATTTTGTATATCTTCAGTAAAATTCTCTGTTTTGATTAATGGTGCTCCAACAGGATTCTTCGGAGTTCAAAGGGGCCTCAGGCAGGGGATCCTCCGTCCCTTTCCTGTTTTTGCTAGTTATGGAGGGAATCAACAACATGCTCAAAATAGCTAACACAAAATGGCTGGTTGAGAGGTTTTGATGTGGCTAGAGATGAAAGGGAAAGTTTAGAAGTGACTCATTTGCAATATGCAGATGACACACTCATCTTTTGTGGGGCAGAAGAAGAACAACTCAGATATCTTAGAGTAATATTGGTCATGTTTGAAGGAATCTCTGGGTTACATATTAATTTGAGCAAGAGTTTCCTTTATTCCATTAATGAAGTAAATAACATGGAGACACTGAACACTATCCTAGGTAGACAAGTTGGGGCTCTCCCAACTACATACTTTGGGATGCCTTTGGGTGCTAAATCAATGTCAAAAGAGATCTGGAACAATGTAATAGAGAAATGTGAGAAGAAACTGGCTAGATGGAAGGGGCAATACTTGTCTCTTGGAGGAAGAGTAACTTTTATCAACTCAGTTTTAGATGCTATGCCCACGTACATGATGTCTTTATTTCCCATTCCAGCAGGGTTACTGACAGATTGACAGGATCAGAAGGAAGTTCTTATGGAAGGGAAACAAGGATTGGAAAGGTTACAATCTGGTAAAGTGGACAGATCTGATAATACCAAAAAAGTATGGGGGTCTGGGATTAAAAAATTTGCAGAATCATAGTCAGGCTCTTAGAATGAAGTGGTTATGGAAGTATGCTAATGACAAACAACTGTTATGGGGAAAGGGACATTAAAAAGCCAAGTATGACAGAGAAAATAGATGGATGACAAAGGAAATAATCTCCCCATATGGAGTGAATCTGTGGAGATCTATAAGGGCCTTGTGGGATGACTTCAAGATCAATACCAAGGTTAAAGTCAAGAATGAGGAATAGACAGCTTTTGGGAAGATGACTGGCATGAAATAGGAGTTCTAAGGAATATCTATCCAGACATACACAATTTAATGCTAAACCAGCAAAGAACAATTGCTGAATTGTGGAAGCCTGATGGGTGGGAATCAATTTCAGAAGGCAATAAATGACTAGAAATCACAAGAGTTGCAGAATTCTTAAACACTATTGGACAATTTAAAGGAACACAAGTTGGTGGAAGGGCAGGGACAAAGGAATATTCAAGGTTGGCAATGCATAGAGATGGTTGAATAACCACAATCTACAGAATGTCAACTGGCCTTGGAAAACTATATGGAAGGTGAACATACCCTACAAGGTAGCATGTTTTACTTGGCTCCTATCTAAGGAAGTTGTCCTTATACAAGATAATCTGGTGAAAAAGGGATAACTTTATGTCCTAGATGTGTTTTTTGTGGAGAACAAGCAGAGATTGTTAGACATTTGTTCCTCCACTGCAAGTTCACAATCCAGCTTTGGAGGCTATTCTTGAACCTTAAAGGTTTCTCTTGGTCTATTCCGGGAAAGGTTATAGAGGCCTTGCAAAGCTGGGAAGAAGCTGGGTTCAAGCAAGAAGCAGAAGTAGGTGGAGAATCATACTAGCCGACATATGGTGGACAATTTGGAAGGAGAAGAATGCTAGGTGTTTTGAGAGCATAGAGAATAGTATAGAGCAAATCAAATTGAATTGTATCTTTATTCTATGTTTTTGGTGTAATGAGATCTGCTCTAATGATCCTGTATCTATTATTGATGTGTTAGACTCATTATAGACACAGGATCATAGGTTCTGGAATTGCTTGTATATGTACTGATCAGTTCGTATCAATATACACAAAGTTACCAATTTCGTTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAAGACTTTTTATATGCTGGCCATAAATCTATCACAAGCCTCCACTTTATCTGTGTTTGGGACTGGTTATGCATGAAGCTAATATATGTGTGAGTTCCATAGGTTACAAGTGACAGTGTCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTCTTTTTGTTTCCTTTGTCTTGCAAGTGTTGATGAAATAGAATATCTTTTTTCCTTTTTCTGATGAAGGTCAATACAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTGATAAATGAGTGTATACGTTGTTTGGTGTAATGAGATTTGGTCTAATGATCCTGTGTCTATTATTGATGTGTTAGACTCATTGTAGACATAGGATCAGAGGTTCTGGAATTACTTTTATATGTACTGATCAGTTTGTATCAATATACACAAAGTTACCAATTTAAAAAAAAAGTCTTTGATCAATTTCATTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAATACTTTTTATATGCTGACCATAAATCTGTCACAAACCTCCACTTTATCTGTGTTTGGGACTGGTTATGCGTGAGGCTAATATAGGTGTGAGTTCCACAGGTTACAAGTGACAGCGCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTTTTTTGTTTCCATTGCCTTGCAAGTGTTGGTGAAATAGAATATCTGTTTTCCTTTTTCTGATGAAGGTCAATAAAAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTAATAAATGAGTGTATATGTTGTTTGGCAATGGTAATCTGCATAAATAAAGCTGACCTTGTACTCTGTTTAATCTAGCATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAGGTTCTCATTTCTGCTGTTTTGAGTTCCATATTATCATCTCTTCTGGAATTCTTATTTTCCGTATTTGAAATATCACAATTTTAGATGGTTTGACATGCCCAGATGAACTTAGGAACTGCCTTTGGTGCGTTTTTA</genome_strand>
        <mrna_strand>TCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAG......................................................................................................ATGAACTTAGGAACTGCCTTTGGTGCGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="43981" stop="43146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43681" g_stop="43446" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43681" e_stop="43446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTACTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGT-GTTTGTACTGACCCCCTACTTTTATGTTT-TCTTCTTTGTTAATTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="44578" stop="43237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44278" g_stop="44006" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44005" i_stop="43781" i_length="225">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43780" g_stop="43537" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="515" r_length="244" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44278" e_stop="44006"/>
          <exon e_start="43780" e_stop="43537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCGCGTTCCAACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGAATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTACTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAG-A-ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCAC.................................................................................................................................................................................................................................GTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="61858" stop="63113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62158" g_stop="62813" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62158" e_stop="62813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTTACCTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGGCTACAGGACTTATAATGACAAGTGATCAGCATGAAGTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACTTATGACTTGGGCATCATTCTCTAGTTTATTTATGGAGAAGTATATACCCCGAACTTTGAGGGATAGGAGGAGAGAGGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTACTGCTTATGAGGCCAAATTTCGTGCACTATCTAGGTATGCTACCCAGCTTTGCTTCATTCCACAAGAGCGGATTTGCCGTTTTCTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTGGAT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="63999" stop="63069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63699" g_stop="63369" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63699" e_stop="63369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGTCCCAGGTTTGGCCAATGTTACAGTTTTAGCATTACAGTCTAAGATTGCAAAATTTTTAGAAAGCCAAGTCATACCCAGAATTAAATCGAAATCAACCATTTCTAGAATAATCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACAGGAGTACAGACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCAGTAGCAAATGAGGGAGATACATATGAAAATGTGGATCCAAGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403816" ref_strand="+" ref_description="SGN-E403816 [PPC-11-H4]">
      <seq>aagattaggcatgaagaaggacaacttcaagctccaatattagtatggtggaagaatcgtgaaaatcaatttccgacccttgctaggattgttcgagatgtgctagcgatgcaagcatcatcggtcgcttcggagcaagcctttagtacggcgagatttatgattggagatcattgatattcattagcaaaggatagtttggaaatatcggtgttgtttcgagattgagtcaatgccgaaagaagaaataccggactaccacaattaaatagccaaatagaagacgaaatagatgaaatatttggtgataatagtgatgatgacatggaagcaatagaagaagaacgacaaatacaagttccaaaaaatgtttcttttgaaatgatacaaaagttacgaaaagatttttaaaaaagtttcaattgttagtacaataattaatattcaatacctagattatgtactctttgtctctttctaatatttgtattgtacaatttatttatttgaataaatatacggctattcgccttgattttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="101267" stop="100124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100967" g_stop="100422" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E403816" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100967" e_stop="100422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTAGGCGTGAAGAAGGAGAACTTCAACCTCGAATATTAAATTGGTGGAAGAATCGTGAAAAACAATTTCCGACCCTTTCTAGGATTGTTCGAGATGTGCTAGCGATTCAAGCATCATCGGTCGCTTCGGAGCAAGCCTTTAGTGCAGCGAGATTTATGATTGGAGATCATCGATATTCATTAGCAAATGACAGTGTGGAAATATCGGTGTTGTTTCGAGATTGGGTCAATGCCGAACGAAGAAACACCGGACTACCACTATTAAGTAGCCATATAGACGACCAAATAGATGAAATATTTGGTGAGAATAGTGATGATGGCATGGAAGCAATTGAAGAAGAACAACAAATGCCAATTCAAAAAAATCTTTCTTTTCAAATGATACAAAATTTACAAAAAGAATTTTAAAAAAAATGGAATTGTTAGTATAATAATTACTATTCAATTCCTCCTGAATTATGTACTCTTATTCTCTTTCTAATATTTGTATTGTATAATTTATTTATTTGAATAAATATACAGCTATTCGCCTTGATTTTTTCT</genome_strand>
        <mrna_strand>AAGATTAGGCATGAAGAAGGACAACTTCAAGCTCCAATATTAGTATGGTGGAAGAATCGTGAAAATCAATTTCCGACCCTTGCTAGGATTGTTCGAGATGTGCTAGCGATGCAAGCATCATCGGTCGCTTCGGAGCAAGCCTTTAGTACGGCGAGATTTATGATTGGAGATCATTGATATTCATTAGCAAAGGATAGTTTGGAAATATCGGTGTTGTTTCGAGATTGAGTCAATGCCGAAAGAAGAAATACCGGACTACCACAATTAAATAGCCAAATAGAAGACGAAATAGATGAAATATTTGGTGATAATAGTGATGATGACATGGAAGCAATAGAAGAAGAACGACAAATACAAGTTCCAAAAAATGTTTCTTTTGAAATGATACAAAAGTTACGAAAAGATTTTTAAAAAAGTTTCAATTGTTAGTACAATAATTAATATTCAATACCT--AG-ATTATGTACTCTTTGTCTCTTTCTAATATTTGTATTGTACAATTTATTTATTTGAATAAATATACGGCTATTCGCCTTGATTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609839" ref_strand="+" ref_description="SGN-E609839 [46331]">
      <seq>gtgctatttcatctgaatttgcaaaatataaaggaaaagatcgatttgaaaattctcttgcttttatgattgaaaaattcaaaaaatattttttccctattcctcaaatctatttgactgctactactttcaacccaaattacaaattaaaaggtgttgaaagaatggttgaaaagatttatgcaaatttagaaattagagatgatgaaactcctagtgttgaagattgtaaaagtagcatatatataaaagctagagagttatataatacatataaatctatggaaaaaaatattccaatagttgaacctccatcttgtaaacctagaagcgatgatacggatgattggatggatgattatcttgagcttgaatcatctactaataatgattttgatttatatttcaatcaagcacgggaaaagattaggcacgaagaaggacaacttcaagctccaatattagtatggtggaagaatcgtgaaaatcaatttccgacccttgctaggattgttcgagatgtgctagcgattcaagcatcatcggttgcttcggagcaagcctttatgcggcgagatttatgattggagatcatcgatattcattagcacaaggatagtttggaaatatcagtgttgtttcgagattgggtcaatgccgaaagaagaaataccggactaccacaattaaatagccaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="101692" stop="100389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101392" g_stop="100689" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E609839" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101392" e_stop="100689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTATTTCAATTGAATTTGCTAAATATAAAGGAAAAGAACATTTTAAATATTCAATTGCTTTTATGATTGAAAAATTCAAAAAATATTTTTTCCCTATTCCTCAAATCTATTTGACTGCTACTACTTTCAACCCAAATTATAAATTAAGAGGTGTTGAAAGAATGGTTGAAAAGATTTATAAAAATTTAGAAATTAAAGATGATGAAACTCCTAGTGTTGAACAATGTAAAAGTAGCATTTATACAAAAGTTAAAGATTTATATAATGCATATAAAGTTATGGAAAAAAATATTCCAATAGTTGAACCTTCATCTTCTAAGCCTAAAAGTGATTATACGGATGATATGATGGATGAATATCTTGAGCTTGAAAGTGATGAAACTAATAATGATTTTGATTTATATTTCAACCAGGCACGGGAAAAGATTAGGCGTGAAGAAGGAGAACTTCAACCTCGAATATTAAATTGGTGGAAGAATCGTGAAAAACAATTTCCGACCCTTTCTAGGATTGTTCGAGATGTGCTAGCGATTCAAGCATCATCGGTCGCTTCGGAGCAAGCCTTTAGTGCAGCGAGATTTATGATTGGAGATCATCGATATTCATTAGCA-AATGACAGTGTGGAAATATCGGTGTTGTTTCGAGATTGGGTCAATGCCGAACGAAGAAACACCGGACTACCACTATTAAGTAGCCATATA</genome_strand>
        <mrna_strand>GTGCTATTTCATCTGAATTTGCAAAATATAAAGGAAAAGATCGATTTGAAAATTCTCTTGCTTTTATGATTGAAAAATTCAAAAAATATTTTTTCCCTATTCCTCAAATCTATTTGACTGCTACTACTTTCAACCCAAATTACAAATTAAAAGGTGTTGAAAGAATGGTTGAAAAGATTTATGCAAATTTAGAAATTAGAGATGATGAAACTCCTAGTGTTGAAGATTGTAAAAGTAGCATATATATAAAAGCTAGAGAGTTATATAATACATATAAATCTATGGAAAAAAATATTCCAATAGTTGAACCTCCATCTTGTAAACCTAGAAGCGATGATACGGATGATTGGATGGATGATTATCTTGAGCTTG-AA-TCAT-CTACTAATAATGATTTTGATTTATATTTCAATCAAGCACGGGAAAAGATTAGGCACGAAGAAGGACAACTTCAAGCTCCAATATTAGTATGGTGGAAGAATCGTGAAAATCAATTTCCGACCCTTGCTAGGATTGTTCGAGATGTGCTAGCGATTCAAGCATCATCGGTTGCTTCGGAGCAAGCCTTTA-TGCGGCGAGATTTATGATTGGAGATCATCGATATTCATTAGCACAAGGATAGTTTGGAAATATCAGTGTTGTTTCGAGATTGGGTCAATGCCGAAAGAAGAAATACCGGACTACCACAATTAAATAGCCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573431" ref_strand="+" ref_description="SGN-E573431 [32741]">
      <seq>tttttaaatatcaaaaagaatattgtcattttcttcgttgtttatttgcttattatgatggtagattatctattacttctgatatgggacgtagtcctaatggtaatgattattttacaattactgtccattggattgaccatgaatggaacatgcaaaaacgaatattaggatataaatatgttgaagaaactaaaaccggtgcttatatagcaacaaaaataggccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="102462" stop="101633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102162" g_stop="101932" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E573431" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102162" e_stop="101932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTACTTATTATGATGGTAGATTATCTATTACTTCTAATATGGGACGTAGTCCTAATGGTAACGATTATTTTACACCTACTGTCCATTGGATTGACCATGAATGGAACATACGAAAACGAATATTAGCGTATAAATATGTTGAAGAAACTAAAATCGGTTCTTATATAGCATCAAAAGTAGGCCCTA</genome_strand>
        <mrna_strand>TTTTTAAATATCAAAAAGAATATTGTCATTTTCTTCGTTGTTTATTTGCTTATTATGATGGTAGATTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAATGATTATTTTACAATTACTGTCCATTGGATTGACCATGAATGGAACATGCAAAAACGAATATTAGGATATAAATATGTTGAAGAAACTAAAACCGGTGCTTATATAGCAACAAAAATAGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441359" ref_strand="+" ref_description="SGN-E441359 [cSTA-30-K5]">
      <seq>gatctttagtatggaaatttttagtacaaaatgaggaaaaaactactgttacttgtacgaaatgtaaattgatcatgaaacatgtaactacgggtacacaagggggaacgggacgactaagaacacatttgagaaagtgtaataaagaatttgctcgcctagatgatatagaaagggctaatagaaatggaatacctcaacctgaaaattctatgggagctggaggttctaatatggttcaaagtgaattaaatatgactaacccggctagccgaagcacacaccgcacatatagtaaagaaaaagatcgtagagaattagctaaaatggttgctgtttgtggtttgcctttttcatttccttcacatcctggttttattcagtatattcgggaattgtataacccagattatgaaggtattccaagaagtacaattaaaagtgatctttttaaatatcaaaaagaatattgtcattttcttcgttgtttatttgcttattatgatggtagattatctattacttctgatatgggacgtagtcctaatggtaatgattattttacaattactgtccattggattgaccatgaatggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="102775" stop="101709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102609" g_stop="102009" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-E441359" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102609" e_stop="102009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTTAATATGGAAATTTTTGATACAAAATGAGGAAAAAACTACTGTTGCGTGCACTAAATGTAAATTGGTAATGAAACATGTAACTACGGGTACACAAGGGGGAACGGGACGACTAAGAACACATTTACTTAAGTGTAATAAAGAATTTGCTCGCCTAGATGATATAGAAAGAGCTAATAGAAATGGAACACCCATACCCGAAAGTTCTATGGGTGTTGGAGGTTCTAATATGGTTCAAGGTGTATTAAATATGTCTAACCCGGCTGGTCGAAGCACACACCGCACGTATAGTAAAGAAAAAGATCGTAGAGAATAAGCTAAAATGGTTGCTGTTTGTGGTTTACCTTTTTCATTTCCTTCTCATCCTGGTTTTGTTCATTATATTCGAGAATTATATAACCCAGATTATGAAAGTATTCCAAGAAATACAATTAAAAGTGATCTTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTACTTATTATGATGGTAGATTATCTATTACTTCTAATATGGGACGTAGTCCTAATGGTAACGATTATTTTACACCTACTGTCCATTGGATTGACCATGAATGGAACAT</genome_strand>
        <mrna_strand>GATCTTTAGTATGGAAATTTTTAGTACAAAATGAGGAAAAAACTACTGTTACTTGTACGAAATGTAAATTGATCATGAAACATGTAACTACGGGTACACAAGGGGGAACGGGACGACTAAGAACACATTTGAGAAAGTGTAATAAAGAATTTGCTCGCCTAGATGATATAGAAAGGGCTAATAGAAATGGAATACCTCAACCTGAAAATTCTATGGGAGCTGGAGGTTCTAATATGGTTCAAAGTGAATTAAATATGACTAACCCGGCTAGCCGAAGCACACACCGCACATATAGTAAAGAAAAAGATCGTAGAGAATTAGCTAAAATGGTTGCTGTTTGTGGTTTGCCTTTTTCATTTCCTTCACATCCTGGTTTTATTCAGTATATTCGGGAATTGTATAACCCAGATTATGAAGGTATTCCAAGAAGTACAATTAAAAGTGATCTTTTTAAATATCAAAAAGAATATTGTCATTTTCTTCGTTGTTTATTTGCTTATTATGATGGTAGATTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAATGATTATTTTACAATTACTGTCCATTGGATTGACCATGAATGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8559" PGL_stop="8209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8559" e_stop="8209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="8559" e_stop="8209" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8559" stop="8209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGATAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGTCTTAACAAGAGAAAAGGTCTGGAGCAAATCGAGAGGGATGGGATAGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGAGGACTAGAGATCCTATAACCAGGCTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  D  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  A  D  P  L  T  K  V  L  T  R  E  K  V  W  S  K  S  R  G  M  G  *  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  E  D  *  R  S  Y  N  Q  A  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  P  S  L  *  C  E  C  I  I  S  Y  S  L  *  R  L  S  *  *  N </first_frame>
            <second_frame>  T  I  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  Q  R  S  *  Q  E  K  R  S  G  A  N  R  E  G  W  D  R  S  L  Q  I  L  E  S  Y  M  R  K  P  N  L  R  T  R  D  P  I  T  R  L  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  P  Y  D  V  S  A  L  F  P  I  V  C  E  G  *  V  D  K   </second_frame>
            <third_frame>   R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  Q  I  E  R  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  *  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0130G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17339" PGL_stop="16860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17339" e_stop="16860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="17339" e_stop="16860" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17339" stop="17102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17338" stop="16860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGAAAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATAGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATACTGTTTTCTATTTTGAGTTAGCCGATGATATCTACTCAGTACCCGTGCTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGGGGAGTGCAGCAAACGTGTCGTCGTCTTCAACTCAACAGTAATTCTAGCCATTCTTCGTCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  K  R  S  V  T  Y  R  Y  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  S  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  S  R  *  Y  L  L  S  T  R  A  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  G  S  A  A  N  V  S  S  S  S  T  Q  Q  *  F  *  P  F  F  V  T  P  D  L  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  E  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  I  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  L  C  T  D  P  Y  F  Y  V  F  F  L  F  I  W  G  V  Q  Q  T  C  R  R  L  Q  L  N  S  N  S  S  H  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  K  A  E  C  H  V  P  I  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  *  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  F  S  I  L  S  *  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  G  E  C  S  K  R  V  V  V  F  N  S  T  V  I  L  A  I  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0130G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17830" PGL_stop="17430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17830" e_stop="17430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="17830" e_stop="17430" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17830" stop="17430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTTCAGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAAATGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGACGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACTGACAAA</gDNA_template>
            <first_frame> E  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  D  S  I  V  N  P  A  M  C  L  N  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  D  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  M  *  I  *  G  I  G  C  H  E  L  T   </first_frame>
            <second_frame>  N  L  Q  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  I  V  L  *  T  L  L  C  A  *  M  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  K  T  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  C  R  F  R  G  S  G  V  T  N  *  Q  </second_frame>
            <third_frame>   I  F  S  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  K  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  A  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0130G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26371" PGL_stop="26889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26371" e_stop="26889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="26371" e_stop="26889" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26371" stop="26889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTTAACTAGATGAGATACCTTGTTCACATGCAATTTTTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTACCAATGCCAGATAAGGAAGACTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCTTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTAAACACTTTGTGTTTACATAAATAAACTTACAAACATGTGGTAATTAAATTTGAA</gDNA_template>
            <first_frame> L  E  R  K  V  C  S  C  G  R  F  *  L  D  E  I  P  C  S  H  A  I  F  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  E  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  P  R  K  R  R  R  K  N  A  N  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  S  L  N  V  S  M  I  S  R  I  I  Y  N  V  N  I  L  M  N  F  S  F  H  Y  N  C  K  L  N  T  L  C  L  H  K  *  T  Y  K  H  V  V  I  K  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  L  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  F  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  Y  Q  C  Q  I  R  K  T  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  Q  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  T  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  L  V  L  M  F  L  *  Y  Q  E  *  F  I  T  *  T  F  *  *  I  S  V  F  I  T  T  A  N  *  T  L  C  V  Y  I  N  K  L  T  N  M  W  *  L  N  L   </second_frame>
            <third_frame>   *  A  E  S  M  F  L  W  *  I  L  T  R  *  D  T  L  F  T  C  N  F  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  T  N  A  R  *  G  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  K  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  *  S  *  C  F  Y  D  I  K  N  N  L  *  R  K  H  F  N  E  F  Q  F  S  L  Q  L  Q  I  K  H  F  V  F  T  *  I  N  L  Q  T  C  G  N  *  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26407" stop="26748"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDEIPCSHAIFVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKEDWSDPKHVVAETVYPPRYRRSSGRPRKRRRKNANEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30259" PGL_stop="29347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30259" e_stop="29976"/>
            <exon e_start="29772" e_stop="29650"/>
            <exon e_start="29565" e_stop="29347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.905"/>
          <exon-intron don_prob="0.990" acc_prob="0.985" e_score="0.927"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="30259" e_stop="29976" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29975" i_stop="29773" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="29772" e_stop="29650" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.985">
            <gDNA_intron_boundary i_start="29649" i_stop="29566" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="29565" e_stop="29347" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30259" stop="29976"/>
              <exon start="29772" stop="29650"/>
              <exon start="29565" stop="29347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATAGGCAAGGAAAACATCAATTTTCAGGCTAATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCAATTGATCTCGATGATATGGGCGGTGTAAATGAGGATGGTGGTGGTTTTTCTAGTAAAAATGGTGAACATCATATCGTTGACGATGCAGAGGATGTCGATGTGGATGGTGTTGGTGTTTCCGTAAATGAGGGTGAACAACTAGTCAGTGATAATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGACGTTGATGACAATGTTCAGCACAACATCCCTCATGTTTTGCCTGAAAAAACAACAACGGATGCATAG : GAATGTTCCACTTCAACAACAATATCACCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGCTAAAGATCCTACTAATGCTAGACCATTATATTCTTACGATCCGCAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGATATTCCAATAACGGAGATTGTTGTTAATACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  *  A  R  K  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  Q  L  I  S  M  I  W  A  V  *  M  R  M  V  V  V  F  L  V  K  M  V  N  I  I  S  L  T  M  Q  R  M  S  M  W  M  V  L  V  F  P  *  M  R  V  N  N  *  S  V  I  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  K  T  L  M  T  M  F  S  T  T  S  L  M  F  C  L  K  K  Q  Q  R  M  H  R :   N  V  P  L  Q  Q  Q  Y  H  H  Q  L  K  Q  Q  *  M  R  L  S  K  I  W  L  K  I  L  L  M  L  D  H  Y  I  L  T  I  R  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  I  F  Q  *  R  R  L  L  L  I  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  T  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  R  Q  G  K  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  N  *  S  R  *  Y  G  R  C  K  *  G  W  W  W  F  F  *  *  K  W  *  T  S  Y  R  *  R  C  R  G  C  R  C  G  W  C  W  C  F  R  K  *  G  *  T  T  S  Q  *  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  R  R  *  *  Q  C  S  A  Q  H  P  S  C  F  A  *  K  N  N  N  G  C  I   : G  M  F  H  F  N  N  N  I  T  I  N  S  S  S  N  R  C  A  Y  Q  R  F  G  *  R  S  Y  *  C  *  T  I  I  F  L  R  S  A  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  Y  S  N  N  G  D  C  C  *  Y  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  G  K  E  N  I  N  F  Q  A  N  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  I  D  L  D  D  M  G  G  V  N  E  D  G  G  G  F  S  S  K  N  G  E  H  H  I  V  D  D  A  E  D  V  D  V  D  G  V  G  V  S  V  N  E  G  E  Q  L  V  S  D  N  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  D  V  D  D  N  V  Q  H  N  I  P  H  V  L  P  E  K  T  T  T  D  A  *  :  E  C  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  D  A  L  I  K  D  L  A  K  D  P  T  N  A  R  P  L  Y  S  Y  D  P  Q  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  D  I  P  I  T  E  I  V  V  N  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30257" stop="29976"/>
                    <exon start="29772" stop="29650"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSIGKENINFQANTSTFQSDKQTSQQIPIDLDDMGGVNEDGGGFSSKNGEHHIVDDAEDVDVDGVGVSVNEGEQLVSDNPKDGDAHQSHQDLNEHIMDQDVDDNVQHNIPHVLPEKTTTDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29565" stop="29347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECSTSTTISPSTQAAIDALIKDLAKDPTNARPLYSYDPQNITSSQYLLTDSQLPTDIPITEIVVNTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31514" PGL_stop="30638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31514" e_stop="30964"/>
            <exon e_start="30857" e_stop="30638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="31514" e_stop="30964" e_length="551"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30963" i_stop="30858" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="30857" e_stop="30638" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31514" stop="30964"/>
              <exon start="30857" stop="30638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTGGTATAGATGAATTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTCAAAAGTATTTTCCTGGTGCAGTCACTAGTGTTACAAAGCATCAACTAGTTCAACAGTTTAAGATGGGTAATTGGGAGAACAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTACTCTTGATAATACAACTATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGATGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCTGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATGTGCAATTGGAGAGTTGTGTTTGAAAAGGCAAAGTTTGAAATGCTTGTGTCTACCATTTTCCAAGAG : TCAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGTTTTTGACCTTGCTCAAGTTGAACATGCTCATTCTTCATCACTACCATTAGTACAACCAAATGAGGAAGTTGATTTAGATAATTTCTCCACAAAACCGTCCGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAAAAAGAAAAAAA</gDNA_template>
            <first_frame> N  L  V  *  M  N  L  H  Y  *  Q  D  L  R  S  E  E  I  P  M  I  S  N  T  Q  N  K  L  I  V  C  F  F  K  S  I  F  L  V  Q  S  L  V  L  Q  S  I  N  *  F  N  S  L  R  W  V  I  G  R  T  I  R  M  H  S  K  C  L  Y  C  S  L  F  I  H  L  Y  *  L  L  L  I  I  Q  L  Y  L  L  S  T  F  *  W  L  K  M  V  D  I  N  I  F  L  G  V  S  Y  H  F  P  N  *  L  V  H  L  D  R  I  L  M  L  V  K  S  C  T  D  Y  M  G  C  H  M  H  *  M  F  G  Y  T  N  V  H  P  I  *  I  L  K  *  L  *  E  N  A  M  S  S  Q  E  C  A  I  G  E  L  C  L  K  R  Q  S  L  K  C  L  C  L  P  F  S  K  S :   Q  N  A  C  S  N  I  V  P  T  A  E  E  I  E  V  F  D  L  A  Q  V  E  H  A  H  S  S  S  L  P  L  V  Q  P  N  E  E  V  D  L  D  N  F  S  T  K  P  S  E  Q  L  L  R  T  Y  S  R  V  S  D  T  S  P  P  P  P  P  K  K  R  K  K </first_frame>
            <second_frame>  I  W  Y  R  *  I  C  I  I  N  R  T  *  G  Q  R  K  Y  Q  *  F  Q  I  P  R  T  N  *  L  Y  A  F  S  K  V  F  S  W  C  S  H  *  C  Y  K  A  S  T  S  S  T  V  *  D  G  *  L  G  E  Q  S  G  C  T  P  N  V  Y  T  V  L  Y  S  Y  I  C  I  S  Y  S  *  *  Y  N  Y  I  Y  C  R  L  S  N  G  *  R  W  *  I  S  T  F  S  L  G  S  A  I  I  F  Q  T  N  W  F  T  *  T  G  F  *  C  *  *  K  V  V  P  I  I  W  D  A  I  C  T  K  C  L  D  I  R  M  C  I  Q  F  K  F  *  N  S  C  E  R  T  Q  C  H  P  K  N  V  Q  L  E  S  C  V  *  K  G  K  V  *  N  A  C  V  Y  H  F  P  R   : V  R  M  H  V  Q  T  L  S  Q  Q  Q  R  K  L  K  F  L  T  L  L  K  L  N  M  L  I  L  H  H  Y  H  *  Y  N  Q  M  R  K  L  I  *  I  I  S  P  Q  N  R  P  N  S  Y  *  G  H  I  L  E  C  L  I  H  L  L  H  H  R  Q  K  K  E  K   </second_frame>
            <third_frame>   F  G  I  D  E  F  A  L  L  T  G  L  K  V  R  G  N  T  N  D  F  K  Y  P  E  Q  T  N  C  M  L  F  Q  K  Y  F  P  G  A  V  T  S  V  T  K  H  Q  L  V  Q  Q  F  K  M  G  N  W  E  N  N  Q  D  A  L  Q  M  S  I  L  F  F  I  H  T  F  V  L  A  T  L  D  N  T  T  I  S  I  V  D  F  L  M  V  E  D  G  R  Y  Q  H  F  P  W  G  Q  L  S  F  S  K  L  I  G  S  L  R  Q  D  F  D  V  S  K  K  L  Y  R  L  Y  G  M  P  Y  A  L  N  V  W  I  Y  E  C  A  S  N  L  N  S  E  I  A  V  R  E  R  N  V  I  P  R  M  C  N  W  R  V  V  F  E  K  A  K  F  E  M  L  V  S  T  I  F  Q  E  :  S  E  C  M  F  K  H  C  P  N  S  R  G  N  *  S  F  *  P  C  S  S  *  T  C  S  F  F  I  T  T  I  S  T  T  K  *  G  S  *  F  R  *  F  L  H  K  T  V  R  T  V  I  E  D  I  F  *  S  V  *  Y  I  S  S  T  T  A  K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31512" stop="30964"/>
                    <exon start="30857" stop="30813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGIDEFALLTGLKVRGNTNDFKYPEQTNCMLFQKYFPGAVTSVTKHQLVQQFKMGNWENNQDALQMSILFFIHTFVLATLDNTTISIVDFLMVEDGRYQHFPWGQLSFSKLIGSLRQDFDVSKKLYRLYGMPYALNVWIYECASNLNSEIAVRERNVIPRMCNWRVVFEKAKFEMLVSTIFQESECMFKHCPNSRGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="33338" PGL_stop="46595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33338" e_stop="33757"/>
            <exon e_start="39464" e_stop="39561"/>
            <exon e_start="39664" e_stop="39714"/>
            <exon e_start="39877" e_stop="39990"/>
            <exon e_start="46159" e_stop="46215"/>
            <exon e_start="46297" e_stop="46382"/>
            <exon e_start="46479" e_stop="46595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.488" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.575" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="33338" e_stop="33757" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.488">
            <gDNA_intron_boundary i_start="33758" i_stop="39463" i_length="5706"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39464" e_stop="39561" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="39562" i_stop="39663" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39664" e_stop="39714" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.899">
            <gDNA_intron_boundary i_start="39715" i_stop="39876" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39877" e_stop="39990" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39991" i_stop="46158" i_length="6168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46159" e_stop="46215" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46216" i_stop="46296" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46297" e_stop="46382" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.575">
            <gDNA_intron_boundary i_start="46383" i_stop="46478" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46479" e_stop="46595" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33338" stop="33757"/>
              <exon start="39464" stop="39561"/>
              <exon start="39664" stop="39699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33403" stop="33757"/>
              <exon start="39464" stop="39561"/>
              <exon start="39664" stop="39714"/>
              <exon start="39877" stop="39990"/>
              <exon start="46159" stop="46215"/>
              <exon start="46297" stop="46382"/>
              <exon start="46479" stop="46595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33481" stop="33757"/>
              <exon start="39464" stop="39561"/>
              <exon start="39664" stop="39696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCGTAAGTAATTATACAAACAATGCCCGGAACTCTCAAACTCAACAACGCTCTTGCCTCTATTTATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCA : CATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAG : ATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGATCCAGTGGCTGACAAG : TTAATGGTTGCTGCTACCTTGGTCTTGTTGTGCACCAAACCTTTGGAGTCCGGTGTGTTCGGACAGTTGCCATGGCTATTAACTGTCCCTTCGATTGCGATAATAGGCAGGGAG : ATAACCATGTCTGCAGTTCGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG : GCTGTAGCTGTGAATAACCTCGGGAAATGGAAAACTGCCACCCAGATGATTGCATTGACCATCCTCCTGCTAACCAGAGATAGCAG : TTTATCTGGAGCTGCCTCTCTTGTGGGTTCCGGTGTGATGTTGCTATATATATCAGCGTGGCTTGCTGTGTGGTCTCTGTTCGTTTATATGAGAAAGATATGGAAAGTGTTATTGAT</gDNA_template>
            <first_frame> L  R  K  *  L  Y  K  Q  C  P  E  L  S  N  S  T  T  L  L  P  L  F  I  T  T  I  L  T  S  P  I  I  G  C  A  L  L  P  P  L  P  A  P  A  F  L  T  P  P  S  P  S  L  P  L  T  S  A  T  L  C  I  F  R  P  T  V  I  P  L  P  V  G  N  S  *  G  V  *  V  T  D  M  L  *  E  V  F  L  L  L  R  W  D  P  P  L  I  T  R  R  R  I  S  A  V  K  N  H  L  S  L  Y  P  P  S  L  K  S  C  L  H  C  P  R  F  *  Q  L  A  V  W  L  L  F  R  F  W  *  P  :  H  S  M  L  I  A  G  G  G  Q  M  L  Q  R  L  Y  L  L  Q  Q  L  *  L  T  G  L  M  D  T  L  L  A  R :   *  T  *  E  L  P  L  V  R  F  *  I  Q  W  L  T  S :   *  W  L  L  L  P  W  S  C  C  A  P  N  L  W  S  P  V  C  S  D  S  C  H  G  Y  *  L  S  L  R  L  R  *  *  A  G  R :   *  P  C  L  Q  F  E  N  G  R  L  L  R  V  V  N  F  Q  R :   L  *  L  *  I  T  S  G  N  G  K  L  P  P  R  *  L  H  *  P  S  S  C  *  P  E  I  A   : V  Y  L  E  L  P  L  L  W  V  P  V  *  C  C  Y  I  Y  Q  R  G  L  L  C  G  L  C  S  F  I  *  E  R  Y  G  K  C  Y  *  </first_frame>
            <second_frame>  C  V  S  N  Y  T  N  N  A  R  N  S  Q  T  Q  Q  R  S  C  L  Y  L  L  L  Q  F  S  Q  A  L  *  L  V  A  L  F  Y  L  P  Y  R  H  R  H  F  *  L  L  H  H  R  R  C  R  S  Q  A  L  L  F  V  Y  S  A  R  R  *  F  P  F  P  S  E  I  P  R  A  F  R  S  R  I  C  S  K  K  Y  F  Y  Y  S  D  G  T  H  P  *  S  Q  G  G  G  S  P  P  *  K  I  I  S  P  Y  T  L  Q  V  *  K  V  A  Y  I  A  H  D  F  N  N  W  P  C  G  C  C  S  A  F  G  N  H :   I  L  C  *  *  L  V  G  A  K  C  Y  N  G  Y  I  Y  C  S  S  C  N  *  L  A  *  W  I  P  C  S  Q   : D  E  L  R  N  C  L  W  C  V  F  R  S  S  G  *  Q   : V  N  G  C  C  Y  L  G  L  V  V  H  Q  T  F  G  V  R  C  V  R  T  V  A  M  A  I  N  C  P  F  D  C  D  N  R  Q  G   : D  N  H  V  C  S  S  R  M  G  G  F  S  G  W  *  T  F  R   : G  C  S  C  E  *  P  R  E  M  E  N  C  H  P  D  D  C  I  D  H  P  P  A  N  Q  R  *  Q  :  F  I  W  S  C  L  S  C  G  F  R  C  D  V  A  I  Y  I  S  V  A  C  C  V  V  S  V  R  L  Y  E  K  D  M  E  S  V  I  D </second_frame>
            <third_frame>   A  *  V  I  I  Q  T  M  P  G  T  L  K  L  N  N  A  L  A  S  I  Y  Y  Y  N  S  H  K  P  Y  N  W  L  R  S  F  T  S  L  T  G  T  G  I  S  N  S  S  I  T  V  A  A  A  H  K  R  Y  S  L  Y  I  P  P  D  G  D  S  P  S  R  R  K  F  L  G  R  L  G  H  G  Y  A  L  R  S  I  S  T  T  Q  M  G  P  T  P  D  H  K  E  E  D  L  R  R  E  K  S  S  L  P  I  P  S  K  S  E  K  L  L  T  L  P  T  I  L  T  I  G  R  V  A  A  V  P  L  L  V  T   : T  F  Y  V  D  S  W  W  G  P  N  A  T  T  A  I  F  I  A  A  A  V  T  D  W  L  D  G  Y  L  A  R  K  :  M  N  L  G  T  A  F  G  A  F  L  D  P  V  A  D  K  :  L  M  V  A  A  T  L  V  L  L  C  T  K  P  L  E  S  G  V  F  G  Q  L  P  W  L  L  T  V  P  S  I  A  I  I  G  R  E  :  I  T  M  S  A  V  R  E  W  A  A  S  Q  G  G  K  L  S  E  :  A  V  A  V  N  N  L  G  K  W  K  T  A  T  Q  M  I  A  L  T  I  L  L  L  T  R  D  S  S :   L  S  G  A  A  S  L  V  G  S  G  V  M  L  L  Y  I  S  A  W  L  A  V  W  S  L  F  V  Y  M  R  K  I  W  K  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33346" stop="33757"/>
                    <exon start="39464" stop="39561"/>
                    <exon start="39664" stop="39714"/>
                    <exon start="39877" stop="39990"/>
                    <exon start="46159" stop="46215"/>
                    <exon start="46297" stop="46382"/>
                    <exon start="46479" stop="46593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIIQTMPGTLKLNNALASIYYYNSHKPYNWLRSFTSLTGTGISNSSITVAAAHKRYSLYIPPDGDSPSRRKFLGRLGHGYALRSISTTQMGPTPDHKEEDLRREKSSLPIPSKSEKLLTLPTILTIGRVAAVPLLVTTFYVDSWWGPNATTAIFIAAAVTDWLDGYLARKMNLGTAFGAFLDPVADKLMVAATLVLLCTKPLESGVFGQLPWLLTVPSIAIIGREITMSAVREWAASQGGKLSEAVAVNNLGKWKTATQMIALTILLLTRDSSLSGAASLVGSGVMLLYISAWLAVWSLFVYMRKIWKVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44278" PGL_stop="43446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44278" e_stop="44006"/>
            <exon e_start="43780" e_stop="43446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.974"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="44278" e_stop="44006" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44005" i_stop="43781" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="43780" e_stop="43446" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44278" stop="44006"/>
              <exon start="43780" stop="43537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43681" stop="43446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAC : GTTCCGACACCAGAATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTACTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTAATTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  :  V  P  T  P  E  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  Y  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  C  T  D  P  L  L  L  C  F  L  L  C  *  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  N  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T :   F  R  H  Q  N  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  Y  L  V  L  *  P  R  V  M  V  T  I  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  V  L  T  P  Y  F  Y  V  F  F  F  V  N  C  </second_frame>
            <third_frame>   *  S  T  L  L  I  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S   : R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  T  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  Y  *  P  P  T  F  M  F  S  S  L  L  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0130G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62158" PGL_stop="62813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62158" e_stop="62813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="62158" e_stop="62813" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62158" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTTACCTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGGCTACAGGACTTATAATGACAAGTGATCAGCATGAAGTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACTTATGACTTGGGCATCATTCTCTAGTTTATTTATGGAGAAGTATATACCCCGAACTTTGAGGGATAGGAGGAGAGAGGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTACTGCTTATGAGGCCAAATTTCGTGCACTATCTAGGTATGCTACCCAGCTTTGCTTCATTCCACAAGAGCGGATTTGCCGTTTTCTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTGGAT</gDNA_template>
            <first_frame> R  *  L  T  R  F  L  P  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  W  L  Q  D  L  *  *  Q  V  I  S  M  K  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  P  I  S  F  R  G  M  P  K  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  V  Y  L  W  R  S  I  Y  P  E  L  *  G  I  G  G  E  R  S  S  *  A  *  S  K  E  G  C  L  L  L  L  M  R  P  N  F  V  H  Y  L  G  M  L  P  S  F  A  S  F  H  K  S  G  F  A  V  F  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  W   </first_frame>
            <second_frame>  D  D  *  P  G  S  Y  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  G  Y  R  T  Y  N  D  K  *  S  A  *  S  F  H  *  I  L  E  V  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  V  C  D  L  S  V  S  G  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  F  I  Y  G  E  V  Y  T  P  N  F  E  G  *  E  E  R  G  V  P  E  P  R  A  R  K  D  V  C  Y  C  L  *  G  Q  I  S  C  T  I  *  V  C  Y  P  A  L  L  H  S  T  R  A  D  L  P  F  S  E  R  I  E  V  R  F  A  D  P  S  L  T  G  G  </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  R  M  D  A  S  L  E  V  G  T  F  P  R  L  A  T  G  L  I  M  T  S  D  Q  H  E  V  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  L  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  E  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  I  P  Q  E  R  I  C  R  F  L  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62160" stop="62813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLTYLSGLSDQGQTPPVFSAPAPQVPGVQHAAAVAPRMDASLEVGTFPRLATGLIMTSDQHEVFTKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMDIVERFGVEFVTYQFQGNAKMWWRSYVECQPAQAPLMTWASFSSLFMEKYIPRTLRDRRREEFLSLEQGRMSVTAYEAKFRALSRYATQLCFIPQERICRFLKGLRSDLQIPALQVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="63699" PGL_stop="63369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63699" e_stop="63369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="63699" e_stop="63369" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63699" stop="63369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCAGTCCCAGGTTTGGCCAATGTTACAGTTTTAGCATTACAGTCTAAGATTGCAAAATTTTTAGAAAGCCAAGTCATACCCAGAATTAAATCGAAATCAACCATTTCTAGAATAATCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACAGGAGTACAGACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCAGTAGCAAATGAGGGAGATACATATGAAAATGTGGATCCAAGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  Q  S  Q  V  W  P  M  L  Q  F  *  H  Y  S  L  R  L  Q  N  F  *  K  A  K  S  Y  P  E  L  N  R  N  Q  P  F  L  E  *  S  S  L  H  E  Y  C  S  P  Q  K  S  Q  D  K  T  Y  T  P  S  Q  L  S  Q  T  H  P  Q  E  Y  R  H  E  *  A  C  Q  A  I  H  N  V  N  Q  D  Q  *  Q  M  R  E  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  S  P  R  F  G  Q  C  Y  S  F  S  I  T  V  *  D  C  K  I  F  R  K  P  S  H  T  Q  N  *  I  E  I  N  H  F  *  N  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  L  N  Y  H  R  L  T  H  R  S  T  D  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  K  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  L  E  S  Q  V  I  P  R  I  K  S  K  S  T  I  S  R  I  I  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  Q  T  R  I  G  M  S  S  N  S  Q  C  K  S  R  P  V  A  N  E  G  D  T  Y  E  N  V  D  P  R  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63568" stop="63371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRQDLYTFSTITDSPTGVQTRIGMSSNSQCKSRPVANEGDTYENVDPRSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="101392" PGL_stop="100422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101392" e_stop="100422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="101392" e_stop="100422" e_length="971"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101392" stop="100689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100967" stop="100422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCTATTTCAATTGAATTTGCTAAATATAAAGGAAAAGAACATTTTAAATATTCAATTGCTTTTATGATTGAAAAATTCAAAAAATATTTTTTCCCTATTCCTCAAATCTATTTGACTGCTACTACTTTCAACCCAAATTATAAATTAAGAGGTGTTGAAAGAATGGTTGAAAAGATTTATAAAAATTTAGAAATTAAAGATGATGAAACTCCTAGTGTTGAACAATGTAAAAGTAGCATTTATACAAAAGTTAAAGATTTATATAATGCATATAAAGTTATGGAAAAAAATATTCCAATAGTTGAACCTTCATCTTCTAAGCCTAAAAGTGATTATACGGATGATATGATGGATGAATATCTTGAGCTTGAAAGTGATGAAACTAATAATGATTTTGATTTATATTTCAACCAGGCACGGGAAAAGATTAGGCGTGAAGAAGGAGAACTTCAACCTCGAATATTAAATTGGTGGAAGAATCGTGAAAAACAATTTCCGACCCTTTCTAGGATTGTTCGAGATGTGCTAGCGATTCAAGCATCATCGGTCGCTTCGGAGCAAGCCTTTAGTGCAGCGAGATTTATGATTGGAGATCATCGATATTCATTAGCAAATGACAGTGTGGAAATATCGGTGTTGTTTCGAGATTGGGTCAATGCCGAACGAAGAAACACCGGACTACCACTATTAAGTAGCCATATAGACGACCAAATAGATGAAATATTTGGTGAGAATAGTGATGATGGCATGGAAGCAATTGAAGAAGAACAACAAATGCCAATTCAAAAAAATCTTTCTTTTCAAATGATACAAAATTTACAAAAAGAATTTTAAAAAAAATGGAATTGTTAGTATAATAATTACTATTCAATTCCTCCTGAATTATGTACTCTTATTCTCTTTCTAATATTTGTATTGTATAATTTATTTATTTGAATAAATATACAGCTATTCGCCTTGATTTTTTCT</gDNA_template>
            <first_frame> V  L  F  Q  L  N  L  L  N  I  K  E  K  N  I  L  N  I  Q  L  L  L  *  L  K  N  S  K  N  I  F  S  L  F  L  K  S  I  *  L  L  L  L  S  T  Q  I  I  N  *  E  V  L  K  E  W  L  K  R  F  I  K  I  *  K  L  K  M  M  K  L  L  V  L  N  N  V  K  V  A  F  I  Q  K  L  K  I  Y  I  M  H  I  K  L  W  K  K  I  F  Q  *  L  N  L  H  L  L  S  L  K  V  I  I  R  M  I  *  W  M  N  I  L  S  L  K  V  M  K  L  I  M  I  L  I  Y  I  S  T  R  H  G  K  R  L  G  V  K  K  E  N  F  N  L  E  Y  *  I  G  G  R  I  V  K  N  N  F  R  P  F  L  G  L  F  E  M  C  *  R  F  K  H  H  R  S  L  R  S  K  P  L  V  Q  R  D  L  *  L  E  I  I  D  I  H  *  Q  M  T  V  W  K  Y  R  C  C  F  E  I  G  S  M  P  N  E  E  T  P  D  Y  H  Y  *  V  A  I  *  T  T  K  *  M  K  Y  L  V  R  I  V  M  M  A  W  K  Q  L  K  K  N  N  K  C  Q  F  K  K  I  F  L  F  K  *  Y  K  I  Y  K  K  N  F  K  K  N  G  I  V  S  I  I  I  T  I  Q  F  L  L  N  Y  V  L  L  F  S  F  *  Y  L  Y  C  I  I  Y  L  F  E  *  I  Y  S  Y  S  P  *  F  F   </first_frame>
            <second_frame>  C  Y  F  N  *  I  C  *  I  *  R  K  R  T  F  *  I  F  N  C  F  Y  D  *  K  I  Q  K  I  F  F  P  Y  S  S  N  L  F  D  C  Y  Y  F  Q  P  K  L  *  I  K  R  C  *  K  N  G  *  K  D  L  *  K  F  R  N  *  R  *  *  N  S  *  C  *  T  M  *  K  *  H  L  Y  K  S  *  R  F  I  *  C  I  *  S  Y  G  K  K  Y  S  N  S  *  T  F  I  F  *  A  *  K  *  L  Y  G  *  Y  D  G  *  I  S  *  A  *  K  *  *  N  *  *  *  F  *  F  I  F  Q  P  G  T  G  K  D  *  A  *  R  R  R  T  S  T  S  N  I  K  L  V  E  E  S  *  K  T  I  S  D  P  F  *  D  C  S  R  C  A  S  D  S  S  I  I  G  R  F  G  A  S  L  *  C  S  E  I  Y  D  W  R  S  S  I  F  I  S  K  *  Q  C  G  N  I  G  V  V  S  R  L  G  Q  C  R  T  K  K  H  R  T  T  T  I  K  *  P  Y  R  R  P  N  R  *  N  I  W  *  E  *  *  *  W  H  G  S  N  *  R  R  T  T  N  A  N  S  K  K  S  F  F  S  N  D  T  K  F  T  K  R  I  L  K  K  M  E  L  L  V  *  *  L  L  F  N  S  S  *  I  M  Y  S  Y  S  L  S  N  I  C  I  V  *  F  I  Y  L  N  K  Y  T  A  I  R  L  D  F  F  </second_frame>
            <third_frame>   A  I  S  I  E  F  A  K  Y  K  G  K  E  H  F  K  Y  S  I  A  F  M  I  E  K  F  K  K  Y  F  F  P  I  P  Q  I  Y  L  T  A  T  T  F  N  P  N  Y  K  L  R  G  V  E  R  M  V  E  K  I  Y  K  N  L  E  I  K  D  D  E  T  P  S  V  E  Q  C  K  S  S  I  Y  T  K  V  K  D  L  Y  N  A  Y  K  V  M  E  K  N  I  P  I  V  E  P  S  S  S  K  P  K  S  D  Y  T  D  D  M  M  D  E  Y  L  E  L  E  S  D  E  T  N  N  D  F  D  L  Y  F  N  Q  A  R  E  K  I  R  R  E  E  G  E  L  Q  P  R  I  L  N  W  W  K  N  R  E  K  Q  F  P  T  L  S  R  I  V  R  D  V  L  A  I  Q  A  S  S  V  A  S  E  Q  A  F  S  A  A  R  F  M  I  G  D  H  R  Y  S  L  A  N  D  S  V  E  I  S  V  L  F  R  D  W  V  N  A  E  R  R  N  T  G  L  P  L  L  S  S  H  I  D  D  Q  I  D  E  I  F  G  E  N  S  D  D  G  M  E  A  I  E  E  E  Q  Q  M  P  I  Q  K  N  L  S  F  Q  M  I  Q  N  L  Q  K  E  F  *  K  K  W  N  C  *  Y  N  N  Y  Y  S  I  P  P  E  L  C  T  L  I  L  F  L  I  F  V  L  Y  N  L  F  I  *  I  N  I  Q  L  F  A  L  I  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101390" stop="100557"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISIEFAKYKGKEHFKYSIAFMIEKFKKYFFPIPQIYLTATTFNPNYKLRGVERMVEKIYKNLEIKDDETPSVEQCKSSIYTKVKDLYNAYKVMEKNIPIVEPSSSKPKSDYTDDMMDEYLELESDETNNDFDLYFNQAREKIRREEGELQPRILNWWKNREKQFPTLSRIVRDVLAIQASSVASEQAFSAARFMIGDHRYSLANDSVEISVLFRDWVNAERRNTGLPLLSSHIDDQIDEIFGENSDDGMEAIEEEQQMPIQKNLSFQMIQNLQKEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="102609" PGL_stop="101932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102609" e_stop="101932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="102609" e_stop="101932" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102609" stop="102009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102162" stop="101932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTTAATATGGAAATTTTTGATACAAAATGAGGAAAAAACTACTGTTGCGTGCACTAAATGTAAATTGGTAATGAAACATGTAACTACGGGTACACAAGGGGGAACGGGACGACTAAGAACACATTTACTTAAGTGTAATAAAGAATTTGCTCGCCTAGATGATATAGAAAGAGCTAATAGAAATGGAACACCCATACCCGAAAGTTCTATGGGTGTTGGAGGTTCTAATATGGTTCAAGGTGTATTAAATATGTCTAACCCGGCTGGTCGAAGCACACACCGCACGTATAGTAAAGAAAAAGATCGTAGAGAATAAGCTAAAATGGTTGCTGTTTGTGGTTTACCTTTTTCATTTCCTTCTCATCCTGGTTTTGTTCATTATATTCGAGAATTATATAACCCAGATTATGAAAGTATTCCAAGAAATACAATTAAAAGTGATCTTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTACTTATTATGATGGTAGATTATCTATTACTTCTAATATGGGACGTAGTCCTAATGGTAACGATTATTTTACACCTACTGTCCATTGGATTGACCATGAATGGAACATACGAAAACGAATATTAGCGTATAAATATGTTGAAGAAACTAAAATCGGTTCTTATATAGCATCAAAAGTAGGCCCTA</gDNA_template>
            <first_frame> D  S  *  Y  G  N  F  *  Y  K  M  R  K  K  L  L  L  R  A  L  N  V  N  W  *  *  N  M  *  L  R  V  H  K  G  E  R  D  D  *  E  H  I  Y  L  S  V  I  K  N  L  L  A  *  M  I  *  K  E  L  I  E  M  E  H  P  Y  P  K  V  L  W  V  L  E  V  L  I  W  F  K  V  Y  *  I  C  L  T  R  L  V  E  A  H  T  A  R  I  V  K  K  K  I  V  E  N  K  L  K  W  L  L  F  V  V  Y  L  F  H  F  L  L  I  L  V  L  F  I  I  F  E  N  Y  I  T  Q  I  M  K  V  F  Q  E  I  Q  L  K  V  I  F  L  N  I  K  K  N  I  L  I  F  F  V  V  Y  L  L  I  M  M  V  D  Y  L  L  L  L  I  W  D  V  V  L  M  V  T  I  I  L  H  L  L  S  I  G  L  T  M  N  G  T  Y  E  N  E  Y  *  R  I  N  M  L  K  K  L  K  S  V  L  I  *  H  Q  K  *  A  L </first_frame>
            <second_frame>  I  V  N  M  E  I  F  D  T  K  *  G  K  N  Y  C  C  V  H  *  M  *  I  G  N  E  T  C  N  Y  G  Y  T  R  G  N  G  T  T  K  N  T  F  T  *  V  *  *  R  I  C  S  P  R  *  Y  R  K  S  *  *  K  W  N  T  H  T  R  K  F  Y  G  C  W  R  F  *  Y  G  S  R  C  I  K  Y  V  *  P  G  W  S  K  H  T  P  H  V  *  *  R  K  R  S  *  R  I  S  *  N  G  C  C  L  W  F  T  F  F  I  S  F  S  S  W  F  C  S  L  Y  S  R  I  I  *  P  R  L  *  K  Y  S  K  K  Y  N  *  K  *  S  F  *  I  S  K  R  I  F  S  F  S  L  L  F  I  Y  L  L  *  W  *  I  I  Y  Y  F  *  Y  G  T  *  S  *  W  *  R  L  F  Y  T  Y  C  P  L  D  *  P  *  M  E  H  T  K  T  N  I  S  V  *  I  C  *  R  N  *  N  R  F  L  Y  S  I  K  S  R  P   </second_frame>
            <third_frame>   *  L  I  W  K  F  L  I  Q  N  E  E  K  T  T  V  A  C  T  K  C  K  L  V  M  K  H  V  T  T  G  T  Q  G  G  T  G  R  L  R  T  H  L  L  K  C  N  K  E  F  A  R  L  D  D  I  E  R  A  N  R  N  G  T  P  I  P  E  S  S  M  G  V  G  G  S  N  M  V  Q  G  V  L  N  M  S  N  P  A  G  R  S  T  H  R  T  Y  S  K  E  K  D  R  R  E  *  A  K  M  V  A  V  C  G  L  P  F  S  F  P  S  H  P  G  F  V  H  Y  I  R  E  L  Y  N  P  D  Y  E  S  I  P  R  N  T  I  K  S  D  L  F  K  Y  Q  K  E  Y  S  H  F  L  C  C  L  F  T  Y  Y  D  G  R  L  S  I  T  S  N  M  G  R  S  P  N  G  N  D  Y  F  T  P  T  V  H  W  I  D  H  E  W  N  I  R  K  R  I  L  A  Y  K  Y  V  E  E  T  K  I  G  S  Y  I  A  S  K  V  G  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102357" stop="101992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICLTRLVEAHTARIVKKKIVENKLKWLLFVVYLFHFLLILVLFIIFENYITQIMKVFQEIQLKVIFLNIKKNILIFFVVYLLIMMVDYLLLLIWDVVLMVTIILHLLSIGLTMNGTYENEY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102289" stop="101933"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMVAVCGLPFSFPSHPGFVHYIRELYNPDYESIPRNTIKSDLFKYQKEYSHFLCCLFTYYDGRLSITSNMGRSPNGNDYFTPTVHWIDHEWNIRKRILAYKYVEETKIGSYIASKVGP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102604" stop="102290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIWKFLIQNEEKTTVACTKCKLVMKHVTTGTQGGTGRLRTHLLKCNKEFARLDDIERANRNGTPIPESSMGVGGSNMVQGVLNMSNPAGRSTHRTYSKEKDRRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 194 chains have been computed
$ 
$ memory statistics:
$ 92432 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 5135 bytes was the average size of a spliced alignment
$ 18784 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1565 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 250 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:57:40
-->
